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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021176 Escherichia coli strain 5CRE51 plasmid p5CRE51-MCR-1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP021175 Escherichia coli strain 5CRE51 chromosome, complete genome 8 crisprs DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,PrimPol 0 10 9 0
NZ_CP021177 Escherichia coli strain 5CRE51 plasmid p5CRE51-NDM-9 sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP021175
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021175_1 98449-98545 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021175_2 238590-238734 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021175_3 868623-868772 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021175_4 2529364-2530002 Orphan I-E
10 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021175_5 2557053-2557627 TypeI-E I-E
9 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021175_6 3823959-3824082 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021175_7 4536383-4536474 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021175_8 4889816-4889960 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021175_7 7.1|4536409|40|NZ_CP021175|CRISPRCasFinder 4536409-4536448 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP021175_4 4.9|2529881|32|NZ_CP021175|CRISPRCasFinder,CRT 2529881-2529912 32 KT898133 Aeromonas phage phiARM81ld, complete genome 45655-45686 2 0.938
NZ_CP021175_5 5.4|2557262|35|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT 2557262-2557296 35 NZ_CP037443 Klebsiella sp. PO552 plasmid p2, complete sequence 42676-42710 2 0.943
NZ_CP021175_6 6.1|3824002|38|NZ_CP021175|CRISPRCasFinder 3824002-3824039 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP021175_4 4.3|2529515|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT 2529515-2529546 32 NC_016040 Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence 37866-37897 6 0.812
NZ_CP021175_4 4.5|2529637|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT 2529637-2529668 32 KC821619 Cellulophaga phage phi18:1, complete genome 6924-6955 7 0.781
NZ_CP021175_4 4.5|2529637|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT 2529637-2529668 32 KC821627 Cellulophaga phage phi18:2, complete genome 6924-6955 7 0.781
NZ_CP021175_4 4.1|2529393|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT 2529393-2529424 32 NZ_CP045381 Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence 107507-107538 8 0.75
NZ_CP021175_4 4.1|2529393|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT 2529393-2529424 32 NZ_CP019631 Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence 199281-199312 8 0.75
NZ_CP021175_4 4.4|2529576|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT 2529576-2529607 32 MN855878 Bacteriophage sp. isolate 336, complete genome 5171-5202 8 0.75
NZ_CP021175_4 4.9|2529881|32|NZ_CP021175|CRISPRCasFinder,CRT 2529881-2529912 32 MN901520 Halorubrum coriense virus Hardycor2, complete genome 16524-16555 8 0.75
NZ_CP021175_4 4.5|2529637|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT 2529637-2529668 32 NZ_CP020483 Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence 383-414 9 0.719
NZ_CP021175_2 2.1|238633|59|NZ_CP021175|CRISPRCasFinder 238633-238691 59 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 97-155 10 0.831
NZ_CP021175_2 2.1|238633|59|NZ_CP021175|CRISPRCasFinder 238633-238691 59 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 40375-40433 11 0.814
NZ_CP021175_5 5.5|2557323|35|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT 2557323-2557357 35 NZ_CP038863 Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence 20152-20186 12 0.657

1. spacer 7.1|4536409|40|NZ_CP021175|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 4.9|2529881|32|NZ_CP021175|CRISPRCasFinder,CRT matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 2, identity: 0.938

gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
gacgacgagacgccctggtgcgccgcgttcgt	Protospacer
*****.**************.***********

3. spacer 5.4|2557262|35|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.943

tcggcgagtaagagtactgagtattttaatctcat	CRISPR spacer
acggcgagtaagagtgctgagtattttaatctcat	Protospacer
 **************.*******************

4. spacer 6.1|3824002|38|NZ_CP021175|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 4.3|2529515|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.812

tgcacgccctgccggaatctcccctcgctctc	CRISPR spacer
tgcacgccctgccggaagatcccctcacgatt	Protospacer
*****************  *******.*  *.

6. spacer 4.5|2529637|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT matches to KC821619 (Cellulophaga phage phi18:1, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

7. spacer 4.5|2529637|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT matches to KC821627 (Cellulophaga phage phi18:2, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

8. spacer 4.1|2529393|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

9. spacer 4.1|2529393|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

10. spacer 4.4|2529576|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

agtaagccggttgattatcgcca----gggatatta	CRISPR spacer
agtaagcaggatgattatcgccaccatggcgt----	Protospacer
******* ** ************    ** .*    

11. spacer 4.9|2529881|32|NZ_CP021175|CRISPRCasFinder,CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 8, identity: 0.75

--gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
ccgccgcc--gacgctcgggtgtgccgcgttcgg	Protospacer
  * ** .  *****.* *************** 

12. spacer 4.5|2529637|32|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020483 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence) position: , mismatch: 9, identity: 0.719

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
acttttattgttttgagtgaaaataaaggcta	Protospacer
* .*********** ** ******** *    

13. spacer 2.1|238633|59|NZ_CP021175|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

-cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc	CRISPR spacer
tcagtgcac-gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctc	Protospacer
 *.* ****  **.**************************** ************   .*

14. spacer 2.1|238633|59|NZ_CP021175|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc-	CRISPR spacer
ggtacggctttttgccggatgcggcgtaaacgccttatccggcctacggtt-tggtgcga	Protospacer
 * *  .*** ****************.*********************** ***..*  

15. spacer 5.5|2557323|35|NZ_CP021175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.657

tcggccatagactttattaacttcattgggggtta	CRISPR spacer
atcgccatagaattttttaacttcattgcctaaag	Protospacer
 . ******** *** ************   .  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 397632 : 458640 72 Escherichia_phage(41.18%) lysis,tail,head,portal,terminase,integrase,capsid,transposase attL 399003:399050|attR 444105:444152
DBSCAN-SWA_2 466898 : 539740 59 uncultured_Caudovirales_phage(20.0%) plate,tRNA,transposase,protease NA
DBSCAN-SWA_3 2229629 : 2236362 11 Escherichia_phage(44.44%) NA NA
DBSCAN-SWA_4 2573985 : 2581125 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_5 2956907 : 3004399 66 Salmonella_phage(33.33%) holin,terminase,tail,head,lysis,integrase attL 2949147:2949169|attR 3003317:3003339
DBSCAN-SWA_6 3270548 : 3333316 69 Escherichia_phage(24.39%) plate,lysis,protease,terminase,tail,head,portal,tRNA,integrase,capsid,transposase attL 3297790:3297811|attR 3331784:3331805
DBSCAN-SWA_7 4317939 : 4324377 9 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_8 4327607 : 4421485 111 Escherichia_phage(31.03%) holin,protease,tail,head,tRNA,portal,terminase,integrase,capsid,transposase attL 4372321:4372335|attR 4421587:4421601
DBSCAN-SWA_9 4741622 : 4772834 24 Enterobacteria_phage(20.0%) protease,integrase,transposase attL 4736115:4736129|attR 4778125:4778139
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP021177
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 24240 : 97543 78 Escherichia_phage(28.0%) transposase,integrase attL 35731:35746|attR 97547:98367
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage