CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP021210	Escherichia coli strain strain Z247 plasmid p2474-NDM1, complete sequence	0 crisprs	RT	0	0
NZ_CP021209	Escherichia coli strain strain Z247 plasmid p2474-MCR1, complete sequence	0 crisprs	NA	0	1
NZ_CP021207	Escherichia coli strain strain Z247 chromosome, complete genome	3 crisprs	RT,cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL	3	9
NZ_CP021208	Escherichia coli strain strain Z247 plasmid p2474-3, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

48841 : 102426

Salmonella_phage(41.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087522250.1\|48841_50210_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	6.3e-112	99.5
WP_000783758.1\|50309_50468_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001015182.1\|50886_51090_-	hypothetical protein	NA	NA	NA	NA
WP_000743060.1\|51135_51486_-	hypothetical protein	NA	NA	NA	NA
WP_001031421.1\|51545_52145_-	hypothetical protein	A0A1V0E5L6	Salmonella_phage	1.7e-08	42.6
WP_000778030.1\|52244_53189_-	DUF5417 domain-containing protein	NA	NA	NA	NA
WP_001371930.1\|53698_53875_+	hypothetical protein	NA	NA	NA	NA
WP_001272970.1\|54290_55475_+	hypothetical protein	NA	NA	NA	NA
WP_000710431.1\|55540_55822_+	hypothetical protein	NA	NA	NA	NA
WP_000893963.1\|56078_56285_+	hypothetical protein	NA	NA	NA	NA
WP_000744346.1\|56405_56702_+	hypothetical protein	NA	NA	NA	NA
WP_000286107.1\|56746_57184_+	hypothetical protein	NA	NA	NA	NA
WP_000800252.1\|57251_57788_+	hypothetical protein	NA	NA	NA	NA
WP_000537761.1\|57952_58321_+	hypothetical protein	NA	NA	NA	NA
WP_071447784.1\|58753_59056_+	hypothetical protein	NA	NA	NA	NA
WP_001032029.1\|59412_59697_+	hypothetical protein	NA	NA	NA	NA
WP_000210769.1\|59762_60116_+	hypothetical protein	NA	NA	NA	NA
WP_000338612.1\|60402_61134_-	NERD domain-containing protein	NA	NA	NA	NA
WP_000952983.1\|61135_62317_-	S49 family peptidase	B8QTU8	Erwinia_phage	3.4e-13	29.2
WP_000718549.1\|62327_62990_-	DUF4400 domain-containing protein	NA	NA	NA	NA
WP_046788496.1\|62976_64086_-	hypothetical protein	NA	NA	NA	NA
WP_046788497.1\|64085_66170_-	conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_001011151.1\|66169_69316_-	TraI domain-containing protein	NA	NA	NA	NA
WP_086353230.1\|69325_70063_-	hypothetical protein	NA	NA	NA	NA
WP_000071885.1\|70059_70545_-	hypothetical protein	NA	NA	NA	NA
WP_000004209.1\|71303_72104_+	hypothetical protein	NA	NA	NA	NA
WP_001140953.1\|72105_72618_+	hypothetical protein	NA	NA	NA	NA
WP_000196728.1\|73211_74258_+	thioredoxin family protein	NA	NA	NA	NA
WP_001257292.1\|74247_75663_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_046788498.1\|75671_79625_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_001284752.1\|79805_81095_+	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	5.5e-09	32.9
WP_015059500.1\|81202_81721_-	hypothetical protein	NA	NA	NA	NA
WP_000494967.1\|81851_82391_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000720274.1\|82538_83288_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_000843244.1\|83312_83705_+	hypothetical protein	NA	NA	NA	NA
WP_000025803.1\|83738_84161_+	hypothetical protein	NA	NA	NA	NA
WP_000620990.1\|84220_84832_-	hypothetical protein	NA	NA	NA	NA
WP_000031377.1\|84938_85748_+	DsbA family protein	NA	NA	NA	NA
WP_042634445.1\|85793_87053_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.6e-96	44.3
WP_000111290.1\|87036_87471_-	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	2.5e-22	48.8
WP_001130842.1\|87664_88282_+	hypothetical protein	NA	NA	NA	NA
WP_000770127.1\|88431_88788_+	hypothetical protein	NA	NA	NA	NA
WP_152919720.1\|89038_89209_+	hypothetical protein	NA	NA	NA	NA
WP_086353231.1\|89245_89950_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.4e-138	99.1
WP_044728194.1\|90023_90521_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	3.6e-49	86.2
WP_001138064.1\|90523_93490_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_046788546.1\|93498_93900_+	hypothetical protein	NA	NA	NA	NA
WP_001067784.1\|93984_94689_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
WP_001447541.1\|95613_96498_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_063122217.1\|96714_97929_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.5e-16	25.4
WP_001255015.1\|97956_98262_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015344975.1\|98373_99867_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1\|99897_100149_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|100042_100345_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|100431_101247_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_085940648.1\|101336_102426_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021207

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021207_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021207_1

4022406-4022537

Orphan

Consensus_repeat	Method
TTTTCAATATTGGTGAT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP021207_1

>merge|NZ_CP021207|1|4022406-4022537|PILER-CR
TTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCATGTTTTCAATATTGGTGAGGAGCTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGAT

>NZ_CP021207|1|1|4022406-4022537|PILER-CR
TTTCAATATTGGTGATC	CATAAAACAATATTGAAAATTTCTTTTTGCTACGCCATGT
TTTCAATATTGGTGAGG	AGCTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACAT
TTTCAATATTGGTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021207.1\|WP_001295758.1\|4015005_4015596_-\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP021207.1\|WP_001287712.1\|4024404_4025691_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP021207.1\|WP_001295759.1\|4016495_4018049_-\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP021207.1\|WP_000347117.1\|4019467_4020610_-\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP021207.1\|WP_000349970.1\|4018121_4019339_-\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP021207.1\|WP_000196510.1\|4014238_4014457_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021207.1\|WP_001160964.1\|4030850_4031135_+\|CcdB-family-protein	unknown	unknown	gnl\|CDD\|376629
NZ_CP021207.1\|WP_000333124.1\|4014491_4014887_+\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP021207.1\|WP_000600725.1\|4027472_4028003_+\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP021207.1\|WP_001183209.1\|4026033_4027365_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP021207.1\|WP_000692217.1\|4022627_4023398_+\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP021207.1\|WP_061089100.1\|4027995_4029858_+\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP021207.1\|WP_001091513.1\|4023412_4024354_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP021207.1\|WP_000125566.1\|4030614_4030848_+\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	unknown	unknown	gnl\|CDD\|227619
NZ_CP021207.1\|WP_000004399.1\|4015601_4016387_-\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP021207.1\|WP_024190995.1\|4030049_4030529_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP021207.1\|WP_001126342.1\|4011009_4014231_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP021207.1\|WP_000203744.1\|4025687_4025975_+\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP021207.1\|WP_000787105.1\|4020640_4022155_-\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP021207.1\|WP_001295757.1\|4009843_4010992_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139

Protein	Function_ID	Function_description	E-value
NZ_CP021207.1\|WP_001295758.1\|4015005_4015596_-\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.67383e-142
NZ_CP021207.1\|WP_001287712.1\|4024404_4025691_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP021207.1\|WP_001295759.1\|4016495_4018049_-\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP021207.1\|WP_000347117.1\|4019467_4020610_-\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP021207.1\|WP_000349970.1\|4018121_4019339_-\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP021207.1\|WP_001295757.1\|4009843_4010992_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP021207.1\|WP_000333124.1\|4014491_4014887_+\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.21297e-74
NZ_CP021207.1\|WP_000600725.1\|4027472_4028003_+\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP021207.1\|WP_001160964.1\|4030850_4031135_+\|CcdB-family-protein	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	1.5415e-33
NZ_CP021207.1\|WP_000692217.1\|4022627_4023398_+\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	2.42827e-170
NZ_CP021207.1\|WP_061089100.1\|4027995_4029858_+\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP021207.1\|WP_001091513.1\|4023412_4024354_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP021207.1\|WP_000125566.1\|4030614_4030848_+\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	2.77856e-23
NZ_CP021207.1\|WP_000004399.1\|4015601_4016387_-\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	6.92249e-179
NZ_CP021207.1\|WP_024190995.1\|4030049_4030529_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	6.13426e-126
NZ_CP021207.1\|WP_001183209.1\|4026033_4027365_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.5672e-59
NZ_CP021207.1\|WP_000203744.1\|4025687_4025975_+\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.0161e-68
NZ_CP021207.1\|WP_000787105.1\|4020640_4022155_-\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP021207.1\|WP_001126342.1\|4011009_4014231_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0

>NZ_CP021207.1|WP_000787105.1|4020640_4022155_-|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSVLVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKY
>NZ_CP021207.1|WP_000347117.1|4019467_4020610_-|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP021207.1|WP_000349970.1|4018121_4019339_-|L-carnitine-CoA-transferase
MDHLTMPKFGPLSGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIAECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP021207.1|WP_001295759.1|4016495_4018049_-|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDIYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSVRAFWGQVQKYRATVTECIPMMIRTLMVQPPSVNDRQHCLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP021207.1|WP_000004399.1|4015601_4016387_-|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP021207.1|WP_001295758.1|4015005_4015596_-|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVLAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP021207.1|WP_000333124.1|4014491_4014887_+|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP021207.1|WP_000196510.1|4014238_4014457_-|hypothetical-protein
MTRFAAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKRSSSENRISYLIKLADEKYPP
>NZ_CP021207.1|WP_001126342.1|4011009_4014231_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP021207.1|WP_001295757.1|4009843_4010992_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGSWTLTGGLPEAKKEDELPYHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIALIEQYRKTAK
>NZ_CP021207.1|WP_000692217.1|4022627_4023398_+|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP021207.1|WP_001091513.1|4023412_4024354_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLSGKPDERMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLNAAVSNDASAVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP021207.1|WP_001287712.1|4024404_4025691_+|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFNGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP021207.1|WP_000203744.1|4025687_4025975_+|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKRDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP021207.1|WP_001183209.1|4026033_4027365_+|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFEEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWTLPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP021207.1|WP_000600725.1|4027472_4028003_+|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP021207.1|WP_061089100.1|4027995_4029858_+|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGSFVLSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP021207.1|WP_024190995.1|4030049_4030529_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLARFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP021207.1|WP_000125566.1|4030614_4030848_+|type-II-toxin-antitoxin-system-CcdA-family-antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
>NZ_CP021207.1|WP_001160964.1|4030850_4031135_+|CcdB-family-protein
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFSRIRPPERLNPILLLIDGKEYVLMTHETATVPVNALGTKFCDASAHRTLIK

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Crispr_ID: NZ_CP021207_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021207_2

4799758-4799899

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021207_2

>merge|NZ_CP021207|2|4799758-4799899|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAGAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGCGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

>NZ_CP021207|2|1|4799758-4799899|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	AAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGC
GCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021207.1\|WP_000735581.1\|4791644_4792613_+\|TRAP-transporter-substrate-binding-protein-DctP	unknown	unknown	gnl\|CDD\|270387
NZ_CP021207.1\|WP_001305582.1\|4795979_4796087_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021207.1\|WP_001181475.1\|4800072_4802874_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP021207.1\|WP_000725054.1\|4811994_4813188_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP021207.1\|WP_000126143.1\|4793133_4794444_+\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP021207.1\|WP_061089105.1\|4798994_4799711_+\|succinate-dehydrogenase-iron-sulfur-subunit-SdhB	unknown	unknown	gnl\|CDD\|235652
NZ_CP021207.1\|WP_001531490.1\|4807229_4809146_+\|PTS-2-O-a-mannosyl-D-glycerate-transporter-subunit-IIABC	unknown	unknown	gnl\|CDD\|182066
NZ_CP021207.1\|WP_001048602.1\|4804199_4805366_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP021207.1\|WP_000099866.1\|4802888_4804106_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP021207.1\|WP_000254365.1\|4796865_4797213_+\|succinate-dehydrogenase-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|181901
NZ_CP021207.1\|WP_000648958.1\|4809163_4811797_+\|mannosylglycerate-hydrolase	unknown	unknown	gnl\|CDD\|182093
NZ_CP021207.1\|WP_000785832.1\|4794490_4795774_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP021207.1\|WP_000509910.1\|4806338_4807061_-\|mannosyl-D-glycerate-transport/metabolism-system-transcriptional-repressor-MngR	unknown	unknown	gnl\|CDD\|182065
NZ_CP021207.1\|WP_000025458.1\|4805365_4806235_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP021207.1\|WP_001237779.1\|4792672_4793134_+\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NZ_CP021207.1\|WP_000399432.1\|4790420_4791617_+\|UxaA-family-hydrolase	unknown	unknown	gnl\|CDD\|377287
NZ_CP021207.1\|WP_000775540.1\|4797212_4798979_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
NZ_CP021207.1\|WP_000568275.1\|4816314_4817454_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NZ_CP021207.1\|WP_000884361.1\|4814730_4816299_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052
NZ_CP021207.1\|WP_000263355.1\|4796467_4796872_+\|succinate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900

Protein	Function_ID	Function_description	E-value
NZ_CP021207.1\|WP_000735581.1\|4791644_4792613_+\|TRAP-transporter-substrate-binding-protein-DctP	gnl\|CDD\|270387	cd13669, PBP2_TRAP_TM0322_like, Periplasmic component of TRAP-type C4-dicarboxylate transport system TM0322 from Thermotoga maritima and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the hyperthermophilic bacterium Thermotoga maritima TRAP-type C4-dicarboxylate transport system TM0322 and its closely related proteins. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.46494e-145
NZ_CP021207.1\|WP_000568275.1\|4816314_4817454_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
NZ_CP021207.1\|WP_001181475.1\|4800072_4802874_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP021207.1\|WP_000725054.1\|4811994_4813188_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.01578e-17
NZ_CP021207.1\|WP_000126143.1\|4793133_4794444_+\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	2.11617e-118
NZ_CP021207.1\|WP_061089105.1\|4798994_4799711_+\|succinate-dehydrogenase-iron-sulfur-subunit-SdhB	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	4.45439e-166
NZ_CP021207.1\|WP_001531490.1\|4807229_4809146_+\|PTS-2-O-a-mannosyl-D-glycerate-transporter-subunit-IIABC	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	0
NZ_CP021207.1\|WP_001048602.1\|4804199_4805366_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP021207.1\|WP_000099866.1\|4802888_4804106_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP021207.1\|WP_000254365.1\|4796865_4797213_+\|succinate-dehydrogenase-membrane-anchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	5.54037e-58
NZ_CP021207.1\|WP_000648958.1\|4809163_4811797_+\|mannosylglycerate-hydrolase	gnl\|CDD\|182093	PRK09819, PRK09819, mannosylglycerate hydrolase.	0
NZ_CP021207.1\|WP_000785832.1\|4794490_4795774_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP021207.1\|WP_000509910.1\|4806338_4807061_-\|mannosyl-D-glycerate-transport/metabolism-system-transcriptional-repressor-MngR	gnl\|CDD\|182065	PRK09764, PRK09764, GntR family transcriptional regulator.	1.54929e-163
NZ_CP021207.1\|WP_000025458.1\|4805365_4806235_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP021207.1\|WP_001237779.1\|4792672_4793134_+\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	2.66483e-21
NZ_CP021207.1\|WP_000399432.1\|4790420_4791617_+\|UxaA-family-hydrolase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	5.6924e-134
NZ_CP021207.1\|WP_000775540.1\|4797212_4798979_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP021207.1\|WP_000884361.1\|4814730_4816299_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
NZ_CP021207.1\|WP_000263355.1\|4796467_4796872_+\|succinate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	3.50714e-82

>NZ_CP021207.1|WP_061089105.1|4798994_4799711_+|succinate-dehydrogenase-iron-sulfur-subunit-SdhB
MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDMFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>NZ_CP021207.1|WP_000775540.1|4797212_4798979_+|succinate-dehydrogenase-flavoprotein-subunit
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>NZ_CP021207.1|WP_000254365.1|4796865_4797213_+|succinate-dehydrogenase-membrane-anchor-subunit
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>NZ_CP021207.1|WP_000263355.1|4796467_4796872_+|succinate-dehydrogenase-cytochrome-b556-subunit
MWALFMIRNVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
>NZ_CP021207.1|WP_001305582.1|4795979_4796087_-|hypothetical-protein
MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV
>NZ_CP021207.1|WP_000785832.1|4794490_4795774_-|citrate-(Si)-synthase
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYAQRDFKSDIKK
>NZ_CP021207.1|WP_000126143.1|4793133_4794444_+|TRAP-transporter-large-permease
MTALSELLAGSWLDNWLMIIPLMFVCLFINMPVWLAMFCGILTYFLCYSNVPLMVAIQRLIATTQTPSLLAIPFFILLGTLMSYTGIAARILQIANVLIGRMRGGLGGANILVSTMMGGVSASNLADAAMLSRMMVPEMEQKGYSRGFAAAITASGSLITPIIPPGIALILYGLVADVSIGSMFMAGILPGLLCSAMLIVTVWLVAIRRGLKPSSEHWPKPKEVSVALVQAWPALFLIVAVIGGIRANIFTPTEAGAVAVLLVMFIGFVIYRELKISHVFTALSETARSTASVMLIIMASAALGWIFSLERAGITVAEFVTSLTDNKYVFLLIINLLLLVLGMFLEGSAILLILVPLLKPVVAHFGIDPVHFGIIMILNLSLGTLSPPVGTVMLLVCNTVQVSVGQFMREAVPLLISLILLLLVITYIPAISLLLV
>NZ_CP021207.1|WP_001237779.1|4792672_4793134_+|TRAP-transporter-small-permease
MRLLGKMIEVAAVLTLFILVIMTIAAVIMRYCFHMPLQWTEEVSGLLMIWVVMFGAVVAERDNTHLSIPFLADALTSRGQRILAFLVSLMSIILLVVMAWSAWKLAAGTAFKTTQILKISWFWIDIAVTVGAIGVACFTALQLIKKTPRKEGE
>NZ_CP021207.1|WP_000735581.1|4791644_4792613_+|TRAP-transporter-substrate-binding-protein-DctP
MKKLLTPLLFLLALFSPMLNAAPVTIKIAYESNPGEPADTVVKHWAELVKKKSNGDIVFELYPSSQLGSKQDITEQALMGMNIITISDVGFLTDYDADLGILFGPYLTEDPQKLFAIYASDWFKQKEQKLREKGVHIVMSNYLYGTRQIIAKKPIRTPEDLKGMKIRVPNNVMQIKAIEAMGATPTPMPLGDVYPALTQGMIDGVENPVSVLYGQKLHEQAKYLSMVNYLTNTSLWLGGEAFFSTLTPAQLDIIHQTAYEAGLYSQKITTEQDATMLKTMQEQGVEIIYPDVAPFKEKALKVYQQFPEWTPGLYDTIQQQLK
>NZ_CP021207.1|WP_000399432.1|4790420_4791617_+|UxaA-family-hydrolase
MEGYVRQNGRPGIRNTVQVIFMVECASHVAKKIAEGFPCHDVQYFGFSGCYPSDYGYRLVKNLATHSNVGGVLIISLGCENFDRRRLEQEVRESGRPCHTLVIQENKGTTNTITLGKQLVAEMLEQLADTPRCILNWSDLVVGTICGGSDGTSGITGNPAVGRAFDQLLEKGATCIFEESGELLGCEQHMMSRAASSQARDAIEVAMTKAERYYSLMGLGSFSNGNAEGGLTTQEEKSLGAYTKSGDALIAGVILPTQQTPFPGLWLMDVVPDGEPRFGYPNINDSSEALELIASGCHMVLFTTGRGSVIGSVIAPIIKVCNNPQTWEHLSDDMDVNAGRVISEGATLDDIADDIMQVIEHVANGQYCAAERLEHQEFVLTYKAFDYSKSAVCRADPR
>NZ_CP021207.1|WP_001181475.1|4800072_4802874_+|2-oxoglutarate-dehydrogenase-E1-component
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAISEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>NZ_CP021207.1|WP_000099866.1|4802888_4804106_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSSVDILVPDLPESVADATVATWHKKPGDVVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>NZ_CP021207.1|WP_001048602.1|4804199_4805366_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK
>NZ_CP021207.1|WP_000025458.1|4805365_4806235_+|succinate--CoA-ligase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
>NZ_CP021207.1|WP_000509910.1|4806338_4807061_-|mannosyl-D-glycerate-transport/metabolism-system-transcriptional-repressor-MngR
MGHKPLYRQIADRIREQITCGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVETHSEVLIFEVIPADNFLQQQLQISEQDRVWHVKRVRYRKQKPVALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGQVFEYSRNAFNTDDYKFTLIAQRKSPR
>NZ_CP021207.1|WP_001531490.1|4807229_4809146_+|PTS-2-O-a-mannosyl-D-glycerate-transporter-subunit-IIABC
MNLTTLTHRDALCLNVRFTSREEAIHALTQRLAALGKISSTEQFLEEVYCRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTTHMKLLTALTTRLADDELRARIQSATTPDELLSALDDKGDAQHTASFSYAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNIYVEKQGANGIEERLTAEQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGGMLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGNNALLLGAILGFMCSFDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRHHAVKHGNYLTDGVMP
>NZ_CP021207.1|WP_000648958.1|4809163_4811797_+|mannosylglycerate-hydrolase
MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQDNEYKYYVLDGQTAILEDYFAVKPENKDRVKKLVEGGKLIIGPWYTQTDTTIVSAESIVRNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQSSDGSEVTAQVLPLGYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMEKLREIYPQRKFVMSRFEEVFEQIEAQRESLAILKGEFIDGKYMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFDYHHGLLEKMWKEILKNHAHDSIGCCCSDKVHREIVARFELAEDMADNLIRFYMRKIADNMPQSDADKLVLFNLMPWPREEVINTTVRLRGSQFNLRDGRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQISQIVPSMGYRTLYIEANQPGNVVTPKSKTEGILENAFWQIALNEDGSLRLVDKDSGVRYDRVFQIEEGSDDGDEYDYSPAKEEWAITSANAKPQYDIIHEAWQSRAIIRYEIAVPRNLSERRAKQCSGRVGVETVITLSHNSRRIDADINLDNQADDHRIRVLIPTPFNTDVVLADTQFGSLTRPVKDCAMNVWQQEGWKEAPVPVWNMLNYAVLQEGRNGIAVFSEGLREFEVIGEENKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVSDSQLRGSFSCRLSLFSYIGTPVTAGVAQQARAWLTPVQCYNKIPWDAMKLNKAKFNVPESYSLLKMPPVGCLISALKKAEDRQELILRLFNPAELTSCDATVAFSRKVMTCTETMMNERFNTEKNEVLKELALFLPGQSRTFSYRIV
>NZ_CP021207.1|WP_000725054.1|4811994_4813188_+|tetratricopeptide-repeat-protein
MKKIVLPVALALLGMNAGAYAADVSIDILSATVKDKRIEGASVTLQRNGAQSVSGITNTSGSISLGTSFADNKDALLIVKKEGYSNLVVKCPCAGMTYAISPVMTNLDGMRVVLSWGEKPFDLDSHLIFPGGHIYFDSKEGTDANLDVDDTDSYGPETVTISKKHFGESYIYAVQDYSNKGLPNSNYLSASKAKVFVYVGSSLVRSYSVPAGKRGNIWTVFKLNPNGEFEDINSVTSANFNGTTLDVRDLATVIMPATDSSAPASPAMQNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGVNAATTRANSYYNIAKIYETSGQNAEALQHYQLAYTEKNKPSYEEAIARVKTKM
>NZ_CP021207.1|WP_000884361.1|4814730_4816299_+|cytochrome-ubiquinol-oxidase-subunit-I
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
>NZ_CP021207.1|WP_000568275.1|4816314_4817454_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY

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Crispr_ID: NZ_CP021207_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021207_3

4965965-4966047

Orphan

I-F

Consensus_repeat	Method
AGTTCACTGCCGTACAGGCAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021207_3

>merge|NZ_CP021207|3|4965965-4966047|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGTTCACTGCCGTACAGGCAGAT

>NZ_CP021207|3|2|4965965-4966047|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCT	TAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACA
AGTTCACTGCCGTACAGGCAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021207.1\|WP_000188152.1\|4960559_4962506_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP021207.1\|WP_000077041.1\|4973435_4977542_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP021207.1\|WP_000410785.1\|4962578_4962803_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP021207.1\|WP_000488716.1\|4955565_4956261_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP021207.1\|WP_000599803.1\|4956685_4958344_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP021207.1\|WP_001040187.1\|4966437_4966656_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP021207.1\|WP_001351020.1\|4958340_4959297_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP021207.1\|WP_000491137.1\|4954251_4955151_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP021207.1\|WP_001385255.1\|4971297_4972263_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP021207.1\|WP_001295343.1\|4977700_4978312_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP021207.1\|WP_000067797.1\|4978322_4979666_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP021207.1\|WP_000746478.1\|4959447_4960563_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP021207.1\|WP_001202204.1\|4967686_4969408_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP021207.1\|WP_000886683.1\|4979756_4981049_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP021207.1\|WP_000520781.1\|4963125_4963446_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP021207.1\|WP_000934041.1\|4963476_4965753_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP021207.1\|WP_000228473.1\|4972806_4973301_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP021207.1\|WP_001043561.1\|4969408_4971175_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP021207.1\|WP_000458841.1\|4952455_4954108_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP021207.1\|WP_001241674.1\|4966940_4967645_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720

Protein	Function_ID	Function_description	E-value
NZ_CP021207.1\|WP_000188152.1\|4960559_4962506_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP021207.1\|WP_000077041.1\|4973435_4977542_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP021207.1\|WP_000410785.1\|4962578_4962803_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP021207.1\|WP_000488716.1\|4955565_4956261_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP021207.1\|WP_000599803.1\|4956685_4958344_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP021207.1\|WP_001040187.1\|4966437_4966656_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP021207.1\|WP_001351020.1\|4958340_4959297_-\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131
NZ_CP021207.1\|WP_000491137.1\|4954251_4955151_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
NZ_CP021207.1\|WP_001385255.1\|4971297_4972263_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP021207.1\|WP_001295343.1\|4977700_4978312_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP021207.1\|WP_000067797.1\|4978322_4979666_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP021207.1\|WP_000746478.1\|4959447_4960563_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP021207.1\|WP_001202204.1\|4967686_4969408_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP021207.1\|WP_000886683.1\|4979756_4981049_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP021207.1\|WP_000520781.1\|4963125_4963446_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP021207.1\|WP_000934041.1\|4963476_4965753_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP021207.1\|WP_000228473.1\|4972806_4973301_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP021207.1\|WP_001043561.1\|4969408_4971175_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP021207.1\|WP_000458841.1\|4952455_4954108_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP021207.1\|WP_001241674.1\|4966940_4967645_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139

>NZ_CP021207.1|WP_000934041.1|4963476_4965753_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP021207.1|WP_000520781.1|4963125_4963446_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP021207.1|WP_000410785.1|4962578_4962803_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP021207.1|WP_000188152.1|4960559_4962506_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP021207.1|WP_000746478.1|4959447_4960563_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP021207.1|WP_001351020.1|4958340_4959297_-|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP021207.1|WP_000599803.1|4956685_4958344_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP021207.1|WP_000488716.1|4955565_4956261_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP021207.1|WP_000491137.1|4954251_4955151_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP021207.1|WP_000458841.1|4952455_4954108_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP021207.1|WP_001040187.1|4966437_4966656_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP021207.1|WP_001241674.1|4966940_4967645_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP021207.1|WP_001202204.1|4967686_4969408_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP021207.1|WP_001043561.1|4969408_4971175_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP021207.1|WP_001385255.1|4971297_4972263_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP021207.1|WP_000228473.1|4972806_4973301_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP021207.1|WP_000077041.1|4973435_4977542_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP021207.1|WP_001295343.1|4977700_4978312_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP021207.1|WP_000067797.1|4978322_4979666_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP021207.1|WP_000886683.1|4979756_4981049_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021207_1	1.2\|4022480\|42\|NZ_CP021207\|PILER-CR	4022480-4022521	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
NZ_CP021207_1	1.1\|4022423\|40\|NZ_CP021207\|PILER-CR	4022423-4022462	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	2	0.95
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12111-12158	8	0.833
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	424237-424284	8	0.833
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7391-7438	10	0.792
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84215-84262	10	0.792
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87125-87172	10	0.792
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229237-229284	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229338-229385	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229439-229486	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239731-239778	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239832-239879	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239933-239980	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15006-15053	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230643-230690	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230744-230791	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230845-230892	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211613-211660	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211714-211761	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211815-211862	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31250-31297	11	0.771
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3371-3418	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4012-4059	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4113-4160	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208980-209027	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3370-3417	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4011-4058	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4112-4159	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219474-219521	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3370-3417	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4011-4058	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4112-4159	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210308-210355	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3370-3417	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4011-4058	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4112-4159	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191263-191310	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	270-317	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101195-101242	12	0.75
NZ_CP021207_2	2.1\|4799805\|48\|NZ_CP021207\|CRISPRCasFinder	4799805-4799852	48	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	158-205	13	0.729

1. spacer 1.2|4022480|42|NZ_CP021207|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

gagcttaacaatattgaaagttggatttatctgcgtgtgaca	CRISPR spacer
gaacttaacaatattgaaagttggatttatctgcgtgtgaca	Protospacer
**.***************************************

2. spacer 1.1|4022423|40|NZ_CP021207|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

ccataaaacaatattgaaaatttctttttgctacgccatg	CRISPR spacer
ccataaagcaatattgaaaatttcttttttctacgccatg	Protospacer
*******.********************* **********

3. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* ****************   *.*

4. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggcaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *********  . .

5. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

6. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

7. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  ****************    **

8. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

9. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

10. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

11. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

12. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

13. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

14. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* ****************  ..*.

15. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

16. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

17. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

18. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

19. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

20. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

21. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  ****************   * .

22. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

23. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

24. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

25. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

26. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

27. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

28. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

29. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

30. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

31. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

32. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

33. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

34. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

35. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

36. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

37. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

38. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  ****************   * .

39. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 **.   ****************** ***************.   *..

40. spacer 2.1|4799805|48|NZ_CP021207|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. ***************    * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

427868 : 488007

Escherichia_phage(39.62%)

tRNA,transposase,tail,lysis,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_170386723.1\|427868_428840_-\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
WP_000611911.1\|429043_429796_-	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
WP_000945011.1\|429990_430506_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.1e-24	42.8
WP_000156573.1\|431048_431864_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000587198.1\|431960_432989_+	HlyD family secretion protein	NA	NA	NA	NA
WP_000987381.1\|432985_434500_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_001046838.1\|434694_435258_+	DNA endonuclease SmrA	NA	NA	NA	NA
WP_001296045.1\|435278_436511_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387388.1\|436765_437749_+	zinc transporter ZntB	NA	NA	NA	NA
WP_000123789.1\|438226_439600_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-52	33.1
WP_001157412.1\|439727_440663_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.2e-145	98.4
WP_000040852.1\|440714_441950_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	5.5e-240	98.8
WP_000079604.1\|441951_442167_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_000276809.1\|442245_442455_-	double-strand break reduction protein RcbA	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
WP_001317028.1\|442447_442642_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_000166319.1\|442698_443508_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_086353125.1\|443500_446101_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	1.4e-248	63.5
WP_000632297.1\|446202_446478_-	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
WP_001352098.1\|446552_446723_-	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_000560223.1\|446722_446944_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
WP_001312793.1\|447385_447874_+	superinfection exclusion protein B	NA	NA	NA	NA
WP_077766793.1\|447870_448026_-	DUF1391 family protein	M4QQ57	Salicola_phage	1.8e-07	55.3
WP_000948459.1\|448345_448822_-	DNA-binding transcriptional repressor RacR	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
WP_000712069.1\|448945_449242_+	toxin YdaS	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
WP_000693797.1\|449264_449687_+	phage protein	A0A0U2RXZ9	Escherichia_phage	1.5e-69	95.0
WP_000788970.1\|450562_451309_+	ATP-binding protein	V5UQI5	Shigella_phage	3.8e-111	78.9
WP_123009612.1\|451331_452093_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	6.8e-116	87.0
WP_001141108.1\|452109_452532_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	7.4e-64	90.6
WP_000137958.1\|452693_453197_+	hypothetical protein	Q9G078	Enterobacteria_phage	4.3e-18	39.7
WP_000200358.1\|453317_454091_-	KilA-N domain-containing protein	A0A1L2BWW1	Bacteriophage	9.6e-09	42.6
WP_000813254.1\|454613_454769_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_001410105.1\|454935_455214_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.6e-11	46.9
WP_086353127.1\|455215_456265_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	9.4e-108	54.0
WP_001761874.1\|456277_456652_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	7.6e-36	64.5
WP_032342160.1\|456648_457470_+	antitermination protein	K7P7B9	Enterobacteria_phage	2.6e-81	60.4
WP_021562591.1\|457750_458791_+	hypothetical protein	NA	NA	NA	NA
WP_024233158.1\|458791_459301_+	hypothetical protein	NA	NA	NA	NA
WP_000839599.1\|459614_459830_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	2.0e-33	98.6
WP_000193293.1\|459834_460179_+	YdfR family protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
WP_000370551.1\|460144_460417_-	hypothetical protein	NA	NA	NA	NA
WP_000992105.1\|460522_461056_+	lysozyme	K7PLY1	Enterobacteria_phage	4.8e-100	96.0
WP_001228696.1\|461272_461458_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.8e-15	98.2
WP_024165216.1\|461654_463112_+	potassium transporter TrkG	NA	NA	NA	NA
WP_001291093.1\|463249_464041_+	ParB N-terminal domain-containing protein	R4TG31	Halovirus	2.8e-48	40.2
WP_001204035.1\|464033_464966_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.1e-83	54.9
WP_000613571.1\|464901_465153_+	hypothetical protein	NA	NA	NA	NA
WP_000089450.1\|465156_466251_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.0e-112	80.5
WP_000625348.1\|466231_467533_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	59.6
WP_000763702.1\|467535_468942_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	1.0e-186	69.2
WP_001363932.1\|468925_470038_+	hypothetical protein	I6PD76	Cronobacter_phage	7.1e-114	54.5
WP_000770042.1\|470142_470907_+	hypothetical protein	G8C7P6	Escherichia_phage	6.9e-84	64.2
WP_000918487.1\|471005_472145_+	hypothetical protein	G8C7P7	Escherichia_phage	7.4e-159	75.0
WP_000908084.1\|472187_472364_+	hypothetical protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
WP_000634214.1\|472367_472763_+	hypothetical protein	NA	NA	NA	NA
WP_000524260.1\|472762_473146_+	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
WP_001029819.1\|473146_473527_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	6.5e-19	44.4
WP_000673077.1\|473523_473916_+	hypothetical protein	NA	NA	NA	NA
WP_000094292.1\|473942_474905_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	4.5e-56	39.2
WP_012565075.1\|475055_475415_+	hypothetical protein	NA	NA	NA	NA
WP_086353128.1\|475886_479120_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	2.3e-104	33.3
WP_000024051.1\|479112_479451_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
WP_024238971.1\|479450_480149_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.6e-127	94.4
WP_024177847.1\|480153_480897_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.8e-145	96.0
WP_000090882.1\|480833_481436_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.2e-88	85.1
WP_086353129.1\|481496_484976_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.1
WP_001518415.1\|485043_485643_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	7.5e-102	92.0
WP_086353130.1\|485707_487732_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M0V5	Enterobacteria_phage	8.5e-182	72.7
WP_000654172.1\|487728_488007_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4

DBSCAN-SWA_2

905455 : 993703

104

Escherichia_phage(22.22%)

tRNA,capsid,transposase,tail,plate,integrase,holin,portal,terminase

attL 951154:951213|attR 993765:993889

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099156422.1\|905455_906804_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.7e-74	52.4
WP_000568520.1\|906913_907924_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_000580323.1\|907932_908544_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_072093883.1\|908682_908748_-	hypothetical protein	NA	NA	NA	NA
WP_001024911.1\|908818_909421_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_001295503.1\|909422_909944_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_000907234.1\|909978_910719_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_077249130.1\|910747_911200_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_001258676.1\|911192_912965_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_000891625.1\|913274_913841_+	hydrolase	NA	NA	NA	NA
WP_000639277.1\|913837_914656_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000252980.1\|914708_915104_+	MAPEG family protein	NA	NA	NA	NA
WP_000019588.1\|915144_915888_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000564759.1\|915884_916856_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000176764.1\|916891_919321_-	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_001214293.1\|919345_920446_-	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_001185734.1\|920833_921580_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001490174.1\|921593_922160_-	VOC family protein	NA	NA	NA	NA
WP_001025326.1\|922375_924109_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001202076.1\|924161_924554_-	flagellar protein FlhE	NA	NA	NA	NA
WP_000066973.1\|924553_926632_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001278946.1\|926624_927773_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000983600.1\|927961_928606_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_000763867.1\|928616_929006_-	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000036371.1\|929020_930070_-	protein-glutamate methylesterase/protein glutamine deamidase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000204320.1\|930072_930933_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_001296146.1\|931223_932885_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000147302.1\|933029_933533_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_001531763.1\|933553_935518_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_000795641.1\|935522_936449_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_000906342.1\|936445_937333_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_001291603.1\|937459_938038_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_001295647.1\|938040_938391_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_000122413.1\|939170_939599_+	universal stress protein UspC	NA	NA	NA	NA
WP_001296148.1\|939605_941030_-	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_001296149.1\|941004_941805_-	trehalose-phosphatase	NA	NA	NA	NA
WP_000100203.1\|941971_942958_-	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001187827.1\|942972_944487_-	arabinose ABC transporter ATP binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000548680.1\|944556_945546_-	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_000179469.1\|946342_946846_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000082127.1\|946923_947175_-	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_010723106.1\|947289_947376_-	stress response protein AzuC	NA	NA	NA	NA
WP_001237881.1\|947639_947963_+	hypothetical protein	NA	NA	NA	NA
WP_000917208.1\|948134_948632_+	non-heme ferritin	NA	NA	NA	NA
WP_000377224.1\|948669_948909_-	YecH family protein	NA	NA	NA	NA
WP_000797555.1\|949099_950311_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_061089167.1\|950361_951027_-	UPF0149 family protein YecA	NA	NA	NA	NA
951154:951213	attL	NA	NA	NA	NA
WP_001296152.1\|951498_951918_-	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_001531766.1\|952084_953128_-	hypothetical protein	R9TNM7	Vibrio_phage	2.0e-33	28.5
WP_001531767.1\|953131_953356_-\|tail	tail protein X	NA	NA	NA	NA
WP_001531768.1\|953517_953907_-\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_086353138.1\|953942_955583_-	hypothetical protein	A0A2I7R3J9	Vibrio_phage	4.0e-20	29.6
WP_000444667.1\|955691_955973_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000785563.1\|955985_956498_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_000117510.1\|956515_958018_-\|tail	phage tail sheath subtilisin-like domain-containing protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000626358.1\|958014_958404_-	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_001531771.1\|958403_959588_-\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000203868.1\|959580_960207_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_000633314.1\|960209_961130_-\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000901289.1\|961126_961468_-	GPW/gp25 family protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000079174.1\|961470_962373_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000015612.1\|962353_962890_-	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|962886_963567_-	hypothetical protein	NA	NA	NA	NA
WP_001531773.1\|963598_963979_-	hypothetical protein	NA	NA	NA	NA
WP_000105179.1\|963975_964395_-	DNA-packaging protein	NA	NA	NA	NA
WP_063268576.1\|964429_965464_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	1.2e-104	56.2
WP_000206292.1\|965522_965852_-	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001145892.1\|965851_967159_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000126513.1\|967158_968733_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_000203897.1\|968729_968963_-	hypothetical protein	NA	NA	NA	NA
WP_000148195.1\|968962_970825_-\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000168117.1\|970811_971378_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_001531775.1\|971746_971992_+	hypothetical protein	NA	NA	NA	NA
WP_000734931.1\|972051_972246_-	hypothetical protein	NA	NA	NA	NA
WP_000131873.1\|972253_972733_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000172496.1\|972732_973005_-\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_001294589.1\|973004_973388_-	hypothetical protein	NA	NA	NA	NA
WP_000064384.1\|973500_974172_-	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_000717783.1\|974171_974465_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000057010.1\|974461_975058_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_001025459.1\|975135_975315_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|975466_976108_-	hypothetical protein	NA	NA	NA	NA
WP_000536919.1\|976351_976585_+	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|976983_977472_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_001138663.1\|977481_978087_+	hypothetical protein	NA	NA	NA	NA
WP_000536231.1\|978549_979248_-	hypothetical protein	Q858R8	Enterobacteria_phage	1.5e-117	91.4
WP_001237642.1\|980436_981360_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_001531776.1\|981534_982323_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_000661082.1\|983004_983229_-	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|983225_983537_-	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000918616.1\|983533_983770_-	hypothetical protein	NA	NA	NA	NA
WP_000214056.1\|983771_984182_-	hypothetical protein	NA	NA	NA	NA
WP_000609322.1\|984220_985636_-	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_001023813.1\|985625_986381_-	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
WP_000943914.1\|986377_986602_-	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_000431205.1\|986641_987118_-	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000360804.1\|987176_987407_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_001296165.1\|987505_987919_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000388260.1\|988929_989250_+	hypothetical protein	NA	NA	NA	NA
WP_000151806.1\|989280_991497_+	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000100753.1\|991493_992063_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
WP_000916334.1\|992062_992245_+	hypothetical protein	NA	NA	NA	NA
WP_000833838.1\|992454_992718_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_001531780.1\|992686_993703_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
993765:993889	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1170750 : 1177053

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001100793.1\|1170750_1171293_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8
WP_000857525.1\|1171297_1172176_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.5
WP_001023641.1\|1172233_1173133_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_000699407.1\|1173132_1174218_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-101	53.9
WP_000183040.1\|1174590_1175484_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.0e-46	42.0
WP_001116066.1\|1175658_1177053_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0

DBSCAN-SWA_4

1271230 : 1280675

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292786.1\|1271230_1272367_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7
WP_001296230.1\|1272363_1274367_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001296231.1\|1274491_1274953_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001295430.1\|1274993_1275464_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|1275510_1276230_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|1276226_1277912_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240408.1\|1278133_1278865_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001216963.1\|1278924_1279032_+	protein YohO	NA	NA	NA	NA
WP_000783109.1\|1279012_1279744_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569347.1\|1279748_1280675_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8

DBSCAN-SWA_5

1858834 : 1865974

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000103863.1\|1858834_1861396_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
WP_001141293.1\|1861501_1862158_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_001296319.1\|1862208_1862976_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_000847996.1\|1863171_1864080_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_000590411.1\|1864076_1865339_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_001279004.1\|1865335_1865974_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5

DBSCAN-SWA_6

3204701 : 3303900

102

Escherichia_phage(34.04%)

tRNA,lysis,capsid,transposase,protease,head,tail,plate,holin,portal,integrase,terminase

attL 3199194:3199211|attR 3274425:3274442

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3199194:3199211	attL	NA	NA	NA	NA
WP_000560981.1\|3204701_3205139_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001297068.1\|3205183_3206125_+	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_001385591.1\|3206188_3207097_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000897302.1\|3207325_3207637_+	hypothetical protein	NA	NA	NA	NA
WP_000356397.1\|3207637_3207928_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001296612.1\|3208286_3208565_+	hypothetical protein	NA	NA	NA	NA
WP_001251293.1\|3208961_3209180_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_032140890.1\|3209364_3209814_-	hypothetical protein	NA	NA	NA	NA
WP_001038650.1\|3210129_3210978_-	hypothetical protein	NA	NA	NA	NA
WP_001068514.1\|3211267_3211510_+	hypothetical protein	NA	NA	NA	NA
WP_000027696.1\|3211691_3212621_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_000829013.1\|3212617_3213253_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000331383.1\|3213249_3214152_-	formate dehydrogenase O subunit beta	NA	NA	NA	NA
WP_077633686.1\|3214164_3217215_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	1.1e-07	23.8
WP_000753589.1\|3217408_3218242_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_000749934.1\|3219237_3220632_+	carbohydrate porin	NA	NA	NA	NA
WP_000619499.1\|3220672_3220987_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_001179746.1\|3220996_3221821_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_001296617.1\|3222087_3223347_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_000144100.1\|3223343_3224813_-	rhamnulokinase	NA	NA	NA	NA
WP_000217147.1\|3225100_3225937_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_001296618.1\|3225920_3226859_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000063507.1\|3226855_3227890_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_001296619.1\|3228174_3228795_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	5.4e-63	58.9
WP_001166063.1\|3229054_3230038_+	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_001270242.1\|3230186_3230861_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000580417.1\|3231031_3232405_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9
WP_001033720.1\|3232401_3233100_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_086353220.1\|3233249_3233750_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
WP_000985246.1\|3233935_3234916_-\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	4.7e-186	100.0
WP_000777029.1\|3234985_3235279_-	helix-turn-helix domain-containing protein	Q1JS37	Enterobacteria_phage	2.7e-49	100.0
WP_001308179.1\|3235415_3235688_+	hypothetical protein	Q1JS36	Enterobacteria_phage	1.4e-47	100.0
WP_000217670.1\|3235857_3236358_+	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_000557703.1\|3236421_3236646_+	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_001754915.1\|3236645_3236948_+	DUF5405 family protein	A0A0F7LCL4	Escherichia_phage	3.5e-47	100.0
WP_001113274.1\|3236947_3237172_+	TraR/DksA C4-type zinc finger protein	S4TRY6	Salmonella_phage	4.2e-34	98.6
WP_000027664.1\|3237168_3237444_+	DUF5405 family protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
WP_086353165.1\|3237433_3239719_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	97.9
WP_075326499.1\|3240060_3240285_+	hypothetical protein	Q2P9X3	Enterobacteria_phage	7.5e-23	86.9
WP_050939234.1\|3240552_3241581_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	3.9e-50	38.6
WP_075326501.1\|3241585_3243598_+	ATP-binding protein	A0A2H4J2R8	uncultured_Caudovirales_phage	5.8e-05	32.6
WP_086353166.1\|3243899_3244934_-\|portal	phage portal protein	M1SV64	Escherichia_phage	1.6e-200	98.8
WP_000156874.1\|3244933_3246706_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_086353167.1\|3246879_3247734_+\|capsid	GPO family capsid scaffolding protein	A0A0F7LA11	Escherichia_phage	1.7e-136	98.2
WP_086353168.1\|3247792_3248866_+\|capsid	phage major capsid protein, P2 family	Q94MI3	Enterobacteria_phage	2.8e-200	98.9
WP_086353169.1\|3248869_3249613_+\|terminase	terminase endonuclease subunit	Q858W5	Yersinia_virus	2.8e-122	96.8
WP_000988633.1\|3249712_3250222_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000846399.1\|3250221_3250425_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000123123.1\|3250428_3250710_+\|holin	phage holin family protein	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_001144101.1\|3250709_3251207_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_086353170.1\|3251221_3251647_+	protein lysA	U5N096	Enterobacteria_phage	5.5e-59	95.0
WP_086353171.1\|3251634_3252060_+\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	4.7e-66	97.2
WP_086353172.1\|3252167_3252635_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	3.3e-81	98.7
WP_021563760.1\|3252627_3253086_+	phage virion morphogenesis protein	O80313	Escherichia_phage	7.8e-43	62.4
WP_077727440.1\|3253082_3253838_+	hypothetical protein	NA	NA	NA	NA
WP_086353173.1\|3253915_3254551_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	5.9e-113	99.1
WP_000127164.1\|3254547_3254895_+	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	1.3e-58	100.0
WP_001121478.1\|3254899_3255808_+\|plate	baseplate assembly protein	Q858V6	Yersinia_virus	8.8e-163	100.0
WP_086353174.1\|3255800_3256331_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	3.9e-102	98.9
WP_086353175.1\|3256341_3259077_+\|tail	phage tail protein	Q858V4	Yersinia_virus	0.0e+00	81.4
WP_065275708.1\|3259080_3259608_+\|tail	tail fiber assembly protein	Q7Y4D3	Escherichia_virus	6.2e-92	96.0
WP_086353176.1\|3260938_3262129_+\|tail	phage tail sheath protein	Q858V1	Yersinia_virus	2.4e-224	99.2
WP_001251408.1\|3262141_3262660_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001031303.1\|3262716_3262992_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_000785970.1\|3263024_3263144_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_086353177.1\|3263136_3265584_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	0.0e+00	96.1
WP_000978890.1\|3265598_3266078_+\|tail	phage tail protein	O64315	Escherichia_phage	1.1e-84	99.4
WP_086353178.1\|3266077_3267241_+	phage late control D family protein	U5N3V4	Enterobacteria_phage	4.1e-205	99.2
WP_000468308.1\|3267322_3267541_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001076748.1\|3267777_3268680_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
WP_000591795.1\|3268860_3269823_+	6-phosphofructokinase	NA	NA	NA	NA
WP_000758732.1\|3270142_3271132_+	sulfate/thiosulfate ABC transporter substrate-binding protein Sbp	NA	NA	NA	NA
WP_001296622.1\|3271238_3271994_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001216325.1\|3272048_3272816_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_000802235.1\|3272923_3273523_-	YiiQ family protein	NA	NA	NA	NA
WP_000155252.1\|3273623_3274064_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000655986.1\|3274275_3274575_+	DUF406 domain-containing protein	NA	NA	NA	NA
3274425:3274442	attR	NA	NA	NA	NA
WP_000323555.1\|3274601_3275030_+	universal stress protein UspD	NA	NA	NA	NA
WP_000796342.1\|3275034_3275781_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_001250644.1\|3275877_3276888_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000136804.1\|3277058_3278567_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_000084268.1\|3278589_3279435_-	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_001296623.1\|3279859_3280105_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000872908.1\|3280189_3280675_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001305044.1\|3280767_3281694_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_001293344.1\|3281760_3283092_-	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_000208242.1\|3283101_3283632_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_000068834.1\|3283724_3284684_-	cell division protein FtsN	NA	NA	NA	NA
WP_000644908.1\|3284775_3285801_-	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA
WP_001296625.1\|3285956_3288155_-	primosomal protein N'	NA	NA	NA	NA
WP_000710769.1\|3288357_3288570_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_000702314.1\|3288630_3289239_-	YiiX family permuted papain-like enzyme	NA	NA	NA	NA
WP_000852812.1\|3289298_3289616_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_000197203.1\|3289892_3291053_+	cystathionine gamma-synthase	NA	NA	NA	NA
WP_000110759.1\|3291055_3293488_+	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA
WP_000105529.1\|3293451_3294582_-	hypothetical protein	NA	NA	NA	NA
WP_000694068.1\|3294714_3296268_+	bifunctional metallophosphatase/5'-nucleotidase	A0A0B5J7T1	Pandoravirus	3.5e-10	24.5
WP_000007515.1\|3296649_3297540_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_001296626.1\|3297868_3300049_+	catalase/peroxidase HPI	NA	NA	NA	NA
WP_001271242.1\|3300142_3301048_+	cystine transporter YijE	NA	NA	NA	NA
WP_000647862.1\|3301074_3301692_-	DUF1287 domain-containing protein	NA	NA	NA	NA
WP_170386723.1\|3302928_3303900_-\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1

DBSCAN-SWA_7

3874613 : 3974654

111

Enterobacteria_phage(39.06%)

tRNA,capsid,transposase,head,tail,holin,portal,integrase,terminase

attL 3867574:3867609|attR 3947961:3947996

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3867574:3867609	attL	NA	NA	NA	NA
WP_170386723.1\|3874613_3875585_-\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
WP_024008786.1\|3876415_3878068_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_000091596.1\|3878238_3879144_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001531305.1\|3879282_3880305_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_001531306.1\|3880441_3882733_-	phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase	NA	NA	NA	NA
WP_001385190.1\|3882986_3883481_-	DUF2501 domain-containing protein	NA	NA	NA	NA
WP_000799911.1\|3883529_3884267_-	DNA replication protein DnaC	V5UQI5	Shigella_phage	7.6e-64	50.8
WP_001298056.1\|3884269_3884809_-	primosomal protein DnaT	T1SA92	Salmonella_phage	3.8e-28	62.8
WP_000538188.1\|3884916_3885390_-	threonine/serine exporter	NA	NA	NA	NA
WP_001314410.1\|3885380_3886151_-	threonine/serine exporter ThrE family protein	NA	NA	NA	NA
WP_000936644.1\|3886770_3887496_+	response regulator transcription factor	NA	NA	NA	NA
WP_001311355.1\|3887453_3888131_+	DNA-binding transcriptional activator BglJ	NA	NA	NA	NA
WP_001531310.1\|3888168_3888957_-	siderophore-iron reductase FhuF	NA	NA	NA	NA
WP_001531311.1\|3889097_3889334_+	DUF1435 domain-containing protein	NA	NA	NA	NA
WP_001272297.1\|3889894_3890926_-	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA	NA	NA	NA
WP_000204031.1\|3891028_3891442_+	DNA polymerase III subunit psi	NA	NA	NA	NA
WP_001092452.1\|3891410_3891857_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_000870722.1\|3891871_3892549_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_001218277.1\|3892934_3894158_+\|integrase	site-specific integrase	A5LH57	Enterobacteria_phage	4.0e-235	98.5
WP_001159681.1\|3894340_3898168_+	SIR2 family protein	NA	NA	NA	NA
WP_000206808.1\|3898564_3899185_-	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	1.1e-111	90.8
WP_001242715.1\|3899184_3899547_-	phage protein	K7PH61	Enterobacteria_phage	7.5e-65	98.3
WP_000008242.1\|3899537_3900074_-	5'-deoxynucleotidase	K7PKJ9	Enterobacteria_phage	4.5e-98	97.8
WP_046960595.1\|3900201_3901026_-	DUF2303 family protein	U5P439	Shigella_phage	6.6e-149	99.3
WP_000135680.1\|3901091_3901454_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000848749.1\|3902122_3902797_-	LexA family transcriptional regulator	U5P0T5	Shigella_phage	6.0e-132	99.6
WP_000649477.1\|3902887_3903088_+	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	7.9e-32	100.0
WP_000521508.1\|3903131_3903683_+	hypothetical protein	A0A291AWW8	Escherichia_phage	4.5e-101	100.0
WP_001087323.1\|3903679_3904516_+	ash family protein	Q8SBF3	Shigella_phage	5.9e-137	91.7
WP_000933943.1\|3904508_3904745_+	hypothetical protein	A0A291AX25	Escherichia_phage	2.7e-39	98.7
WP_000061519.1\|3904741_3905560_+	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	4.7e-123	99.6
WP_001315196.1\|3905556_3906051_+	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	8.1e-86	97.5
WP_001315197.1\|3906050_3906713_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.1e-127	99.5
WP_000224252.1\|3906700_3907027_+	LexA family transcriptional regulator	K7PLX6	Enterobacteria_phage	2.7e-53	99.1
WP_000767123.1\|3907023_3907419_+	RusA family crossover junction endodeoxyribonuclease	Q8SBE7	Shigella_phage	5.7e-66	98.4
WP_001072670.1\|3907581_3908397_+	KilA-N domain-containing protein	U5P4K5	Shigella_phage	5.5e-148	98.9
WP_001519432.1\|3908404_3909394_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.3e-195	99.7
WP_001047103.1\|3909407_3910160_+	antitermination protein	Q8SBE4	Shigella_phage	3.4e-136	98.4
WP_122632654.1\|3910438_3910528_-	hypothetical protein	NA	NA	NA	NA
WP_000087755.1\|3910582_3910795_-	cold shock-like protein CspF	NA	NA	NA	NA
WP_000066486.1\|3911095_3911311_+	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	5.9e-25	75.0
WP_000839581.1\|3912063_3912279_+\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	7.9e-30	90.1
WP_000189906.1\|3912283_3912628_+	YdfR family protein	K7PGU6	Enterobacteria_phage	1.5e-33	85.7
WP_001315200.1\|3912593_3912866_-	hypothetical protein	NA	NA	NA	NA
WP_000992048.1\|3912971_3913505_+	lysozyme	K7PLY1	Enterobacteria_phage	1.5e-98	94.9
WP_001071779.1\|3913501_3913993_+	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_000066496.1\|3914361_3914574_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071528545.1\|3914584_3914773_+	cold-shock protein	NA	NA	NA	NA
WP_001443523.1\|3914920_3915076_+	hypothetical protein	NA	NA	NA	NA
WP_001019207.1\|3915248_3915422_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000548584.1\|3915717_3915924_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	9.9e-22	79.4
WP_032143631.1\|3916177_3916369_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	8.0e-26	96.8
WP_001519435.1\|3916796_3917303_+\|terminase	terminase small subunit	O64316	Escherichia_phage	3.3e-34	48.5
WP_086353190.1\|3917274_3919203_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.7e-259	65.7
WP_000259002.1\|3919186_3919393_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001306178.1\|3919389_3920982_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.9e-184	60.9
WP_001253998.1\|3920971_3922477_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
WP_000256840.1\|3922513_3922861_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_000522651.1\|3922918_3923947_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.7e-115	61.6
WP_000201530.1\|3923998_3924373_+	hypothetical protein	NA	NA	NA	NA
WP_001204545.1\|3924365_3924719_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	5.8e-38	65.0
WP_001007371.1\|3924730_3925309_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	92.2
WP_000683147.1\|3925305_3925701_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	99.2
WP_001306179.1\|3925708_3926449_+\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	7.8e-133	99.6
WP_000479209.1\|3926464_3926887_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.9e-59	82.9
WP_000459457.1\|3926868_3927303_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840201.1\|3927295_3929857_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	91.8
WP_000847347.1\|3929853_3930183_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.6e-58	99.1
WP_001152645.1\|3930182_3930881_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.6e-132	98.3
WP_000140691.1\|3930885_3931629_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.8e-144	93.5
WP_000090890.1\|3931565_3932198_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.0
WP_086353191.1\|3932258_3935738_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.3
WP_001228249.1\|3935805_3936405_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.5e-102	92.0
WP_086353192.1\|3936469_3938845_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	1.4e-167	69.3
WP_000654166.1\|3938844_3939126_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	3.1e-18	50.0
WP_061089098.1\|3939135_3940176_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	2.4e-124	67.3
WP_001306187.1\|3940218_3940512_+	hypothetical protein	NA	NA	NA	NA
WP_000086527.1\|3940739_3941330_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836769.1\|3941710_3941944_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	6.4e-33	88.3
WP_120795384.1\|3942012_3942126_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_001217539.1\|3942552_3942801_-	DinI-like family protein	A5LH55	Enterobacteria_phage	1.1e-38	100.0
WP_000202563.1\|3943020_3944607_+	peptide chain release factor 3	D0R0F5	Streptococcus_phage	2.4e-30	25.2
WP_001531357.1\|3944999_3945605_+	molecular chaperone OsmY	NA	NA	NA	NA
WP_000490275.1\|3945731_3945893_+	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
WP_001298490.1\|3946014_3947088_+	patatin family protein	NA	NA	NA	NA
WP_000563043.1\|3947084_3947864_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_001088370.1\|3947998_3948862_-	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
3947961:3947996	attR	NA	NA	NA	NA
WP_001143221.1\|3948833_3950384_-	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_001295412.1\|3950641_3951421_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_000477800.1\|3951498_3952821_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	1.5e-78	39.5
WP_000816460.1\|3952872_3954096_+	phosphopentomutase	NA	NA	NA	NA
WP_000224879.1\|3954152_3954872_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_001293116.1\|3955038_3956370_+	type II toxin-antitoxin system HipA family toxin YjjJ	NA	NA	NA	NA
WP_000105853.1\|3956370_3957387_-	lipoate--protein ligase LplA	NA	NA	NA	NA
WP_000124608.1\|3957414_3958059_-	YtjB family periplasmic protein	NA	NA	NA	NA
WP_001132966.1\|3958164_3959133_+	phosphoserine phosphatase	NA	NA	NA	NA
WP_086353193.1\|3959181_3960564_+	DNA repair protein RadA	NA	NA	NA	NA
WP_000093834.1\|3960584_3961817_+	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	2.1e-82	42.6
WP_000046754.1\|3961937_3963605_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	1.0e-39	27.7
WP_000409419.1\|3963811_3965749_+	murein transglycosylase	A0A1P8CWQ1	Bacillus_phage	4.0e-11	34.8
WP_000068677.1\|3965838_3966165_+	trp operon repressor	NA	NA	NA	NA
WP_001531361.1\|3966243_3966771_-	inosine/xanthosine triphosphatase	NA	NA	NA	NA
WP_000942350.1\|3966822_3967470_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB	NA	NA	NA	NA
WP_000371666.1\|3967466_3968336_-	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA
WP_000875487.1\|3968546_3969020_+	protein CreA	NA	NA	NA	NA
WP_061089099.1\|3969032_3969722_+	two-component system response regulator CreB	W8CYM9	Bacillus_phage	9.7e-29	34.8
WP_001219582.1\|3969721_3971146_+	two-component system sensor histidine kinase CreC	Q8QKV7	Ectocarpus_siliculosus_virus	3.2e-10	20.9
WP_000920358.1\|3971203_3972556_+	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_001194358.1\|3972615_3973332_-	two-component system response regulator ArcA	NA	NA	NA	NA
WP_001295754.1\|3973427_3973568_+	hypothetical protein	NA	NA	NA	NA
WP_001223200.1\|3973967_3974654_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_8

4238370 : 4350391

104

Enterobacteria_phage(35.19%)

transposase,tail,integrase,holin,portal,lysis,terminase

attL 4238976:4238992|attR 4360510:4360526

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000006240.1\|4238370_4238868_+\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
4238976:4238992	attL	NA	NA	NA	NA
WP_001545817.1\|4239087_4240827_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_000207551.1\|4240771_4241557_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001226176.1\|4241627_4242683_+	DNA polymerase IV	NA	NA	NA	NA
WP_001059897.1\|4242679_4243132_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001311432.1\|4243309_4244461_+	RNA ligase RtcB family protein	A0A222ZMP7	Mycobacterium_phage	6.6e-30	31.1
WP_000602123.1\|4244457_4245072_+	peptide chain release factor H	NA	NA	NA	NA
WP_001293022.1\|4245127_4246585_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001291991.1\|4246845_4247304_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_000189575.1\|4247395_4248640_+	esterase FrsA	NA	NA	NA	NA
WP_000174703.1\|4248697_4249099_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000749899.1\|4249137_4250193_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	3.5e-118	60.6
WP_001285288.1\|4250481_4251585_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893315.1\|4251596_4252850_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.0e-96	47.5
WP_061089092.1\|4253076_4254219_-\|integrase	site-specific integrase	U5P434	Shigella_phage	1.2e-220	99.5
WP_000206732.1\|4254445_4254751_-	hypothetical protein	U5P0J0	Shigella_phage	6.8e-51	100.0
WP_001242749.1\|4254750_4255113_-	phage protein	U5P092	Shigella_phage	2.1e-67	100.0
WP_000008200.1\|4255103_4255640_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	4.3e-101	100.0
WP_000081287.1\|4255767_4256592_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000135682.1\|4256657_4257020_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_001312635.1\|4257513_4258011_+	hypothetical protein	NA	NA	NA	NA
WP_001020634.1\|4258333_4259026_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.0e-126	100.0
WP_001191674.1\|4259123_4259384_+	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
WP_086353198.1\|4259376_4259928_+	hypothetical protein	S5FXP0	Shigella_phage	5.8e-101	98.9
WP_001250269.1\|4260103_4260283_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_061089069.1\|4260272_4261214_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.5e-138	92.3
WP_072161726.1\|4261210_4261705_+	PerC family transcriptional regulator	U5P0U0	Shigella_phage	2.8e-86	96.3
WP_001305610.1\|4261704_4262358_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	3.3e-127	99.1
WP_000210173.1\|4262354_4262681_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.0e-53	99.1
WP_000767111.1\|4262677_4263067_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	3.5e-68	99.2
WP_001061449.1\|4263086_4263896_+	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	1.2e-150	99.3
WP_061089070.1\|4263903_4264893_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.0e-192	98.5
WP_001504953.1\|4264910_4265282_+	phage antitermination Q family protein	Q777W5	Enterobacteria_phage	6.1e-54	82.5
WP_032083250.1\|4265454_4266906_-	AAA family ATPase	NA	NA	NA	NA
WP_001355891.1\|4267318_4267513_+	hypothetical protein	Q8SBE3	Shigella_phage	1.8e-28	100.0
WP_000799656.1\|4267662_4268715_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.7e-208	100.0
WP_000839596.1\|4268782_4268998_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135250.1\|4268997_4269495_+	lysozyme RrrD	A0A291AWW2	Escherichia_phage	4.5e-92	100.0
WP_001341210.1\|4269491_4269959_+\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	7.7e-78	100.0
WP_061089071.1\|4269946_4270099_+	hypothetical protein	A0A291AWZ2	Escherichia_phage	4.7e-21	98.0
WP_000349509.1\|4270774_4271266_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.3e-72	87.2
WP_061089072.1\|4271265_4273368_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	99.3
WP_001072975.1\|4273364_4273577_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_077873861.1\|4273504_4275085_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	1.6e-289	99.8
WP_061089075.1\|4277143_4277467_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	2.5e-51	99.1
WP_001283153.1\|4277459_4277735_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_000677120.1\|4277746_4278337_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
WP_152024025.1\|4278333_4278735_+\|tail	phage tail protein	A5LH34	Enterobacteria_phage	1.3e-70	97.7
WP_000211128.1\|4278745_4279489_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.6e-130	98.0
WP_001298500.1\|4279549_4279936_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	3.3e-66	100.0
WP_001161009.1\|4279944_4280274_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_061089077.1\|4280245_4283302_+\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	0.0e+00	97.6
WP_000447253.1\|4283301_4283631_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_001152385.1\|4283640_4284339_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	6.0e-135	100.0
WP_032152077.1\|4284343_4285087_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.4e-152	99.2
WP_072275098.1\|4284984_4285632_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.0e-113	98.1
WP_061089079.1\|4285692_4289091_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	90.3
WP_061089080.1\|4289158_4289758_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	8.3e-101	90.5
WP_061089081.1\|4289822_4292180_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	1.0e-117	50.3
WP_001204892.1\|4292179_4292449_+	hypothetical protein	NA	NA	NA	NA
WP_061089082.1\|4292461_4293145_+\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	4.4e-58	61.7
WP_061089083.1\|4293155_4293443_+	hypothetical protein	NA	NA	NA	NA
WP_061089084.1\|4294244_4296023_-	hypothetical protein	NA	NA	NA	NA
WP_061089087.1\|4297007_4297592_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000884345.1\|4297612_4298056_-	acetyltransferase	NA	NA	NA	NA
WP_000671528.1\|4299747_4300995_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_000229741.1\|4300984_4302622_-	SAM-dependent DNA methyltransferase	A0A2H4PQP4	Staphylococcus_phage	1.0e-23	28.7
WP_000673070.1\|4302615_4305714_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_001295795.1\|4305997_4306780_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_000365807.1\|4306766_4307687_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_000146240.1\|4309604_4309790_+	hypothetical protein	NA	NA	NA	NA
WP_001019923.1\|4310004_4310619_+	YagU family protein	NA	NA	NA	NA
WP_001295797.1\|4310867_4311197_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001295798.1\|4311503_4312214_-	fimbrial chaperone EcpE	NA	NA	NA	NA
WP_001265646.1\|4312182_4313826_-	fimbrial adhesin EcpD	NA	NA	NA	NA
WP_001131109.1\|4313815_4316341_-	fimbrial usher EcpC	NA	NA	NA	NA
WP_000716404.1\|4316366_4317035_-	fimbrial chaperone EcpB	NA	NA	NA	NA
WP_000730982.1\|4317091_4317679_-	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA
WP_000389022.1\|4317753_4318296_-	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA
WP_000866436.1\|4319379_4319520_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_000803998.1\|4319519_4319783_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_000662258.1\|4320147_4320249_-	hypothetical protein	NA	NA	NA	NA
WP_000182343.1\|4320721_4321864_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_000860035.1\|4322036_4322957_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001524125.1\|4323113_4324040_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000910713.1\|4324239_4325133_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001172283.1\|4325163_4326153_-	aldo/keto reductase	NA	NA	NA	NA
WP_001174452.1\|4326179_4327031_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-47	40.7
WP_000092553.1\|4327596_4331844_+	intimin-like adhesin FdeC	NA	NA	NA	NA
WP_000620995.1\|4331968_4332826_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001295799.1\|4333073_4333943_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.1e-53	42.5
WP_001295800.1\|4334102_4334696_-	reactive chlorine species resistance protein RclC	NA	NA	NA	NA
WP_000474088.1\|4334707_4334944_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001046304.1\|4335828_4337154_-	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-113	47.8
WP_001295801.1\|4337380_4338235_+	DNA-binding transcriptional regulator RclR	NA	NA	NA	NA
WP_001102123.1\|4338760_4339480_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_001295802.1\|4339490_4340918_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_001295803.1\|4340910_4341606_+	lactate utilization protein C	NA	NA	NA	NA
WP_001005267.1\|4341848_4342517_-	membrane protein	NA	NA	NA	NA
WP_072017408.1\|4342700_4343894_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_001213045.1\|4345033_4345795_-	hypothetical protein	NA	NA	NA	NA
WP_001295804.1\|4345948_4346743_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001295805.1\|4347072_4347636_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	6.0e-53	53.3
WP_001159129.1\|4348720_4350391_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	8.9e-60	30.9
4360510:4360526	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4566108 : 4621054

Enterobacteria_phage(42.31%)

tRNA,lysis,capsid,protease,head,tail,integrase,holin,portal,terminase

attL 4561096:4561112|attR 4591203:4591219

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4561096:4561112	attL	NA	NA	NA	NA
WP_000912352.1\|4566108_4567494_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143517.1\|4567529_4568051_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190282.1\|4568158_4568371_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729155.1\|4568372_4569239_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_001298992.1\|4569601_4570765_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.0e-200	86.6
WP_000206813.1\|4570991_4571297_-	hypothetical protein	U5P0J0	Shigella_phage	1.4e-48	95.0
WP_001242707.1\|4571296_4571659_-	phage protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
WP_000008237.1\|4571649_4572186_-	5'-deoxynucleotidase	K7PKJ9	Enterobacteria_phage	1.8e-99	97.8
WP_086353202.1\|4572313_4573138_-	DUF2303 family protein	U5P439	Shigella_phage	3.3e-148	98.9
WP_000135682.1\|4573203_4573566_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_000559922.1\|4574036_4574552_+	hypothetical protein	NA	NA	NA	NA
WP_000167381.1\|4574936_4576013_-	AAA family ATPase	E7C9Q8	Salmonella_phage	3.4e-121	59.9
WP_001535858.1\|4576183_4576888_-	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	3.4e-69	59.9
WP_001535859.1\|4576994_4577258_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	4.2e-09	50.0
WP_086353204.1\|4577286_4577838_+	protein YmfL	S5FXP0	Shigella_phage	7.6e-101	98.4
WP_001250269.1\|4578013_4578193_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104986.1\|4578182_4579124_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.9e-152	99.0
WP_001573323.1\|4579120_4579615_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	6.2e-86	97.5
WP_000210176.1\|4579614_4579941_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.3e-52	97.2
WP_000767127.1\|4579937_4580327_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_001061427.1\|4580346_4581189_+	KilA-N domain-containing protein	S5MC03	Escherichia_phage	1.1e-138	91.5
WP_001535863.1\|4581196_4582186_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.4e-193	98.8
WP_001535864.1\|4582199_4582952_+	antitermination protein	Q8SBE4	Shigella_phage	2.9e-135	98.0
WP_000966854.1\|4583106_4583637_+	hypothetical protein	NA	NA	NA	NA
WP_001317671.1\|4583818_4584013_+	hypothetical protein	Q8SBE3	Shigella_phage	5.7e-27	95.3
WP_000799651.1\|4584162_4585224_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.7e-203	97.7
WP_000502162.1\|4586103_4586295_+	hypothetical protein	NA	NA	NA	NA
WP_000284486.1\|4586317_4586533_+\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	1.0e-32	95.8
WP_000250557.1\|4586537_4586882_+	YdfR family protein	K7PGU6	Enterobacteria_phage	3.5e-35	90.5
WP_000370551.1\|4586847_4587120_-	hypothetical protein	NA	NA	NA	NA
WP_000992182.1\|4587225_4587759_+	lysozyme	K7PLY1	Enterobacteria_phage	2.6e-98	94.4
WP_001228695.1\|4587975_4588158_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738425.1\|4588248_4588542_-	increased serum survival lipoprotein Iss	C6ZCX3	Enterobacteria_phage	1.6e-44	91.8
WP_000830178.1\|4589022_4589349_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000881608.1\|4589555_4589738_+	hypothetical protein	NA	NA	NA	NA
WP_000453587.1\|4590302_4590848_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_016245259.1\|4590822_4592748_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
4591203:4591219	attR	NA	NA	NA	NA
WP_000198149.1\|4592744_4592951_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_086353205.1\|4592947_4594549_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.9e-309	99.1
WP_086353206.1\|4594529_4595849_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	6.2e-234	98.6
WP_001299443.1\|4595858_4596191_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
WP_022645311.1\|4596246_4597272_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.0e-191	99.4
WP_086353207.1\|4597313_4597709_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	4.1e-56	92.4
WP_000752994.1\|4597720_4598074_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_001595432.1\|4598085_4598664_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
WP_000683129.1\|4598660_4599056_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
WP_024257430.1\|4599063_4599804_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.8e-129	97.6
WP_000479193.1\|4599819_4600242_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-60	85.7
WP_000459457.1\|4600223_4600658_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_086353208.1\|4600650_4603230_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	99.8
WP_000847379.1\|4603226_4603556_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_086353209.1\|4603555_4604254_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	7.6e-130	96.6
WP_000194780.1\|4604259_4605003_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_000090891.1\|4604939_4605572_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_086353210.1\|4605632_4609115_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.7
WP_001230364.1\|4609181_4609781_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	8.2e-109	98.0
WP_086353223.1\|4609845_4613205_+\|tail	prophage tail fiber N-terminal domain-containing protein	X2KTY7	Enterobacteria_phage	1.8e-11	35.5
WP_001598023.1\|4613204_4613789_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	94.3
WP_137556695.1\|4613843_4614512_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001226375.1\|4615056_4616541_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_086353211.1\|4616727_4617681_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001111238.1\|4618789_4619146_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.3e-53	67.5
WP_152024026.1\|4619200_4619869_-	methyltransferase	NA	NA	NA	NA
WP_001201838.1\|4620100_4621054_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021209

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021207

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection