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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020608 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd4, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP020610 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd6, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP020606 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd2, complete sequence 0 crisprs csa3 0 0 1 0
NZ_CP020609 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP020605 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP020604 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 chromosome, complete genome 1 crisprs cas3,csa3,DinG,DEDDh 0 0 161 0
NZ_CP020611 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd7, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP020607 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd3, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP020604
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020604_1 1351342-1351436 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 61312 83 Lactococcus_phage(87.69%) terminase,tRNA,portal,head,capsid,integrase,protease,holin attL 43422:43450|attR 58572:58600
DBSCAN-SWA_2 67089 : 69996 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_3 84836 : 88170 2 Helicobacter_phage(50.0%) NA NA
DBSCAN-SWA_4 91231 : 96334 4 Cronobacter_phage(50.0%) protease NA
DBSCAN-SWA_5 106261 : 111802 6 Moumouvirus(25.0%) NA NA
DBSCAN-SWA_6 120572 : 122379 2 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_7 125702 : 126272 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_8 130619 : 138952 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_9 148738 : 194586 38 Bacillus_phage(21.05%) transposase,tRNA,protease,integrase attL 175148:175207|attR 193695:193806
DBSCAN-SWA_10 199323 : 201687 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_11 215285 : 215885 1 Agrobacterium_phage(100.0%) protease NA
DBSCAN-SWA_12 219059 : 225435 3 Paramecium_bursaria_Chlorella_virus(50.0%) transposase NA
DBSCAN-SWA_13 242813 : 275288 26 Bacillus_phage(40.0%) transposase NA
DBSCAN-SWA_14 284912 : 286301 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_15 291384 : 295933 4 Acanthocystis_turfacea_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_16 300128 : 301010 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_17 316830 : 319665 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_18 324935 : 325667 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_19 332956 : 333877 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_20 337094 : 344228 9 Streptococcus_phage(40.0%) tRNA NA
DBSCAN-SWA_21 347340 : 351219 4 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_22 354974 : 357143 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_23 366718 : 370997 3 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_24 376955 : 379549 2 Shigella_phage(50.0%) transposase NA
DBSCAN-SWA_25 384507 : 386670 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_26 394203 : 394917 1 Serratia_phage(100.0%) NA NA
DBSCAN-SWA_27 400335 : 404516 4 Yellowstone_lake_mimivirus(50.0%) NA NA
DBSCAN-SWA_28 409810 : 411898 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_29 415305 : 419155 4 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_30 439576 : 440308 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_31 452592 : 459825 7 Bodo_saltans_virus(25.0%) NA NA
DBSCAN-SWA_32 466409 : 469609 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_33 474018 : 477563 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_34 489324 : 489765 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_35 496115 : 511744 16 unidentified_phage(33.33%) transposase NA
DBSCAN-SWA_36 518016 : 519840 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_37 529244 : 532884 4 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_38 539138 : 552922 11 Enterococcus_phage(25.0%) NA NA
DBSCAN-SWA_39 561580 : 579436 18 Staphylococcus_phage(30.0%) NA NA
DBSCAN-SWA_40 584723 : 587854 3 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_41 591374 : 592736 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_42 597153 : 604717 10 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_43 609401 : 615434 6 Bacillus_virus(60.0%) NA NA
DBSCAN-SWA_44 621391 : 628292 4 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_45 637816 : 643407 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_46 655281 : 671260 19 Streptococcus_phage(25.0%) tRNA,protease NA
DBSCAN-SWA_47 674261 : 674900 1 Lactobacillus_virus(100.0%) NA NA
DBSCAN-SWA_48 679704 : 680991 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_49 684067 : 684928 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_50 698148 : 699531 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_51 706998 : 766995 50 unidentified_phage(22.22%) transposase,tRNA,integrase attL 704106:704122|attR 773415:773431
DBSCAN-SWA_52 774856 : 776909 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_53 782257 : 783369 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_54 787211 : 788234 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_55 792610 : 800106 5 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_56 805406 : 806495 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_57 810076 : 819187 10 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_58 835136 : 835913 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_59 844830 : 845778 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_60 855306 : 858556 4 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_61 869734 : 873911 2 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_62 881485 : 885637 4 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_63 902537 : 903485 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_64 909290 : 912598 2 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_65 918583 : 918985 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_66 923257 : 935262 15 Streptococcus_phage(28.57%) NA NA
DBSCAN-SWA_67 939531 : 940758 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_68 962638 : 965073 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_69 973409 : 974141 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_70 981303 : 982845 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_71 1017820 : 1043394 22 Synechococcus_phage(27.27%) transposase NA
DBSCAN-SWA_72 1047892 : 1052043 6 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_73 1057921 : 1062619 5 Hokovirus(50.0%) NA NA
DBSCAN-SWA_74 1067196 : 1070926 4 unidentified_phage(50.0%) tRNA NA
DBSCAN-SWA_75 1082973 : 1083285 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_76 1102367 : 1106192 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_77 1109199 : 1117772 9 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_78 1129122 : 1131523 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_79 1148103 : 1198617 62 Lactococcus_phage(89.09%) terminase,portal,head,capsid,tail,integrase,protease,holin attL 1143477:1143494|attR 1210310:1210327
DBSCAN-SWA_80 1207062 : 1214834 7 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_81 1228331 : 1230472 2 Ectocarpus_siliculosus_virus(50.0%) NA NA
DBSCAN-SWA_82 1249843 : 1250955 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_83 1255673 : 1260264 4 Acanthocystis_turfacea_Chlorella_virus(33.33%) transposase NA
DBSCAN-SWA_84 1268286 : 1283681 15 Planktothrix_phage(25.0%) tRNA NA
DBSCAN-SWA_85 1290930 : 1292352 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_86 1299756 : 1302261 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_87 1311463 : 1314076 3 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_88 1321744 : 1325872 3 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_89 1334367 : 1339556 4 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_90 1351554 : 1372054 15 uncultured_virus(12.5%) NA NA
DBSCAN-SWA_91 1376175 : 1379172 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_92 1384228 : 1385023 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_93 1389395 : 1392218 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_94 1397265 : 1407843 11 Mycobacterium_phage(25.0%) tRNA NA
DBSCAN-SWA_95 1412604 : 1416192 5 Planktothrix_phage(66.67%) NA NA
DBSCAN-SWA_96 1422025 : 1423372 1 Bandra_megavirus(100.0%) tRNA NA
DBSCAN-SWA_97 1429791 : 1437779 8 Tupanvirus(25.0%) tRNA NA
DBSCAN-SWA_98 1444260 : 1460745 17 Indivirus(25.0%) transposase NA
DBSCAN-SWA_99 1473749 : 1474949 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_100 1479666 : 1482647 2 Clostridium_phage(50.0%) transposase NA
DBSCAN-SWA_101 1490903 : 1492844 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_102 1509139 : 1528290 23 Lactococcus_phage(72.22%) transposase,tRNA,protease,integrase attL 1515021:1515041|attR 1523986:1524006
DBSCAN-SWA_103 1535501 : 1540193 4 Streptococcus_phage(66.67%) tRNA NA
DBSCAN-SWA_104 1547485 : 1548742 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_105 1552398 : 1556427 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_106 1564727 : 1568321 3 Lactobacillus_phage(33.33%) NA NA
DBSCAN-SWA_107 1572945 : 1582264 10 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_108 1590932 : 1595163 4 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_109 1600394 : 1600841 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_110 1612872 : 1614567 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_111 1617618 : 1620723 1 Gordonia_phage(100.0%) NA NA
DBSCAN-SWA_112 1625751 : 1627455 1 Ostreococcus_lucimarinus_virus(100.0%) NA NA
DBSCAN-SWA_113 1634005 : 1637118 3 Salinivibrio_phage(50.0%) NA NA
DBSCAN-SWA_114 1644303 : 1645251 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_115 1670371 : 1672189 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_116 1678316 : 1679054 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_117 1682997 : 1747407 65 Lactococcus_phage(81.63%) terminase,tRNA,portal,transposase,capsid,tail,protease,holin NA
DBSCAN-SWA_118 1766383 : 1768874 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_119 1778138 : 1780781 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_120 1784304 : 1785846 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_121 1797449 : 1801034 3 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_122 1804054 : 1804555 1 Streptococcus_virus(100.0%) NA NA
DBSCAN-SWA_123 1807946 : 1826778 20 Streptococcus_virus(14.29%) NA NA
DBSCAN-SWA_124 1831192 : 1832704 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_125 1837074 : 1842930 5 Catovirus(50.0%) NA NA
DBSCAN-SWA_126 1856745 : 1866942 8 Lactococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_127 1878465 : 1884143 5 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_128 1888028 : 1889691 2 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_129 1897314 : 1898457 1 Aurantimonas_phage(100.0%) NA NA
DBSCAN-SWA_130 1901854 : 1945159 49 Lactococcus_phage(81.25%) terminase,tRNA,bacteriocin,integrase,protease attL 1930339:1930366|attR 1945268:1945295
DBSCAN-SWA_131 1949331 : 2002518 51 Bacillus_phage(30.0%) transposase,tRNA,bacteriocin,protease NA
DBSCAN-SWA_132 2006973 : 2010945 4 Chrysochromulina_ericina_virus(50.0%) NA NA
DBSCAN-SWA_133 2015266 : 2065293 51 Bacillus_phage(36.36%) transposase,tRNA,bacteriocin,protease NA
DBSCAN-SWA_134 2083323 : 2084088 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_135 2087619 : 2094763 6 Clostridium_phage(33.33%) transposase NA
DBSCAN-SWA_136 2099784 : 2102254 5 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_137 2105373 : 2109978 4 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_138 2122223 : 2125696 3 Lactococcus_phage(50.0%) tRNA,integrase attL 2113804:2113818|attR 2128908:2128922
DBSCAN-SWA_139 2141673 : 2141871 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_140 2148840 : 2150793 2 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_141 2166247 : 2170450 6 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_142 2173530 : 2177064 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_143 2181556 : 2191940 10 Klosneuvirus(33.33%) holin NA
DBSCAN-SWA_144 2201892 : 2202552 1 Tokyovirus(100.0%) NA NA
DBSCAN-SWA_145 2216829 : 2230181 11 Staphylococcus_phage(40.0%) NA NA
DBSCAN-SWA_146 2235414 : 2246803 11 Enterococcus_phage(28.57%) NA NA
DBSCAN-SWA_147 2258583 : 2260266 1 Brochothrix_phage(100.0%) NA NA
DBSCAN-SWA_148 2266631 : 2267372 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_149 2271555 : 2275328 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_150 2278344 : 2282064 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_151 2290476 : 2296653 7 Planktothrix_phage(66.67%) NA NA
DBSCAN-SWA_152 2301780 : 2306717 6 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_153 2318152 : 2329150 8 Planktothrix_phage(28.57%) NA NA
DBSCAN-SWA_154 2340336 : 2346412 5 Lactobacillus_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_155 2353741 : 2355145 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_156 2359204 : 2360464 1 Serratia_phage(100.0%) tRNA NA
DBSCAN-SWA_157 2364567 : 2376698 14 Streptococcus_phage(40.0%) tRNA NA
DBSCAN-SWA_158 2381452 : 2386318 3 Bacillus_thuringiensis_phage(50.0%) NA NA
DBSCAN-SWA_159 2391329 : 2398193 5 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_160 2411222 : 2411888 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_161 2416410 : 2428051 22 Lactococcus_phage(100.0%) integrase attL 2411612:2411625|attR 2418191:2418204
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP020606
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 99 : 8878 8 Streptococcus_phage(42.86%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage