CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015818	Staphylococcus aureus strain FORC_039 plasmid unnamed, complete sequence	0 crisprs	csa3	0	0	1	0
NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	11 crisprs	cas3,DEDDh,csa3,DinG,WYL	10	5	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015817_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_1

166186-166267

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015817_1

>merge|NZ_CP015817|1|166186-166267|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGGAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGG

>NZ_CP015817|1|1|166186-166267|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGG	GTGTGGGCCCCAACAAAGAGGAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_000706137.1\|171846_172872_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
NZ_CP015817.1\|WP_000480601.1\|161801_162128_-\|staphylobilin-forming-heme-oxygenase-IsdI	unknown	unknown	gnl\|CDD\|183968
NZ_CP015817.1\|WP_000723452.1\|160591_161737_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_CP015817.1\|WP_001230672.1\|158311_159199_+\|capsular-polysaccharide-type-5/8-biosynthesis-epimerase-CapN	unknown	unknown	gnl\|CDD\|187543
NZ_CP015817.1\|WP_000356963.1\|166331_166535_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000171919.1\|166713_167226_+\|DUF4242-domain-containing-protein	unknown	unknown	gnl\|CDD\|379428
NZ_CP015817.1\|WP_000779515.1\|159252_160515_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
NZ_CP015817.1\|WP_049311736.1\|168321_169296_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271
NZ_CP015817.1\|WP_001566873.1\|174952_182128_+\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
NZ_CP015817.1\|WP_001291023.1\|156538_157744_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NZ_CP015817.1\|WP_001092004.1\|171314_171674_+\|DUF2294-domain-containing-protein	unknown	unknown	gnl\|CDD\|227896
NZ_CP015817.1\|WP_000197961.1\|169292_170054_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP015817.1\|WP_001013481.1\|165077_166037_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_CP015817.1\|WP_000290397.1\|162944_164432_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143435
NZ_CP015817.1\|WP_000171649.1\|170066_171098_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP015817.1\|WP_000590844.1\|167567_168308_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP015817.1\|WP_000826856.1\|173255_174506_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP015817.1\|WP_001237004.1\|162134_162518_-\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_CP015817.1\|WP_000825100.1\|157754_158312_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|225059
NZ_CP015817.1\|WP_001238807.1\|155266_156505_+\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240532

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_000706137.1\|171846_172872_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
NZ_CP015817.1\|WP_000480601.1\|161801_162128_-\|staphylobilin-forming-heme-oxygenase-IsdI	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	3.45506e-64
NZ_CP015817.1\|WP_000723452.1\|160591_161737_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP015817.1\|WP_001238807.1\|155266_156505_+\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.56476e-21
NZ_CP015817.1\|WP_001230672.1\|158311_159199_+\|capsular-polysaccharide-type-5/8-biosynthesis-epimerase-CapN	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.33769e-117
NZ_CP015817.1\|WP_000171919.1\|166713_167226_+\|DUF4242-domain-containing-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
NZ_CP015817.1\|WP_000779515.1\|159252_160515_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_CP015817.1\|WP_049311736.1\|168321_169296_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.0691e-50
NZ_CP015817.1\|WP_001566873.1\|174952_182128_+\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP015817.1\|WP_001291023.1\|156538_157744_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	2.36611e-72
NZ_CP015817.1\|WP_001092004.1\|171314_171674_+\|DUF2294-domain-containing-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
NZ_CP015817.1\|WP_000197961.1\|169292_170054_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.22607e-73
NZ_CP015817.1\|WP_001013481.1\|165077_166037_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.08716e-108
NZ_CP015817.1\|WP_000290397.1\|162944_164432_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
NZ_CP015817.1\|WP_000171649.1\|170066_171098_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.20782e-20
NZ_CP015817.1\|WP_000590844.1\|167567_168308_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	6.91027e-113
NZ_CP015817.1\|WP_000826856.1\|173255_174506_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.74561e-72
NZ_CP015817.1\|WP_000825100.1\|157754_158312_+\|sugar-transferase	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	9.15239e-87
NZ_CP015817.1\|WP_001237004.1\|162134_162518_-\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	5.80598e-41

>NZ_CP015817.1|WP_001013481.1|165077_166037_+|cation-transporter
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>NZ_CP015817.1|WP_000290397.1|162944_164432_+|aldehyde-dehydrogenase-family-protein
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDQEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>NZ_CP015817.1|WP_001237004.1|162134_162518_-|YbaN-family-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>NZ_CP015817.1|WP_000480601.1|161801_162128_-|staphylobilin-forming-heme-oxygenase-IsdI
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDIFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>NZ_CP015817.1|WP_000723452.1|160591_161737_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRTDKPDEFVPLRHK
>NZ_CP015817.1|WP_000779515.1|159252_160515_+|nucleotide-sugar-dehydrogenase
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILSFLEKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKCVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVSYYNYGNIFNFIDK
>NZ_CP015817.1|WP_001230672.1|158311_159199_+|capsular-polysaccharide-type-5/8-biosynthesis-epimerase-CapN
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLILLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLIYSNTLYDNNNALEVIPGKMSLVIADIMDETTTKDKA
>NZ_CP015817.1|WP_000825100.1|157754_158312_+|sugar-transferase
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDNQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>NZ_CP015817.1|WP_001291023.1|156538_157744_+|glycosyltransferase-family-4-protein
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQSQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKALVLVMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>NZ_CP015817.1|WP_001238807.1|155266_156505_+|oligosaccharide-flippase-family-protein
MRLNKFIGDSFLMILSSGIAQVILIITTPIITRLYSPTEFGEFTIFSNIAMILIPIINARYDLLIVNTKNDRSANILSQISFLISLLILLILIPIFAISACLYPNFILDFIFIIIMLFLVSLTNIFTNYLNKERKYKVLSLINVFRAGSMALLQIIFGLLALGSLGLIIGFSLSYIAGITLGYKTFKKHFNIVRDKEETKALFLENKNQLVYSTPSILLNSLSFSVVVFFIGILYTNTEVGIYGMAIRVLGIPVTIISLGLSKIFMQQANDYYIEHGNFRNLLLKFSSILVIVSIILYVPLYLFSEELVNILLGHSWVDAITVIKIVIPLFVIRLIVSTVSLSVIVLQKQQLELILQALFLIGTTATFVISKMLNLTFLNFVSINTIVLIVSYMIFFIALYYFAKNKQFKNS
>NZ_CP015817.1|WP_000356963.1|166331_166535_-|hypothetical-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>NZ_CP015817.1|WP_000171919.1|166713_167226_+|DUF4242-domain-containing-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>NZ_CP015817.1|WP_000590844.1|167567_168308_+|ABC-transporter-ATP-binding-protein
MIKIQQLQHHFGSHKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEGRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>NZ_CP015817.1|WP_049311736.1|168321_169296_+|ABC-transporter-substrate-binding-protein
MKRLSIIVIIGIFIITGCDWQRTSKEPSKNTQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLNQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQNRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>NZ_CP015817.1|WP_000197961.1|169292_170054_+|ABC-transporter-permease
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>NZ_CP015817.1|WP_000171649.1|170066_171098_+|acyl-CoA/acyl-ACP-dehydrogenase
MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNVQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>NZ_CP015817.1|WP_001092004.1|171314_171674_+|DUF2294-domain-containing-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>NZ_CP015817.1|WP_000706137.1|171846_172872_+|NAD-dependent-formate-dehydrogenase
MKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>NZ_CP015817.1|WP_000826856.1|173255_174506_+|MFS-transporter
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGIFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>NZ_CP015817.1|WP_001566873.1|174952_182128_+|amino-acid-adenylation-domain-containing-protein
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPTSSANYDLEAFFKQELSTYHFNDSPLFKFKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHLNRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYLPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDATPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLAPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPETIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSELNVAQLRQAVQRLIARHEILRTQYIVVDDEVRQRIVADVAVDFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYTINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEVVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPNKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPEQLQQLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENVILAIRGISDCVVTVSHFDTHDILNAYYVGEQQVEQDLKQYLNDQLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMYQNQQSLVALPDNLSELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEVLQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEIMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTNPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Crispr_ID: NZ_CP015817_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_2

977911-977995

Orphan

Consensus_repeat	Method
TGCAAGTTGGGGTGTGGGCCCCAACA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP015817_2

>merge|NZ_CP015817|2|977911-977995|CRISPRCasFinder
TGCAAGTTGGGGTGTGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGTGGGACCCAACA

>NZ_CP015817|2|2|977911-977995|CRISPRCasFinder
TGCAAGTTGGGGTGTGGGCCCCAACA	TAGAGAATTTCAAAAAAGAAATTCTACAGGCAA
TGCAAGTTGGGGTGTGGGACCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_000613738.1\|971746_972301_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP015817.1\|WP_000228666.1\|983858_984323_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP015817.1\|WP_000149064.1\|979609_980311_+\|cell-wall-active-antibiotics-response-protein	unknown	unknown	gnl\|CDD\|227100
NZ_CP015817.1\|WP_000037079.1\|982081_983299_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_CP015817.1\|WP_001250329.1\|973482_974796_+\|lipid-II-isoglutaminyl-synthase-subunit-MurT	unknown	unknown	gnl\|CDD\|223840
NZ_CP015817.1\|WP_000949467.1\|972690_973191_-\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|224445
NZ_CP015817.1\|WP_001017131.1\|980307_981351_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP015817.1\|WP_000140176.1\|970609_971680_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP015817.1\|WP_000544966.1\|974797_975529_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP015817.1\|WP_000428172.1\|983576_983852_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000999713.1\|976657_977644_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP015817.1\|WP_001147870.1\|968301_969663_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP015817.1\|WP_001566709.1\|975754_976168_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000153535.1\|981340_981970_+\|two-component-system-response-regulator-VraR	unknown	unknown	gnl\|CDD\|225107
NZ_CP015817.1\|WP_001790679.1\|972516_972609_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000180460.1\|984469_984670_+\|DUF1128-family-protein	unknown	unknown	gnl\|CDD\|227177
NZ_CP015817.1\|WP_001110179.1\|979208_979595_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000548781.1\|969832_970363_+\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_CP015817.1\|WP_001789555.1\|984672_985929_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
NZ_CP015817.1\|WP_086353412.1\|978233_978992_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_000613738.1\|971746_972301_-\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
NZ_CP015817.1\|WP_000228666.1\|983858_984323_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65
NZ_CP015817.1\|WP_001789555.1\|984672_985929_+\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
NZ_CP015817.1\|WP_000037079.1\|982081_983299_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	3.59491e-85
NZ_CP015817.1\|WP_001250329.1\|973482_974796_+\|lipid-II-isoglutaminyl-synthase-subunit-MurT	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.37755e-99
NZ_CP015817.1\|WP_001017131.1\|980307_981351_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
NZ_CP015817.1\|WP_000140176.1\|970609_971680_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP015817.1\|WP_000544966.1\|974797_975529_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.99932e-120
NZ_CP015817.1\|WP_000999713.1\|976657_977644_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.20478e-76
NZ_CP015817.1\|WP_001147870.1\|968301_969663_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
NZ_CP015817.1\|WP_000149064.1\|979609_980311_+\|cell-wall-active-antibiotics-response-protein	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
NZ_CP015817.1\|WP_000153535.1\|981340_981970_+\|two-component-system-response-regulator-VraR	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.75115e-79
NZ_CP015817.1\|WP_000949467.1\|972690_973191_-\|H-type-ferritin-FtnA	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
NZ_CP015817.1\|WP_000180460.1\|984469_984670_+\|DUF1128-family-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.24488e-25
NZ_CP015817.1\|WP_000548781.1\|969832_970363_+\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.4991e-11
NZ_CP015817.1\|WP_086353412.1\|978233_978992_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.90075e-125

>NZ_CP015817.1|WP_000999713.1|976657_977644_-|aromatic-acid-exporter-family-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>NZ_CP015817.1|WP_001566709.1|975754_976168_+|hypothetical-protein
MKPTKVILKDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLH
>NZ_CP015817.1|WP_000544966.1|974797_975529_+|type-1-glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIIIESDTFGTIVGFENHGGRTYHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>NZ_CP015817.1|WP_001250329.1|973482_974796_+|lipid-II-isoglutaminyl-synthase-subunit-MurT
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYSVLRELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>NZ_CP015817.1|WP_000949467.1|972690_973191_-|H-type-ferritin-FtnA
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>NZ_CP015817.1|WP_001790679.1|972516_972609_+|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>NZ_CP015817.1|WP_000613738.1|971746_972301_-|3'-5'-exonuclease
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>NZ_CP015817.1|WP_000140176.1|970609_971680_+|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>NZ_CP015817.1|WP_000548781.1|969832_970363_+|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>NZ_CP015817.1|WP_001147870.1|968301_969663_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMIIFVTNGKKWSQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>NZ_CP015817.1|WP_086353412.1|978233_978992_+|type-I-methionyl-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGNLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>NZ_CP015817.1|WP_001110179.1|979208_979595_+|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>NZ_CP015817.1|WP_000149064.1|979609_980311_+|cell-wall-active-antibiotics-response-protein
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>NZ_CP015817.1|WP_001017131.1|980307_981351_+|sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>NZ_CP015817.1|WP_000153535.1|981340_981970_+|two-component-system-response-regulator-VraR
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>NZ_CP015817.1|WP_000037079.1|982081_983299_-|YihY/virulence-factor-BrkB-family-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIVFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDSNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>NZ_CP015817.1|WP_000428172.1|983576_983852_-|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>NZ_CP015817.1|WP_000228666.1|983858_984323_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>NZ_CP015817.1|WP_000180460.1|984469_984670_+|DUF1128-family-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>NZ_CP015817.1|WP_001789555.1|984672_985929_+|aminopeptidase
MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHELKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF

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Crispr_ID: NZ_CP015817_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_3

1117885-1117963

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015817_3

>merge|NZ_CP015817|3|1117885-1117963|CRISPRCasFinder
TGTTGGGGCCCCGCCAACTTGCACATTATTGAAAGCTGACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCA

>NZ_CP015817|3|3|1117885-1117963|CRISPRCasFinder
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGAAAGCTGACTATTGGCCAGCTTCTA
TGTTGGGGCCCCGCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_000265417.1\|1118264_1119674_+\|Mn(2+)-dependent-dipeptidase-Sapep	unknown	unknown	gnl\|CDD\|235988
NZ_CP015817.1\|WP_000836463.1\|1105736_1106048_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP015817.1\|WP_001566682.1\|1113050_1114319_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP015817.1\|WP_000526540.1\|1100765_1101719_-\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NZ_CP015817.1\|WP_000163829.1\|1123963_1124275_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|227871
NZ_CP015817.1\|WP_000764419.1\|1100205_1100769_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377744
NZ_CP015817.1\|WP_000434765.1\|1121075_1121867_+\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|223584
NZ_CP015817.1\|WP_049311740.1\|1106373_1112934_+\|LPXTG-anchored-repetitive-surface-protein-SasC	unknown	unknown	gnl\|CDD\|275089
NZ_CP015817.1\|WP_001024576.1\|1124361_1125438_+\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349906
NZ_CP015817.1\|WP_001217127.1\|1116383_1117079_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP015817.1\|WP_001051856.1\|1117095_1117518_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP015817.1\|WP_001048368.1\|1126799_1127396_+\|DUF4479-domain-containing-protein	unknown	unknown	gnl\|CDD\|234804
NZ_CP015817.1\|WP_001266157.1\|1121881_1122526_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP015817.1\|WP_000004344.1\|1114725_1116387_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP015817.1\|WP_001025061.1\|1101828_1103010_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP015817.1\|WP_000811163.1\|1125502_1125814_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP015817.1\|WP_000411085.1\|1119677_1120526_+\|D-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|130191
NZ_CP015817.1\|WP_001566684.1\|1103297_1105715_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP015817.1\|WP_001091387.1\|1125913_1126771_+\|DUF1444-domain-containing-protein	unknown	unknown	gnl\|CDD\|237463
NZ_CP015817.1\|WP_001823213.1\|1122996_1123839_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293814

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_000265417.1\|1118264_1119674_+\|Mn(2+)-dependent-dipeptidase-Sapep	gnl\|CDD\|235988	PRK07318, PRK07318, dipeptidase PepV; Reviewed.	0
NZ_CP015817.1\|WP_000836463.1\|1105736_1106048_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.11797e-25
NZ_CP015817.1\|WP_001566682.1\|1113050_1114319_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
NZ_CP015817.1\|WP_000526540.1\|1100765_1101719_-\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
NZ_CP015817.1\|WP_000163829.1\|1123963_1124275_-\|PepSY-domain-containing-protein	gnl\|CDD\|227871	COG5584, COG5584, Predicted small secreted protein [Function unknown].	4.0694e-45
NZ_CP015817.1\|WP_000764419.1\|1100205_1100769_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	2.38341e-67
NZ_CP015817.1\|WP_000434765.1\|1121075_1121867_+\|phosphotransferase-family-protein	gnl\|CDD\|223584	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism].	5.2385e-83
NZ_CP015817.1\|WP_049311740.1\|1106373_1112934_+\|LPXTG-anchored-repetitive-surface-protein-SasC	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	1.44103e-121
NZ_CP015817.1\|WP_001024576.1\|1124361_1125438_+\|M42-family-metallopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	2.36515e-152
NZ_CP015817.1\|WP_001217127.1\|1116383_1117079_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	5.41512e-94
NZ_CP015817.1\|WP_001051856.1\|1117095_1117518_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	0.000451559
NZ_CP015817.1\|WP_001048368.1\|1126799_1127396_+\|DUF4479-domain-containing-protein	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	7.47641e-48
NZ_CP015817.1\|WP_001266157.1\|1121881_1122526_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.9831e-87
NZ_CP015817.1\|WP_000004344.1\|1114725_1116387_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.06974e-123
NZ_CP015817.1\|WP_001025061.1\|1101828_1103010_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.66072e-94
NZ_CP015817.1\|WP_000811163.1\|1125502_1125814_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.34221e-24
NZ_CP015817.1\|WP_000411085.1\|1119677_1120526_+\|D-amino-acid-transaminase	gnl\|CDD\|130191	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase. This enzyme is a homodimer. The pyridoxal phosphate attachment site is the Lys at position 146 of the seed alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached. [Energy metabolism, Amino acids and amines].	6.28892e-159
NZ_CP015817.1\|WP_001566684.1\|1103297_1105715_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP015817.1\|WP_001091387.1\|1125913_1126771_+\|DUF1444-domain-containing-protein	gnl\|CDD\|237463	PRK13668, PRK13668, hypothetical protein; Provisional.	2.02352e-168
NZ_CP015817.1\|WP_001823213.1\|1122996_1123839_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293814	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain. Bacillus subtilis YtnP inhibits the signaling pathway required for the streptomycin production and development of aerial mycelium in Streptomyces griseus. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.13556e-156

>NZ_CP015817.1|WP_001051856.1|1117095_1117518_+|YtxH-domain-containing-protein
MAKGNLFKAILGIGGAVAAVLVTRKDSRDKLKAEYNKYKQDPQSYKDNAKDKATQLGTIANETIKEVKTNPKEYANRLKNNPKAFFEEEKSKFTEYDNKTDESIEKGKFDDEGGAAPNNNLRIVTEEDLKKNKNALSDKE
>NZ_CP015817.1|WP_001217127.1|1116383_1117079_+|rRNA-pseudouridine-synthase
MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYVENVYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLDKDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGKVKPAILTYIDNQTSHVTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
>NZ_CP015817.1|WP_000004344.1|1114725_1116387_+|polysaccharide-biosynthesis-protein
MSESKEMVRGTFLITISILITKVLGVLFIIPFNYLIGGQENMAPFTYAYAPYNIAIAVATAGVPLAASKYVAKYNAIGAYKVSQKFYKSSFIVMSITGVLGFLVLYFLAPYISELTLARNVHDKNGWSVDDITWIIRIISMVVIFIPVLATWRGIFQGYKSMGPTAVSEVTEQIARVIFILIGSYLVLNVFDGSILLANGIATFAAAVGAIIGIFTLWYYWRKRKHNIDRMVESDYTDIDVSYGKMYKEIIAYSIPFVIVSLNYPLFNLVDQFTHNGALSLVGIPSQLQDIFFNMLNMSTNKIVMIPTSLSAGFAVSLIPYITKTFAEGRLHEMHHQIRTSIGVLMFITVPASIGIMALAQPLFTVFYGYDPIVLGHDPNHDGSRLLFYYAPVAILISLLSVTASMLQGIDKQKLTVYVILASVVIKLALNYPLIMLFHTPGAILSTSIALLFAIGCNFYILKKYAKFKFSYSWIHFAKIFLYSFIMMLGVELVFFLANLFLEPTKLGYLIIIILGVTVGILIYGTITIKTRLADEFLGEIPEKLRRRVRFLR
>NZ_CP015817.1|WP_001566682.1|1113050_1114319_-|NAD(P)/FAD-dependent-oxidoreductase
MYQTIIIGGGPSGLMAAVAASEQSSSVLLIEKKKGLGRKLKISGGGRCNVTNRLPYAEIIKNIPGNGKFLYSPFSIFDNESIIDFFESRGVKLKEEDHGRMFPVSNKAQDVVDTLVTTIERQHVTIKEEEAVSRIEVNTDQTFTVHTQNNSYESHSLVIATGGTSVPQTGSTGDGYKFAKDLGHTITELFPTEVPITSAEPFIKSNRLKGLSLKDVELSVLKKNGKKRISHQMDMLFTHFGISGPAALRCSQFVYKEQKNQKTQHISMAIDAFPELNHEQLKQHITSLLSDTPDKIIKNSLHGLIEERYLLFMLEQAGIDENTTSHHLSNQQLNDLVNMFKGFVFKVNGTLPIDKAFVTGGGVSLKEIQPKTMMSKLVPGLFLCGEVLDIHGYTGGYNITSALVTGHVAGLYAGHYSHTSME
>NZ_CP015817.1|WP_049311740.1|1106373_1112934_+|LPXTG-anchored-repetitive-surface-protein-SasC
MNLLKKNKYSIRKYKVGIFSTLIGTVLLLSNPNGAQALTTDNNVQSDTNQATPVNSQDKDVANNRGLANSAQNTPNQSATTNQATNQALVNHNNGSIVNQATPTSVQSSTPSAQNNNHTDGNTTATETVSNANNNDAVSNNTTLNVPNKTNENGSGGHLTLKEIQEDVRHSSDKPELVAIAEPASNRPKKRSRRAAPADPNATPADPAAAAAGNGGAPVAITAPYTPTTDPNANNAGQNAPNEVLSFDDNGIRPSTNRSVPSVTVVDNLPGFTLINGGKVGVFSHAMVRTSMFDSGDAKNYQAQGNVIALGRIKGNDTNDHGDFNGIEKSLTVNPNSELIFEFNTMTTKNYQGVTNLIIKNADNDTVIAEKSVAYGPIWRLFKVPENVSHLKIQFVPKNDAITDARGIYQLRDGYKYYDFVDSIGLHSGSHVYVERRTMEPTATNNKEFTVTTSLKNNGNFGASFNTDDFVYKVQLPEGVEYVNNSLTKDFPSSNSGVDMNDFNVTYDAANRVITIKSTGGGSGNSPARLMPDKILDLKYKLRVNNVPTPRTVTFNDTLTYKTYTQDFINSPAESHTVSTNPYTIDIIMNKDALQAEVDRRIQQADYTFASLDIFNGLKRRAQTILDENRNNVPLNKRVSQADIDSLTNQMQHTLIRSVDAENAVNKKVDQMEDLVNQNDELTDEEKQAAIQVIEEHKNEIIGNIGDQTTDDGVTRIKDQGIQTLSGDTATPVVKPNAKKAIRDKATKQREIINATPDATEDEIQDALNQLATDETDAIDNVTNATTNADVGTAKNNGINTIGAVVPQVTHKKAARDAINQATATKRQQINSNREATQEEKNAALNELTQATNHALEQINQATTNADVDNAKGDGLNAINPIAPVTVVKQAARDAVSHDAQQHIAEINANPDATQEERQAAIDKVNAAVTAANTNILNANTNADVEQVKTNAIQGIQAITPATKVKTDAKNAIDKSAETQHNTIFNNNDATLEEQQAAQQLLDQAVATAKQNINAADTNQEVAQAKDQGTQNIVVIQPATQVKTDARNAVNDKAREAITNINATPGATREEKQEAINRVNTLKNRALTDIGVTSTTAMVNSIRDDAVNQIGAVQPHVTKKQTATGVLNDLATAKKQEINQNTDATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALAQINQHYNVKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATTAENNIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQLKDQAFNQINQNQTNDQVDATTNQAINAIDNVEAEVVIKPKAIADIEKAVKEKQQQIDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATNGVSAIKIIQPETKVKPAAREKINQKANELRAQINQDKEATAEERQAALDKINEFVNQAMTDITNNRTNQQVDDTTSQALDSIALVTPDHIVRAAARDAVKQQYEAKKREIEQAEHATDEEKQVALNQLANNEKRALQNIDQAIANNDVKRVESNGIATLKGVEPHIVVKPEAQQAIKASAENQVESIKDTPHATVDELDEANQLISDTLKQAQQEIENTNQDAAVTDVRNQTIKAIEQIKPKVRRKRAALDSIEENNKNQLDAIRNTLDTTQDERDVAIDTLNKIVNTIKNDIAQNKTNAEVDRTETDGNDNIKVILPKVQVKPAARQSVGVKAEAQNALIDQSDLSTEEERLAAKHLVEQALNQAIDQINHADKTAQVNQDSINAQNIISKIKPATTVKATALQQIQNIATNKINLIKANNEATDEEQNIAIAQVEKELIKAKQQIASAVTNADVAYLLHDEKNEIREIEPVISRKASAREQLTTLFNDKKQAIEANIQATVEERNSILAQLQNIYDTAIGQIDQDRSNAQVDKTASLNLQTIHDLDVHPIKKPDAEKTINDDLARVTALVQNYRKVSNRNKADALKAITALKLQMDEELKTARTNADVDAVLKRFNVALSDIEAVITEKENSLLRIDNIAQQTYAKFKAIATPEQLAKVKVLIDQYVADGNRMIDEDATLNDIKQHTQFIVDEILAIKLPAEATKVSPKEIQPAPKVCTPIKKEETHESRKVEKELPNTGSEGMDLPLKEFALITGAALLARRRTKNEKES
>NZ_CP015817.1|WP_000836463.1|1105736_1106048_+|rhodanese-like-domain-containing-protein
MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDHLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGDEGLEIKSI
>NZ_CP015817.1|WP_001566684.1|1103297_1105715_+|leucine--tRNA-ligase
MLNYNHNQIEKKWQDYWDENKTFKTNDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKKNIQTFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVIDGVSERGGHPVYRKPMKQWVLKITEYADQLLADLDDLDWPESLKDMQRNWIGRSEGAKVSFDVDNTEGKVEVFTTRPDTIYGASFLVLSPEHALVNSITTDEYKEKVKAYQTEASKKSDLERTDLAKDKSGVFTGAYAINPLSGEKVQIWIADYVLSTYGTGAIMAVPAHDDRDYEFAKKFDLPIIEVIEGGNVEEAAYTGEGKHINSGELDGLENEAAITKAIQLLEQKGAGEKKVNYKLRDWLFSRQRYWGEPIPVIHWEDGTMTTVPEEELPLLLPETDEIKPSGTGESPLANIDSFVNVVDEKTGMKGRRETNTMPQWAGSCWYYLRYIDPKNEKMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLYDLGIVPTKEPFQKLFNQGMILGEGNEKMSKSKGNVINPDDIVQSHGADTLRLYEMFMGPLDAAIAWSEKGLDGSRRFLDRVWRLMVNEDGTLSSKIVTTNNKSLDKVYNQTVKKVTEDFETLGFNTAISQLMVFINECYKVDEVYKPYIEGFVKMLAPIAPHIGEELWSKLGHEESITYQPWPTYDEALLVDDEVEIVVQVNGKLRAKIKIAKDTSKEEMQEIALSNDNVKASIEGKDIMKVIAVPQKLVNIVAK
>NZ_CP015817.1|WP_001025061.1|1101828_1103010_+|MFS-transporter
MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPILYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA
>NZ_CP015817.1|WP_000526540.1|1100765_1101719_-|TIGR01212-family-radical-SAM-protein
MGNHFQYAFENKRYHTWNYHLKNKFGQKIFKVALDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTHAPVEVLKEKFEPVLKEPGVVGLSIGTRPDCLPDDVVEYLADLNQRTYLWVELGLQTIHQSTSDLINRAHDMKTYYDGVAKLRKHNINVCTHIINGLPSEDYDMMMATAKEVAQMDVQGIKIHLLHLLKGTPMVKQYDKGLLTFMTQEEYTNLVVDQLEVIPPEMIVHRITGDGPIDIMVGPMWSVNKWEVLNGIDAELARRNSYQGLRYKSKVKQ
>NZ_CP015817.1|WP_000764419.1|1100205_1100769_-|class-I-SAM-dependent-methyltransferase
MKLERILPFSKTLIKQHITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSIVTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQFLNQRNHAPFICAIEKIS
>NZ_CP015817.1|WP_000265417.1|1118264_1119674_+|Mn(2+)-dependent-dipeptidase-Sapep
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
>NZ_CP015817.1|WP_000411085.1|1119677_1120526_+|D-amino-acid-transaminase
MEKIFLNGEFVSPSEAKVSYNDRGYVFGDGIYEYIRVYNGKLFTVTEHYERFLRSANEIGLDLNYSVEELIELSRKLVDMNQIETGAIYIQATRGVAERNHSFPTPEVEPAIVAYTKSYDRPYDHLENGVNGVTVEDIRWLRCDIKSLNLLGNVLAKEYAVKYNAVEAIQHRGETVTEGSSSNAYAIKDGVIYTHPINNYILNGITRIVIKKIAEDYNIPFKEETFTVDFLKNADEVIVSSTSAEVTPVIKLDGEPVNDGKVGPITRQLQEGFEKYIESHSI
>NZ_CP015817.1|WP_000434765.1|1121075_1121867_+|phosphotransferase-family-protein
MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAALSAEGIVPKLVWTKRIETGEVVTAQHWKNGRELSSNEMKQTRVAHLLKKIHNSRPLLSMLKRMEMEPITPEIMLNKINASLSREVLTHHIVRKSLTYLEEHIPSLDSRFFTVVHGDVNHNNWLLSDRDELFLVDWEGAMIADPAIDIGMLLYNYVPQQQWSEWLETYGVQESLNLNKRMKWYTVIQSIGLVQWYEEQKRYKDMNTWLKFLNEVMNSNMFI
>NZ_CP015817.1|WP_001266157.1|1121881_1122526_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRVRYKPWAEDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNPHINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWPKNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLHQEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
>NZ_CP015817.1|WP_001823213.1|1122996_1123839_+|MBL-fold-metallo-hydrolase
MKIGDISIHYLNGGNTKMDGGAMFGVVPKPLWSKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIITDLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEPVPGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKERMIPYFIQQQYWFLFYHDENYFAVKYSDDGENIDAYILRETLVDNN
>NZ_CP015817.1|WP_000163829.1|1123963_1124275_-|PepSY-domain-containing-protein
MTKLKYIIPTIIAVAIVIISTISIIQYINRKRYNPVKVLNEVKSYFMNVKGSYIVYEPFVHPETDKYRLVYQGGITTIKNGQNIHYDFYADAYTGEVINIVER
>NZ_CP015817.1|WP_001024576.1|1124361_1125438_+|M42-family-metallopeptidase
MNINKKVTLQRIQTLTELHGAPGFEEEVKNYMTQQMAPYVDEFIENRMGGFFGVKKSKNPNAKRVMIAAHMDEIGFMITNITKNGMIQFTNLGGVANDIWQGQRLVIKNRNGDKIIGVVSNIPKHFRTGSEGAPEIKDLTLDIGAQNEDEVRERGIDIGDTIVPHTPFTQLSEHRYSAKAWDNRYGCVLAIEILELLKDIELDVDLYVGANVQEEVGLRGAKASAEMIDPDVAFVVDCSPANDVKGNQPLSGELGKGTLIRIKDGTMILKPVFRDYLLKLVEAHDIEHQYYMSPGGTDGGEIHKANIGIPTAVIGVCARYIHSTDSVFDIRDYFAARSLLSEAICNLDNNQIETLQYK
>NZ_CP015817.1|WP_000811163.1|1125502_1125814_+|thioredoxin-family-protein
MKQLESEQQFESLKQGATVFEFTAGWCPDCRVIEPDLPELEARYPMFDFVSVDRDKFMDICIENGIMGIPSFLVYKNGELLGSYIGKERKSIEQIDAFLAQYV
>NZ_CP015817.1|WP_001091387.1|1125913_1126771_+|DUF1444-domain-containing-protein
MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSYRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFNKDK
>NZ_CP015817.1|WP_001048368.1|1126799_1127396_+|DUF4479-domain-containing-protein
MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAGFDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE

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Crispr_ID: NZ_CP015817_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_4

1689813-1689898

Unclear

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015817_4

>merge|NZ_CP015817|4|1689813-1689898|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>NZ_CP015817|4|4|1689813-1689898|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_001557331.1\|1676980_1679056_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235516
NZ_CP015817.1\|WP_000268754.1\|1692089_1692365_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NZ_CP015817.1\|WP_000426914.1\|1700321_1700555_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP015817.1\|WP_000687328.1\|1690661_1691399_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP015817.1\|WP_001261987.1\|1691398_1691902_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP015817.1\|WP_000531320.1\|1694192_1694525_-\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_CP015817.1\|WP_000672867.1\|1680274_1681519_-\|FemA/FemB-family-glycyltransferase-FmhC	unknown	unknown	gnl\|CDD\|367067
NZ_CP015817.1\|WP_000007687.1\|1694511_1695762_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP015817.1\|WP_001041667.1\|1681546_1682665_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366664
NZ_CP015817.1\|WP_000915244.1\|1687132_1689739_+\|lipoteichoic-acid-specific-glycosyltransferase-YfhO	unknown	unknown	gnl\|CDD\|226888
NZ_CP015817.1\|WP_000863479.1\|1692799_1694167_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP015817.1\|WP_000262696.1\|1695761_1699328_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_CP015817.1\|WP_000043237.1\|1699474_1700206_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP015817.1\|WP_000593192.1\|1679229_1680102_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NZ_CP015817.1\|WP_001020801.1\|1683821_1684988_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP015817.1\|WP_000110251.1\|1682891_1683800_-\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP015817.1\|WP_000195254.1\|1675517_1676825_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP015817.1\|WP_000181404.1\|1690208_1690559_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP015817.1\|WP_000176387.1\|1685096_1685864_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NZ_CP015817.1\|WP_000236715.1\|1685847_1686732_-\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_001557331.1\|1676980_1679056_-\|type-I-DNA-topoisomerase	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
NZ_CP015817.1\|WP_000268754.1\|1692089_1692365_-\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
NZ_CP015817.1\|WP_000426914.1\|1700321_1700555_-\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
NZ_CP015817.1\|WP_000687328.1\|1690661_1691399_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.98496e-164
NZ_CP015817.1\|WP_001261987.1\|1691398_1691902_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.02289e-68
NZ_CP015817.1\|WP_000531320.1\|1694192_1694525_-\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.84113e-47
NZ_CP015817.1\|WP_000672867.1\|1680274_1681519_-\|FemA/FemB-family-glycyltransferase-FmhC	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
NZ_CP015817.1\|WP_000007687.1\|1694511_1695762_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP015817.1\|WP_001041667.1\|1681546_1682665_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	1.58681e-14
NZ_CP015817.1\|WP_000915244.1\|1687132_1689739_+\|lipoteichoic-acid-specific-glycosyltransferase-YfhO	gnl\|CDD\|226888	COG4485, COG4485, Predicted membrane protein [Function unknown].	0
NZ_CP015817.1\|WP_000863479.1\|1692799_1694167_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP015817.1\|WP_000262696.1\|1695761_1699328_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_CP015817.1\|WP_000043237.1\|1699474_1700206_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	4.78039e-115
NZ_CP015817.1\|WP_000593192.1\|1679229_1680102_-\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	7.99896e-103
NZ_CP015817.1\|WP_001020801.1\|1683821_1684988_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP015817.1\|WP_000110251.1\|1682891_1683800_-\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP015817.1\|WP_000195254.1\|1675517_1676825_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP015817.1\|WP_000181404.1\|1690208_1690559_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70
NZ_CP015817.1\|WP_000176387.1\|1685096_1685864_-\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	9.05801e-95
NZ_CP015817.1\|WP_000236715.1\|1685847_1686732_-\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	2.28339e-159

>NZ_CP015817.1|WP_000915244.1|1687132_1689739_+|lipoteichoic-acid-specific-glycosyltransferase-YfhO
MLKKWLNSNVKQFFVITFISVILTLILFSTHIYDYIVNGTVFSGAGDGFRQMMPFQMYLYEHLSSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLFIKIGETVGIFNPTTIHFWPTNQLIMAMIRAIITFVVTFYLFKILHFKRSTNMIATILYGMSTVVIYFNFTWSFYGSLLYLLPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVSRTQKLICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGFYITISILTIVALLSFKLYRFYFYRLFAIVTWLLFIGSLSQYFDSAFNGFSFPERRWVYILALSSSALCGLFIQHLSTLNMKYYLIRTIPVSIIALLYVLLSPTHPLALIVGIILLMVLAVILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQLIKKINQNATGPFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPIDKNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYGFKIKSEHKDNKVRWIHSKNTIHYPSAHITNKVFSNKELKSPLDKEQAMLQGIVSNKTKDVNTHFKANKNLLSDSTIKLNSAAWQSPTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLTYKYRRFVTPVTIRIKASDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTKQGYTITKNKNSSGYIVLPTAYNQGMKATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYAPPYYYLLITITIFGIICSIIFTRWARQK
>NZ_CP015817.1|WP_000236715.1|1685847_1686732_-|ribosome-biogenesis-GTPase-YlqF
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQHDLARLKSHYNIEVPEDAEIIAWFDAIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
>NZ_CP015817.1|WP_000176387.1|1685096_1685864_-|ribonuclease-HII
MTLTIKEVKQLINAVNTIEELENHECFLDERKGVQNAIARRRKALEKEQALKEKYVEMTYFENEILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLDNALPQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDIGIMKEHRKSFEPIKSLL
>NZ_CP015817.1|WP_001020801.1|1683821_1684988_-|ADP-forming-succinate--CoA-ligase-subunit-beta
MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDPKEIEASKHDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDAGGSATREKVTEAFKIILGDENVKGIFVNIFGGIMKCDVIAEGIVEAVKEVDLTLPLVVRLEGTNVELGKKILKDSGLAIEPAATMAEGAQKIVKLVKEA
>NZ_CP015817.1|WP_000110251.1|1682891_1683800_-|succinate--CoA-ligase-subunit-alpha
MSVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGRKTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIYEALLTVNK
>NZ_CP015817.1|WP_001041667.1|1681546_1682665_-|LysM-peptidoglycan-binding-domain-containing-protein
MNKQQSKVRYSIRKVSIGILSISIGMFLALGMSNKAYADEIDKSKDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKLDNKSAISNGNEINQDIKISNTPKNSSQGNNLVINNNEPTKEIKIANLEAQNSNQKKTNKVTNNYFGYYSFREAPKTQIYTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKTKTVSSNNKSNSNSSTLNYLKTLENRGWDFDGSYGWQCFDLVNVYWNHLYGHGLKGYGAKDIPYANNFNSEAKIYHNTPTFKAEPGDLVVFSGRFGGGYGHTAIVLNGDYDGKLMKFQSLDQNWNNGGWRKAEVAHKVVHNYENDMIFIRPFKKA
>NZ_CP015817.1|WP_000672867.1|1680274_1681519_-|FemA/FemB-family-glycyltransferase-FmhC
MKFSTLSEEEFTNYTKKHFKHYTQSIELYNYRNKINHEAHIVGVKNDKNEVIAACLLTEARIFKFYKYFYSHRGPLLDYFDAKLVCYFFKELSKFIYKNRGVFILVDPYLIENLRDANGRIIKNYNNSVIVKMLGKIGYLHQGYTTGYSNKSQIRWISVLDLKDKDENQLLKEMEYQTRRNIKKTIEIGVKVEDLSIEETNRFYKLFQMAEEKHGFHFMNEDYFKRMQEIYKDKAMLKIACINLNEYQDKLKIQLLKIENEMMTVNRALNENPNSKKNKSKLNQLNMQLSSINNRISKTEELIFEDGPVLDLAAALFICTDDEVYYLSSGSNPKYNQYMGAYHLQWHMIKYAKSHNINRYNFYGITGVFSNEADDFGVQQFKKGFNAHVEELIGDFIKPVRPILYKFAKLIYKV
>NZ_CP015817.1|WP_000593192.1|1679229_1680102_-|DNA-protecting-protein-DprA
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYITYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHITIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI
>NZ_CP015817.1|WP_001557331.1|1676980_1679056_-|type-I-DNA-topoisomerase
MTLADNLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPVVKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKENRVVFNEITKDAVKESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSKRKASGKQGDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGDIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKEYFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNTKAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQYLVENKKGKTTQVICSNCDYKEAAQK
>NZ_CP015817.1|WP_000195254.1|1675517_1676825_-|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MTQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNGVGVLKEEMRRLNSIIIEAADKARVPAGGALAVDRHDFSGYITETLKNHENITVINEEINAIPDGYTIIATGPLTTETLAQEIVDITGKDQLYFYDAAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEGCMPFEVMAERGRKTLLFGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPRETMIGSMAYYISHAKNNKNFQPMNANFGLLPSLETRIKDKKERYEAQANRALDYLENFKKTL
>NZ_CP015817.1|WP_000181404.1|1690208_1690559_-|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR
>NZ_CP015817.1|WP_000687328.1|1690661_1691399_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>NZ_CP015817.1|WP_001261987.1|1691398_1691902_-|ribosome-maturation-factor-RimM
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>NZ_CP015817.1|WP_000268754.1|1692089_1692365_-|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>NZ_CP015817.1|WP_000863479.1|1692799_1694167_-|signal-recognition-particle-protein
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>NZ_CP015817.1|WP_000531320.1|1694192_1694525_-|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQQLEDLE
>NZ_CP015817.1|WP_000007687.1|1694511_1695762_-|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFATNKENEEVKSLTEEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGSK
>NZ_CP015817.1|WP_000262696.1|1695761_1699328_-|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLMELLENISNEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRVVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESVTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQSQQTKHQLKDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEAKLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAVFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>NZ_CP015817.1|WP_000043237.1|1699474_1700206_-|ribonuclease-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>NZ_CP015817.1|WP_000426914.1|1700321_1700555_-|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK

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Crispr_ID: NZ_CP015817_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_5

1779618-1779813

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTGCA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP015817_5

>merge|NZ_CP015817|5|1779618-1779813|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCACATTTTTGTAAGCTGACTTTTCGCCAGCTTCTATGTTGGGGCCCCCGCCAACTTGCATTGTTTGTTGGAATTGGTGATCCTATTTCTCTCTGTTGTGGCCCCGCCAACTTGCATTGTCTGTTGAAATTGGTGATCCAATTTCTCTATGTTGGGGCCCCGCCAACTTGCA

>NZ_CP015817|5|5|1779618-1779813|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCA	CATTTTTGTAAGCTGACTTTTCGCCAGCT
TCTATGTTGGGGCCCCCGCCAACTTGC	ATTGTTTGTTGGAATTGGTGATCCTATTTC
TCTCTGTTGTGGCCCCGCCAACTTGCA	TTGTCTGTTGAAATTGGTGATCCAATTTC
TCTATGTTGGGGCCCCGCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_001039659.1\|1785293_1786094_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP015817.1\|WP_000739572.1\|1782615_1783011_+\|formyl-peptide-receptor	unknown	unknown	gnl\|CDD\|171849
NZ_CP015817.1\|WP_001032814.1\|1779226_1779412_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_001791787.1\|1783903_1784071_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000041896.1\|1774719_1775436_+\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995
NZ_CP015817.1\|WP_000584398.1\|1781436_1781943_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_086353422.1\|1776935_1777895_+\|alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
NZ_CP015817.1\|WP_031775077.1\|1782991_1783063_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000739532.1\|1773066_1773792_+\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
NZ_CP015817.1\|WP_000791580.1\|1780680_1781178_-\|complement-convertase-inhibitor-Efb	unknown	unknown	gnl\|CDD\|289007
NZ_CP015817.1\|WP_000765708.1\|1776116_1776263_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000231632.1\|1778371_1778605_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_001802045.1\|1775935_1776160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000049484.1\|1784198_1784702_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|223695
NZ_CP015817.1\|WP_000793612.1\|1771627_1772629_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
NZ_CP015817.1\|WP_001063559.1\|1773886_1774612_+\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
NZ_CP015817.1\|WP_000739210.1\|1783380_1783710_-\|complement-convertase-inhibitor-Ecb	unknown	unknown	gnl\|CDD\|289007
NZ_CP015817.1\|WP_000669537.1\|1780176_1780527_-\|complement-inhibitor-SCIN-B	unknown	unknown	gnl\|CDD\|371594
NZ_CP015817.1\|WP_001074342.1\|1770672_1771605_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
NZ_CP015817.1\|WP_000659319.1\|1784694_1785282_-\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|184835

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_001039659.1\|1785293_1786094_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	2.38427e-134
NZ_CP015817.1\|WP_000739572.1\|1782615_1783011_+\|formyl-peptide-receptor	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	1.17946e-62
NZ_CP015817.1\|WP_086353422.1\|1776935_1777895_+\|alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	7.10005e-141
NZ_CP015817.1\|WP_000041896.1\|1774719_1775436_+\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.29441e-152
NZ_CP015817.1\|WP_000049484.1\|1784198_1784702_-\|metallophosphoesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	9.91823e-44
NZ_CP015817.1\|WP_000739210.1\|1783380_1783710_-\|complement-convertase-inhibitor-Ecb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.22818e-21
NZ_CP015817.1\|WP_000791580.1\|1780680_1781178_-\|complement-convertase-inhibitor-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.38388e-27
NZ_CP015817.1\|WP_000793612.1\|1771627_1772629_-\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
NZ_CP015817.1\|WP_001063559.1\|1773886_1774612_+\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	1.29834e-148
NZ_CP015817.1\|WP_000739532.1\|1773066_1773792_+\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	4.17321e-162
NZ_CP015817.1\|WP_000669537.1\|1780176_1780527_-\|complement-inhibitor-SCIN-B	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
NZ_CP015817.1\|WP_001074342.1\|1770672_1771605_-\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
NZ_CP015817.1\|WP_000659319.1\|1784694_1785282_-\|XTP/dITP-diphosphatase	gnl\|CDD\|184835	PRK14822, PRK14822, XTP/dITP diphosphatase.	6.07313e-114

>NZ_CP015817.1|WP_001032814.1|1779226_1779412_+|hypothetical-protein
MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>NZ_CP015817.1|WP_000231632.1|1778371_1778605_+|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>NZ_CP015817.1|WP_086353422.1|1776935_1777895_+|alpha-hemolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTSTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWIDRSSERYKIDWEKEEMTN
>NZ_CP015817.1|WP_000765708.1|1776116_1776263_-|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>NZ_CP015817.1|WP_001802045.1|1775935_1776160_-|hypothetical-protein
MLIQERGLKMTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>NZ_CP015817.1|WP_000041896.1|1774719_1775436_+|superantigen-like-protein-SSL12
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>NZ_CP015817.1|WP_001063559.1|1773886_1774612_+|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>NZ_CP015817.1|WP_000739532.1|1773066_1773792_+|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>NZ_CP015817.1|WP_000793612.1|1771627_1772629_-|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDNIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>NZ_CP015817.1|WP_001074342.1|1770672_1771605_-|carbamate-kinase
MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>NZ_CP015817.1|WP_000669537.1|1780176_1780527_-|complement-inhibitor-SCIN-B
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>NZ_CP015817.1|WP_000791580.1|1780680_1781178_-|complement-convertase-inhibitor-Efb
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>NZ_CP015817.1|WP_000584398.1|1781436_1781943_-|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>NZ_CP015817.1|WP_000739572.1|1782615_1783011_+|formyl-peptide-receptor
MKKNITKVIIASTVIATGLLTHSNDAKAFFSYEWKGLEIAKKLADDEKKDEERADRLIKDAEKERTYTGKTVEDLYVIAKKLGKGNTIAVVRIIDGGKNGYYTFDITRPLEEHRKNIKVVAKGEIDSITWY
>NZ_CP015817.1|WP_031775077.1|1782991_1783063_+|hypothetical-protein
MRLLGIKKHTELNSCTPNVRKQC
>NZ_CP015817.1|WP_000739210.1|1783380_1783710_-|complement-convertase-inhibitor-Ecb
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNLFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>NZ_CP015817.1|WP_001791787.1|1783903_1784071_-|hypothetical-protein
MKRIVILENVIVDNPIWLNHVDYLVKSVLLKSIKLRFQEVRKFEILVKIMNRIHI
>NZ_CP015817.1|WP_000049484.1|1784198_1784702_-|metallophosphoesterase
MSKWIIVSDNHTESGVLYQIYEMHPDADVYLHLGDSEFAYDDTELSLFNRVKGNCDFYPEFENEAVAKYNDVKAFYTHGHLYQVNRTRDLLAEKGLELGCLFAFYGHTHVAKYEYINGVHVINPGSISQSRSSMEETYAEVIIDDQTLHGTINFKNRHHETISHTTF
>NZ_CP015817.1|WP_000659319.1|1784694_1785282_-|XTP/dITP-diphosphatase
MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
>NZ_CP015817.1|WP_001039659.1|1785293_1786094_-|glutamate-racemase
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND

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Crispr_ID: NZ_CP015817_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_6

1798731-1798822

Orphan

Consensus_repeat	Method
CCTCTTTGATTTTTAATCATTAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015817_6

>merge|NZ_CP015817|6|1798731-1798822|CRISPRCasFinder
CCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGATTTTTAATCATTATA

>NZ_CP015817|6|6|1798731-1798822|CRISPRCasFinder
CCTCTTTGATTTTTAATCATTAGA	GGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTT
CCTCTTTGATTTTTAATCATTATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_000789821.1\|1808073_1808757_-\|heme-uptake-protein-IsdC	unknown	unknown	gnl\|CDD\|274705
NZ_CP015817.1\|WP_000818278.1\|1787144_1788911_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236319
NZ_CP015817.1\|WP_000079317.1\|1788962_1789577_-\|succinate-dehydrogenase-cytochrome-b558-subunit	unknown	unknown	gnl\|CDD\|239577
NZ_CP015817.1\|WP_000390529.1\|1789900_1791682_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP015817.1\|WP_001566586.1\|1805144_1806113_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
NZ_CP015817.1\|WP_000003566.1\|1801443_1802502_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP015817.1\|WP_001246696.1\|1806997_1808074_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_001242420.1\|1804348_1805083_-\|class-B-sortase	unknown	unknown	gnl\|CDD\|226898
NZ_CP015817.1\|WP_000670950.1\|1804006_1804330_-\|staphylobilin-forming-heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|139480
NZ_CP015817.1\|WP_000908992.1\|1799041_1801444_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP015817.1\|WP_000234068.1\|1796635_1797157_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|224205
NZ_CP015817.1\|WP_000435384.1\|1802881_1803622_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP015817.1\|WP_000046704.1\|1797157_1797424_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|172616
NZ_CP015817.1\|WP_001249305.1\|1792492_1794841_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NZ_CP015817.1\|WP_001788625.1\|1791847_1791943_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_001018928.1\|1792005_1792320_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP015817.1\|WP_000160836.1\|1808965_1810018_+\|LPXTG-anchored-heme-scavenging-protein-IsdA	unknown	unknown	gnl\|CDD\|227676
NZ_CP015817.1\|WP_001220199.1\|1806122_1807001_-\|heme-ABC-transporter-substrate-binding-protein-IsdE	unknown	unknown	gnl\|CDD\|274706
NZ_CP015817.1\|WP_000161940.1\|1794850_1796563_-\|DNA-polymerase/3'-5'-exonuclease-PolX	unknown	unknown	gnl\|CDD\|236311
NZ_CP015817.1\|WP_000139712.1\|1786329_1787145_-\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181515

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_000789821.1\|1808073_1808757_-\|heme-uptake-protein-IsdC	gnl\|CDD\|274705	TIGR03656, IsdC, heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain, which confers the ability to bind heme, and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.	2.0626e-97
NZ_CP015817.1\|WP_000818278.1\|1787144_1788911_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236319	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP015817.1\|WP_000079317.1\|1788962_1789577_-\|succinate-dehydrogenase-cytochrome-b558-subunit	gnl\|CDD\|239577	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.37018e-87
NZ_CP015817.1\|WP_000390529.1\|1789900_1791682_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP015817.1\|WP_001566586.1\|1805144_1806113_-\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.24727e-61
NZ_CP015817.1\|WP_000003566.1\|1801443_1802502_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP015817.1\|WP_001242420.1\|1804348_1805083_-\|class-B-sortase	gnl\|CDD\|226898	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown].	2.78558e-128
NZ_CP015817.1\|WP_000670950.1\|1804006_1804330_-\|staphylobilin-forming-heme-oxygenase-IsdG	gnl\|CDD\|139480	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG.	3.35893e-67
NZ_CP015817.1\|WP_000908992.1\|1799041_1801444_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP015817.1\|WP_000160836.1\|1808965_1810018_+\|LPXTG-anchored-heme-scavenging-protein-IsdA	gnl\|CDD\|227676	COG5386, COG5386, Cell surface protein [Cell envelope biogenesis, outer membrane].	8.33511e-123
NZ_CP015817.1\|WP_000435384.1\|1802881_1803622_-\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	3.43228e-78
NZ_CP015817.1\|WP_000046704.1\|1797157_1797424_-\|cell-division-protein-ZapA	gnl\|CDD\|172616	PRK14126, PRK14126, cell division protein ZapA; Provisional.	1.04877e-21
NZ_CP015817.1\|WP_001249305.1\|1792492_1794841_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NZ_CP015817.1\|WP_000234068.1\|1796635_1797157_-\|CvpA-family-protein	gnl\|CDD\|224205	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only].	4.13485e-29
NZ_CP015817.1\|WP_001018928.1\|1792005_1792320_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.26685e-48
NZ_CP015817.1\|WP_001220199.1\|1806122_1807001_-\|heme-ABC-transporter-substrate-binding-protein-IsdE	gnl\|CDD\|274706	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.	9.77537e-156
NZ_CP015817.1\|WP_000161940.1\|1794850_1796563_-\|DNA-polymerase/3'-5'-exonuclease-PolX	gnl\|CDD\|236311	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX.	0
NZ_CP015817.1\|WP_000139712.1\|1786329_1787145_-\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|181515	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	0

>NZ_CP015817.1|WP_000046704.1|1797157_1797424_-|cell-division-protein-ZapA
MAQFKNKVNVSINDQLFTIVGEDNPEHIRYVAHLVDDKIKELGYKAAGLDTSRKAILTAVNIMHEKVLLEEENRRLKQQIHKLQQREQ
>NZ_CP015817.1|WP_000234068.1|1796635_1797157_-|CvpA-family-protein
MVIDFIIIIFFVYFVIVGFRRGFWLSMIHLSATIVSLWIASQFYKSIVERLIVFIPYPKTTAFNTTFAFHFNHLQNRFEAIVAFLMITLFCKFILYLIIVTFDKIIAYQNIHIFSRAMGMIVGVFMTIIVLHFTLYLLALYPNEALQHQLKISIVSHSLIFHIPYLSAFTINL
>NZ_CP015817.1|WP_000161940.1|1794850_1796563_-|DNA-polymerase/3'-5'-exonuclease-PolX
MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQEEVPEGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDRYPIDQMRRLNQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGVDFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFDKDLSNIITIDDINGDIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSEIDIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIEQLMALAEETNTVLEINANPHRLDLNADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKDFIENNIKLKK
>NZ_CP015817.1|WP_001249305.1|1792492_1794841_-|endonuclease-MutS2
MRQKTLDVLEFEKIKSLVANETISDLGLEKVSQMMPATNFETVVFQMEETDEIAQIYNKHRLPSLSGLSKVSAFIHRADIGGVLNVSELNLIKRLIQVQNQFKTFYNQLVEEDEGVKYPILDDKMNQLPVLTDLFQQINETCDTYDLYDNASYELQGIRSKISSTNQRIRQNLDRIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEMNNQISRLRHDEAIEKERILTQLTGYVAADKDALLVAEQVMGQLDFLIAKARYSRSIKGTKPIFKEERTVYLPKAYHPLLNRETVVANTIEFMEDIETVIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLSTFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLVMATTHYPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEKEINEMIESLEHNYKRVETQRLELDRLVKEAEQVHDDLSKQYQQFQNYEKSLIEEAKEKANQKIKAATKEADDIIKDLRQLREQKGADVKEHELIDKKKRLDDHYEAKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLEIVNDEEAIVQMGIIKMKLPIEDLEKKQKEKVKPTKMVTRQNRQTIKTELDLRGYRYEDALIELDQYLDQAVLSNYEQVYIIHGKGTGALQKGVQQHLKKHKSVSDFRGGMPSEGGFGVTVATLK
>NZ_CP015817.1|WP_001018928.1|1792005_1792320_-|thioredoxin
MAIVKVTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL
>NZ_CP015817.1|WP_001788625.1|1791847_1791943_+|hypothetical-protein
MLDYHLTFIDLLIPPFSSRKQYDDLSFNFLY
>NZ_CP015817.1|WP_000390529.1|1789900_1791682_-|excinuclease-ABC-subunit-UvrC
MEDYKQRIKNKLNVVPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGAHDAKTTRLVGEIRRFEFIVTSSETESLLLELNLIKQYQPRYNILLKDDKSYPFIKITKEKYPRLLVTRTVKQGTGKYFGPYPNAYSAQETKKLLDRIYPYRKCDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTKEITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPRNLDKEMIQSVVDTKIVQPARGPKKDMVDLAAHNAKVSLNNKFELISRDESRTIKAIEELGTQMGIQTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIKTVKGPDDYKSMREVVRRRYSRVLNEGLPLPDLIIVDGGKGHMNGVIDVLQNELGLDIPVAGLQKNDKHQTSELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNIGIPENVAKNLHEQLHK
>NZ_CP015817.1|WP_000079317.1|1788962_1789577_-|succinate-dehydrogenase-cytochrome-b558-subunit
MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVEFLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRLQKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRVFTWVSLIVFLVISYIGVTAIIAFM
>NZ_CP015817.1|WP_000818278.1|1787144_1788911_-|succinate-dehydrogenase-flavoprotein-subunit
MAEKHLIVVGGGLAGLMSTIKAAEKGAHVDLFSVVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPVKAMTEAAPKIIHLLDRMGVMFNRTNEGLLDFRRFGGTLHHRTAYAGATTGQQLLYALDEQVRAYEVDGLVTKYEGWEFLGIVKGDDDSARGIVAQNMTTAEIETFGSDAVIMATGGPGIIFGKTTNSMINTGSAASIVYQQGAIYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPDYGNLVPRDIATREIFDVCINQKLGINGENMVYLDLSHKDPHELDVKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLYVDYDQMTNIKGLFAAGECDFSQHGGNRLGANSLLSAIYGGTVAGPNAIDYISNIDRSYTDMDESIFEKRKAEEQERFDKLLAMRGTENAYKLHRELGEIMTANVTVVRENEKLLETDKKIVELMKRYEDIDMEDTQTWSNQAVFFTRQLWNMLVLARVITIGAYNRNESRGAHYKPEFPERNDEEWLKTTMASFQGAFEKPQFTYDDVDVSLIPPRKRDYTSKSKGGKK
>NZ_CP015817.1|WP_000139712.1|1786329_1787145_-|succinate-dehydrogenase-iron-sulfur-subunit
MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIRRNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFPVIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEVCPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPKGIPLTTSIAAMNRETTFHMFKSFFGSDHEVE
>NZ_CP015817.1|WP_000908992.1|1799041_1801444_-|phenylalanine--tRNA-ligase-subunit-beta
MLISNEWLKEYVTIDDSVSNLAERITRTGIEVDDLIDYTKDIKNLVVGFVKSKEKHPDADKLNVCQVDIGEDEPVQIVCGAPNVDAGQYVIVAKVGGRLPGGIKIKRAKLRGERSEGMICSLQEIGISSNYIPKSFESGIYVFSESQVPGTDALQALYLDDQVMEFDLTPNRADALSMIGTAYEVAALYNTKMTKPETTSNELELSANDELTVTIENEDKVPYYSARVVHDVTIEPSPIWMQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDAIGSQQIVVRQANEGEKMTTLDDTERELLTSDIVITNGQTPIALAGVMGGDFSEVKEQTSNIVIEGAIFDPVSIRHTSRRLNLRSESSSRFEKGIATEFVDEAVDRACYLLQTYANGKVLKDRVSSGELGAFITPIDITADKINRTIGFDLSQNDIVTIFNQLGFDTEINDDVITVQVPSRRKDITIKEDLIEEVARIYGYDDIPSTLPVFEKVTSGQLTDRQYKTRMVKEVLEGAGLDQAITYSLVSKEDATAFAMQQRQTIDLLMPMSEAHASLRQSLLPHLIEAASYNVARKNKDVKLFEIGNVFFANGEGELPDQVEYLSGILTGDYVVNQWQGKKETVDFYLAKGVVDRVSEKLNLEFSYRRADIDGLHPGRTAEILLENKVVGFIGELHPTLAADNDLKRTYVFELNFDALMAVSVGYINYQPIPRFPGMSRDIALEVDQNIPAADLLSTIHAHGGNILKDTLVFDVYQGEHLEKGKKSIAIRLNYLDTEETLTDERVSKVQAEIEAALIEQGAVIR
>NZ_CP015817.1|WP_000003566.1|1801443_1802502_-|phenylalanine--tRNA-ligase-subunit-alpha
MSEQQTMSELKQQALVDINEANDERALQEVKVKYLGKKGSVSGLMKLMKDLPNEEKPAFGQKVNELRQTIQNELDERQQMLVKEKLNKQLAEETIDVSLPGRHIEIGSKHPLTRTIEEIEDLFLGLGYEIVNGYEVEQDHYNFEMLNLPKSHPARDMQDSFYITDEILLRTHTSPVQARTMESRHGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNVKMSDLKGTLELLAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSSEYSGFAFGMGPDRIAMLKYGIEDIRHFYTNDVRFLDQFKAVEDRGDM
>NZ_CP015817.1|WP_000435384.1|1802881_1803622_-|RNA-methyltransferase
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPVRLDQQIIAYAQEVFEINMKVAESLSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLKG
>NZ_CP015817.1|WP_000670950.1|1804006_1804330_-|staphylobilin-forming-heme-oxygenase-IsdG
MKFMAENRLTLTKGTAKDIIERFYTRHGIETLEGFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDWLKSDVFKAAHKHVRSKNEDESSPIINNKVITYDIGYSYMK
>NZ_CP015817.1|WP_001242420.1|1804348_1805083_-|class-B-sortase
MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS
>NZ_CP015817.1|WP_001566586.1|1805144_1806113_-|iron-ABC-transporter-permease
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLITKFTTGNNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLEILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLIYLICQSQRNRI
>NZ_CP015817.1|WP_001220199.1|1806122_1807001_-|heme-ABC-transporter-substrate-binding-protein-IsdE
MRIIKYLTILVISVVILTSCQSSSSQESTKSGEFRIVPTTVALTMTLDKLDLPIVGKPTSYKTLPNRYKDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQKKHPKVLILMGVPGSYLVATDKSYIGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDIILRLPHGMPEEVKKMFQKEFKQNDIWKHFKAVKNNHVYDLEEVPFGITANVDADKAMTQLYDLFYKDKK
>NZ_CP015817.1|WP_001246696.1|1806997_1808074_-|hypothetical-protein
MRNVKQIATKSIIAIISLGILTYTTMIGSVLADEIKYPSAKFNQPEAKDKTELTTSIFDEKIKENKALELLIFNQENKNVTEEQKLVDEKAQLISDMTGKIYLQVKLKGQIDKEQLVFQNDKNEEFPFVIKDEKDDTIVRILIEQHMDKINMHVKTLAEKKNLDNKEMVYSIHFKEKKVQHDDAKEVPSKHQNQENNQDQLKKDIDDKKDSQKSDTKERRTSLFTEKGLNDIPVQKDKVQQDSNKKIENERPKASGTLKVENSPPTIKKVENNHKEQPKHKDEKSKKEKKKVVEKEKALPAFNRDDDSKNSSQLSSDIKELDEPNHKKQYILFAAGIVLATILLISAHLYSRKRGNQV
>NZ_CP015817.1|WP_000789821.1|1808073_1808757_-|heme-uptake-protein-IsdC
MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKIDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGTTTGQSESNSSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE
>NZ_CP015817.1|WP_000160836.1|1808965_1810018_+|LPXTG-anchored-heme-scavenging-protein-IsdA
MTKHYLNSKYQSEQRSSAIKKITMGTASIILGSLVYIGADSQQVNAATEATNATNNQSTQVSQATSQPINFQVQKDGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYKFYNANNQELATTVVNDNKKADTRTINVAVEPGYKSLTTKVHIVVPQINYNHRYTTHLEFEKAIPTLADAAKPNNVKPVQPKPAQPKTPTEQTKPVQPKVEKVKPTVTTTSKVEDNHSTKVVSTDTTKDQTKTQTAHTVKTAQTAQEQNKVQTPVKDVATAKSESNNQAVSDNKSQQTNKVTKHNETPKQASKAKELPKTGLTSVDNFISTVAFATLALLGSLSLLLFKRKESK

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Crispr_ID: NZ_CP015817_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_7

1894983-1895182

Orphan

Consensus_repeat	Method
AATCCTGATAACCCTAACAATCC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP015817_7

>merge|NZ_CP015817|7|1894983-1895182|CRISPRCasFinder
CAACCTAATAACCCAGATAATCCTGATAACCCTAACAATCCTGATAACCCTAACAATCCTGATAACCCTAACAATCCTGATAACCCTAACAATCCTGATAACCCTAACAACCCAGATGAACCAAATAATCCGGACAACCCTAACAACCCTGATAATCCAGACAATGGCGATAACAATAATTCAGACAACCCTGACGCTGC

>NZ_CP015817|7|7|1894983-1895182|CRISPRCasFinder
CAACCTAATAACCCAGATAATCC	TGATAACCCTAACAATCCTGAT
AACCCTAACAATCCTGATAACCC	TAACAATCCTGATAACCCTAAC
AATCCTGATAACCCTAACAACCC	AGATGAACCAAATAATCCGGAC
AACCCTAACAACCCTGATAATCC	AGACAATGGCGATAACAAT
AATTCAGACAACCCTGACGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_001788579.1\|1890524_1890635_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000526688.1\|1898657_1900331_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|224087
NZ_CP015817.1\|WP_000671245.1\|1882515_1883709_-\|teichoic-acid-D-Ala-esterase-FmtA	unknown	unknown	gnl\|CDD\|365903
NZ_CP015817.1\|WP_020978112.1\|1903845_1903977_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000070970.1\|1901860_1902799_+\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_CP015817.1\|WP_000202433.1\|1891233_1892244_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226122
NZ_CP015817.1\|WP_001797236.1\|1881700_1881979_+\|cytochrome-aa3-quinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|225667
NZ_CP015817.1\|WP_000184947.1\|1897053_1897875_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NZ_CP015817.1\|WP_000150222.1\|1897867_1898671_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
NZ_CP015817.1\|WP_000620949.1\|1902850_1903402_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP015817.1\|WP_000867357.1\|1903566_1903782_+\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225196
NZ_CP015817.1\|WP_001089095.1\|1895267_1896449_+\|cysteine-protease-staphopain-B	unknown	unknown	gnl\|CDD\|368490
NZ_CP015817.1\|WP_000278012.1\|1890661_1891081_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP015817.1\|WP_000190620.1\|1900317_1901679_-\|isochorismate-synthase-MenF	unknown	unknown	gnl\|CDD\|224091
NZ_CP015817.1\|WP_000088431.1\|1885424_1885895_+\|DUF2538-family-protein	unknown	unknown	gnl\|CDD\|287742
NZ_CP015817.1\|WP_000491985.1\|1886049_1886484_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP015817.1\|WP_000284457.1\|1896486_1896816_+\|staphostatin-B	unknown	unknown	gnl\|CDD\|370248
NZ_CP015817.1\|WP_049311666.1\|1886711_1890455_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226656
NZ_CP015817.1\|WP_000777577.1\|1892439_1893594_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|236075
NZ_CP015817.1\|WP_001031979.1\|1884159_1885377_+\|polyisoprenyl-teichoic-acid--peptidoglycan-teichoic-acid-transferase	unknown	unknown	gnl\|CDD\|224235

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_000526688.1\|1898657_1900331_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|224087	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism].	0
NZ_CP015817.1\|WP_000671245.1\|1882515_1883709_-\|teichoic-acid-D-Ala-esterase-FmtA	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.32794e-60
NZ_CP015817.1\|WP_000070970.1\|1901860_1902799_+\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	6.56788e-124
NZ_CP015817.1\|WP_000202433.1\|1891233_1892244_+\|acyltransferase-family-protein	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	3.66029e-78
NZ_CP015817.1\|WP_001797236.1\|1881700_1881979_+\|cytochrome-aa3-quinol-oxidase-subunit-IV	gnl\|CDD\|225667	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion].	6.51974e-26
NZ_CP015817.1\|WP_000184947.1\|1897053_1897875_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NZ_CP015817.1\|WP_000150222.1\|1897867_1898671_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.38602e-122
NZ_CP015817.1\|WP_000620949.1\|1902850_1903402_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.44645e-08
NZ_CP015817.1\|WP_001089095.1\|1895267_1896449_+\|cysteine-protease-staphopain-B	gnl\|CDD\|368490	pfam05543, Peptidase_C47, Staphopain peptidase C47. Staphopains are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme.	5.29513e-107
NZ_CP015817.1\|WP_000867357.1\|1903566_1903782_+\|TM2-domain-containing-protein	gnl\|CDD\|225196	COG2314, XynA, Predicted membrane protein [Function unknown].	1.26488e-08
NZ_CP015817.1\|WP_000190620.1\|1900317_1901679_-\|isochorismate-synthase-MenF	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	5.84817e-168
NZ_CP015817.1\|WP_049311666.1\|1886711_1890455_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	2.1962e-84
NZ_CP015817.1\|WP_000491985.1\|1886049_1886484_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	1.32597e-23
NZ_CP015817.1\|WP_000284457.1\|1896486_1896816_+\|staphostatin-B	gnl\|CDD\|370248	pfam09023, Staphostatin_B, Staphostatin B. Staphostatin B inhibits the cysteine protease Staphopain B, produced by Staphylococcus aureus, by blocking the active site of the enzyme. The domain adopts an eight-stranded mixed beta-barrel structure, with a deviation from the up-down topology of canonical beta-barrels in the amino-terminal part of the molecule.	3.73097e-61
NZ_CP015817.1\|WP_000278012.1\|1890661_1891081_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.73126e-19
NZ_CP015817.1\|WP_000777577.1\|1892439_1893594_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|236075	PRK07683, PRK07683, aminotransferase A; Validated.	1.12933e-171
NZ_CP015817.1\|WP_001031979.1\|1884159_1885377_+\|polyisoprenyl-teichoic-acid--peptidoglycan-teichoic-acid-transferase	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	3.10092e-79
NZ_CP015817.1\|WP_000088431.1\|1885424_1885895_+\|DUF2538-family-protein	gnl\|CDD\|287742	pfam10804, DUF2538, Protein of unknown function (DUF2538). This family of proteins has no known function.	4.64019e-106

>NZ_CP015817.1|WP_000777577.1|1892439_1893594_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKLSLNSNSKYLRAPSIRQFSNRMNNLDDCVNLTIGQPDFPMPDVVKKAYIDAINNDKTSYSHNKGLLETREAISQYFKNRYHFSYDPEEIIVTNGASEAIDTTLRSIIEPGDEIIIPGPIYAGYIPLIEVLGGKPIYIDTTATQFKITPDALESHISPKTKAVLLNYPTNPTGVVLKRNEVLNIVNVLKKYPIFIISDEIYAENTFSGKHVSFAEFEDIRDQLILIGGLSKSHSATGIRIGFLLGPQYLIDKLTFMHAYNCICANVPAQIACITALNEGLEAPKYMNEAYVERRNYLVSELTKLGFEITAQPEGAFYIFPSIKHITDDDFEFCVDLLESTHLAIVPGSSFTEFGKGFVRISYAYEMDVLKEGMKRLAKYLNTK
>NZ_CP015817.1|WP_000202433.1|1891233_1892244_+|acyltransferase-family-protein
MTSLKERDYFFDNARAILILLVVFGHMLQPYTSGDKYLSALYLVIYSFHMPTFLFISGYFAKNIDKPYYLEKISKRLIVPYMIFFAFFSIYYFLTGKSDELQLDPFNPVFALWFLITLFFFHVILVIVRRFNPYKVLSVSIIISIGAGFSDNIDSYLSISRTIVFFPIFYLGYIFTKKHTAIFKNKKLIPVSIITFILFFIIYVIHPINADWLLGSSPYTSLENEGQSIFSPFKRLILYGIILIAMTAFLNLMSTKKKLYTYIGSRTLYVYLLHGLIIGIVRGFEWYPFDNPISLMTYLYLISISVIIVYVLSTNFVCKWTNPIINLQRPSQFKDS
>NZ_CP015817.1|WP_000278012.1|1890661_1891081_-|MarR-family-transcriptional-regulator
MYKQLEKLITLTNNDLNLVNRRFGQRTDITSEQLELLRILFNYDRLSQYDLTMKISREQSIVSRWIKKLVLKGYITSQQSSDDLRCKELILTDQARTLISQINNARCELIEARCQCLSEVELDNLNQLLDKLNQRRISL
>NZ_CP015817.1|WP_001788579.1|1890524_1890635_-|hypothetical-protein
MSLCTQQKLNHELQAKVAVIVKIDGKQSPLFLLVYV
>NZ_CP015817.1|WP_049311666.1|1886711_1890455_+|glucosaminidase-domain-containing-protein
MAKKFNYKLPSMVALTLVGSAVTAHQVQAAETTQDQTTNKNVLDSNKVKATTEQAKAEVKNPTQNISGTQVYQDPAIVQPKTANNKTGNAQVNGDTRANQSATTNNTQPVAKSTSTTAPKTNTNVTNAGYSLVDDEDDNSENQINPELIKSAAKPVALETQYKAAAPKAATTTAPKAKTEATPKVTTFSASAQPRSVAATPKTSLPKYKPQVNSSINDYIRKNNLKAPKIEEDYTSYFPKYAYRNGVGRPEGIVVHDTANDRSTINGEISYMKNNYQNAFVHAFVDGDRIIETAPTDYLSWGVGAVGNPRFINVEIVHTHDYASFARSMNNYADYAATQLQYYGLKPDSAEYDGNGTVWTHYAVSKYLGGTDHADPHGYLRSHNYSYDQLYDLINEKYLIKMGKVAPWGTQSTTTPTTPSKPTTPSKPSTGKLTVAANNGVAQIKPTNSGLYTTVYDKTGKATNEVQKTFAVSKTATLGNQKFYLVQDYNSGNKFGWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGNQTFKASKQQQIDKSIYLYGSVNGKSGWVSKAYLVDTAKPTPTPTPKPSTPTTNNKLTVSSLNGVAQINAKNNGLFTTVYDKTGKPTKEVQKTFAVTKEASLGGNKFYLVKDYNSPTLIGWVKQGDVIYNNAKSPVNVMQTYTVKPGTKLYSVPWGTYKQEAGAVSGTGNQTFKATKQQQIDKSIYLFGTVNGKSGWVSKAYLAVPAAPKKAVAQPKTAVKAYTVTKPQTTQTVSKIAQVKPNNTGIRASVYEKTAKNGAKYADRTFYVTKERAHGNETYVLLNNTSHNIPLGWFNVKDLNVQNLGKEVKTTQKYTVNKSNNGLSMVPWGTKNQVILTGNNIAQGTFNATKQVSVGKDVYLYGTINNRTGWVNAKDLTAPTAVKPTTSAAKDYNYTYVIKNGNGYYYVTPNSDTAKYSLKAFNEQPFAVVKEQVINGQTWYYGKLSNGKLAWIKSTDLAKELIKYNQTGMTLNQVAQIQAGLQYKPQVQRVPGKWTDANFNDVKHAMDTKRLAQDPALKYQFLRLDQPQNISIDKINQFLKGKGVLENQGAAFNKAAQMYGINEVYLISHALLETGNGTSQLAKGADVVNNKVVTNSNTKYHNVFGIAAYDNDPLREGIKYAKQAGWDTVSKAIVGGAKFIGNSYVKAGQNTLYKMRWNPAHPGTHQYATDVDWANINAKIIKGYYDKIGEVGKYFDIPQYK
>NZ_CP015817.1|WP_000491985.1|1886049_1886484_+|GNAT-family-N-acetyltransferase
MFSKVNNQKMLEDCFYIRKKVFVEEQGVPEESEIDEYESESIHLIGYDNGQPVATARIRPINETTVKIERVAVMKSHRGQGMGRILMQAVESLAKDEGFYVATMNAQCHAIPFYESLNFKMRGNIFLEEGIEHIEMTKKLTSLN
>NZ_CP015817.1|WP_000088431.1|1885424_1885895_+|DUF2538-family-protein
MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
>NZ_CP015817.1|WP_001031979.1|1884159_1885377_+|polyisoprenyl-teichoic-acid--peptidoglycan-teichoic-acid-transferase
MNKFLKYFLILLALVLIVVPIVFATLLFKTSQDAFESSQDSKNANRQSNLRDNKVNPEEQPISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQSKHQIRMLSIPRDTISYIPKVGYYDKITHAHAYGGPIAAMDSVEATMNVPVDYYVRVNMKAFVEAVNELGGIYYDVPYDLNEPNTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRGQRQMELIKILFQKAQEVDSIDKLDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVEIKTAQLKGKDDMLNGIYYYHPSVESIQKYANLLRKDLELSPINDKNDFLDQRVINHYGSLIPLTPLDSSLLRKEQNDTTDKDKTSYENNDSTNNSDSSNQQQPATDQNLNQNQGGTQQAPQASNNQNGVVN
>NZ_CP015817.1|WP_000671245.1|1882515_1883709_-|teichoic-acid-D-Ala-esterase-FmtA
MKFNKVKLVIHACVLLFIIISIALIFHRLQTKTHSIDPIHKETKLSDNEKYLVDRNKEKVAPSKLKEVYNSKDPKYKKIDKYLQSSLFNGSVAIYENGKLKMSKGYGYQDFEKGIKNTPNTMFLIGSAQKFSTGLLLKQLEEEHKININDPVSKYLPWFKTSKPIPLKDLMLHQSGLYKYKSSKDYKNLDQAVKAIQKRGIDPKKYKKHMYNDGNYLVLAKVIEEVTGKSYAENYYTKIGDPLKLQHTAFYDEQPFKKYLAKGYAYNSTGLSFLRPNILDQYYGAGNLYMTPTDMGKLITQIQQYKLFSPKITNPLLHEFGTKQYPDEYRYGFYAKPTLNRLNGGFFGQVFTVYYNDKYVVVLALNVKGNNEVRIKHIYNDILKQNKPYNTKGVIVQ
>NZ_CP015817.1|WP_001797236.1|1881700_1881979_+|cytochrome-aa3-quinol-oxidase-subunit-IV
MKHTVGFIASIVLTLLAVYVTLYTSLTFHAKLTIIFGFAFVQAGLQLLMFMHLTEGKDGRLQTFKVIFALVITLCFVVGTYWVMQGGHSSHL
>NZ_CP015817.1|WP_001089095.1|1895267_1896449_+|cysteine-protease-staphopain-B
MNSSYKSRVFNIISIIMVSMLILSLGAFANNNKAKADSHSKQLEINVKSDKVPQKVKDLAQQQFAGYAKALDKQSNAKTGKYELGEAFKIYKFNGEEDNSYYYPVIKDGKIVYTLTLSPKNKDDLNKSKEDMNYSVKISNFIAKDLDQIKDKNSNITVLTDEKGFYFEEDGKVRLVKATPLPGNVKEKESAKTVSSKLKQELKNTVTPAKVEENEAIQEDQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCSTFPNQMIEYGKSQGRDIHYQEGVPSYEQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY
>NZ_CP015817.1|WP_000284457.1|1896486_1896816_+|staphostatin-B
MYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSIDNEEIIYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV
>NZ_CP015817.1|WP_000184947.1|1897053_1897875_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MTNRQWETLREYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQFPKFP
>NZ_CP015817.1|WP_000150222.1|1897867_1898671_-|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MTHYNYYEANVETNQVLVLLHGFLSDSRTYYNHIDKYTDICHVITIDLPGHGEDQSSMDETWNFDYITTLLDRILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQSQLELPVEIQHQIRLQRLSQSPQKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKKMANLIPNSKCKLISATGHTIHVEDSDEFDTMILGFLKEEQND
>NZ_CP015817.1|WP_000526688.1|1898657_1900331_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MGNHKAALTKQVFTFASELYAYGVREVVISPGSRSTPLALAFEAHPNIKTWIHPDERSAAFFAVGLIKGSERPVAILCTSGTAAANYTPAIAESQISRIPLIVLTSDRPHELRSVGAPQAINQVNMFNNYVSYEFDMPIADDSKETIDAIYYQMQIASQYLYGPHKGPIHFNLPFRDPLTPDLNATELLTSEMKILPHYQKSIDASALRHILNKKKGLIIVGDMQHQEVDQILTYSTIYDLPILADPLSHLRKFDHPNVICTYDLLFRSGLDLNVDFVIRVGKPVISKKLNQWLKKTDAFQILVQNNDKIDVFPIAPDISYEISANDFFRSLMEDTTVNRVSWLEKWQRLEKKGRKEIKCYLEQATDESAFVGELIKKTSEKDALFISNSMPIRDVDNLLLNKNIDVYANRGANGIDGIVSTALGMAVHKRITLLIGDLSFYHDMNGLLMSKLNNIQMNIVLLNNDGGGIFSYLPQKESATDYFERLFGTPTGLDFEYTAKLYQFDFKRFNSVSEFKNATLLSETSTIYELITNREDNFKQHQILYQKLSEMIHDTL
>NZ_CP015817.1|WP_000190620.1|1900317_1901679_-|isochorismate-synthase-MenF
MATGVLEDDIVKEIYGSSKEWVSVEVKLSQSLDPSTLFHLTDNEAGDRFYMRLNDNRTSYFGYKAIQLFKNNSKNKQSIFKDWEKLKHNITFIHPQSEKHHLRVVGGFQFSSHKSDDEWREFGLNHFVLPEVLISTDKNGTFLTYTVKRESFTVEALNDLMDLFNNISDIDVDEQIGEITRNEDIYKDDWRQLVVEAIESINNEEKIVLARRRLIKFDKDISIPYILKQAYSKEKNSYIFLLESQDSIFFSQTPEQLIKVNNKILSTKAVAGTIKRSQDEDEDTKNVEAFLKDNKNLIEHRFVVDSILHDIKPYITELHYDKTPKILKNDHLYHLYTEIKAPLKDDSYISLIDNLHPTPALGGYPKEFAMDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKKAQATLFAGCGIVKDSDPDSELAETNLKFTPMMNALGVDMNGKS
>NZ_CP015817.1|WP_000070970.1|1901860_1902799_+|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MSNQYQQYSTVKKYWHLMRPHTLTASVVPVLVGTAASKIYFLGSEDHIKISLFIAMLLACLLIQAATNMFNEYYDYKKGLDDHESVGIGGAIVRNGMSPELVLRLAIAFYILAAILGLFLAANSSFWLLPVGLVCMAVGYLYTGGPFPISWTPFGELFSGVFMGMFIIVIAFFIQTGNIQSYVIWLSVPIVITIGLINMANNIRDRVKDKASGRKTLPILLSKNASLTFMAIMYFIAYAFIVLTIIIKPGGSLFYLLALLSFPMPVKVIRRFKKNDTPPTMMPAMAAAGKTNTFFGLLYALGIYISALFAGI
>NZ_CP015817.1|WP_000620949.1|1902850_1903402_-|GNAT-family-N-acetyltransferase
MIRQARPEDRFDIAKLVYMVWDDMELELVKHLPKDMVLDAIEKSCVDATYRTFYQHILVYEVENKVAGCIISYSGENELKYEKAWELLDLPEEIKQYGTPLPVKEAKDDEYYIETIATFAAYRGRGIATKLLTSLLESNTHVKWSLNCDINNEAALKLYKKVGFISDGQIELYKHMYHHLIVK
>NZ_CP015817.1|WP_000867357.1|1903566_1903782_+|TM2-domain-containing-protein
MKVNKAIYVIVALFLGGLGIHKFYADKFGQGLFHLLFFWTGIPTIISIIHAIFVIFTKKADKDGYIIFPKN
>NZ_CP015817.1|WP_020978112.1|1903845_1903977_+|hypothetical-protein
MRYVTMRQFIKRIVKTILVGYVIKFIRNKLSGKSSHPTDNKHN

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Crispr_ID: NZ_CP015817_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_8

1993453-1993531

Orphan

Consensus_repeat	Method
CCAGCCTCTGTGTTGGGGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015817_8

>merge|NZ_CP015817|8|1993453-1993531|CRISPRCasFinder
CCAGCCTCTGTGTTGGGGCCCCGCCAACTTGCACACTATTGTAAGCTGACTTTCCACCAGCCTCTGTGTTGGGGCCCCG

>NZ_CP015817|8|8|1993453-1993531|CRISPRCasFinder
CCAGCCTCTGTGTTGGGGCCCCG	CCAACTTGCACACTATTGTAAGCTGACTTTCCA
CCAGCCTCTGTGTTGGGGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_000007967.1\|1986877_1987453_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP015817.1\|WP_000066053.1\|1990654_1992034_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP015817.1\|WP_000054609.1\|1999959_2002365_+\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
NZ_CP015817.1\|WP_000402803.1\|2002785_2003127_+\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497
NZ_CP015817.1\|WP_000670752.1\|1977399_1978302_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP015817.1\|WP_001566566.1\|1982121_1985598_-\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NZ_CP015817.1\|WP_000573077.1\|2003119_2004616_+\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
NZ_CP015817.1\|WP_001081626.1\|2002357_2002786_+\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
NZ_CP015817.1\|WP_000660040.1\|1989459_1990665_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP015817.1\|WP_000711896.1\|1985757_1986333_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP015817.1\|WP_000154935.1\|1978467_1982121_-\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP015817.1\|WP_001067294.1\|1997995_1998373_-\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224023
NZ_CP015817.1\|WP_000035058.1\|1998788_1999382_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238908
NZ_CP015817.1\|WP_000185321.1\|1992275_1993205_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NZ_CP015817.1\|WP_000138487.1\|1993655_1994900_-\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_CP015817.1\|WP_000838029.1\|1996506_1997634_-\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
NZ_CP015817.1\|WP_000167314.1\|1995008_1996199_-\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
NZ_CP015817.1\|WP_000758209.1\|1986348_1986873_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP015817.1\|WP_000148852.1\|1987777_1989109_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
NZ_CP015817.1\|WP_000781162.1\|1999445_1999829_+\|kinase-associated-lipoprotein-B	unknown	unknown	gnl\|CDD\|378054

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_000007967.1\|1986877_1987453_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.01759e-40
NZ_CP015817.1\|WP_000066053.1\|1990654_1992034_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP015817.1\|WP_000054609.1\|1999959_2002365_+\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP015817.1\|WP_000402803.1\|2002785_2003127_+\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	9.82501e-64
NZ_CP015817.1\|WP_000670752.1\|1977399_1978302_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.0042e-87
NZ_CP015817.1\|WP_001566566.1\|1982121_1985598_-\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP015817.1\|WP_000573077.1\|2003119_2004616_+\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP015817.1\|WP_001081626.1\|2002357_2002786_+\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
NZ_CP015817.1\|WP_000660040.1\|1989459_1990665_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP015817.1\|WP_000711896.1\|1985757_1986333_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	7.44791e-54
NZ_CP015817.1\|WP_000154935.1\|1978467_1982121_-\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP015817.1\|WP_001067294.1\|1997995_1998373_-\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
NZ_CP015817.1\|WP_000035058.1\|1998788_1999382_-\|peptidylprolyl-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65
NZ_CP015817.1\|WP_000185321.1\|1992275_1993205_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	6.83944e-151
NZ_CP015817.1\|WP_000138487.1\|1993655_1994900_-\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP015817.1\|WP_000838029.1\|1996506_1997634_-\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
NZ_CP015817.1\|WP_000167314.1\|1995008_1996199_-\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
NZ_CP015817.1\|WP_000758209.1\|1986348_1986873_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.81012e-49
NZ_CP015817.1\|WP_000148852.1\|1987777_1989109_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP015817.1\|WP_000781162.1\|1999445_1999829_+\|kinase-associated-lipoprotein-B	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	8.96507e-53

>NZ_CP015817.1|WP_000185321.1|1992275_1993205_+|glycerophosphodiester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEQADMLRLNKYGVDGVFTNFADKYKEVIK
>NZ_CP015817.1|WP_000066053.1|1990654_1992034_+|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPGYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>NZ_CP015817.1|WP_000660040.1|1989459_1990665_+|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDAADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>NZ_CP015817.1|WP_000148852.1|1987777_1989109_-|glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEDNIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>NZ_CP015817.1|WP_000007967.1|1986877_1987453_-|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLVVFWIVGKKLEQHFMGSKKE
>NZ_CP015817.1|WP_000758209.1|1986348_1986873_-|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDHDNNQHDSRQFGLIDKKDIIGNISLRYYPFSKWTIQFKS
>NZ_CP015817.1|WP_000711896.1|1985757_1986333_-|signal-peptidase-I
MKKELLEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKHNFNPENTKN
>NZ_CP015817.1|WP_001566566.1|1982121_1985598_-|helicase-exonuclease-AddAB-subunit-AddB
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFNQLYRFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDETMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNINIDDEFGGEQ
>NZ_CP015817.1|WP_000154935.1|1978467_1982121_-|helicase-exonuclease-AddAB-subunit-AddA
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAGAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNGYEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>NZ_CP015817.1|WP_000670752.1|1977399_1978302_-|fumarylacetoacetate-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVEKLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK
>NZ_CP015817.1|WP_000138487.1|1993655_1994900_-|Glu/Leu/Phe/Val-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>NZ_CP015817.1|WP_000167314.1|1995008_1996199_-|ornithine--oxo-acid-transaminase
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>NZ_CP015817.1|WP_000838029.1|1996506_1997634_-|NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELIPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>NZ_CP015817.1|WP_001067294.1|1997995_1998373_-|S1-RNA-binding-domain-containing-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>NZ_CP015817.1|WP_000035058.1|1998788_1999382_-|peptidylprolyl-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>NZ_CP015817.1|WP_000781162.1|1999445_1999829_+|kinase-associated-lipoprotein-B
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHERKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>NZ_CP015817.1|WP_000054609.1|1999959_2002365_+|Na+/H+-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASQANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTIFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>NZ_CP015817.1|WP_001081626.1|2002357_2002786_+|Na(+)/H(+)-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>NZ_CP015817.1|WP_000402803.1|2002785_2003127_+|Na(+)/H(+)-antiporter-subunit-C
MEIIMIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>NZ_CP015817.1|WP_000573077.1|2003119_2004616_+|Na+/H+-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK

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Crispr_ID: NZ_CP015817_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_9

2208955-2209044

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP015817_9

>merge|NZ_CP015817|9|2208955-2209044|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCT

>NZ_CP015817|9|9|2208955-2209044|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_000370928.1\|2210979_2211837_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP015817.1\|WP_001802298.1\|2209379_2209484_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000160304.1\|2199438_2200149_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP015817.1\|WP_000495681.1\|2207846_2208938_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000083807.1\|2215404_2216943_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_CP015817.1\|WP_001792784.1\|2210163_2210322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000334465.1\|2212918_2214724_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP015817.1\|WP_001024095.1\|2205461_2206127_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP015817.1\|WP_049311693.1\|2216977_2219110_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP015817.1\|WP_000019743.1\|2206600_2207581_+\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_CP015817.1\|WP_001127960.1\|2204089_2205028_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP015817.1\|WP_000908189.1\|2211904_2212687_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP015817.1\|WP_001123303.1\|2200912_2201326_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP015817.1\|WP_000070866.1\|2200269_2200713_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP015817.1\|WP_000123393.1\|2201783_2203157_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP015817.1\|WP_001292149.1\|2219121_2219556_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_CP015817.1\|WP_086353434.1\|2220980_2228435_-\|DUF1542-domain-containing-protein	unknown	unknown	gnl\|CDD\|275089
NZ_CP015817.1\|WP_000808817.1\|2203828_2204059_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000003755.1\|2206278_2206599_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP015817.1\|WP_000648743.1\|2219555_2220662_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_000370928.1\|2210979_2211837_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.99434e-58
NZ_CP015817.1\|WP_000160304.1\|2199438_2200149_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
NZ_CP015817.1\|WP_001292149.1\|2219121_2219556_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_CP015817.1\|WP_000083807.1\|2215404_2216943_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_CP015817.1\|WP_000334465.1\|2212918_2214724_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP015817.1\|WP_001024095.1\|2205461_2206127_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
NZ_CP015817.1\|WP_049311693.1\|2216977_2219110_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.08382e-67
NZ_CP015817.1\|WP_000019743.1\|2206600_2207581_+\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.20197e-108
NZ_CP015817.1\|WP_001127960.1\|2204089_2205028_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
NZ_CP015817.1\|WP_000908189.1\|2211904_2212687_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	3.34326e-106
NZ_CP015817.1\|WP_001123303.1\|2200912_2201326_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
NZ_CP015817.1\|WP_000070866.1\|2200269_2200713_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
NZ_CP015817.1\|WP_000123393.1\|2201783_2203157_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
NZ_CP015817.1\|WP_086353434.1\|2220980_2228435_-\|DUF1542-domain-containing-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	8.11058e-108
NZ_CP015817.1\|WP_000003755.1\|2206278_2206599_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.83702e-17
NZ_CP015817.1\|WP_000648743.1\|2219555_2220662_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0

>NZ_CP015817.1|WP_000495681.1|2207846_2208938_+|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKETTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_CP015817.1|WP_000019743.1|2206600_2207581_+|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHAH
>NZ_CP015817.1|WP_000003755.1|2206278_2206599_+|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEIHTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_CP015817.1|WP_001024095.1|2205461_2206127_-|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>NZ_CP015817.1|WP_001127960.1|2204089_2205028_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_CP015817.1|WP_000808817.1|2203828_2204059_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_CP015817.1|WP_000123393.1|2201783_2203157_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRISNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_CP015817.1|WP_001123303.1|2200912_2201326_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_CP015817.1|WP_000070866.1|2200269_2200713_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_CP015817.1|WP_000160304.1|2199438_2200149_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>NZ_CP015817.1|WP_001802298.1|2209379_2209484_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_CP015817.1|WP_001792784.1|2210163_2210322_+|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>NZ_CP015817.1|WP_000370928.1|2210979_2211837_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITTFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_CP015817.1|WP_000908189.1|2211904_2212687_-|ABC-transporter-ATP-binding-protein
MLIQLDQVGRMKQGKTILKNISWQINGGDKWILYGLNGAGKTTLLNILNAYEPATTGDVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSESYPTLAMIYVTHFIEEITSNFTKILLLKDGKSVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_CP015817.1|WP_000334465.1|2212918_2214724_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP015817.1|WP_000083807.1|2215404_2216943_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP015817.1|WP_049311693.1|2216977_2219110_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISSMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDAINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMVLITVLEEPLILPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_CP015817.1|WP_001292149.1|2219121_2219556_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_CP015817.1|WP_000648743.1|2219555_2220662_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGGGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITIEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>NZ_CP015817.1|WP_086353434.1|2220980_2228435_-|DUF1542-domain-containing-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPTAQPAAPANQGQPAVQPANQGGQANPAGGAAQPNTQPAGQGNQADPNNAAQAQPGNQATPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAAQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKGAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDAKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEISKIENITDSTQTKMDAYNEVKQAATARKAQNATVSNATNEEVAEADAAVDAAQKQGLHDIQVVKSKQEVADTKSKVIDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKQAAYTELDTKKQEARTNLDAANTNSDVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNATANTDVDNAKTTNEATIAAITPDANVKPQAKQAIADKVQAQETAIDANNGSTTEEKTAAKQQAQTEKTTADAAIDAAHTNAEVEAAKNAEIAKIEAIQPATTTKDNAKEAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITTILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQATQTNVINNDQNATTEEKEAAIQQLATAVTDAKNNITAATDDNGVDQAKDAGKNSIQSTQPATAVKSNAKNDVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKENAIQAIDPIQASTDVKTNARAELLTEMQNKITEILSDNTTTNEEKGKDIEPVRATYEEGLNNINTANTTGDVTTAKDTAVQKVQQLHANPVKKPAGKTALDQAAADRKTQIEQTPNASQQEINDAKQEVDAALNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIADAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKETATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALESINNGVDNGDVDDALTQGKAAIDAIQVDATVKPKANQAIEVKAEDTKESINQSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGIDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQTSVGPVANNKAKDMQTNDMKASLATVSNGSNSANQDMLNVTNTDDHQAKTKSAQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRSTKKDQQTEE

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Crispr_ID: NZ_CP015817_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_10

2322405-2322604

Orphan

Consensus_repeat	Method
CTTCTATGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of NZ_CP015817_10

>merge|NZ_CP015817|10|2322405-2322604|CRT
CTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTATGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>NZ_CP015817|10|1|2322405-2322604|CRT
CTTCTATGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCAC
CTTCTATGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAAT
TCTCTATGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAG
CTTCTGTGTTGGGGCCCCGCCAACTTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_000913018.1\|2329103_2329709_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226628
NZ_CP015817.1\|WP_000866971.1\|2324393_2324627_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|340452
NZ_CP015817.1\|WP_000051210.1\|2310961_2311126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000230173.1\|2322745_2323768_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|274250
NZ_CP015817.1\|WP_001161085.1\|2311370_2311688_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000076929.1\|2327929_2328934_-\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|181084
NZ_CP015817.1\|WP_000643988.1\|2323787_2324387_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP015817.1\|WP_000259731.1\|2325574_2326834_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP015817.1\|WP_000066900.1\|2321702_2322053_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
NZ_CP015817.1\|WP_000134527.1\|2326896_2327391_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP015817.1\|WP_000592297.1\|2313849_2317017_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP015817.1\|WP_001566779.1\|2318787_2319039_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000503820.1\|2327392_2327899_-\|molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|223595
NZ_CP015817.1\|WP_031866192.1\|2322178_2322364_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000808495.1\|2324632_2325079_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP015817.1\|WP_000184405.1\|2320389_2321601_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP015817.1\|WP_000951058.1\|2319956_2320397_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP015817.1\|WP_000602932.1\|2325092_2325578_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
NZ_CP015817.1\|WP_000413865.1\|2317133_2318399_-\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
NZ_CP015817.1\|WP_000600971.1\|2319030_2319795_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_000913018.1\|2329103_2329709_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	2.82843e-115
NZ_CP015817.1\|WP_000866971.1\|2324393_2324627_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
NZ_CP015817.1\|WP_000230173.1\|2322745_2323768_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
NZ_CP015817.1\|WP_000066900.1\|2321702_2322053_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
NZ_CP015817.1\|WP_000076929.1\|2327929_2328934_-\|ThiF-family-adenylyltransferase	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	3.67241e-132
NZ_CP015817.1\|WP_000643988.1\|2323787_2324387_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
NZ_CP015817.1\|WP_000951058.1\|2319956_2320397_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
NZ_CP015817.1\|WP_000134527.1\|2326896_2327391_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	1.34747e-97
NZ_CP015817.1\|WP_000592297.1\|2313849_2317017_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP015817.1\|WP_000503820.1\|2327392_2327899_-\|molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	9.7838e-65
NZ_CP015817.1\|WP_000808495.1\|2324632_2325079_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.99133e-58
NZ_CP015817.1\|WP_000184405.1\|2320389_2321601_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.65046e-73
NZ_CP015817.1\|WP_000259731.1\|2325574_2326834_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	1.46788e-157
NZ_CP015817.1\|WP_000602932.1\|2325092_2325578_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	1.51621e-50
NZ_CP015817.1\|WP_000413865.1\|2317133_2318399_-\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	4.8324e-143
NZ_CP015817.1\|WP_000600971.1\|2319030_2319795_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	9.47288e-38

>NZ_CP015817.1|WP_031866192.1|2322178_2322364_+|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNDLECDINVKEPLKIYYVVIFGSGTEITFSQNLFR
>NZ_CP015817.1|WP_000066900.1|2321702_2322053_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>NZ_CP015817.1|WP_000184405.1|2320389_2321601_+|MFS-transporter
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETKVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>NZ_CP015817.1|WP_000951058.1|2319956_2320397_+|winged-helix-DNA-binding-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>NZ_CP015817.1|WP_000600971.1|2319030_2319795_-|VOC-family-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSERVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFAIETVIVKSKNQSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>NZ_CP015817.1|WP_001566779.1|2318787_2319039_+|hypothetical-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLAIIHMGILAHSTYVYLY
>NZ_CP015817.1|WP_000413865.1|2317133_2318399_-|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMKTSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>NZ_CP015817.1|WP_000592297.1|2313849_2317017_-|efflux-RND-transporter-permease-subunit
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTFAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVVTIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVIVKQNKQTDWSEDKLNNITLKKPTGGTIKLGNIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>NZ_CP015817.1|WP_001161085.1|2311370_2311688_+|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>NZ_CP015817.1|WP_000051210.1|2310961_2311126_+|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>NZ_CP015817.1|WP_000230173.1|2322745_2323768_-|GTP-3',8-cyclase-MoaA
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>NZ_CP015817.1|WP_000643988.1|2323787_2324387_-|molybdenum-cofactor-guanylyltransferase-MobA
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>NZ_CP015817.1|WP_000866971.1|2324393_2324627_-|molybdopterin-converting-factor-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>NZ_CP015817.1|WP_000808495.1|2324632_2325079_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>NZ_CP015817.1|WP_000602932.1|2325092_2325578_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>NZ_CP015817.1|WP_000259731.1|2325574_2326834_-|molybdopterin-molybdotransferase-MoeA
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVRDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>NZ_CP015817.1|WP_000134527.1|2326896_2327391_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSNQ
>NZ_CP015817.1|WP_000503820.1|2327392_2327899_-|molybdenum-cofactor-biosynthesis-protein-MoaB
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>NZ_CP015817.1|WP_000076929.1|2327929_2328934_-|ThiF-family-adenylyltransferase
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKYRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>NZ_CP015817.1|WP_000913018.1|2329103_2329709_-|ATP-binding-cassette-domain-containing-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWKIPIIFVTHSNYEAEQMAHEIITIG

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Crispr_ID: NZ_CP015817_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015817_11

2751077-2751212

Orphan

Consensus_repeat	Method
TTTCGTCGTCCCACCCCAACTTGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP015817_11

>merge|NZ_CP015817|11|2751077-2751212|CRISPRCasFinder
TTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAACTGGGAATTCAATTTCTCTTTGTCGTCCCACCCCAACTTGCACATTATTGTAGGCTGACTTTCCGCCAGCTTCTTTGTTGGGGCCCCGCCAACTTGCA

>NZ_CP015817|11|10|2751077-2751212|CRISPRCasFinder
TTTCGTCGTCCCACCCCAACTTGCA	TTGTCTGTAGAAACTGGGAATTCAATTTCT
CTTTGTCGTCCCACCCCAACTTGCA	CATTATTGTAGGCTGACTTTCCGCCAGCTTC
TTTGTTGGGGCCCCGCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015817.1\|WP_162489093.1\|2754172_2754325_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015817.1\|WP_000240580.1\|2748699_2749005_+\|intracellular-adhesion-protein-D	unknown	unknown	gnl\|CDD\|188447
NZ_CP015817.1\|WP_000723835.1\|2749860_2750913_+\|polysaccharide-intercellular-adhesin-biosynthesis/export-protein-IcaC	unknown	unknown	gnl\|CDD\|226446
NZ_CP015817.1\|WP_000653261.1\|2746773_2747334_-\|ica-operon-transcriptional-regulator-IcaR	unknown	unknown	gnl\|CDD\|376089
NZ_CP015817.1\|WP_000565310.1\|2743789_2744557_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226870
NZ_CP015817.1\|WP_000944142.1\|2759959_2760574_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|172153
NZ_CP015817.1\|WP_000659677.1\|2745262_2745925_-\|capsular-polysaccharide-biosynthesis-protein-CapA	unknown	unknown	gnl\|CDD\|226453
NZ_CP015817.1\|WP_001159430.1\|2747497_2748736_+\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|274866
NZ_CP015817.1\|WP_000842036.1\|2751359_2753402_-\|YSIRK-domain-containing-triacylglycerol-lipase-Lip1	unknown	unknown	gnl\|CDD\|224001
NZ_CP015817.1\|WP_000301927.1\|2742575_2743052_-\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|235497
NZ_CP015817.1\|WP_000640266.1\|2757140_2757719_-\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|153419
NZ_CP015817.1\|WP_000244280.1\|2743054_2743555_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP015817.1\|WP_000170492.1\|2754484_2755117_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	unknown	unknown	gnl\|CDD\|235067
NZ_CP015817.1\|WP_000635624.1\|2756565_2757144_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|171871
NZ_CP015817.1\|WP_000639186.1\|2757687_2758701_-\|histidinol-phosphate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223157
NZ_CP015817.1\|WP_000930650.1\|2758716_2759967_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|172308
NZ_CP015817.1\|WP_000571737.1\|2755868_2756573_-\|1-(5-phosphoribosyl)-5-((5--phosphoribosylamino)methylideneamino)imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|172156
NZ_CP015817.1\|WP_000185863.1\|2744553_2745246_-\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP015817.1\|WP_000877369.1\|2749001_2749874_+\|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase	unknown	unknown	gnl\|CDD\|188448
NZ_CP015817.1\|WP_000592600.1\|2755113_2755872_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996

Protein	Function_ID	Function_description	E-value
NZ_CP015817.1\|WP_000240580.1\|2748699_2749005_+\|intracellular-adhesion-protein-D	gnl\|CDD\|188447	TIGR03932, IcaD_partial, intracellular adhesion protein D. Members of this protein family are IcaD (intracellular adhesion protein D), which with catalytic subunit IcaA forms an N-acetylglucosaminyltransferase. In the absence of IcaC, this enzyme forms N-acetylglucosamine oligomers up to 20 in length. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	3.14464e-30
NZ_CP015817.1\|WP_000723835.1\|2749860_2750913_+\|polysaccharide-intercellular-adhesin-biosynthesis/export-protein-IcaC	gnl\|CDD\|226446	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism].	1.1329e-114
NZ_CP015817.1\|WP_000653261.1\|2746773_2747334_-\|ica-operon-transcriptional-regulator-IcaR	gnl\|CDD\|376089	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain. IcaR belongs to the tetracycline repressor (TetR) family of proteins, which are involved in a wide variety of gene regulations. It binds to a 42 bp region immediately upstream of the icaA gene. This entry represents the C-terminal domain which is involved in dimerization.	2.88245e-28
NZ_CP015817.1\|WP_000565310.1\|2743789_2744557_-\|tyrosine-protein-phosphatase	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.38228e-144
NZ_CP015817.1\|WP_000944142.1\|2759959_2760574_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|172153	PRK13584, hisG, ATP phosphoribosyltransferase.	8.56054e-134
NZ_CP015817.1\|WP_000659677.1\|2745262_2745925_-\|capsular-polysaccharide-biosynthesis-protein-CapA	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	1.17617e-89
NZ_CP015817.1\|WP_001159430.1\|2747497_2748736_+\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|274866	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase. Members of this protein family are biofilm-forming enzymes that polymerize N-acetyl-D-glucosamine residues in beta(1,6) linkage. One named members is IcaA (intercellular adhesin protein A), an enzyme that acts (with aid of subunit IcaD) in Polysaccharide Intercellular Adhesin (PIA) biosynthesis in Staphylococcus epidermis). The homologous member in E. coli is designated PgaC. Members are often encoded next to a polysaccharide deacetylase and involved in biofilm formation. Note that chitin, although also made from N-acetylglucosamine, is formed with beta-1,4 linkages.	0
NZ_CP015817.1\|WP_000842036.1\|2751359_2753402_-\|YSIRK-domain-containing-triacylglycerol-lipase-Lip1	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.58472e-82
NZ_CP015817.1\|WP_000301927.1\|2742575_2743052_-\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|235497	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase.	9.37152e-105
NZ_CP015817.1\|WP_000640266.1\|2757140_2757719_-\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|153419	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and some eubacteria while they are encoded as bifunctional enzymes in other eubacteria, such that the enzyme is fused to histidinol-phosphate phosphatase, the penultimate enzyme of the histidine biosynthesis pathway. The histidine biosynthesis pathway is a potential target for development of herbicides, and IGPD is a target for the triazole phosphonate herbicides.	2.40504e-103
NZ_CP015817.1\|WP_000244280.1\|2743054_2743555_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.52546e-13
NZ_CP015817.1\|WP_000170492.1\|2754484_2755117_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	gnl\|CDD\|235067	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE.	1.98613e-110
NZ_CP015817.1\|WP_000635624.1\|2756565_2757144_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|171871	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	2.23848e-128
NZ_CP015817.1\|WP_000639186.1\|2757687_2758701_-\|histidinol-phosphate-aminotransferase-family-protein	gnl\|CDD\|223157	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism].	5.60546e-84
NZ_CP015817.1\|WP_000930650.1\|2758716_2759967_-\|histidinol-dehydrogenase	gnl\|CDD\|172308	PRK13770, PRK13770, histidinol dehydrogenase; Provisional.	0
NZ_CP015817.1\|WP_000571737.1\|2755868_2756573_-\|1-(5-phosphoribosyl)-5-((5--phosphoribosylamino)methylideneamino)imidazole-4--carboxamide-isomerase	gnl\|CDD\|172156	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional.	6.62111e-168
NZ_CP015817.1\|WP_000185863.1\|2744553_2745246_-\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	2.83977e-84
NZ_CP015817.1\|WP_000877369.1\|2749001_2749874_+\|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase	gnl\|CDD\|188448	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase. A common motif in bacterial biosynthesis of polysaccharide for export is modification that follows polymerization. This model describes a subfamily of polysaccharide N-deacetylases that acts on poly-beta-1,6-N-acetyl-D-glyscosamine as produced by Staphylococcus epidermidis and S. aureus. The end product in these species is designated polysaccharide intercellular adhesin (PIA), and this gene designated icaB (intercellular adhesion protein B). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Cellular processes, Pathogenesis].	9.91129e-151
NZ_CP015817.1\|WP_000592600.1\|2755113_2755872_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	1.02989e-154

>NZ_CP015817.1|WP_000723835.1|2749860_2750913_+|polysaccharide-intercellular-adhesin-biosynthesis/export-protein-IcaC
MKKIRLELVYLRAIICAIIIITHLLTQITLKHENMEGGSLVLQFYIRNIVIFGTPCFIILSQLLTTLNYQKVTYRYLTTRVKYILIPYILMGLFYSYSESLLTDSSFNKQFIENVLLGQWYGYFIVVIMQFFILSYIIFKINYNLFNSKILLLLSFILQQSFLYYFTNNTAFHDTVLHYYPLSENTIIFGWIFYFFLGAYMGYNYERVLNFLERYLVIMIVLAVATYFVFIALANGDYWNVTSFSYSLTPYNSIMFIVILGICTHFKTMLFNTIQMISAFSFFIYLLHPIILDSLFAYTNIFEDNTIVFLAISLLFILGLCIGVGMILREFYIFRFIIGKQPYKLNINAY
>NZ_CP015817.1|WP_000877369.1|2749001_2749874_+|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase
MKYRKLIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENSALALNYHRVRKANFLNNFIYFFSSSKEIKNYSVSQSQFESQIKWLKSHDAKFLTLKEFLYYKKKGKFPKRSVWINFDDMDETIYENAYPILKKYKIPATGFIITGHVGEENFHNLDMISKKELKEMYKTGLWEFETHTHDLHNLSKNNKSKLMKASEATIIKDLNKSEKYLTKNFKKSQKTIAYPYGLMNDDKLPVIKKAGLKYGFSLEEKAVTPNSNDYYIPRILISDDAFEHLIKRWDGFHEKD
>NZ_CP015817.1|WP_000240580.1|2748699_2749005_+|intracellular-adhesion-protein-D
MVKPRQREYPTLKSSLNIVRETALIAISCVFWIYCLVVLLVYIGTIFEIHDESINTIRVALNIENTEILDIFETMGIFAIIIFVFFTISILIQKWQRGRES
>NZ_CP015817.1|WP_001159430.1|2747497_2748736_+|poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MQFFNFLLFYPVFMSIYWIVGSIYFYFTREIRYSLNKKPDINVDELEGITFLLACYNESETIEDTLSNVLALKYEKKEIIIINDGSSDNTAELIYKIKENNDFIFVDLQENRGKANALNQGIKQASYDYVMCLDADTIVDQDAPYYMIENFKHDPKLGAVTGNPRIRNKSSILGKIQTIEYASLIGCIKRSQTLAGAVNTISGVFTLFKKSAVVDVGYWDTDMITEDIAVSWKLHLRGYRIKYEPLAMCWMLVPETLGGLWKQRVRWAQGGHEVLLRDFFSTMKTKRFPLYILMFEQIISILWVYIVLLYLGYLFITANFLDYTFMTYSFSIFLLSSFTMTFINVIQFTVALFIDSRYEKKNMAGLIFVSWYPTVYWIINAAVVLVAFPKALKRKKGGYATWSSPDRGNTQR
>NZ_CP015817.1|WP_000653261.1|2746773_2747334_-|ica-operon-transcriptional-regulator-IcaR
MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLLNIFLKK
>NZ_CP015817.1|WP_000659677.1|2745262_2745925_-|capsular-polysaccharide-biosynthesis-protein-CapA
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNRISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
>NZ_CP015817.1|WP_000185863.1|2744553_2745246_-|polysaccharide-biosynthesis-tyrosine-autokinase
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
>NZ_CP015817.1|WP_000565310.1|2743789_2744557_-|tyrosine-protein-phosphatase
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLAELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLDRPTKPGKVKSFLKWF
>NZ_CP015817.1|WP_000244280.1|2743054_2743555_-|GNAT-family-N-acetyltransferase
MVLRKVIMQDLDQIIALENIVFSPEEAATREALKLRIEQIQETFIVAEKNDEVIGYINGPVIKERYISDDLFKNVSTNNSEGGYISVLGLVVAPNYQGQGIAGRLLNYFETLAKNHHRHGVTLTCRESLISFYEKYGYRNEGVSESCHGGIKWYNLVKNIKKDDEV
>NZ_CP015817.1|WP_000301927.1|2742575_2743052_-|peptide-methionine-(S)-S-oxide-reductase
MAVVYVAGGCLWGVEAFFATIPGIIHTEAGRANGRSSKLDGPYDGYAECVKLHIDDRMLTITDIMNYLFEIIDPYSVNRQGNDIGEKYRTGLYSCLDDHLIEARQFIERRKDRDQIAVEVLPLSNYIKSAEEHQQHLEKYPEDMHMCHISKDLLNKYK
>NZ_CP015817.1|WP_000842036.1|2751359_2753402_-|YSIRK-domain-containing-triacylglycerol-lipase-Lip1
MKSQNKYSIRKFSVGASSILIATLLFLSGGQAQAAEKQVNMGNSQEDTVTAQSIGDQQTRENANYQRENGVDEQQHTENLTKNLHNDKTISEENHRKTDDLNKDQLKDDKKSSLNNKNIQRDTTKNNNANPSDVNQGLEQAINDGKQSKVASQQQSKEADNSQDSNANNNLPSQSRIKEAPSLNKLDQTSQREIVNETEIEKVQPQQNNQANDKITNYNFNNEQEVKPQKDEKTLSVSDLKNNQKSPVEPTKDNDKKNGLNLLKSSAVATLPNKGTKELTAKAKDDQTNKVAKQGQYKNQDPIVLVHGFNGFTDDINPSVLAHYWGGNKMNIRQDLEENGYKAYEASISAFGSNYDRAVELYYYIKGGRVDYGAAHAAKYGHERYGKTYEGIYKDWKPGQKVHLVGHSMGGQTIRQLEELLRNGNREEIEYQKKHGGEISPLFKGNHDNMISSITTLGTPHNGTHASDLAGNEALVRQIVFDIGKMFGNKNSRVDFGLAQWGLKQKPNESYIDYVKRVKQSNLWKSKDNGFYDLTREGATDLNRKTSLNPNIVYKTYTGEATHKALNSDRQKADLNMFFPFVITGNLIGKATEKEWRENDGLVSVISSQHPFNQAYTKATDKIQKGIWQVTPTKHDWDHVDFVGQDSSDTVRTREELQDFWHHLADDLVKTEKLTDTKQA
>NZ_CP015817.1|WP_162489093.1|2754172_2754325_-|hypothetical-protein
MDNHNTKPKIIMKSELSNSGIDVTVKDVEKYMNRYNEVMKGKMAKKLKRI
>NZ_CP015817.1|WP_000170492.1|2754484_2755117_-|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE
MTKYKIDFSKGLVPAILQDNQTKQVLMLGYMNQEAFDKTIEDGVVCFYSRSKQRLWTKGETSGHTQRVKDIHVDCDNDTILIDVIPNGPTCHTGSQSCFNTEVPFSVQTLAQTVQDSAQSNNEKSYTKYLLTEGIEKITKKYGEEAFEVVIEAIKGDKKAFVSEVADELYHLFVLMHALGVDFSEIEAELARRHHKRNNFKGERQNIEQW
>NZ_CP015817.1|WP_000592600.1|2755113_2755872_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MIKKRIIPCLDVKDGRVVKGIQFKGLRDIGNPVDLAMYYNEAGADELVFLDISKTEEGHSLMLEVIEQTASRLFIPLTVGGGIQSLDDITQLLNHGADKVSLNSSALKNPQLIKQASDKFGRQCICIAIDSYYDPERKAHYCCTHGGKKMTNIKVYDWVQQVEQLGAGELLITSMGHDGMKQGFDIEHLANIKSLVNIPIIASGGGGNAQHFVELFDQTDVSAGLAASILHDRETTVQSIKEVIRQGGIAVR
>NZ_CP015817.1|WP_000571737.1|2755868_2756573_-|1-(5-phosphoribosyl)-5-((5--phosphoribosylamino)methylideneamino)imidazole-4--carboxamide-isomerase
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKVMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQASFWEGLK
>NZ_CP015817.1|WP_000635624.1|2756565_2757144_-|imidazole-glycerol-phosphate-synthase-subunit-HisH
MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKRLNLNAILAKNTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVSKHPMLNQDVYFVHSYQAPMSENVIAYAQYGTDIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQGGFIND
>NZ_CP015817.1|WP_000640266.1|2757140_2757719_-|imidazoleglycerol-phosphate-dehydratase-HisB
MIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
>NZ_CP015817.1|WP_000639186.1|2757687_2758701_-|histidinol-phosphate-aminotransferase-family-protein
MIYIDKNESPVTPLDEKTMTSIISATPYNLYPDAAYEQFKEAYAKFYGLSPEQIIAGNGSDELIQKLMLIMPEGPALTLNPDFFMYQAYAAQVNREIAFVDAGSDLTFDLETILTKIDEVQPSFFIMSNPHNPSGKQFDTAFLTAIADKMKALNGYFVIDEAYLDYGTAYDVELAPHILRMRTLSKAFGIAGLRLGVLISTAGTIKHIQKIEHPYPLNVFTLNIATYIFRHREETRVFLTMQRQLAEQLKQIFDTHVADKMSVFPSNANFVLTKGSAAQQLGQYVYEQGFKPRFYGEPVMKGYVRYSIATASQLKQLEEIVKEWSAKYDLSKTTKHS
>NZ_CP015817.1|WP_000930650.1|2758716_2759967_-|histidinol-dehydrogenase
MLNAQQFLNQFSLEAPLDESLYPIIRDICQEVKVHGDKALKMYNLTFDHTKTDHLEISHEQIKAAFDTLDEKTKQALQQSYERIKAYQESIKQTNQQLEESVECYEIYHPLESVGIYVPGGKASYPSTVLMTATLAQVAGVENIVVVTPPQPNGVSQEVLAACYITQVNQVFQVGGAQSIAALTYGTETIPKVDKIVGPGNQFVAYAKKYLFGQVGIDQIAGPTEIALIIDDTADLDAIVYDVFAQAEHDELARTYVISEDAQVLKDLESRIAKALPNVDRYDIVSKSIANQHYLIHASNFDEACHVMNTIAPEHASIQTVNPQPYIEKVKYVGALFIGHYSPEVIGDYVAGPSHVLPTNRTARFTNGLSVNDFLTRNTVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILIRQS
>NZ_CP015817.1|WP_000944142.1|2759959_2760574_-|ATP-phosphoribosyltransferase
MLRIAIAKGRLMDSLINYLDEIEYTKLSETLKNRERQLLLSVDNIECILVKGSDVPIYVEQGMADIGIVGSDILDERQYNVNNLLNMPFGACHFAVAAKPETTNYRKIATSYVHTAETYFKSKGIDVELIKLNGSVELACVVDMVDGIVDIVQTGTTLKANGLVEKQHISDINARLITNKAAYFKKSQLIEQFIRSLEVSIANA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP015817.1	1775618-1775647	0	1.0
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP015817.1	1775730-1775759	0	1.0
NZ_CP015817_1	1.1\|166209\|36\|NZ_CP015817\|CRISPRCasFinder	166209-166244	36	NZ_CP015817.1	976462-976497	1	0.972
NZ_CP015817_1	1.1\|166209\|36\|NZ_CP015817\|CRISPRCasFinder	166209-166244	36	NZ_CP015817.1	1850323-1850358	1	0.972
NZ_CP015817_5	5.2\|1779701\|30\|NZ_CP015817\|CRISPRCasFinder	1779701-1779730	30	NZ_CP015817.1	1779813-1779842	1	0.967
NZ_CP015817_10	10.1\|2322434\|27\|NZ_CP015817\|CRT	2322434-2322460	27	NZ_CP015817.1	2322378-2322404	1	0.963
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP015817.1	1117960-1117989	1	0.967
NZ_CP015817_10	10.3\|2322549\|27\|NZ_CP015817\|CRT	2322549-2322575	27	NZ_CP015817.1	834526-834552	1	0.963
NZ_CP015817_11	11.2\|2751157\|31\|NZ_CP015817\|CRISPRCasFinder	2751157-2751187	31	NZ_CP015817.1	284474-284504	1	0.968
NZ_CP015817_11	11.2\|2751157\|31\|NZ_CP015817\|CRISPRCasFinder	2751157-2751187	31	NZ_CP015817.1	834582-834612	1	0.968
NZ_CP015817_4	4.1\|1689843\|26\|NZ_CP015817\|CRISPRCasFinder	1689843-1689868	26	NZ_CP015817.1	790250-790275	2	0.923
NZ_CP015817_4	4.1\|1689843\|26\|NZ_CP015817\|CRISPRCasFinder	1689843-1689868	26	NZ_CP015817.1	790306-790331	2	0.923
NZ_CP015817_4	4.1\|1689843\|26\|NZ_CP015817\|CRISPRCasFinder	1689843-1689868	26	NZ_CP015817.1	790362-790387	2	0.923
NZ_CP015817_4	4.1\|1689843\|26\|NZ_CP015817\|CRISPRCasFinder	1689843-1689868	26	NZ_CP015817.1	834546-834571	2	0.923
NZ_CP015817_4	4.1\|1689843\|26\|NZ_CP015817\|CRISPRCasFinder	1689843-1689868	26	NZ_CP015817.1	1993450-1993475	2	0.923
NZ_CP015817_5	5.1\|1779645\|29\|NZ_CP015817\|CRISPRCasFinder	1779645-1779673	29	NZ_CP015817.1	834582-834610	2	0.931
NZ_CP015817_5	5.1\|1779645\|29\|NZ_CP015817\|CRISPRCasFinder	1779645-1779673	29	NZ_CP015817.1	1564367-1564395	2	0.931
NZ_CP015817_5	5.1\|1779645\|29\|NZ_CP015817\|CRISPRCasFinder	1779645-1779673	29	NZ_CP015817.1	1689879-1689907	2	0.931
NZ_CP015817_5	5.1\|1779645\|29\|NZ_CP015817\|CRISPRCasFinder	1779645-1779673	29	NZ_CP015817.1	1775677-1775705	2	0.931
NZ_CP015817_5	5.1\|1779645\|29\|NZ_CP015817\|CRISPRCasFinder	1779645-1779673	29	NZ_CP015817.1	1876731-1876759	2	0.931
NZ_CP015817_5	5.1\|1779645\|29\|NZ_CP015817\|CRISPRCasFinder	1779645-1779673	29	NZ_CP015817.1	2356806-2356834	2	0.931
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	NZ_CP015817.1	976481-976509	2	0.931
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	NZ_CP015817.1	1779814-1779842	2	0.931
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	NZ_CP015817.1	2088395-2088423	2	0.931
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP015817.1	166172-166201	2	0.933
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP015817.1	967133-967162	2	0.933
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP015817.1	1297273-1297302	2	0.933
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP015817.1	1972721-1972750	2	0.933
NZ_CP015817_10	10.3\|2322549\|27\|NZ_CP015817\|CRT	2322549-2322575	27	NZ_CP015817.1	834582-834608	2	0.926
NZ_CP015817_10	10.3\|2322549\|27\|NZ_CP015817\|CRT	2322549-2322575	27	NZ_CP015817.1	1564367-1564393	2	0.926
NZ_CP015817_10	10.3\|2322549\|27\|NZ_CP015817\|CRT	2322549-2322575	27	NZ_CP015817.1	1689879-1689905	2	0.926
NZ_CP015817_10	10.3\|2322549\|27\|NZ_CP015817\|CRT	2322549-2322575	27	NZ_CP015817.1	1775677-1775703	2	0.926
NZ_CP015817_10	10.3\|2322549\|27\|NZ_CP015817\|CRT	2322549-2322575	27	NZ_CP015817.1	1876733-1876759	2	0.926
NZ_CP015817_10	10.3\|2322549\|27\|NZ_CP015817\|CRT	2322549-2322575	27	NZ_CP015817.1	1993430-1993456	2	0.926
NZ_CP015817_10	10.3\|2322549\|27\|NZ_CP015817\|CRT	2322549-2322575	27	NZ_CP015817.1	2356808-2356834	2	0.926
NZ_CP015817_11	11.1\|2751102\|30\|NZ_CP015817\|CRISPRCasFinder	2751102-2751131	30	NZ_CP015817.1	780844-780873	2	0.933
NZ_CP015817_11	11.1\|2751102\|30\|NZ_CP015817\|CRISPRCasFinder	2751102-2751131	30	NZ_CP015817.1	827377-827406	2	0.933
NZ_CP015817_11	11.1\|2751102\|30\|NZ_CP015817\|CRISPRCasFinder	2751102-2751131	30	NZ_CP015817.1	870548-870577	2	0.933
NZ_CP015817_11	11.1\|2751102\|30\|NZ_CP015817\|CRISPRCasFinder	2751102-2751131	30	NZ_CP015817.1	976421-976450	2	0.933
NZ_CP015817_11	11.1\|2751102\|30\|NZ_CP015817\|CRISPRCasFinder	2751102-2751131	30	NZ_CP015817.1	1476042-1476071	2	0.933
NZ_CP015817_11	11.1\|2751102\|30\|NZ_CP015817\|CRISPRCasFinder	2751102-2751131	30	NZ_CP015817.1	1850341-1850370	2	0.933
NZ_CP015817_11	11.1\|2751102\|30\|NZ_CP015817\|CRISPRCasFinder	2751102-2751131	30	NZ_CP015817.1	2164427-2164456	2	0.933
NZ_CP015817_11	11.1\|2751102\|30\|NZ_CP015817\|CRISPRCasFinder	2751102-2751131	30	NZ_CP015817.1	2356861-2356890	2	0.933
NZ_CP015817_11	11.1\|2751102\|30\|NZ_CP015817\|CRISPRCasFinder	2751102-2751131	30	NZ_CP015817.1	2751213-2751242	2	0.933
NZ_CP015817_11	11.2\|2751157\|31\|NZ_CP015817\|CRISPRCasFinder	2751157-2751187	31	NZ_CP015817.1	834526-834556	2	0.935
NZ_CP015817_11	11.2\|2751157\|31\|NZ_CP015817\|CRISPRCasFinder	2751157-2751187	31	NZ_CP015817.1	1282738-1282768	2	0.935
NZ_CP015817_11	11.2\|2751157\|31\|NZ_CP015817\|CRISPRCasFinder	2751157-2751187	31	NZ_CP015817.1	1993430-1993460	2	0.935

1. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to position: 1775618-1775647, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tgcattgtctgtagaatttctttttgaaat	Protospacer
******************************

2. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to position: 1775730-1775759, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tgcattgtctgtagaatttctttttgaaat	Protospacer
******************************

3. spacer 1.1|166209|36|NZ_CP015817|CRISPRCasFinder matches to position: 976462-976497, mismatch: 1, identity: 0.972

gtgtgggccccaacaaagaggaattggattcccaat	CRISPR spacer
gtgtgggccccaacaaagagaaattggattcccaat	Protospacer
********************.***************

4. spacer 1.1|166209|36|NZ_CP015817|CRISPRCasFinder matches to position: 1850323-1850358, mismatch: 1, identity: 0.972

gtgtgggccccaacaaagaggaattggattcccaat	CRISPR spacer
gtgtgggccccaacaaagagaaattggattcccaat	Protospacer
********************.***************

5. spacer 5.2|1779701|30|NZ_CP015817|CRISPRCasFinder matches to position: 1779813-1779842, mismatch: 1, identity: 0.967

attgtttgttggaattggtgatcctatttc	CRISPR spacer
attgtctgttggaattggtgatcctatttc	Protospacer
*****.************************

6. spacer 10.1|2322434|27|NZ_CP015817|CRT matches to position: 2322378-2322404, mismatch: 1, identity: 0.963

cattattgtatgctgacttttcgtcac	CRISPR spacer
cattattgtaagctgacttttcgtcac	Protospacer
********** ****************

7. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to position: 1117960-1117989, mismatch: 1, identity: 0.967

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaat	Protospacer
************************.*****

8. spacer 10.3|2322549|27|NZ_CP015817|CRT matches to position: 834526-834552, mismatch: 1, identity: 0.963

cattattgtaagctgactttctgtcag	CRISPR spacer
cattattgtaagctgactttccgtcag	Protospacer
*********************.*****

9. spacer 11.2|2751157|31|NZ_CP015817|CRISPRCasFinder matches to position: 284474-284504, mismatch: 1, identity: 0.968

cattattgtaggctgactttccgccagcttc	CRISPR spacer
cattattgtatgctgactttccgccagcttc	Protospacer
********** ********************

10. spacer 11.2|2751157|31|NZ_CP015817|CRISPRCasFinder matches to position: 834582-834612, mismatch: 1, identity: 0.968

cattattgtaggctgactttccgccagcttc	CRISPR spacer
cattattgtaagctgactttccgccagcttc	Protospacer
**********.********************

11. spacer 4.1|1689843|26|NZ_CP015817|CRISPRCasFinder matches to position: 790250-790275, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ******.*************

12. spacer 4.1|1689843|26|NZ_CP015817|CRISPRCasFinder matches to position: 790306-790331, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtctgcttctatgttggggccccg	Protospacer
***.* ********************

13. spacer 4.1|1689843|26|NZ_CP015817|CRISPRCasFinder matches to position: 790362-790387, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgcttttatgttggggccccg	Protospacer
***** ****.***************

14. spacer 4.1|1689843|26|NZ_CP015817|CRISPRCasFinder matches to position: 834546-834571, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctgtgttggggccccg	Protospacer
***.********.*************

15. spacer 4.1|1689843|26|NZ_CP015817|CRISPRCasFinder matches to position: 1993450-1993475, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcctctgtgttggggccccg	Protospacer
********.***.*************

16. spacer 5.1|1779645|29|NZ_CP015817|CRISPRCasFinder matches to position: 834582-834610, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgactttccgccagct	Protospacer
**** ***************.********

17. spacer 5.1|1779645|29|NZ_CP015817|CRISPRCasFinder matches to position: 1564367-1564395, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ******************.*****

18. spacer 5.1|1779645|29|NZ_CP015817|CRISPRCasFinder matches to position: 1689879-1689907, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ******************.*****

19. spacer 5.1|1779645|29|NZ_CP015817|CRISPRCasFinder matches to position: 1775677-1775705, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ******************.*****

20. spacer 5.1|1779645|29|NZ_CP015817|CRISPRCasFinder matches to position: 1876731-1876759, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ******************.*****

21. spacer 5.1|1779645|29|NZ_CP015817|CRISPRCasFinder matches to position: 2356806-2356834, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ******************.*****

22. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to position: 976481-976509, mismatch: 2, identity: 0.931

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
ttgtctgttgaaattgggaatccaatttc	Protospacer
***************** .**********

23. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to position: 1779814-1779842, mismatch: 2, identity: 0.931

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
ttgtctgttggaattggtgatcctatttc	Protospacer
**********.************ *****

24. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to position: 2088395-2088423, mismatch: 2, identity: 0.931

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
ttgtctgtagaaattggtgttccaatttc	Protospacer
******** ********** *********

25. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to position: 166172-166201, mismatch: 2, identity: 0.933

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaat	Protospacer
*******.****************.*****

26. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to position: 967133-967162, mismatch: 2, identity: 0.933

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaat	Protospacer
********************.***.*****

27. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to position: 1297273-1297302, mismatch: 2, identity: 0.933

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaat	Protospacer
*******.****************.*****

28. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to position: 1972721-1972750, mismatch: 2, identity: 0.933

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tgcattgcctgtagaatttcttttagaaat	Protospacer
*******.**************** *****

29. spacer 10.3|2322549|27|NZ_CP015817|CRT matches to position: 834582-834608, mismatch: 2, identity: 0.926

cattattgtaagctgactttctgtcag	CRISPR spacer
cattattgtaagctgactttccgccag	Protospacer
*********************.*.***

30. spacer 10.3|2322549|27|NZ_CP015817|CRT matches to position: 1564367-1564393, mismatch: 2, identity: 0.926

cattattgtaagctgactttctgtcag	CRISPR spacer
cattattgtaagctgacttttcgtcag	Protospacer
********************..*****

31. spacer 10.3|2322549|27|NZ_CP015817|CRT matches to position: 1689879-1689905, mismatch: 2, identity: 0.926

cattattgtaagctgactttctgtcag	CRISPR spacer
cattattgtaagctgacttttcgtcag	Protospacer
********************..*****

32. spacer 10.3|2322549|27|NZ_CP015817|CRT matches to position: 1775677-1775703, mismatch: 2, identity: 0.926

cattattgtaagctgactttctgtcag	CRISPR spacer
cattattgtaagctgacttttcgtcag	Protospacer
********************..*****

33. spacer 10.3|2322549|27|NZ_CP015817|CRT matches to position: 1876733-1876759, mismatch: 2, identity: 0.926

cattattgtaagctgactttctgtcag	CRISPR spacer
cattattgtaagctgacttttcgtcag	Protospacer
********************..*****

34. spacer 10.3|2322549|27|NZ_CP015817|CRT matches to position: 1993430-1993456, mismatch: 2, identity: 0.926

cattattgtaagctgactttctgtcag	CRISPR spacer
cattattgtaagctgactttccgccag	Protospacer
*********************.*.***

35. spacer 10.3|2322549|27|NZ_CP015817|CRT matches to position: 2356808-2356834, mismatch: 2, identity: 0.926

cattattgtaagctgactttctgtcag	CRISPR spacer
cattattgtaagctgacttttcgtcag	Protospacer
********************..*****

36. spacer 11.1|2751102|30|NZ_CP015817|CRISPRCasFinder matches to position: 780844-780873, mismatch: 2, identity: 0.933

ttgtctgtagaaactgggaattcaatttct	CRISPR spacer
ttgtctgtagaaattgggaatccaatttct	Protospacer
*************.*******.********

37. spacer 11.1|2751102|30|NZ_CP015817|CRISPRCasFinder matches to position: 827377-827406, mismatch: 2, identity: 0.933

ttgtctgtagaaactgggaattcaatttct	CRISPR spacer
ttgtctgtagaaattgggaatccaatttct	Protospacer
*************.*******.********

38. spacer 11.1|2751102|30|NZ_CP015817|CRISPRCasFinder matches to position: 870548-870577, mismatch: 2, identity: 0.933

ttgtctgtagaaactgggaattcaatttct	CRISPR spacer
ttgtctgtagaaattgggaatccaatttct	Protospacer
*************.*******.********

39. spacer 11.1|2751102|30|NZ_CP015817|CRISPRCasFinder matches to position: 976421-976450, mismatch: 2, identity: 0.933

ttgtctgtagaaactgggaattcaatttct	CRISPR spacer
ttgtctgtagaaattgggaatccaatttct	Protospacer
*************.*******.********

40. spacer 11.1|2751102|30|NZ_CP015817|CRISPRCasFinder matches to position: 1476042-1476071, mismatch: 2, identity: 0.933

ttgtctgtagaaactgggaattcaatttct	CRISPR spacer
ttgtctgtagaaattgggaatccaatttct	Protospacer
*************.*******.********

41. spacer 11.1|2751102|30|NZ_CP015817|CRISPRCasFinder matches to position: 1850341-1850370, mismatch: 2, identity: 0.933

ttgtctgtagaaactgggaattcaatttct	CRISPR spacer
ttgtctgtagaaattgggaatccaatttct	Protospacer
*************.*******.********

42. spacer 11.1|2751102|30|NZ_CP015817|CRISPRCasFinder matches to position: 2164427-2164456, mismatch: 2, identity: 0.933

ttgtctgtagaaactgggaattcaatttct	CRISPR spacer
ttgtctgtagaaattgggaatccaatttct	Protospacer
*************.*******.********

43. spacer 11.1|2751102|30|NZ_CP015817|CRISPRCasFinder matches to position: 2356861-2356890, mismatch: 2, identity: 0.933

ttgtctgtagaaactgggaattcaatttct	CRISPR spacer
ttgtctgtagaaattgggaatccaatttct	Protospacer
*************.*******.********

44. spacer 11.1|2751102|30|NZ_CP015817|CRISPRCasFinder matches to position: 2751213-2751242, mismatch: 2, identity: 0.933

ttgtctgtagaaactgggaattcaatttct	CRISPR spacer
ttgtctgtagaaattgggaatccaatttct	Protospacer
*************.*******.********

45. spacer 11.2|2751157|31|NZ_CP015817|CRISPRCasFinder matches to position: 834526-834556, mismatch: 2, identity: 0.935

cattattgtaggctgactttccgccagcttc	CRISPR spacer
cattattgtaagctgactttccgtcagcttc	Protospacer
**********.************.*******

46. spacer 11.2|2751157|31|NZ_CP015817|CRISPRCasFinder matches to position: 1282738-1282768, mismatch: 2, identity: 0.935

cattattgtaggctgactttccgccagcttc	CRISPR spacer
cattatcgtaagctgactttccgccagcttc	Protospacer
******.***.********************

47. spacer 11.2|2751157|31|NZ_CP015817|CRISPRCasFinder matches to position: 1993430-1993460, mismatch: 2, identity: 0.935

cattattgtaggctgactttccgccagcttc	CRISPR spacer
cattattgtaagctgactttccgccagcctc	Protospacer
**********.*****************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015817_5	5.2\|1779701\|30\|NZ_CP015817\|CRISPRCasFinder	1779701-1779730	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	268766-268795	6	0.8
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	MK295203	Escherichia phage vB_EcoM_005, complete genome	6677-6705	6	0.793
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	MH051917	Enterobacteria phage vB_EcoM_IME341, complete genome	39722-39750	6	0.793
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	MH051913	Enterobacteria phage vB_EcoM_IME281, complete genome	39122-39150	6	0.793
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	NC_014260	Enterobacteria phage IME08, complete genome	136116-136144	6	0.793
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	MT682711	Escherichia phage vB_EcoM_FB, complete genome	135628-135656	6	0.793
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	MK234886	Escherichia phage AnYang, complete genome	100567-100595	6	0.793
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	HM071924	Enterobacteria phage IME08, complete sequence	136116-136144	6	0.793
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP040462	Enterococcus sp. M190262 plasmid pM190262, complete sequence	41880-41909	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP034684	Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence	33236-33265	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	KM359505	Prochlorococcus phage P-TIM68, complete genome	102712-102741	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_KY940428	UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence	107756-107785	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	12746-12775	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NC_011655	Bacillus cereus AH187 plasmid pAH187_270, complete sequence	83379-83408	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NZ_CP029457	Bacillus cereus strain FORC087 plasmid pFORC087.3, complete sequence	55620-55649	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NC_010924	Bacillus cereus strain AH187 plasmid pCER270, complete sequence	139788-139817	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	97420-97449	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	CP045776	Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence	129103-129132	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	296472-296501	6	0.8
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NC_016792	Bacillus cereus NC7401 plasmid pNCcld, complete sequence	138657-138686	6	0.8
NZ_CP015817_5	5.2\|1779701\|30\|NZ_CP015817\|CRISPRCasFinder	1779701-1779730	30	MN856116	Myoviridae sp. isolate 525, complete genome	4992-5021	7	0.767
NZ_CP015817_5	5.3\|1779758\|29\|NZ_CP015817\|CRISPRCasFinder	1779758-1779786	29	MK552327	Pseudomonas phage Psa21, complete genome	89275-89303	7	0.759
NZ_CP015817_2	2.1\|977937\|33\|NZ_CP015817\|CRISPRCasFinder	977937-977969	33	MT150133	Enterobacteria phage vB_EcoM_IME540, complete genome	25909-25941	8	0.758
NZ_CP015817_2	2.1\|977937\|33\|NZ_CP015817\|CRISPRCasFinder	977937-977969	33	MK234886	Escherichia phage AnYang, complete genome	114958-114990	8	0.758
NZ_CP015817_2	2.1\|977937\|33\|NZ_CP015817\|CRISPRCasFinder	977937-977969	33	MF036691	Serratia phage CBH8, complete genome	7593-7625	8	0.758
NZ_CP015817_2	2.1\|977937\|33\|NZ_CP015817\|CRISPRCasFinder	977937-977969	33	MF036690	Serratia phage CHI14, complete genome	7593-7625	8	0.758
NZ_CP015817_2	2.1\|977937\|33\|NZ_CP015817\|CRISPRCasFinder	977937-977969	33	MF036692	Serratia phage X20, complete genome	7813-7845	8	0.758
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	NC_013085	Synechococcus phage S-RSM4, complete genome	71945-71974	8	0.733
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	FM207411	Synechococcus phage S-RSM4 complete genome	71945-71974	8	0.733
NZ_CP015817_3	3.1\|1117908\|33\|NZ_CP015817\|CRISPRCasFinder	1117908-1117940	33	MF459647	Erwinia phage vB_EamM_Joad, complete genome	84795-84827	9	0.727
NZ_CP015817_3	3.1\|1117908\|33\|NZ_CP015817\|CRISPRCasFinder	1117908-1117940	33	MF459646	Erwinia phage vB_EamM_RisingSun, complete genome	84869-84901	9	0.727
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	MW117966	Synechococcus phage S-H9-1, complete genome	132425-132454	9	0.7
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	HM452126	Aeromonas phage phiAS5, complete genome	16075-16104	9	0.7
NZ_CP015817_10	10.2\|2322490\|30\|NZ_CP015817\|CRT	2322490-2322519	30	JX238501	Bacillus phage phiAGATE, complete genome	76143-76172	10	0.667

1. spacer 5.2|1779701|30|NZ_CP015817|CRISPRCasFinder matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 6, identity: 0.8

-attgtttgttggaattggtgatcctatttc	CRISPR spacer
tactg-ttgttggaattggtggtccaattaa	Protospacer
 *.** ***************.*** ***

2. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to MK295203 (Escherichia phage vB_EcoM_005, complete genome) position: , mismatch: 6, identity: 0.793

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
cttccggttgaaattggtgatcgaattcc	Protospacer
.* .* **************** ****.*

3. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to MH051917 (Enterobacteria phage vB_EcoM_IME341, complete genome) position: , mismatch: 6, identity: 0.793

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
cttccggttgaaattggtgatcgaattcc	Protospacer
.* .* **************** ****.*

4. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to MH051913 (Enterobacteria phage vB_EcoM_IME281, complete genome) position: , mismatch: 6, identity: 0.793

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
cttccggttgaaattggtgatcgaattcc	Protospacer
.* .* **************** ****.*

5. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to NC_014260 (Enterobacteria phage IME08, complete genome) position: , mismatch: 6, identity: 0.793

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
cttccggttgaaattggtgatcgaattcc	Protospacer
.* .* **************** ****.*

6. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to MT682711 (Escherichia phage vB_EcoM_FB, complete genome) position: , mismatch: 6, identity: 0.793

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
cttccggttgaaattggtgatcgaattcc	Protospacer
.* .* **************** ****.*

7. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to MK234886 (Escherichia phage AnYang, complete genome) position: , mismatch: 6, identity: 0.793

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
cttccggttgaaattggtgatcgaattcc	Protospacer
.* .* **************** ****.*

8. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to HM071924 (Enterobacteria phage IME08, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtctgttgaaattggtgatccaatttc	CRISPR spacer
cttccggttgaaattggtgatcgaattcc	Protospacer
.* .* **************** ****.*

9. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NZ_CP040462 (Enterococcus sp. M190262 plasmid pM190262, complete sequence) position: , mismatch: 6, identity: 0.8

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tattttgtctgtaggatatctttttgaaaa	Protospacer
*.. **********.** ***********

10. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

11. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 6, identity: 0.8

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tcaatgatctgtataatttcttttggaaat	Protospacer
*  ** .****** ********** *****

12. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NZ_KY940428 (UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

13. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

14. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NC_011655 (Bacillus cereus AH187 plasmid pAH187_270, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

15. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NZ_CP029457 (Bacillus cereus strain FORC087 plasmid pFORC087.3, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

16. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NC_010924 (Bacillus cereus strain AH187 plasmid pCER270, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

17. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NC_011777 (Bacillus cereus AH820 plasmid pAH820_272, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

18. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to CP045776 (Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

19. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

20. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NC_016792 (Bacillus cereus NC7401 plasmid pNCcld, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
atgaggt-tctgtagtttttctttttgaaat	Protospacer
 ** . * *******  **************

21. spacer 5.2|1779701|30|NZ_CP015817|CRISPRCasFinder matches to MN856116 (Myoviridae sp. isolate 525, complete genome) position: , mismatch: 7, identity: 0.767

attgt-ttgttggaattggtgatcctatttc	CRISPR spacer
-tggcattgttggaattggttttcctattgt	Protospacer
 * *. **************  ******* .

22. spacer 5.3|1779758|29|NZ_CP015817|CRISPRCasFinder matches to MK552327 (Pseudomonas phage Psa21, complete genome) position: , mismatch: 7, identity: 0.759

ttgtctgttgaaattggtgatccaatttc----	CRISPR spacer
tggtctgttgaaattggtg----aacctcaagg	Protospacer
* *****************    **..**

23. spacer 2.1|977937|33|NZ_CP015817|CRISPRCasFinder matches to MT150133 (Enterobacteria phage vB_EcoM_IME540, complete genome) position: , mismatch: 8, identity: 0.758

tagagaatttcaaaaaagaaattctacaggcaa	CRISPR spacer
tagagaattttgaaaaagaaattctctttgtta	Protospacer
**********..************* .  *. *

24. spacer 2.1|977937|33|NZ_CP015817|CRISPRCasFinder matches to MK234886 (Escherichia phage AnYang, complete genome) position: , mismatch: 8, identity: 0.758

tagagaatttcaaaaaagaaattctacaggcaa	CRISPR spacer
tagagaattttgaaaaagaaattctctttgtta	Protospacer
**********..************* .  *. *

25. spacer 2.1|977937|33|NZ_CP015817|CRISPRCasFinder matches to MF036691 (Serratia phage CBH8, complete genome) position: , mismatch: 8, identity: 0.758

tagagaatttcaaaaaagaaattct---acaggcaa	CRISPR spacer
aagataatttcaaaaaagaaatcctttcacatc---	Protospacer
 *** *****************.**   ***

26. spacer 2.1|977937|33|NZ_CP015817|CRISPRCasFinder matches to MF036690 (Serratia phage CHI14, complete genome) position: , mismatch: 8, identity: 0.758

tagagaatttcaaaaaagaaattct---acaggcaa	CRISPR spacer
aagataatttcaaaaaagaaatcctttcacatc---	Protospacer
 *** *****************.**   ***

27. spacer 2.1|977937|33|NZ_CP015817|CRISPRCasFinder matches to MF036692 (Serratia phage X20, complete genome) position: , mismatch: 8, identity: 0.758

tagagaatttcaaaaaagaaattct---acaggcaa	CRISPR spacer
aagataatttcaaaaaagaaatcctttcacatc---	Protospacer
 *** *****************.**   ***

28. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 8, identity: 0.733

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tgagagaattgtagagtttctttttgaaat	Protospacer
** .  . .******.**************

29. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 8, identity: 0.733

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
tgagagaattgtagagtttctttttgaaat	Protospacer
** .  . .******.**************

30. spacer 3.1|1117908|33|NZ_CP015817|CRISPRCasFinder matches to MF459647 (Erwinia phage vB_EamM_Joad, complete genome) position: , mismatch: 9, identity: 0.727

cattattgaaagctgactattggccagcttcta	CRISPR spacer
gattattggaagctgattattggccggtgttcg	Protospacer
 *******.*******.********.*. *...

31. spacer 3.1|1117908|33|NZ_CP015817|CRISPRCasFinder matches to MF459646 (Erwinia phage vB_EamM_RisingSun, complete genome) position: , mismatch: 9, identity: 0.727

cattattgaaagctgactattggccagcttcta	CRISPR spacer
gattattggaagctgattattggccggtgttcg	Protospacer
 *******.*******.********.*. *...

32. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 9, identity: 0.7

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
taagagaattgtagagtttctttttgaaat	Protospacer
*. .  . .******.**************

33. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to HM452126 (Aeromonas phage phiAS5, complete genome) position: , mismatch: 9, identity: 0.7

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
aaatatgtctgtagaattgcttgttgaaga	Protospacer
 .   ************* *** *****.

34. spacer 10.2|2322490|30|NZ_CP015817|CRT matches to JX238501 (Bacillus phage phiAGATE, complete genome) position: , mismatch: 10, identity: 0.667

tgcattgtctgtagaatttctttttgaaat	CRISPR spacer
ccttttgtctgtataatttctttttcttca	Protospacer
. . ********* ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

759019 : 766840

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244415.1\|759019_760075_-	two-component system sensor histidine kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
WP_000149344.1\|760074_760761_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|760735_761209_-	DoxX family protein	NA	NA	NA	NA
WP_001093562.1\|761551_761992_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000604990.1\|762271_762856_-	hypothetical protein	NA	NA	NA	NA
WP_001062972.1\|762954_763668_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000941336.1\|763671_764091_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_000446724.1\|764092_764761_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000604515.1\|765111_765705_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.2e-38	43.5
WP_001217797.1\|765688_766840_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1

DBSCAN-SWA_2

778812 : 793464

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663024.1\|778812_779871_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
WP_000197271.1\|780165_780708_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429006.1\|781308_782226_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
WP_031835073.1\|782316_782418_+	hypothetical protein	NA	NA	NA	NA
WP_000193751.1\|782495_784001_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_000930014.1\|784341_784842_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_001068497.1\|784861_785728_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|786528_786927_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_000855505.1\|786889_788995_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000562498.1\|789112_790084_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000499195.1\|790597_790753_+	hypothetical protein	NA	NA	NA	NA
WP_000876318.1\|790791_791763_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_001245573.1\|791749_792706_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000616840.1\|792702_793464_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_3

878555 : 963663

109

Staphylococcus_phage(75.0%)

portal,integrase,holin,head,tail,tRNA,protease,capsid,terminase

attL 875308:875325|attR 969993:970010

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
875308:875325	attL	NA	NA	NA	NA
WP_001006454.1\|878555_879806_+	cysteine desulfurase	Q2XUY6	environmental_halophage	1.4e-110	44.5
WP_001010508.1\|879795_880260_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_001074405.1\|880410_881808_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_086353406.1\|881875_882925_-\|integrase	site-specific integrase	A1KWY3	Staphylococcus_virus	5.0e-202	99.4
WP_000337826.1\|883037_883217_+	hypothetical protein	A0EWN7	Staphylococcus_virus	8.3e-25	100.0
WP_000392186.1\|883196_884129_-	hypothetical protein	A0EWN8	Staphylococcus_virus	3.9e-174	100.0
WP_000661437.1\|884160_884886_-	PH domain-containing protein	A0A0F6N4L7	Staphylococcus_phage	9.9e-125	100.0
WP_000775187.1\|884913_885588_-	ImmA/IrrE family metallo-endopeptidase	A0A0F6N3H6	Staphylococcus_phage	4.9e-126	100.0
WP_001055143.1\|885604_885937_-	helix-turn-helix transcriptional regulator	R4IH08	Staphylococcus_phage	4.1e-57	100.0
WP_086353407.1\|886199_886394_+	helix-turn-helix transcriptional regulator	A0A0F6N3M9	Staphylococcus_phage	3.1e-25	98.4
WP_001002757.1\|886393_887161_+	phage antirepressor Ant	A0A0F6N3N8	Staphylococcus_phage	1.1e-142	100.0
WP_000187184.1\|887161_887386_+	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
WP_001094943.1\|887425_887875_+	hypothetical protein	A1KWZ2	Staphylococcus_virus	3.0e-79	100.0
WP_000977381.1\|887888_888110_+	hypothetical protein	A0A0F6N3I2	Staphylococcus_phage	1.5e-31	100.0
WP_000066011.1\|888102_888264_+	DUF1270 domain-containing protein	Q4ZAZ7	Staphylococcus_virus	2.5e-20	100.0
WP_000165363.1\|888356_888659_+	DUF2482 family protein	A0A0F6N3N3	Staphylococcus_phage	1.4e-48	100.0
WP_000291067.1\|888663_888924_+	DUF1108 family protein	A1KX65	Staphylococcus_virus	8.9e-44	100.0
WP_001004336.1\|888936_889473_+	host-nuclease inhibitor Gam family protein	A0A0F6N4M6	Staphylococcus_phage	1.4e-80	100.0
WP_000840496.1\|889473_890124_+	ERF family protein	A0A0F6N3I5	Staphylococcus_phage	1.1e-119	100.0
WP_086353408.1\|890120_890564_+	single-stranded DNA-binding protein	Q9B0G2	Staphylococcus_virus	4.1e-73	99.3
WP_086353409.1\|890575_891250_+	hypothetical protein	A1KX69	Staphylococcus_virus	3.6e-129	98.2
WP_039702431.1\|891242_891986_+	hypothetical protein	C8CGZ1	Staphylococcus_phage	1.0e-60	77.5
WP_031880733.1\|891995_892775_+	ATP-binding protein	W5RAN3	Staphylococcus_phage	2.7e-144	99.6
WP_000237153.1\|892768_892930_+	hypothetical protein	D2JGK6	Staphylococcus_phage	4.5e-22	100.0
WP_001123673.1\|892942_893164_+	DUF3269 family protein	A7TWN4	Staphylococcus_phage	1.3e-35	100.0
WP_000049784.1\|893174_893579_+	DUF1064 domain-containing protein	A7TWN5	Staphylococcus_phage	7.1e-72	100.0
WP_001187240.1\|893583_893769_+	DUF3113 family protein	W5R8N4	Staphylococcus_phage	3.2e-27	98.4
WP_000907416.1\|893769_894390_+	hypothetical protein	A0A0H3U4U9	Staphylococcus_phage	4.9e-80	95.1
WP_000111490.1\|894386_894644_+	DUF3310 domain-containing protein	A7TWG9	Staphylococcus_phage	4.4e-43	98.8
WP_000235327.1\|894646_894847_+	hypothetical protein	A1KX12	Staphylococcus_virus	5.3e-28	98.5
WP_072497105.1\|894855_895104_+	hypothetical protein	A0A1P8L6E3	Staphylococcus_phage	7.5e-40	97.5
WP_000694059.1\|895117_895522_+	hypothetical protein	A0A0H4IPW3	Staphylococcus_phage	2.1e-71	99.3
WP_015978314.1\|895521_895797_+	hypothetical protein	Q4ZBD3	Staphylococcus_virus	2.3e-45	100.0
WP_064266706.1\|895789_896038_+	DUF1024 family protein	B7T0H8	Staphylococcus_virus	5.9e-37	96.3
WP_031911468.1\|896030_896540_+	dUTP pyrophosphatase	A9CR88	Staphylococcus_phage	1.2e-89	99.4
WP_001282070.1\|896576_896822_+	hypothetical protein	A0A0H4ITX2	Staphylococcus_phage	2.0e-37	100.0
WP_000195795.1\|896818_897007_+	DUF1381 domain-containing protein	A0A2I6PEH2	Staphylococcus_phage	2.8e-23	93.4
WP_000039541.1\|896981_897182_+	hypothetical protein	A0A2I6PF22	Staphylococcus_phage	2.0e-27	98.5
WP_000237868.1\|897184_897334_+	transcriptional activator RinB	A0A2I6PDY4	Staphylococcus_phage	1.1e-17	98.0
WP_000265043.1\|897333_897534_+	DUF1514 family protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
WP_000590122.1\|897561_897978_+	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
WP_000988330.1\|898209_898509_+	HNH endonuclease	G4KNP8	Staphylococcus_phage	4.6e-52	100.0
WP_000402904.1\|898638_898983_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000625088.1\|898979_900641_+\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
WP_000025274.1\|900656_901844_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
WP_000642728.1\|901827_902565_+\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
WP_000154559.1\|902588_903734_+\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
WP_031807821.1\|903753_904038_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	6.8e-45	98.9
WP_000150936.1\|904027_904312_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000755150.1\|904295_904658_+\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
WP_000114225.1\|904654_905059_+	HK97 gp10 family phage protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
WP_000565498.1\|905055_905463_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000268740.1\|905463_906108_+\|tail	phage tail protein	G4KNQ7	Staphylococcus_phage	6.5e-120	100.0
WP_071621395.1\|906149_906374_+	Ig-like domain-containing protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
WP_001096355.1\|906423_906774_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_001549167.1\|906824_906962_+	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
WP_086353410.1\|907018_911563_+\|tail	phage tail tape measure protein	A0A075M036	Staphylococcus_phage	0.0e+00	97.8
WP_000567390.1\|911559_913044_+\|tail	phage tail family protein	A0A068A242	Staphylococcus_phage	1.5e-297	100.0
WP_000582178.1\|913059_916845_+	hypothetical protein	A0A1P8L6B8	Staphylococcus_phage	0.0e+00	99.8
WP_001153681.1\|916834_916987_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_001040261.1\|917033_917321_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
WP_000539688.1\|917378_917675_+	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
WP_011447039.1\|917824_918001_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_031866188.1\|918053_918161_-	hypothetical protein	NA	NA	NA	NA
WP_000611512.1\|918212_918467_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_000920038.1\|919424_919916_+	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
WP_000702263.1\|921412_921763_+	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
WP_001791826.1\|921815_922076_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000669791.1\|922386_922566_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	1.4e-24	98.3
WP_001566719.1\|923523_925272_+	MAP domain-containing protein	NA	NA	NA	NA
WP_001068523.1\|925896_927183_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000990056.1\|927382_927481_+	hypothetical protein	NA	NA	NA	NA
WP_000681968.1\|927723_927900_+	hypothetical protein	NA	NA	NA	NA
WP_000691587.1\|928158_928539_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000991304.1\|928535_929432_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000645736.1\|929432_930113_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000763045.1\|930109_930982_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_001221651.1\|930981_931722_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000182842.1\|931787_932351_-	thioredoxin family protein	NA	NA	NA	NA
WP_000966288.1\|932471_932996_+	membrane protein	NA	NA	NA	NA
WP_001033971.1\|933055_933613_+	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000713071.1\|933609_934452_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001188074.1\|934508_935549_-	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000267034.1\|935999_936173_+	hypothetical protein	NA	NA	NA	NA
WP_000205106.1\|936745_937147_-	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
WP_000181322.1\|937416_938445_+	lactonase family protein	NA	NA	NA	NA
WP_049311846.1\|938564_939944_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_072384913.1\|939994_940168_+	hypothetical protein	NA	NA	NA	NA
WP_001140871.1\|940360_941290_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_000149686.1\|941342_941903_-	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_000275709.1\|942274_943372_+	pectate lyase	U5PWM6	Bacillus_phage	4.3e-47	34.6
WP_000323161.1\|943576_945139_+	SLC13 family permease	NA	NA	NA	NA
WP_001802312.1\|945149_945257_-	hypothetical protein	NA	NA	NA	NA
WP_001177828.1\|945328_946123_-	prephenate dehydratase	NA	NA	NA	NA
WP_000897640.1\|946142_947219_-	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_000284433.1\|947402_948872_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
WP_000040866.1\|948864_949686_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
WP_000011542.1\|949956_950559_+	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000669864.1\|950539_950713_+	NETI motif-containing protein	NA	NA	NA	NA
WP_000434933.1\|951004_951331_-	staphostatin A	NA	NA	NA	NA
WP_000827764.1\|951361_952528_-\|protease	cysteine protease staphopain A	NA	NA	NA	NA
WP_000572878.1\|953388_954684_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
WP_001165363.1\|954792_955095_+	hypothetical protein	NA	NA	NA	NA
WP_000272070.1\|955266_955959_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_000992924.1\|955955_958148_+	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000774559.1\|958151_960155_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	3.4e-114	36.1
WP_000831695.1\|960167_961367_+	CamS family sex pheromone protein	NA	NA	NA	NA
WP_086353411.1\|961455_962994_-	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000170162.1\|963360_963663_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
969993:970010	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1053106 : 1060851

Staphylococcus_phage(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001092769.1\|1053106_1053685_-	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	5.8e-67	74.0
WP_001039430.1\|1054648_1055356_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	3.6e-127	97.4
WP_001039447.1\|1055480_1056203_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
WP_001038867.1\|1056260_1056980_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
WP_001038706.1\|1057100_1057820_+\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	5.1e-129	99.2
WP_031865257.1\|1057884_1058019_+	hypothetical protein	NA	NA	NA	NA
WP_001566696.1\|1058183_1059740_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.0e-288	99.6
WP_000072558.1\|1059732_1060851_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.6e-39	35.1

DBSCAN-SWA_5

1066084 : 1112934

Staphylococcus_phage(94.29%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000864138.1\|1066084_1066642_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	3.5e-77	96.2
WP_049311638.1\|1067512_1067854_-	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
WP_000669019.1\|1067894_1068521_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	2.9e-96	96.6
WP_000070647.1\|1068596_1069592_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	2.1e-69	94.0
WP_001789021.1\|1069672_1070323_-	excalibur calcium-binding domain-containing protein	A0A2H4PQM8	Staphylococcus_phage	5.2e-56	98.6
WP_072361838.1\|1070625_1071081_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	6.7e-79	98.6
WP_000348369.1\|1071239_1072718_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.6e-283	98.0
WP_000778537.1\|1072722_1073724_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.1e-188	98.8
WP_000718107.1\|1073720_1073978_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000672015.1\|1074043_1074517_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	5.5e-84	99.4
WP_072361841.1\|1074521_1075268_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.9e-143	99.6
WP_000109917.1\|1075520_1077113_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
WP_000933822.1\|1077484_1078678_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_000366170.1\|1078802_1079711_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.7e-137	99.3
WP_086353414.1\|1079922_1080756_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.6e-157	98.9
WP_000623470.1\|1082752_1083106_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
WP_001200542.1\|1083102_1083468_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000091441.1\|1083723_1084026_-	hypothetical protein	NA	NA	NA	NA
WP_001096494.1\|1084285_1084999_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_001168902.1\|1085438_1086074_-\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001030469.1\|1086369_1086813_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
WP_001153742.1\|1086799_1087243_-	competence protein ComK	NA	NA	NA	NA
WP_000671324.1\|1087355_1087826_-	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	6.7e-82	98.7
WP_000384171.1\|1088024_1088249_+	hypothetical protein	NA	NA	NA	NA
WP_001032833.1\|1088524_1089379_+	glucosaminidase domain-containing protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000989121.1\|1089465_1090758_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
WP_000221177.1\|1090757_1091072_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
WP_001261668.1\|1091594_1093097_+	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
WP_000077358.1\|1093577_1094621_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.3e-196	98.8
WP_000493878.1\|1094627_1095260_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.2e-112	99.0
WP_001159022.1\|1095270_1096452_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
WP_001008551.1\|1096464_1096929_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001196354.1\|1097050_1098052_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
WP_001790712.1\|1098163_1098283_+	hypothetical protein	NA	NA	NA	NA
WP_000266096.1\|1098285_1099113_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000757543.1\|1099684_1100086_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000764419.1\|1100205_1100769_-	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
WP_000526540.1\|1100765_1101719_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.4e-78	99.3
WP_001025061.1\|1101828_1103010_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
WP_001566684.1\|1103297_1105715_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
WP_000836463.1\|1105736_1106048_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	6.3e-52	99.0
WP_049311740.1\|1106373_1112934_+	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	4.2e-307	96.7

DBSCAN-SWA_6

1238952 : 1247995

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001005768.1\|1238952_1239957_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
WP_086353416.1\|1239958_1240984_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001112045.1\|1241006_1242146_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001160682.1\|1242164_1242425_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_000749795.1\|1242699_1244979_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_000594995.1\|1245181_1247455_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-62	28.8
WP_000364542.1\|1247476_1247995_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_7

1317426 : 1325738

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217247.1\|1317426_1319226_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-54	36.0
WP_001283055.1\|1319449_1320556_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_000624580.1\|1320686_1321364_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_000683933.1\|1321366_1322467_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
WP_001062177.1\|1322580_1323927_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
WP_000924214.1\|1323936_1324827_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001213908.1\|1324952_1325738_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_8

1866777 : 1875250

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000238670.1\|1866777_1867344_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	40.1
WP_000030811.1\|1867346_1868375_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
WP_000483712.1\|1868367_1869852_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.2e-45	31.5
WP_000032727.1\|1869830_1872020_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-140	39.7
WP_000666799.1\|1872012_1872684_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000848350.1\|1872685_1872949_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000174053.1\|1872948_1873653_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
WP_001010406.1\|1873656_1874781_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000861572.1\|1874767_1875250_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_9

2031012 : 2077686

Staphylococcus_phage(83.82%)

portal,integrase,holin,head,tail,capsid,terminase,plate

attL 2048692:2048708|attR 2080077:2080093

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000528632.1\|2031012_2031570_-	hypothetical protein	W5R8Q1	Staphylococcus_phage	5.7e-104	100.0
WP_070866175.1\|2032357_2032915_+	DUF4888 domain-containing protein	A0A0F6N4L1	Staphylococcus_phage	2.8e-95	99.5
WP_086353425.1\|2032974_2034387_-	N-acetylmuramoyl-L-alanine amidase	A0A0F6N3N1	Staphylococcus_phage	3.2e-284	99.4
WP_000351119.1\|2034373_2034649_-\|holin	phage holin	A0A0F6N3M0	Staphylococcus_phage	8.6e-45	100.0
WP_000398856.1\|2034704_2035100_-	hypothetical protein	B2ZZ04	Staphylococcus_phage	2.7e-68	99.2
WP_086353426.1\|2035105_2036278_-\|plate	BppU family phage baseplate upper protein	B2ZZ03	Staphylococcus_phage	2.4e-197	99.5
WP_000524038.1\|2036290_2038165_-	glucosaminidase domain-containing protein	A0A2H4JB48	uncultured_Caudovirales_phage	0.0e+00	99.4
WP_000466777.1\|2038301_2038601_-	DUF2951 domain-containing protein	A0A0F6N3M6	Staphylococcus_phage	9.9e-47	100.0
WP_001790193.1\|2038641_2038815_-	XkdX family protein	Q8LTH6	Staphylococcus_phage	1.7e-27	100.0
WP_000705914.1\|2038824_2039202_-	DUF2977 domain-containing protein	W5R9M2	Staphylococcus_phage	3.4e-60	99.2
WP_000259612.1\|2039201_2041025_-\|plate	BppU family phage baseplate upper protein	W5R8J5	Staphylococcus_phage	3.7e-293	99.0
WP_046594647.1\|2041024_2042923_-	hypothetical protein	A0A2H4JCV8	uncultured_Caudovirales_phage	0.0e+00	98.6
WP_046594648.1\|2042935_2044822_-\|tail	phage tail protein	W5RAP4	Staphylococcus_phage	0.0e+00	96.8
WP_046594649.1\|2044832_2045768_-\|tail	phage tail family protein	A0A0E3T9N1	Staphylococcus_phage	2.7e-175	96.8
WP_072532484.1\|2045782_2048752_-\|terminase	terminase	A0A2H4PQM1	Staphylococcus_phage	1.1e-265	99.2
2048692:2048708	attL	NA	NA	NA	NA
WP_000204079.1\|2048754_2049096_-	hypothetical protein	W5R8J4	Staphylococcus_phage	3.5e-56	100.0
WP_000141084.1\|2049116_2049611_-	hypothetical protein	A0A0H4IPX9	Staphylococcus_phage	2.5e-87	100.0
WP_000046067.1\|2049672_2050233_-	hypothetical protein	A0A0H4ITY2	Staphylococcus_phage	5.9e-101	100.0
WP_000270196.1\|2050219_2050657_-	DUF3168 domain-containing protein	A0A0E3T9M9	Staphylococcus_phage	2.1e-77	100.0
WP_046594651.1\|2050669_2051083_-	HK97 gp10 family phage protein	A0A0E3XCY8	Staphylococcus_phage	2.2e-76	98.5
WP_000482988.1\|2051069_2051405_-\|head	phage head closure protein	A0A0H4ISR6	Staphylococcus_phage	1.0e-60	100.0
WP_046594652.1\|2051397_2051712_-\|head,tail	phage head-tail connector protein	A0A2H4PQL2	Staphylococcus_phage	6.3e-52	97.1
WP_046594653.1\|2051711_2052038_-	Rho termination factor N-terminal domain-containing protein	Q9G000	Staphylococcus_virus	8.0e-50	97.2
WP_046594654.1\|2052054_2052879_-\|capsid	N4-gp56 family major capsid protein	A0A0H4J347	Staphylococcus_phage	3.6e-147	98.9
WP_046594655.1\|2052899_2053496_-	phage scaffolding protein	A0A0H4IP83	Staphylococcus_phage	7.3e-73	75.8
WP_086353427.1\|2053593_2054574_-\|capsid	minor capsid protein	A0A0E3XC69	Staphylococcus_phage	1.7e-180	98.5
WP_086353428.1\|2054512_2055991_-\|portal	phage portal protein	Q4ZB45	Staphylococcus_virus	9.6e-284	99.4
WP_001807202.1\|2055944_2057153_-\|terminase	PBSX family phage terminase large subunit	A0A0H4ITX6	Staphylococcus_phage	1.0e-235	100.0
WP_000594085.1\|2057145_2057640_-	hypothetical protein	A0A0H4J343	Staphylococcus_phage	8.4e-83	100.0
WP_000286968.1\|2057991_2058393_-	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
WP_000595256.1\|2058393_2058567_-	transcriptional activator RinB	A0A0H3U4U1	Staphylococcus_phage	9.8e-23	100.0
WP_024936909.1\|2058563_2058953_-	hypothetical protein	A7TWI1	Staphylococcus_phage	1.4e-64	99.2
WP_000608273.1\|2058942_2059179_-	hypothetical protein	S4SWB7	Staphylococcus_phage	1.6e-36	100.0
WP_001072795.1\|2059171_2059375_-	hypothetical protein	A0A0N9BAX5	Staphylococcus_phage	5.2e-31	100.0
WP_086353430.1\|2059371_2059578_-	DUF1381 domain-containing protein	A0A1W6JPM8	Staphylococcus_phage	6.0e-19	97.1
WP_001209216.1\|2059594_2059768_-	hypothetical protein	A0A1W6JQ45	Staphylococcus_phage	4.7e-25	100.0
WP_086353431.1\|2059804_2060338_-	dUTP pyrophosphatase	A0A059T5A7	Staphylococcus_phage	2.8e-92	97.2
WP_086353432.1\|2060330_2060573_-	hypothetical protein	A0A2I6PF40	Staphylococcus_phage	4.1e-35	97.5
WP_086353433.1\|2060562_2060799_-	DUF1024 family protein	A0A0H3U313	Staphylococcus_phage	1.5e-34	98.7
WP_001105611.1\|2060791_2061157_-	hypothetical protein	A7YGS3	Staphylococcus_virus	1.6e-59	95.0
WP_001622142.1\|2061171_2061420_-	hypothetical protein	A0A1W6JPX8	Staphylococcus_phage	2.1e-42	97.6
WP_001622141.1\|2061420_2061780_-	hypothetical protein	B2ZYW3	Staphylococcus_phage	3.2e-60	97.5
WP_020808085.1\|2061780_2061969_-	DUF3113 family protein	A0A0E3TAK3	Staphylococcus_phage	2.0e-24	96.7
WP_000049795.1\|2061973_2062378_-	DUF1064 domain-containing protein	A0A068A2B2	Staphylococcus_phage	9.6e-69	100.0
WP_001123695.1\|2062387_2062609_-	DUF3269 family protein	A0A0H3U2V4	Staphylococcus_phage	2.2e-35	100.0
WP_000256589.1\|2062621_2062780_-	hypothetical protein	A0A2H4PQI7	Staphylococcus_phage	4.5e-22	100.0
WP_017804692.1\|2062773_2063553_-	ATP-binding protein	A7YGR0	Staphylococcus_virus	1.4e-145	100.0
WP_000190224.1\|2063562_2064333_-	conserved phage C-terminal domain-containing protein	W5R8N2	Staphylococcus_phage	1.4e-116	100.0
WP_000371250.1\|2064397_2065255_+	DUF4393 domain-containing protein	Q4ZBL8	Staphylococcus_phage	9.5e-159	100.0
WP_015977703.1\|2065360_2066035_-	DUF968 domain-containing protein	Q4ZD97	Staphylococcus_virus	2.8e-129	100.0
WP_000934783.1\|2066048_2066477_-	single-stranded DNA-binding protein	A0A2H4JHI1	uncultured_Caudovirales_phage	1.2e-53	93.0
WP_001043071.1\|2066476_2067115_-	ERF family protein	A0A059T7J7	Staphylococcus_phage	8.2e-115	98.6
WP_000002516.1\|2067114_2067594_-	siphovirus Gp157 family protein	A0A0H4J328	Staphylococcus_phage	1.1e-82	100.0
WP_031807830.1\|2067608_2067869_-	DUF1108 family protein	A1KX65	Staphylococcus_virus	1.3e-42	96.5
WP_000066020.1\|2067960_2068122_-	DUF1270 domain-containing protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
WP_001120197.1\|2068118_2068439_-	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
WP_000275058.1\|2068497_2069130_+	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
WP_000939496.1\|2069144_2069285_-	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
WP_001148861.1\|2069315_2069513_-	hypothetical protein	A0A1W6JPV3	Staphylococcus_phage	1.2e-24	100.0
WP_000854068.1\|2069529_2069799_-	helix-turn-helix transcriptional regulator	H9A0Y0	Staphylococcus_phage	5.3e-39	94.4
WP_031768797.1\|2069933_2070647_+	helix-turn-helix transcriptional regulator	M9NUL0	Staphylococcus_phage	1.0e-129	99.2
WP_001049401.1\|2070658_2070805_+	hypothetical protein	U5U441	Staphylococcus_phage	4.3e-19	100.0
WP_000109193.1\|2070801_2070987_+	hypothetical protein	Q9G041	Staphylococcus_virus	4.3e-24	96.7
WP_031901045.1\|2071042_2071627_+	hypothetical protein	Q4ZCY3	Staphylococcus_virus	8.4e-66	97.4
WP_000694772.1\|2071856_2072039_+	hypothetical protein	A0A2I6PDF8	Staphylococcus_phage	6.9e-27	100.0
WP_031901044.1\|2072137_2073121_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_031901043.1\|2073131_2073374_+	hypothetical protein	NA	NA	NA	NA
WP_000857185.1\|2073436_2074474_+\|integrase	site-specific integrase	Q38086	Staphylococcus_phage	4.5e-179	100.0
WP_000595393.1\|2075592_2076609_-	bi-component leukocidin LukGH subunit G	A0A1X9IGW5	Staphylococcus_phage	3.0e-26	30.6
WP_000791418.1\|2076630_2077686_-	bi-component leukocidin LukGH subunit H	A0A2I6PDF3	Staphylococcus_phage	1.8e-34	31.8
2080077:2080093	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP015818

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9199 : 19439

Streptococcus_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002292226.1\|9199_9937_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	1.4e-134	99.6
WP_001814874.1\|10059_10143_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA
WP_001015311.1\|12302_12983_-\|transposase	IS6-like element IS1216 family transposase	A0A1X9I6C6	Streptococcus_phage	1.5e-127	99.6
WP_086353444.1\|13131_13338_+	hypothetical protein	NA	NA	NA	NA
WP_012655887.1\|13359_13665_+	hypothetical protein	NA	NA	NA	NA
WP_012655888.1\|13692_14304_-	recombinase family protein	A0A219YA40	Aeromonas_phage	1.8e-18	36.6
WP_012655889.1\|14630_15206_+	recombinase family protein	M9Q1K0	Clostridium_phage	1.2e-16	30.8
WP_025906304.1\|15289_15781_+	dihydrofolate reductase	A0A076GDN3	Bacillus_phage	2.9e-27	40.9
WP_012655891.1\|15777_16485_+	FAD-dependent thymidylate synthase	M1IEJ2	Bacillus_phage	8.0e-79	60.6
WP_000164958.1\|16590_17406_+	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	4.0e-05	29.8
WP_172839227.1\|17525_17741_-	hypothetical protein	NA	NA	NA	NA
WP_046472839.1\|18061_18628_-	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_001791613.1\|18839_18932_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_000119691.1\|19091_19439_-	helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	6.4e-13	36.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015817

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP015818

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection