CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP020077	Vibrio campbellii strain 20130629003S01 chromosome II, complete sequence	1 crisprs	WYL,csa3,cas3,RT	5	1
NZ_CP020079	Vibrio campbellii strain 20130629003S01 plasmid pVCGX2, complete sequence	0 crisprs	NA	0	2
NZ_CP020081	Vibrio campbellii strain 20130629003S01 plasmid pVCGX4, complete sequence	0 crisprs	NA	0	0
NZ_CP020078	Vibrio campbellii strain 20130629003S01 plasmid pVCGX1, complete sequence	0 crisprs	NA	0	1
NZ_CP020080	Vibrio campbellii strain 20130629003S01 plasmid pVCGX3, complete sequence	0 crisprs	NA	0	0
NZ_CP020076	Vibrio campbellii strain 20130629003S01 chromosome I, complete sequence	0 crisprs	DEDDh,DinG,cas3,csx1,csa3	0	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020077_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020077_1

1579937-1580802

Orphan

Consensus_repeat	Method
GTCACATTCGANGTATCCCANNNACCTATATCTTGNTTAAA	CRT

11 spacers

The CRISPR arrays of NZ_CP020077_1

>merge|NZ_CP020077|1|1579937-1580802|CRT
GTCACATTCGATGTATCCCAACGGCCTATATCTTGGTTAAAGGCTTGAGCATCATAAAACATAAAATCCATCCTCGTCACATTCGACGTATCCCAATCACCTATATCTTGGTTAAAGGCACCTGCGTGATAAAACATAGAATTCATCTTCGTCACATTCGACGTATCCCAAGCACCTATATCTTGGTTAAAAGCTTTTACGTCTCTTAACATATACGACATATTTGTCACATTCGACGTATCCCAATCACCTATATCTTGGTTAAAGGCTTTTGCATTATCAAACATATTTTCCATTCTCGTCACATTCGACGTATCCCAATCACCTATATCTTGGTCGAACTTATCTGTATTGGAGAACATGTAGTGCATCTTTGTCACTTTCGATGTATCCCAGCGACCTATATTTTGATTAAAGGCTTCGGCTCTCGCAAACATACTATTCATATCTGTAACTTTCGATGTATCCCAGCGACCTATATCTTGATTAAAGGCTTCGGTTCCCGCAAACATTCCCTCCATATCCCACACTATCGATGTATCCCAGTGCCCGATATCTTGATTAAAGGCTTTTGCGCCAGAAAACATTTTATACATTGACGTCACATTCGATGTATTCCAATGACCTATGTCTTGATTAAAAGATCTAGCACTACTAAACATTCCACTCATACTTTGCACATTCGATGTATCCCAGTGCCCGATGTCTTGATTAAAAGCTTGAGCATATTCAAACATGTCAGACATTAACGTCACACTCGATGTATCCCAAAAACCTATATCTTGATTAAATGCTTTTGCTCCATCAAACATTTGAGACATATACGTCACATTCGATGTATCCCAATCACTGATATCGGCATTAAA

>NZ_CP020077|1|1|1579937-1580802|CRT
GTCACATTCGATGTATCCCAACGGCCTATATCTTGGTTAAA	GGCTTGAGCATCATAAAACATAAAATCCATCCTC
GTCACATTCGACGTATCCCAATCACCTATATCTTGGTTAAA	GGCACCTGCGTGATAAAACATAGAATTCATCTTC
GTCACATTCGACGTATCCCAAGCACCTATATCTTGGTTAAA	AGCTTTTACGTCTCTTAACATATACGACATATTT
GTCACATTCGACGTATCCCAATCACCTATATCTTGGTTAAA	GGCTTTTGCATTATCAAACATATTTTCCATTCTC
GTCACATTCGACGTATCCCAATCACCTATATCTTGGTCGAA	CTTATCTGTATTGGAGAACATGTAGTGCATCTTT
GTCACTTTCGATGTATCCCAGCGACCTATATTTTGATTAAA	GGCTTCGGCTCTCGCAAACATACTATTCATATCT
GTAACTTTCGATGTATCCCAGCGACCTATATCTTGATTAAA	GGCTTCGGTTCCCGCAAACATTCCCTCCATATCC
CACACTATCGATGTATCCCAGTGCCCGATATCTTGATTAAA	GGCTTTTGCGCCAGAAAACATTTTATACATTGAC
GTCACATTCGATGTATTCCAATGACCTATGTCTTGATTAAA	AGATCTAGCACTACTAAACATTCCACTCATACTT
TGCACATTCGATGTATCCCAGTGCCCGATGTCTTGATTAAA	AGCTTGAGCATATTCAAACATGTCAGACATTAAC
GTCACACTCGATGTATCCCAAAAACCTATATCTTGATTAAA	TGCTTTTGCTCCATCAAACATTTGAGACATATAC
GTCACATTCGATGTATCCCAATCACTGATATCGGCATTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020077.1\|WP_077201569.1\|1589418_1590825_+\|H(+)/Cl(-)-exchange-transporter-ClcA	unknown	unknown	gnl\|CDD\|235385
NZ_CP020077.1\|WP_077201573.1\|1581086_1581524_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP020077.1\|WP_005425857.1\|1573387_1573864_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020077.1\|WP_005425931.1\|1570875_1572147_-\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP020077.1\|WP_077201576.1\|1573860_1575231_-\|pilus-assembly-protein-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|227299
NZ_CP020077.1\|WP_045371730.1\|1591085_1592033_+\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765
NZ_CP020077.1\|WP_077201575.1\|1578378_1579428_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP020077.1\|WP_005534869.1\|1581852_1582896_-\|GMP-reductase	unknown	unknown	gnl\|CDD\|235343
NZ_CP020077.1\|WP_045403266.1\|1577329_1578220_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP020077.1\|WP_045403262.1\|1575230_1576055_-\|pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
NZ_CP020077.1\|WP_077201570.1\|1588197_1588758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020077.1\|WP_005425904.1\|1584995_1585436_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|366402
NZ_CP020077.1\|WP_005425883.1\|1576656_1576863_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|368212
NZ_CP020077.1\|WP_005425987.1\|1585435_1586440_-\|response-regulator	unknown	unknown	gnl\|CDD\|381124
NZ_CP020077.1\|WP_045421236.1\|1576076_1576502_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|227295
NZ_CP020077.1\|WP_045370918.1\|1569971_1570874_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP020077.1\|WP_077201572.1\|1583349_1584885_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|182554
NZ_CP020077.1\|WP_077201571.1\|1586761_1587670_-\|aldo/keto-reductase-family-oxidoreductase	unknown	unknown	gnl\|CDD\|227322
NZ_CP020077.1\|WP_045379884.1\|1572143_1573385_-\|chromosome-partitioning-protein-ParA	unknown	unknown	gnl\|CDD\|366743
NZ_CP020077.1\|WP_010647128.1\|1587766_1588186_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NZ_CP020077.1\|WP_077201569.1\|1589418_1590825_+\|H(+)/Cl(-)-exchange-transporter-ClcA	gnl\|CDD\|235385	PRK05277, PRK05277, H(+)/Cl(-) exchange transporter ClcA.	0
NZ_CP020077.1\|WP_005534869.1\|1581852_1582896_-\|GMP-reductase	gnl\|CDD\|235343	PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional.	0
NZ_CP020077.1\|WP_005425883.1\|1576656_1576863_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|368212	pfam04964, Flp_Fap, Flp/Fap pilin component.	1.129e-07
NZ_CP020077.1\|WP_005425931.1\|1570875_1572147_-\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	1.72395e-148
NZ_CP020077.1\|WP_077201576.1\|1573860_1575231_-\|pilus-assembly-protein-N-terminal-domain-containing-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	1.29452e-74
NZ_CP020077.1\|WP_045371730.1\|1591085_1592033_+\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	1.13808e-84
NZ_CP020077.1\|WP_045370918.1\|1569971_1570874_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	5.85417e-39
NZ_CP020077.1\|WP_077201573.1\|1581086_1581524_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.06961e-21
NZ_CP020077.1\|WP_045403266.1\|1577329_1578220_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.41354e-35
NZ_CP020077.1\|WP_045403262.1\|1575230_1576055_-\|pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	1.92814e-13
NZ_CP020077.1\|WP_005425904.1\|1584995_1585436_-\|PAS-domain-containing-protein	gnl\|CDD\|366402	pfam00989, PAS, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	2.48848e-05
NZ_CP020077.1\|WP_005425987.1\|1585435_1586440_-\|response-regulator	gnl\|CDD\|381124	cd17593, REC_CheC-like, phosphoacceptor receiver (REC) domain of uncharacterized response regulators containing a CheC domain. This subfamily is composed of uncharacterized proteins containing an N-terminal REC domain and a C-terminal CheC domain that may function as the output/effector domain of a response regulator. CheC is a CheY-P phosphatase, affecting the level of phosphorylated CheY which controls the sense of flagella rotation and determine swimming behavior of chemotactic bacteria. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.8751e-59
NZ_CP020077.1\|WP_045421236.1\|1576076_1576502_-\|prepilin-peptidase	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	8.94585e-09
NZ_CP020077.1\|WP_077201575.1\|1578378_1579428_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	1.14266e-15
NZ_CP020077.1\|WP_077201572.1\|1583349_1584885_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	6.98973e-160
NZ_CP020077.1\|WP_077201571.1\|1586761_1587670_-\|aldo/keto-reductase-family-oxidoreductase	gnl\|CDD\|227322	COG4989, COG4989, Predicted oxidoreductase [General function prediction only].	3.52259e-173
NZ_CP020077.1\|WP_045379884.1\|1572143_1573385_-\|chromosome-partitioning-protein-ParA	gnl\|CDD\|366743	pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.	3.98077e-08
NZ_CP020077.1\|WP_010647128.1\|1587766_1588186_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.0089081

>NZ_CP020077.1|WP_077201575.1|1578378_1579428_-|alpha/beta-hydrolase
MKTTKLIPLSLVASAVLGTTSVAAETFLGADYHDGKNKVAFLSENVRIAGNVFLPPNYDESKNYPALVVITPASGVKEQTAGIYAEKMAKKGYITLAFDHRTYGESGGYPRGMENAPMKVEDIKNAITFLSHFPGVDPQRIGELGICSGAGYSLQVAMQDTRLDSVATVSGFVDFTDYGMGGATQYMDQITGDPVEQYRQQIQMASEARQKYYETGEVVLVDGIPSAEKAKSMNEFWVRAADYYRNPERGGGAENYSPMRAAMSLDTRYAYNPSENMALLGDTPFLAVVGTEALSAYFSEVAVKRGKDAGIDAELFEIKGAQHFDLYDQNKYVDQAVVKLDKFFSKTLL
>NZ_CP020077.1|WP_045403266.1|1577329_1578220_+|LysR-family-transcriptional-regulator
MKLQFENIVSFVAVVEEGSFSSAARKLGKSQSTVSTAVQNLESDLGFNLFNRQYSKVWLTEKGKRLFHLSAPVVSKYRELMTTAQQMNISEQIVYRVGIDPLVFNKEVKKTLLDFSEAFPNVDLLVVTKPSFVLGNYINEGKIDLALGNPYHKTGNDFNIDELFYVNCWWVAHEALTNIDSNPSQRVLLMDGSEELLNLSNIAAYNLWRLDDLGTILDLCKAQKGIAFLPEFLIEENEKESKLRRINDHPDLFGKRVTASLFWPTHSDFSLFNQWIKGELRSCVAPQPKFMADLAQ
>NZ_CP020077.1|WP_005425883.1|1576656_1576863_-|Flp-family-type-IVb-pilin
MITKLYVQTSLFLSKFKNDERGVTAIEYGLIAVAMAVLVTTAVGSDGFIGKLEGAFDQVAGAIDTASK
>NZ_CP020077.1|WP_045421236.1|1576076_1576502_-|prepilin-peptidase
MYLLVLFIVCLYVSIVDLLHRKIHNHTLFILLFFQCFLSPLDLQFITFLLMLGGGLILYALIWVGAGDIKYAAVLSLVIPLKDLPWSLVMTAFAGGFLAIIYLVSRKLVTNTSNTQEGIPYGIAISIGFYLIILTQNTPHI
>NZ_CP020077.1|WP_045403262.1|1575230_1576055_-|pilus-assembly-protein-CpaB
MRSRLVLLVAIVALIVGALGVIDLFKSDPQPIATAAVVENTNEEYVAVWMTTEAYEKGHAISAQGVVKQQLPLNEALALGVREDAQISFSPSILLNRSLDLGDVVLPEYQVSPGQPGYIDLLVTEGMTLYPLEVSDQNLINDYIRPGSFIDILTVSSPNDNLAQNIDKPKRFKGVKASMFLKHVKVLNIGDDAKGDSSVTARSPSKENGLTTVVIEVKPDDLAKLALAQRTMHIEIYRSQTYNKPEYAEVRNIIDNYTGIEELRGNVIDRREAL
>NZ_CP020077.1|WP_077201576.1|1573860_1575231_-|pilus-assembly-protein-N-terminal-domain-containing-protein
MVIQPRISQSLSIFIASLFFCLFFVTKTHAADRSITLNDGQHISVKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQSRLIVYGIDEDVLLSDRIIVDLDLTEIRRQLKFHFPDAKVTVQSVGEQVAVGGVVDSEETRDEIYRLVATLLGREKTEKWDKTYKFEFKSDYAQYEEPEGMIFARNMTWKGIVERIQVATTQQVNVKISVAQVTESFGKTVGVDWSSVGSSVGEFVFDQFDAANLSTLITALGNDQVAEVLAEPNLTVLSGESASFLVGGEVPVIVSTNNNVNISFKEFGIKLDLTAKVLSQDKIRMQLAPEVSEVESYVEAAGVKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQKIPFVGDIPILGAAFRKATTERKRTELIIVATVNLVEPIKPKDVQLPHIKKTSTLARWLNIESNKDSIASSDATIRLLSEGGFIQ
>NZ_CP020077.1|WP_005425857.1|1573387_1573864_-|hypothetical-protein
MKNLVFIALLTSSLLGCANERYFGGNGAEAIVYKENHSFEFAIKKRTETAKKIEQLIRDIESMDKGATYVVEYKSTRAKTMLEPIFKQYPAHIIAPQRVEYRSRPSLSSDLNIHVTLTRLKTQQCLPAKFQARIGQPDCFVESMRLKQVSDKSRLIGE
>NZ_CP020077.1|WP_045379884.1|1572143_1573385_-|chromosome-partitioning-protein-ParA
MFDLTKALTTKAKPAPSTTTGVAGCTLFYQSQECLNLVQEVFRFEGWNDPECVKANSGSTKLTEQQSSHIVILELNESRSVVEDAKAFASKVPTHKGVVVIGKEDAISTLRSLKEMGFYYVFWPVNKQEFADFLNHVNKNLKTFSGVSQKRKAKRVAVVGSKGGVGASFITTELSSLLSTQGSDTILVDHQYADTNIDVLLGLKDFKSRAIDEFTAPLHEMDEEGALSYLFNARKNLRVLAIDGDMSQNDILNYNQTLCDLLARNTNFIIEDFSGGVDFKVEPQLLVENFDVVVLVLDASVSSTRSAKRLFEKMANLQLTLSSRTRVITVVNYHRPENAYVLQKPDLPKYLGASVDLEVDYCKSLSHIIIDGKRAHKHDRNISRSMEQLVKLINGQPVTQKGMGSWLKRVRVK
>NZ_CP020077.1|WP_005425931.1|1570875_1572147_-|CpaF-family-protein
MSSNKDLYLAFRGQIFEALDAEAVQKMSRRDLESQIQAAVDLLANNYQRPITSMMKSGLVKSLIDELFGLGPLQPLVEDQSISDIMVNGPNNIFFERHGKVQKSEVSFVNEEQLLAIAKRIASRVGRRVDELSPTVDARLEDGSRVNIVIPPIALDGTSISIRKFREQNIGFEDLIGFGSMSPDMARVLMIASRCRMNVLISGGTGSGKTTLLNALSQYIAEDERIVTIEDAAELRLQQPNLVRLETRTSSVEQTGAVNQRDLVINALRMRPDRIILGECRGSEAFEMLQAMNTGHDGSMSTLHANTPRDAIARVESMVMMANLNQPLDAIRRTIVSAVQMIVQVNRLRDGSRKITSISEIVGLEGDSVVMEEIYRFRYDDTHFGETVKGDFVTSGIMQRSELVKKAQFFGLYDELMASFKGI
>NZ_CP020077.1|WP_045370918.1|1569971_1570874_-|type-II-secretion-system-F-family-protein
MLWLSLILFAFVLLLVRDSKVKKVDQFFNIEEVEAENFNAINVKSLVRKQNWQKFKESISPTLKVLGPRSSLYIALYITGSLIVSWYFVVKLLLMSSIWLTLGLSVLLTLFGYRYLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNSIGREFKLMGDRLKLGESPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMAMTSEARISAKIVAAIPLIFMIILNYVNPDNVNFVLYDPSGRLVLFYVLGSEFFGLFIVWLLVRGVRA
>NZ_CP020077.1|WP_077201573.1|1581086_1581524_-|BspA-family-leucine-rich-repeat-surface-protein
MKLRSIISACALLSCSQAFASEPETVTCESNKPGTVMVLEDELFVVVNDALIRNSDYWQNFLDGNIQLCTTHVTDMSDLFAKNKYFNQDISRWDTSRVTNMDRMFSGAKRFDQDLTHWNVKRVSRHTDFAKGSGLSEDSLPTFTQ
>NZ_CP020077.1|WP_005534869.1|1581852_1582896_-|GMP-reductase
MRIEQELKLGFKDVLFRPKRSTLKSRSQVNLTRDFTFKHSGRQWSGVPVIAANMDSVGSFAMAKALAEHGVMTAVHKHYTVEDWAEFAKTADKATLNNVMVSTGTSEADFQKTKDIMAISDEFIFICIDIANGYSEHLVEYVQRVRAAFPDKVISAGNVVTGDMCEELILAGADIVKVGIGPGSVCTTRVKTGVGYPQLSAIIECGDAAHGLGGMIIGDGGCSCAGDVAKAFGGGADFVMLGGMLAGHEESGGEVIEQDGKKFMKFYGMSSKSAMDKHSGGVAGYRAAEGKTVLLPFRGSVHGTIQDILGGVRSTCTYVGAAKLKELTKRTTFIRVQEQENNVFGKE
>NZ_CP020077.1|WP_077201572.1|1583349_1584885_-|NAD(P)H-hydrate-dehydratase
MDFNLALKLYTAEQVRNGEVIAAQMAGVSMYSLMQRAGMAVYERFLHLYPKARTVLVVCGKGNNGGDGYVFATLAKQAQLNVRVFQLGDTTSLKGDALRAFEDWQSVDGENSSWDDWHTALLEADVIIDAMLGTGLSGEVRHEYRRYIDQVNQIHCPVISIDIPSGLSADTGAVLGEAIQADHTVTFIGVKQGLCTGQARDYVGELHFSGLGVNVEFESIEEESALGIDHLIIRRLLPERKATAHKGNNGKLLCIGGNQGMSGAIRLCASAAVRTGAGLTAALTHPSSLLPLQVGSPEVMSQAITFDELKEQDNELIKRTRWADALAFGPGFGEDEWAHQAYQLLSQQHKPKVVDADGLNILAMLNQRNDVVVLRDEQRVMTPHPGEAARLLNVSTKEIEQDRFAAARQLHERYGGVIVLKGAGTLIYDGVRMYVCLAGNPGMASGGMGDVLSGVIAALLAKGLPIAVAARLGVMLHSHAADINVQQKGEIGLLASDVIESLRCAINVIES
>NZ_CP020077.1|WP_005425904.1|1584995_1585436_-|PAS-domain-containing-protein
MLNLPAEFEQFHWMVDMVQNVDMGLVVIDKDYNVQVWNGFMTHHSGLQSHEAIGRSIFDIFPEIPQEWFKLKTKPVYDLGCRSFITWRQRPYLFRCRNVRPVTQQAEFMYQNVTLNPMRTPTGKINSLFLSIQDATAEALMSQQQT
>NZ_CP020077.1|WP_005425987.1|1585435_1586440_-|response-regulator
MSFPVLICDDSALARKQMARSLPATLNADVTFAIHGKNALEELAQKEFKLMFLDLTMPEMDGFETLENMKRLGIQTPVVVVSGDIQPKAKERVFALGAKAFIQKPIGKDELKATLKELIEPNDRPQVITPTTIELPILRRRDIYMEVANVSIGRAADALARHFDVFVQLPLPNVNIFEVSELHMALRDLASHDNVSGVCQGFCGEGIAGEALVILSDSSVSDLKKLMKVPADSEELEELELLMDISNILVGSFLNGLGEQSEVRFFQSSPVLLGQHISIDSIIESTTGAFSRTMTFEVSYNIEGTSIRCDLLFMFVDESLPLLDNKLSYLMEDF
>NZ_CP020077.1|WP_077201571.1|1586761_1587670_-|aldo/keto-reductase-family-oxidoreductase
MVAKVVTAPNGPEFSELVQGYWRAVDWGMTAQERLSFLKQHIELGITTVDHADIYGNYECEALFGEALALDKSIREQIQIVTKCDINLCGDKTPERKINHYDTSAVHIYQSVNNSLERLKVDEIDVLLIHRPDVLMDADEVAEAFSELHKVGKVKHFGVSNFTPRQFELLQSRLSKPLVTNQVEINPLNFEVAHDGTLDLLQTHRVRPMAWSCLGGGSIFTGDTEQAVRVRNELEAIREEVGANSIDEVIYAWVRRLPSKPMPIIGSGKIERVQAAVNALNIELTREQWYRVWVASKGHGVP
>NZ_CP020077.1|WP_010647128.1|1587766_1588186_+|helix-turn-helix-transcriptional-regulator
MSFAQRLATLIGEESISGFARRVDVSEALIRKYLKGSEPSLTKANQIAMRANCSLEWLATGCGYLYRQAEVVDMEAYKLAFQHVMSGTISQVEEAQHRKLIAGYQYLRAHKKSDGFLDESAMATFLALHHENKTETSES
>NZ_CP020077.1|WP_077201570.1|1588197_1588758_-|hypothetical-protein
MLRFSFCSFLSLCLLTQTAYAQGAWWQVILSDASVVEVQQTLQEGGEWYTCEAQESADAFCLDDFHYYQQHLYGEANAEAKAIRLIFLTDYQPQNLSELILNLRKDGLVMKRIAIQGEQYDVAEALKHNSPEAVDKALVLFINRYPQQVPRRIDWVLAQEFGSPAPRLNVTLNSDGEMIELEVIRF
>NZ_CP020077.1|WP_077201569.1|1589418_1590825_+|H(+)/Cl(-)-exchange-transporter-ClcA
MTKRERIVKSVLAHVPKDAINQFISRGSTPTSFSVLFMAAIVGTLAGLVGTYFEIAVHFVSETRTEWLKSEIGSVLPLWLAAILISGALAFIGYYLVHRFAPEASGSGIPEIEGAMDNIRPVRWWRVIPVKFFGGMGALGSGMVLGREGPTVQMGGAVGRMVTDIFRVKDDDTRHSLLASGAAGGLAAAFNAPLAGIMFVVEEMRPQFRYSLISIRAVIISAIMANIVFRAINGQEAVITMPQYQSPELQSLWLFLLLGSLFGVFGVVFNKLITIAQDSFVALHKNDRKRYLITGTILGGVFGLLLLYVPQLTGGGIGLIPDITNGNYSISILVMLFVGRVITTLLCFGSGAPGGIFAPMLALGTLFGYAFGASADMLLPSLTIEPGVFAIAGMGALFAATVRAPITGILLVIEMTNNYYLILPLIITSLGAVIVAQLLGGQPIYSQLLHRTLKNDKLRQQDLPENQA
>NZ_CP020077.1|WP_045371730.1|1591085_1592033_+|TDT-family-transporter
MQFYSVPPSQAALALGMIGLGQAWALYLPEIGEPIRPFLAALGALLLTPVLLKYATSPRLFMADIKHPLSGSLMAPMSMALLMLCDYLAAVAPIIAYPLWFMAVLLHFTMMVLFFGFQIMNFKMSNIVPSWFLYPVGLISSSLAGSQFGHNVFSETLAMMCIGIYFFMLPLVLYRLVFFGSLPRRARPTLAIMAAPVNLSLAAYLVNFGEPDPILTGALAGIAITMTLLIYLCYFRLMRLKFQPSIAAVTFPSVISAIAMHRLTTFFAESYPQWHWLHDFGFLELSVATVLVVWVSAGYVKMYWPELIRTPSKQI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	AP019525	Tenacibaculum phage PTm5 DNA, complete genome	145123-145156	9	0.735
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	AP019524	Tenacibaculum phage PTm1 DNA, complete genome	145012-145045	9	0.735
NZ_CP020077_1	1.7\|1580428\|34\|NZ_CP020077\|CRT	1580428-1580461	34	NZ_CP028352	Pantoea vagans strain PV989 plasmid pPV989-94, complete sequence	88501-88534	9	0.735
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	NZ_CP009683	Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence	4764-4797	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MK250021	Prevotella phage Lak-B2, complete genome	419424-419457	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MK250024	Prevotella phage Lak-B5, complete genome	411747-411780	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MK250028	Prevotella phage Lak-B9, complete genome	416167-416200	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MK250023	Prevotella phage Lak-B4, complete genome	418635-418668	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MK250025	Prevotella phage Lak-B6, complete genome	414829-414862	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MK250022	Prevotella phage Lak-B3, complete genome	414920-414953	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MK250027	Prevotella phage Lak-B8, complete genome	418894-418927	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MK250026	Prevotella phage Lak-B7, complete genome	417930-417963	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MK250020	Prevotella phage Lak-B1, complete genome	416150-416183	10	0.706
NZ_CP020077_1	1.4\|1580203\|34\|NZ_CP020077\|CRT	1580203-1580236	34	MN693326	Marine virus AFVG_25M108, complete genome	2693-2726	10	0.706
NZ_CP020077_1	1.8\|1580503\|34\|NZ_CP020077\|CRT	1580503-1580536	34	NZ_CP007650	Lactobacillus salivarius strain JCM1046 plasmid pCTN1046, complete sequence	22538-22571	10	0.706
NZ_CP020077_1	1.2\|1580053\|34\|NZ_CP020077\|CRT	1580053-1580086	34	KY499642	Vibrio phage pVa-21, complete genome	85568-85601	11	0.676
NZ_CP020077_1	1.10\|1580653\|34\|NZ_CP020077\|CRT	1580653-1580686	34	KT962247	Cellulophaga phage phi17:2_18, complete genome	46187-46220	11	0.676
NZ_CP020077_1	1.10\|1580653\|34\|NZ_CP020077\|CRT	1580653-1580686	34	KT962246	Cellulophaga phage phi4:1_18, complete genome	45788-45821	11	0.676
NZ_CP020077_1	1.10\|1580653\|34\|NZ_CP020077\|CRT	1580653-1580686	34	KT962245	Cellulophaga phage phi4:1_13, complete genome	45788-45821	11	0.676
NZ_CP020077_1	1.10\|1580653\|34\|NZ_CP020077\|CRT	1580653-1580686	34	KC821632	Cellulophaga phage phi4:1, complete genome	45788-45821	11	0.676
NZ_CP020077_1	1.10\|1580653\|34\|NZ_CP020077\|CRT	1580653-1580686	34	NC_021798	Cellulophaga phage phi17:2, complete genome	46187-46220	11	0.676

1. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to AP019525 (Tenacibaculum phage PTm5 DNA, complete genome) position: , mismatch: 9, identity: 0.735

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
tggttctgcattaacaaacatattttccaaggag	Protospacer
 * **.******* ***************

2. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to AP019524 (Tenacibaculum phage PTm1 DNA, complete genome) position: , mismatch: 9, identity: 0.735

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
tggttctgcattaacaaacatattttccaaggag	Protospacer
 * **.******* ***************

3. spacer 1.7|1580428|34|NZ_CP020077|CRT matches to NZ_CP028352 (Pantoea vagans strain PV989 plasmid pPV989-94, complete sequence) position: , mismatch: 9, identity: 0.735

ggcttcggttcccgcaaacattccctccatatcc	CRISPR spacer
aaccccggttcccgcaaacatgccctcaatcggc	Protospacer
..*..**************** ***** **   *

4. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to NZ_CP009683 (Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
aacttttgcactatcaaacatattttcaggaagt	Protospacer
..********.**************** .    .

5. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
ttcttttgctttaacaaacatattttcttcatta	Protospacer
  ******* *** *************. . .*

6. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
ttcttttgctttaacaaacatattttcttcatta	Protospacer
  ******* *** *************. . .*

7. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
ttcttttgctttaacaaacatattttcttcatta	Protospacer
  ******* *** *************. . .*

8. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
ttcttttgctttaacaaacatattttcttcatta	Protospacer
  ******* *** *************. . .*

9. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
ttcttttgctttaacaaacatattttcttcatta	Protospacer
  ******* *** *************. . .*

10. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
ttcttttgctttaacaaacatattttcttcatta	Protospacer
  ******* *** *************. . .*

11. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
ttcttttgctttaacaaacatattttcttcatta	Protospacer
  ******* *** *************. . .*

12. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
ttcttttgctttaacaaacatattttcttcatta	Protospacer
  ******* *** *************. . .*

13. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
ttcttttgctttaacaaacatattttcttcatta	Protospacer
  ******* *** *************. . .*

14. spacer 1.4|1580203|34|NZ_CP020077|CRT matches to MN693326 (Marine virus AFVG_25M108, complete genome) position: , mismatch: 10, identity: 0.706

ggcttttgcattatcaaacatattttccattctc	CRISPR spacer
cctttttgcattatcaaatttattttcgttaata	Protospacer
  .***************. *******  *  *

15. spacer 1.8|1580503|34|NZ_CP020077|CRT matches to NZ_CP007650 (Lactobacillus salivarius strain JCM1046 plasmid pCTN1046, complete sequence) position: , mismatch: 10, identity: 0.706

ggcttttgc----gccagaaaacattttatacattgac	CRISPR spacer
----cctacgaaagccagaaatcattgtatacattgat	Protospacer
    ..*.*    ******** **** **********.

16. spacer 1.2|1580053|34|NZ_CP020077|CRT matches to KY499642 (Vibrio phage pVa-21, complete genome) position: , mismatch: 11, identity: 0.676

ggcacctgcgtgataaaacatagaattcatcttc	CRISPR spacer
tatctccatgtgataatacatagaatttatcttt	Protospacer
 .. .*...******* **********.*****.

17. spacer 1.10|1580653|34|NZ_CP020077|CRT matches to KT962247 (Cellulophaga phage phi17:2_18, complete genome) position: , mismatch: 11, identity: 0.676

agcttgagcatattcaaacatgtcagacattaac	CRISPR spacer
cttctcttcatattcatacatgtcatacattaga	Protospacer
  ..*   ******** ******** ******.

18. spacer 1.10|1580653|34|NZ_CP020077|CRT matches to KT962246 (Cellulophaga phage phi4:1_18, complete genome) position: , mismatch: 11, identity: 0.676

agcttgagcatattcaaacatgtcagacattaac	CRISPR spacer
cttctcttcatattcatacatgtcatacattaga	Protospacer
  ..*   ******** ******** ******.

19. spacer 1.10|1580653|34|NZ_CP020077|CRT matches to KT962245 (Cellulophaga phage phi4:1_13, complete genome) position: , mismatch: 11, identity: 0.676

agcttgagcatattcaaacatgtcagacattaac	CRISPR spacer
cttctcttcatattcatacatgtcatacattaga	Protospacer
  ..*   ******** ******** ******.

20. spacer 1.10|1580653|34|NZ_CP020077|CRT matches to KC821632 (Cellulophaga phage phi4:1, complete genome) position: , mismatch: 11, identity: 0.676

agcttgagcatattcaaacatgtcagacattaac	CRISPR spacer
cttctcttcatattcatacatgtcatacattaga	Protospacer
  ..*   ******** ******** ******.

21. spacer 1.10|1580653|34|NZ_CP020077|CRT matches to NC_021798 (Cellulophaga phage phi17:2, complete genome) position: , mismatch: 11, identity: 0.676

agcttgagcatattcaaacatgtcagacattaac	CRISPR spacer
cttctcttcatattcatacatgtcatacattaga	Protospacer
  ..*   ******** ******** ******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

691594 : 727446

Vibrio_phage(95.35%)

tail,transposase,head,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077201889.1\|691594_694231_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.5e-45	29.0
WP_077201888.1\|694290_695280_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_138058889.1\|695666_696146_-	S24 family peptidase	A0A2I7S9A5	Vibrio_phage	1.1e-71	79.9
WP_069537643.1\|696574_696832_+	helix-turn-helix domain-containing protein	A0A2I7S995	Vibrio_phage	4.4e-19	62.9
WP_086371271.1\|696841_698833_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2I7S9A8	Vibrio_phage	1.3e-299	76.1
WP_086371272.1\|698868_699816_+	AAA family ATPase	M4M9P4	Vibrio_phage	4.4e-149	85.4
WP_086371273.1\|699824_700064_+	hypothetical protein	NA	NA	NA	NA
WP_153993905.1\|700067_700220_+	hypothetical protein	NA	NA	NA	NA
WP_086371274.1\|700228_700603_+	hypothetical protein	NA	NA	NA	NA
WP_086371275.1\|700595_700919_+	hypothetical protein	A0A2I7S9B1	Vibrio_phage	5.0e-20	48.6
WP_086371276.1\|700929_701130_+	hypothetical protein	NA	NA	NA	NA
WP_086371277.1\|701136_701370_+	hypothetical protein	NA	NA	NA	NA
WP_086371278.1\|701356_701977_+	DUF3164 family protein	M4MHH7	Vibrio_phage	1.7e-85	79.9
WP_086371279.1\|701989_702262_+	hypothetical protein	M1PJ71	Vibrio_phage	2.2e-24	63.6
WP_086371280.1\|702254_702473_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_086371281.1\|702465_702705_+	hypothetical protein	M4MCS5	Vibrio_phage	1.8e-22	70.8
WP_086371282.1\|702855_703335_+	hypothetical protein	M4MHH2	Vibrio_phage	9.7e-52	68.7
WP_086371283.1\|703331_703871_+	hypothetical protein	A0A2P9JZH6	Alteromonadaceae_phage	6.7e-25	44.0
WP_062853649.1\|703959_704196_+	hypothetical protein	M4M9N5	Vibrio_phage	1.8e-19	57.7
WP_086371284.1\|704204_704429_+	hypothetical protein	NA	NA	NA	NA
WP_086371353.1\|704434_704968_+	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	1.4e-62	69.8
WP_078557805.1\|705036_705438_+	transcriptional regulator	M4MHG9	Vibrio_phage	7.8e-55	78.6
WP_086371286.1\|705723_706290_+	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	3.1e-73	72.0
WP_086371287.1\|706289_706562_+	hypothetical protein	A0A2I7S9C2	Vibrio_phage	1.7e-21	56.5
WP_086371288.1\|706546_707143_+	hypothetical protein	M4MB79	Vibrio_phage	4.1e-44	55.7
WP_062853642.1\|707142_707358_+	TraR/DksA family transcriptional regulator	M4MHG5	Vibrio_phage	6.1e-22	68.6
WP_062853641.1\|707357_707663_+	DUF2730 family protein	M4M9P7	Vibrio_phage	3.6e-12	42.3
WP_062853640.1\|707671_707965_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	8.8e-40	84.4
WP_065870377.1\|707974_708553_+	DUF3486 family protein	A0A2I7S9D1	Vibrio_phage	6.0e-72	74.3
WP_062853638.1\|708552_708744_+	hypothetical protein	M4MB75	Vibrio_phage	6.0e-13	57.6
WP_069537613.1\|708864_710427_+	hypothetical protein	M4MHG0	Vibrio_phage	2.4e-232	77.5
WP_086371289.1\|710423_711986_+	DUF935 domain-containing protein	M4M9P3	Vibrio_phage	4.6e-236	77.8
WP_086371290.1\|711978_712758_+	hypothetical protein	A0A2I7S9F9	Vibrio_phage	7.4e-126	80.1
WP_086371291.1\|713059_714037_+	peptidase	M1Q578	Vibrio_phage	1.5e-115	63.1
WP_169052850.1\|714033_714936_+\|head	Mu-like prophage major head subunit gpT family protein	A0A2I7S9D0	Vibrio_phage	5.2e-139	79.9
WP_065870382.1\|715014_715272_+	hypothetical protein	NA	NA	NA	NA
WP_086371292.1\|715274_715814_+	hypothetical protein	M1Q569	Vibrio_phage	4.7e-55	63.0
WP_086371293.1\|715841_716426_+	hypothetical protein	M4M9M3	Vibrio_phage	5.3e-20	57.1
WP_062853632.1\|716450_716885_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	1.1e-67	88.9
WP_086371294.1\|716884_717427_+	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	7.3e-80	80.4
WP_086371295.1\|717423_718020_+	hypothetical protein	A0A2I7S9D4	Vibrio_phage	1.4e-84	75.3
WP_086371354.1\|718051_718270_+	DUF2635 domain-containing protein	A0A2I7S9K4	Vibrio_phage	6.0e-09	47.4
WP_086371296.1\|718272_719751_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	7.9e-254	88.4
WP_062853628.1\|719766_720120_+\|tail	phage tail tube protein	A0A2I7S9D5	Vibrio_phage	1.9e-44	71.8
WP_078557791.1\|720119_720464_+\|tail	phage tail assembly protein	M4MB64	Vibrio_phage	8.2e-45	81.4
WP_086371297.1\|720589_722338_+\|tail	phage tail tape measure protein	M4MHE6	Vibrio_phage	1.9e-214	69.1
WP_086371298.1\|722349_723669_+	DNA circularization N-terminal domain-containing protein	A0A2I7S9E8	Vibrio_phage	1.2e-187	74.2
WP_086371299.1\|723661_724756_+\|tail	phage tail protein	A0A2I7S9G1	Vibrio_phage	9.9e-169	80.4
WP_086371300.1\|724756_725362_+\|plate	phage baseplate assembly protein	A0A2I7S9F6	Vibrio_phage	6.0e-91	82.7
WP_086371301.1\|725364_725817_+	phage GP46 family protein	M4MB61	Vibrio_phage	1.1e-65	85.1
WP_086371302.1\|725806_726874_+\|plate	baseplate J/gp47 family protein	M4MHE1	Vibrio_phage	6.3e-168	81.9
WP_086371303.1\|726858_727446_+	YmfQ family protein	M4M9M8	Vibrio_phage	4.0e-92	79.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP020078

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3075 : 49841

Vibrio_phage(33.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023624634.1\|3075_4020_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.7e-71	52.6
WP_031419872.1\|4324_4990_+	AAA family ATPase	A0A222YXS3	Escherichia_phage	3.9e-35	39.9
WP_025788937.1\|4973_5294_+	hypothetical protein	NA	NA	NA	NA
WP_023624629.1\|6028_7015_+	DNA-binding protein	NA	NA	NA	NA
WP_023624628.1\|7068_7743_+	hypothetical protein	NA	NA	NA	NA
WP_023624627.1\|8159_8984_-	hypothetical protein	NA	NA	NA	NA
WP_025788935.1\|9372_11706_-	AAA family ATPase	NA	NA	NA	NA
WP_023624625.1\|11680_12346_-	hypothetical protein	NA	NA	NA	NA
WP_025788934.1\|12326_13556_-	hypothetical protein	NA	NA	NA	NA
WP_158090022.1\|13944_14100_-\|transposase	transposase zinc-binding domain-containing protein	NA	NA	NA	NA
WP_031856358.1\|14575_15106_+	hypothetical protein	NA	NA	NA	NA
WP_010446562.1\|15090_16011_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	4.6e-175	98.7
WP_032072632.1\|16144_16429_+	hypothetical protein	NA	NA	NA	NA
WP_032072633.1\|16428_16584_+	hypothetical protein	NA	NA	NA	NA
WP_023622799.1\|16722_17058_+	hypothetical protein	NA	NA	NA	NA
WP_025789543.1\|17070_18387_+	hypothetical protein	NA	NA	NA	NA
WP_023622796.1\|18422_18902_-	hypothetical protein	NA	NA	NA	NA
WP_010446562.1\|19130_20051_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	4.6e-175	98.7
WP_170926988.1\|20090_20252_-	hypothetical protein	NA	NA	NA	NA
WP_023622802.1\|20253_20460_-	hypothetical protein	NA	NA	NA	NA
WP_010446562.1\|20659_21580_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	4.6e-175	98.7
WP_042770367.1\|21602_23552_+	hypothetical protein	A0A2R2ZGH5	Clostridioides_phage	5.1e-06	22.8
WP_025789712.1\|25566_25953_+	hypothetical protein	NA	NA	NA	NA
WP_025789711.1\|26153_26366_-	hypothetical protein	NA	NA	NA	NA
WP_023623339.1\|26422_27016_-	DUF2913 family protein	NA	NA	NA	NA
WP_077202352.1\|27119_27281_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_023623340.1\|28118_28352_+	hypothetical protein	NA	NA	NA	NA
WP_023623341.1\|28344_28641_+	hypothetical protein	NA	NA	NA	NA
WP_023623342.1\|28786_29125_+	hypothetical protein	NA	NA	NA	NA
WP_023623343.1\|29285_29717_+	antirestriction protein	NA	NA	NA	NA
WP_025789710.1\|29831_30017_+	hypothetical protein	A0A1Z1LX74	Escherichia_phage	8.7e-09	58.5
WP_023623345.1\|30126_31020_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	3.8e-49	35.8
WP_025789709.1\|31614_32028_+	antirestriction protein	NA	NA	NA	NA
WP_023623348.1\|32115_32532_+	hypothetical protein	NA	NA	NA	NA
WP_023623349.1\|32651_33050_+	hypothetical protein	NA	NA	NA	NA
WP_129148034.1\|33073_33328_+	hypothetical protein	NA	NA	NA	NA
WP_025818807.1\|33809_36020_-	topoisomerase DNA-binding C4 zinc finger domain-containing protein	A0A1X9I6W8	Streptococcus_phage	3.3e-38	26.4
WP_023623356.1\|36086_36827_-	hypothetical protein	NA	NA	NA	NA
WP_025789707.1\|36823_37363_-	hypothetical protein	NA	NA	NA	NA
WP_025789706.1\|37346_37598_-	hypothetical protein	NA	NA	NA	NA
WP_032072614.1\|37594_39562_-	TraM recognition domain-containing protein	NA	NA	NA	NA
WP_024700495.1\|40555_40963_-	H-NS histone family protein	NA	NA	NA	NA
WP_025789704.1\|41369_41756_-	hypothetical protein	NA	NA	NA	NA
WP_025791774.1\|41752_42466_-	hypothetical protein	NA	NA	NA	NA
WP_023624622.1\|42458_42749_-	hypothetical protein	NA	NA	NA	NA
WP_086371365.1\|43106_44117_-	hypothetical protein	NA	NA	NA	NA
WP_044140246.1\|44085_44571_-	hypothetical protein	NA	NA	NA	NA
WP_025789782.1\|44743_45325_-	hypothetical protein	NA	NA	NA	NA
WP_025791775.1\|45385_45901_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_025789765.1\|45914_46427_-	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
WP_023624145.1\|46423_46873_-	hypothetical protein	NA	NA	NA	NA
WP_023624144.1\|46909_47335_-	hypothetical protein	NA	NA	NA	NA
WP_023624143.1\|47386_47794_-	hypothetical protein	NA	NA	NA	NA
WP_024700485.1\|47996_48149_-	Hok/Gef family protein	NA	NA	NA	NA
WP_025789761.1\|48391_48661_-	hypothetical protein	NA	NA	NA	NA
WP_086371366.1\|48804_49452_-	GlyGly-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_086371367.1\|49448_49841_-\|protease	trypsin-like serine protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP020079

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

141930 : 170769

Salmonella_phage(60.0%)

transposase,integrase

attL 135256:135272|attR 170193:170209

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
135256:135272	attL	NA	NA	NA	NA
WP_025634105.1\|141930_143088_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_025634104.1\|143396_143813_-	hypothetical protein	NA	NA	NA	NA
WP_042776360.1\|144058_144706_-	hypothetical protein	NA	NA	NA	NA
WP_170926990.1\|144770_144932_-	hypothetical protein	NA	NA	NA	NA
WP_025634101.1\|144966_145284_-	hypothetical protein	NA	NA	NA	NA
WP_025634099.1\|145389_146727_-	hypothetical protein	NA	NA	NA	NA
WP_025634098.1\|146738_147077_-	hypothetical protein	NA	NA	NA	NA
WP_025634097.1\|147088_147637_-	hypothetical protein	NA	NA	NA	NA
WP_025634094.1\|148381_148675_+	hypothetical protein	NA	NA	NA	NA
WP_025634091.1\|148761_149124_+	hypothetical protein	NA	NA	NA	NA
WP_029811750.1\|150018_150201_-	hypothetical protein	NA	NA	NA	NA
WP_077202329.1\|150337_153316_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	4.6e-35	21.8
WP_001043260.1\|153786_154602_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_077202330.1\|154662_155466_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480968.1\|155465_156302_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_114144515.1\|156439_156925_+	EamA family transporter	NA	NA	NA	NA
WP_001973670.1\|156956_158156_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|158261_158912_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_001391758.1\|159426_160257_+	APH(6)-I family aminoglycoside O-phosphotransferase	NA	NA	NA	NA
WP_001120891.1\|160228_160768_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001255015.1\|160879_161185_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000214122.1\|161212_162427_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_001447541.1\|162643_163528_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_072161421.1\|163558_164527_-\|transposase	IS91-like element ISVsa3 family transposase	NA	NA	NA	NA
WP_086371372.1\|165018_165531_-	dihydrofolate reductase	U5J9P6	Bacillus_phage	9.4e-29	42.9
WP_079879887.1\|165621_165846_-	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|165876_167370_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_086371373.1\|167787_170769_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.2e-32	24.1
170193:170209	attR	NA	NA	NA	NA

DBSCAN-SWA_2

187427 : 195855

Vibrio_phage(66.67%)

head,tail,transposase,integrase

attL 179638:179651|attR 201244:201257

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
179638:179651	attL	NA	NA	NA	NA
WP_170926986.1\|187427_189026_-	tape measure protein	A0A2I7S9D9	Vibrio_phage	5.7e-141	58.0
WP_086371256.1\|189241_189601_-\|tail	phage tail assembly protein	A0A2I7S9E0	Vibrio_phage	2.9e-40	66.9
WP_086371257.1\|189644_190022_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_086371350.1\|190031_190895_-\|head	Mu-like prophage major head subunit gpT family protein	A0A2I7S9D0	Vibrio_phage	8.5e-115	66.4
WP_086371258.1\|190967_191531_-	glyoxalase	NA	NA	NA	NA
WP_170926978.1\|191537_191861_-	transcriptional regulator	NA	NA	NA	NA
WP_086371384.1\|191847_192222_-	transcriptional regulator	A0A2I7S9J0	Vibrio_phage	8.2e-06	30.7
WP_170926992.1\|192609_192771_-	hypothetical protein	NA	NA	NA	NA
WP_086371261.1\|192783_193011_-	hypothetical protein	NA	NA	NA	NA
WP_086371375.1\|193013_194126_-	AAA family ATPase	J9SVV1	Pseudomonas_phage	4.4e-47	38.5
WP_086371376.1\|194097_195855_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q5ZR04	Pseudomonas_phage	2.6e-94	34.7
201244:201257	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP020076

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

598734 : 616211

uncultured_Mediterranean_phage(18.18%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005531665.1\|598734_600375_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.1
WP_005425372.1\|600453_601755_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.5e-136	60.3
WP_005452106.1\|602369_602651_+	cell division protein FtsB	NA	NA	NA	NA
WP_005531669.1\|602652_603363_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	1.4e-06	23.1
WP_005425365.1\|603377_603854_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_077200201.1\|603899_604943_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_082242666.1\|604942_605719_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-68	54.1
WP_012128909.1\|605718_606345_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-37	53.9
WP_038891105.1\|606359_607283_+	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	2.4e-06	36.4
WP_005425361.1\|607363_608350_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
WP_077200202.1\|608438_611000_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.7e-33	22.7
WP_077200203.1\|611085_611568_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.1e-26	48.1
WP_005436413.1\|611768_612812_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.1e-111	60.4
WP_005425358.1\|613018_613486_+	recombination regulator RecX	NA	NA	NA	NA
WP_038892889.1\|613628_616211_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.8e-78	37.7

DBSCAN-SWA_2

2898205 : 2904896

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005440184.1\|2898205_2898676_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3
WP_077201053.1\|2898845_2899955_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	8.8e-64	39.8
WP_005424876.1\|2900114_2900768_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.3e-34	38.0
WP_077201054.1\|2900779_2901904_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-44	35.1
WP_005424846.1\|2901911_2902361_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_077201055.1\|2902488_2903739_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.4
WP_005424865.1\|2903756_2904896_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-62	41.4

DBSCAN-SWA_3

2979563 : 2986630

Megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005532589.1\|2979563_2979989_-	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.1e-21	40.6
WP_077201079.1\|2980089_2981388_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.2e-35	34.7
WP_005424887.1\|2981560_2981755_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_005424889.1\|2981799_2982138_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_077201080.1\|2982151_2984005_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.6e-110	39.8
WP_005424897.1\|2984026_2984542_-	co-chaperone HscB	NA	NA	NA	NA
WP_005424893.1\|2984597_2984921_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.0e-25	51.4
WP_005424883.1\|2984994_2985378_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_038890722.1\|2985415_2986630_-	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	7.4e-32	30.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020077

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP020078

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP020079

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP020076

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection