CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021180	Escherichia coli strain 81009 plasmid pEC-81009, complete sequence	0 crisprs	RT	0	0	1	0
NZ_CP021179	Escherichia coli strain 81009 chromosome, complete genome	4 crisprs	c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT	0	4	10	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18029 : 66571

Escherichia_phage(50.0%)

transposase,integrase

attL 4231:4250|attR 58452:58471

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4231:4250	attL	NA	NA	NA	NA
WP_001189113.1\|18029_19538_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.2e-44	31.8
WP_000839179.1\|20039_20444_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
WP_000612626.1\|20440_20788_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001310017.1\|21867_22890_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	3.2e-201	99.7
WP_001323403.1\|22889_23669_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_001067858.1\|25057_25762_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001389366.1\|26727_27201_+	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000503573.1\|27331_28120_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_000679427.1\|28325_28673_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|28666_29506_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376616.1\|29633_29837_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|29992_31198_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|31208_31514_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|31740_32505_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001137892.1\|32997_33582_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|33581_34820_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|34816_35722_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|35843_36548_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001043260.1\|37092_37908_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_001082319.1\|37968_38772_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480972.1\|38771_39608_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_042005022.1\|39661_39898_+	hypothetical protein	NA	NA	NA	NA
WP_031606906.1\|39929_40556_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000804064.1\|40661_41861_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_001067858.1\|42277_42982_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001298664.1\|43253_45224_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_001322642.1\|46466_46739_+	adhesin biosynthesis transcription regulatory family protein	NA	NA	NA	NA
WP_001072358.1\|47585_48755_-	hypothetical protein	NA	NA	NA	NA
WP_001309252.1\|49121_49310_+	hypothetical protein	NA	NA	NA	NA
WP_001066941.1\|49430_50171_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	1.6e-24	57.6
WP_000361610.1\|50455_51433_-	replication initiation protein	J9Q7H0	Salmonella_phage	1.4e-100	59.2
WP_001617898.1\|52218_52950_+	hypothetical protein	NA	NA	NA	NA
WP_000081352.1\|54775_55708_-	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_001373486.1\|55694_57098_-	S-methylmethionine permease	NA	NA	NA	NA
WP_012372828.1\|57305_58322_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.9e-186	99.4
WP_001513659.1\|58549_58867_+	hypothetical protein	NA	NA	NA	NA
58452:58471	attR	NA	NA	NA	NA
WP_001513660.1\|59153_59513_-	hypothetical protein	A0A077SLM1	Escherichia_phage	5.0e-45	98.9
WP_001513661.1\|59540_59720_-	hypothetical protein	Q71TH5	Escherichia_phage	3.5e-23	96.6
WP_001216034.1\|59724_60105_-	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
WP_001190712.1\|60104_60326_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_001617892.1\|60508_62065_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.2e-104	42.7
WP_023142242.1\|62061_63333_+	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	1.5e-11	28.0
WP_001553854.1\|63454_66571_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	3.7e-27	24.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021179

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021179_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021179_1

2909013-2909136

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021179_1

>merge|NZ_CP021179|1|2909013-2909136|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP021179|1|1|2909013-2909136|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021179.1\|WP_001295403.1\|2898465_2899878_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP021179.1\|WP_001174939.1\|2910747_2912121_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP021179.1\|WP_000190985.1\|2916708_2917734_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP021179.1\|WP_000701057.1\|2918287_2919457_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP021179.1\|WP_000212681.1\|2908571_2908877_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP021179.1\|WP_001296102.1\|2903861_2904500_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP021179.1\|WP_000102278.1\|2918032_2918122_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP021179.1\|WP_000007273.1\|2919602_2920184_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP021179.1\|WP_001070015.1\|2905228_2906014_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP021179.1\|WP_001070248.1\|2901099_2901726_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP021179.1\|WP_000587585.1\|2906017_2906830_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP021179.1\|WP_000528342.1\|2900434_2900644_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP021179.1\|WP_000493947.1\|2912335_2912977_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP021179.1\|WP_001296101.1\|2904563_2905232_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP021179.1\|WP_001182336.1\|2914455_2915667_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP021179.1\|WP_000098896.1\|2913016_2914165_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP021179.1\|WP_001273524.1\|2901746_2903849_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP021179.1\|WP_000848170.1\|2906841_2908446_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP021179.1\|WP_000534260.1\|2909450_2910707_+\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP021179.1\|WP_000269498.1\|2915779_2916712_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948

Protein	Function_ID	Function_description	E-value
NZ_CP021179.1\|WP_001295403.1\|2898465_2899878_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP021179.1\|WP_001174939.1\|2910747_2912121_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP021179.1\|WP_000190985.1\|2916708_2917734_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP021179.1\|WP_000701057.1\|2918287_2919457_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.86098e-98
NZ_CP021179.1\|WP_000212681.1\|2908571_2908877_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	7.08279e-64
NZ_CP021179.1\|WP_001296102.1\|2903861_2904500_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	5.79235e-121
NZ_CP021179.1\|WP_000007273.1\|2919602_2920184_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.68395e-137
NZ_CP021179.1\|WP_001070015.1\|2905228_2906014_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.53331e-162
NZ_CP021179.1\|WP_001070248.1\|2901099_2901726_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	4.70639e-138
NZ_CP021179.1\|WP_000587585.1\|2906017_2906830_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.89827e-172
NZ_CP021179.1\|WP_000528342.1\|2900434_2900644_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP021179.1\|WP_000493947.1\|2912335_2912977_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP021179.1\|WP_001296101.1\|2904563_2905232_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.44535e-77
NZ_CP021179.1\|WP_001182336.1\|2914455_2915667_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP021179.1\|WP_000098896.1\|2913016_2914165_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP021179.1\|WP_001273524.1\|2901746_2903849_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP021179.1\|WP_000848170.1\|2906841_2908446_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP021179.1\|WP_000534260.1\|2909450_2910707_+\|AIDA-repeat-containing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP021179.1\|WP_000269498.1\|2915779_2916712_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0

>NZ_CP021179.1|WP_000212681.1|2908571_2908877_-|monooxygenase
MATLLQLHFSFNGPFGDTMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNVPLSQINQAKLA
>NZ_CP021179.1|WP_000848170.1|2906841_2908446_-|FAD-NAD(P)-binding-protein
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFDQADEAGIGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLNLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVTFHRDNANEKLNITLMSRTGILPEADFYCPIPYEPLHIITDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEENLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPNVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGITACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP021179.1|WP_000587585.1|2906017_2906830_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERLFCSQFVRSDDHARLGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGARARVAVTGNSSRISSAGDSGRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGCAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP021179.1|WP_001070015.1|2905228_2906014_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHSERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLDRAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP021179.1|WP_001296101.1|2904563_2905232_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGVCPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP021179.1|WP_001296102.1|2903861_2904500_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAKVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP021179.1|WP_001273524.1|2901746_2903849_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP021179.1|WP_001070248.1|2901099_2901726_+|ferredoxin-like-protein
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKESQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP021179.1|WP_000528342.1|2900434_2900644_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP021179.1|WP_001295403.1|2898465_2899878_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP021179.1|WP_000534260.1|2909450_2910707_+|AIDA-repeat-containing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEACNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFGIGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP021179.1|WP_001174939.1|2910747_2912121_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP021179.1|WP_000493947.1|2912335_2912977_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP021179.1|WP_000098896.1|2913016_2914165_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP021179.1|WP_001182336.1|2914455_2915667_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP021179.1|WP_000269498.1|2915779_2916712_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALKLENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP021179.1|WP_000190985.1|2916708_2917734_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP021179.1|WP_000102278.1|2918032_2918122_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP021179.1|WP_000701057.1|2918287_2919457_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHVTPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAIVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP021179.1|WP_000007273.1|2919602_2920184_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKPLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP021179_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021179_2

3588720-3588811

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021179_2

>merge|NZ_CP021179|2|3588720-3588811|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP021179|2|2|3588720-3588811|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021179.1\|WP_001001161.1\|3586161_3586752_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP021179.1\|WP_001230247.1\|3596514_3597687_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP021179.1\|WP_000024569.1\|3592812_3593118_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP021179.1\|WP_000420625.1\|3591892_3592813_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP021179.1\|WP_001044302.1\|3590116_3591358_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP021179.1\|WP_001120112.1\|3597816_3598509_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP021179.1\|WP_001295946.1\|3583162_3584254_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP021179.1\|WP_001295943.1\|3587277_3588606_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP021179.1\|WP_001143120.1\|3589851_3590079_+\|YccJ-family-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP021179.1\|WP_000209903.1\|3593372_3593972_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP021179.1\|WP_001028098.1\|3586762_3587257_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP021179.1\|WP_001126780.1\|3584957_3585344_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP021179.1\|WP_001264949.1\|3598481_3599510_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP021179.1\|WP_001295944.1\|3585351_3586152_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP021179.1\|WP_001063148.1\|3593968_3596515_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP021179.1\|WP_000191701.1\|3582236_3582875_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP021179.1\|WP_012896765.1\|3584253_3584946_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP021179.1\|WP_000979522.1\|3577970_3578180_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021179.1\|WP_001295947.1\|3578234_3582197_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP021179.1\|WP_001151437.1\|3589234_3589831_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647

Protein	Function_ID	Function_description	E-value
NZ_CP021179.1\|WP_001001161.1\|3586161_3586752_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	6.42763e-128
NZ_CP021179.1\|WP_001230247.1\|3596514_3597687_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP021179.1\|WP_000024569.1\|3592812_3593118_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	7.6018e-65
NZ_CP021179.1\|WP_000420625.1\|3591892_3592813_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP021179.1\|WP_001044302.1\|3590116_3591358_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP021179.1\|WP_001295946.1\|3583162_3584254_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP021179.1\|WP_001295943.1\|3587277_3588606_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP021179.1\|WP_001143120.1\|3589851_3590079_+\|YccJ-family-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP021179.1\|WP_000209903.1\|3593372_3593972_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.77311e-84
NZ_CP021179.1\|WP_001028098.1\|3586762_3587257_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.8278e-106
NZ_CP021179.1\|WP_001126780.1\|3584957_3585344_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP021179.1\|WP_001264949.1\|3598481_3599510_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	6.52362e-177
NZ_CP021179.1\|WP_001295944.1\|3585351_3586152_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.24575e-139
NZ_CP021179.1\|WP_001063148.1\|3593968_3596515_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP021179.1\|WP_000191701.1\|3582236_3582875_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP021179.1\|WP_012896765.1\|3584253_3584946_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	6.11512e-169
NZ_CP021179.1\|WP_001120112.1\|3597816_3598509_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP021179.1\|WP_001295947.1\|3578234_3582197_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP021179.1\|WP_001151437.1\|3589234_3589831_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133

>NZ_CP021179.1|WP_001295943.1|3587277_3588606_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGITTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNSVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQKP
>NZ_CP021179.1|WP_001028098.1|3586762_3587257_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEKALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP021179.1|WP_001001161.1|3586161_3586752_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWREPPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSDLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP021179.1|WP_001295944.1|3585351_3586152_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLDQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINTHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP021179.1|WP_001126780.1|3584957_3585344_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP021179.1|WP_012896765.1|3584253_3584946_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSSTSFARIA
>NZ_CP021179.1|WP_001295946.1|3583162_3584254_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVANVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP021179.1|WP_000191701.1|3582236_3582875_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP021179.1|WP_001295947.1|3578234_3582197_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDNALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP021179.1|WP_000979522.1|3577970_3578180_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP021179.1|WP_001151437.1|3589234_3589831_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP021179.1|WP_001143120.1|3589851_3590079_+|YccJ-family-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP021179.1|WP_001044302.1|3590116_3591358_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYKLLEQIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTERTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDRVLNEAVK
>NZ_CP021179.1|WP_000420625.1|3591892_3592813_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP021179.1|WP_000024569.1|3592812_3593118_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPSEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP021179.1|WP_000209903.1|3593372_3593972_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNGLENSIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLDLLSHLHFSLGEGTVPARRIDGLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDYQKR
>NZ_CP021179.1|WP_001063148.1|3593968_3596515_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFISPQDASARGIRHGDVVRVFNVRGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP021179.1|WP_001230247.1|3596514_3597687_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP021179.1|WP_001120112.1|3597816_3598509_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP021179.1|WP_001264949.1|3598481_3599510_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLSAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPHVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Crispr_ID: NZ_CP021179_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021179_3

3747510-3747592

Orphan

I-F

Consensus_repeat	Method
ATCTGCCTGTACGGCAGTGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021179_3

>merge|NZ_CP021179|3|3747510-3747592|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACTTGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTAAGCTGCCTGTACGGCAGTGAACT

>NZ_CP021179|3|3|3747510-3747592|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACT	TGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTA
AGCTGCCTGTACGGCAGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021179.1\|WP_000188152.1\|3751050_3752997_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP021179.1\|WP_000934041.1\|3747803_3750080_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP021179.1\|WP_001385255.1\|3741293_3742259_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP021179.1\|WP_001040187.1\|3746900_3747119_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP021179.1\|WP_000488716.1\|3757295_3757991_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP021179.1\|WP_001043561.1\|3742381_3744148_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP021179.1\|WP_000458841.1\|3759448_3761101_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP021179.1\|WP_000746478.1\|3752993_3754109_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP021179.1\|WP_000886683.1\|3732507_3733800_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP021179.1\|WP_001295343.1\|3735244_3735856_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP021179.1\|WP_001241674.1\|3745911_3746616_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP021179.1\|WP_000228473.1\|3740255_3740750_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP021179.1\|WP_001351020.1\|3754259_3755216_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP021179.1\|WP_000077041.1\|3736014_3740121_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP021179.1\|WP_000491137.1\|3758405_3759305_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP021179.1\|WP_000520781.1\|3750110_3750431_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP021179.1\|WP_001202204.1\|3744148_3745870_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP021179.1\|WP_000599803.1\|3755212_3756871_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP021179.1\|WP_000410785.1\|3750753_3750978_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP021179.1\|WP_000067797.1\|3733890_3735234_-\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355

Protein	Function_ID	Function_description	E-value
NZ_CP021179.1\|WP_000188152.1\|3751050_3752997_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP021179.1\|WP_000934041.1\|3747803_3750080_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP021179.1\|WP_001385255.1\|3741293_3742259_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP021179.1\|WP_001040187.1\|3746900_3747119_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP021179.1\|WP_000488716.1\|3757295_3757991_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP021179.1\|WP_001043561.1\|3742381_3744148_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP021179.1\|WP_000458841.1\|3759448_3761101_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP021179.1\|WP_000746478.1\|3752993_3754109_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP021179.1\|WP_000886683.1\|3732507_3733800_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP021179.1\|WP_001295343.1\|3735244_3735856_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP021179.1\|WP_001241674.1\|3745911_3746616_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
NZ_CP021179.1\|WP_000228473.1\|3740255_3740750_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP021179.1\|WP_001351020.1\|3754259_3755216_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131
NZ_CP021179.1\|WP_000077041.1\|3736014_3740121_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP021179.1\|WP_000491137.1\|3758405_3759305_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
NZ_CP021179.1\|WP_000520781.1\|3750110_3750431_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP021179.1\|WP_001202204.1\|3744148_3745870_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP021179.1\|WP_000599803.1\|3755212_3756871_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP021179.1\|WP_000410785.1\|3750753_3750978_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP021179.1\|WP_000067797.1\|3733890_3735234_-\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0

>NZ_CP021179.1|WP_001040187.1|3746900_3747119_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP021179.1|WP_001241674.1|3745911_3746616_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP021179.1|WP_001202204.1|3744148_3745870_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP021179.1|WP_001043561.1|3742381_3744148_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP021179.1|WP_001385255.1|3741293_3742259_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP021179.1|WP_000228473.1|3740255_3740750_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP021179.1|WP_000077041.1|3736014_3740121_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP021179.1|WP_001295343.1|3735244_3735856_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP021179.1|WP_000067797.1|3733890_3735234_-|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP021179.1|WP_000886683.1|3732507_3733800_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP021179.1|WP_000934041.1|3747803_3750080_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP021179.1|WP_000520781.1|3750110_3750431_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP021179.1|WP_000410785.1|3750753_3750978_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP021179.1|WP_000188152.1|3751050_3752997_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP021179.1|WP_000746478.1|3752993_3754109_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP021179.1|WP_001351020.1|3754259_3755216_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP021179.1|WP_000599803.1|3755212_3756871_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP021179.1|WP_000488716.1|3757295_3757991_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP021179.1|WP_000491137.1|3758405_3759305_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP021179.1|WP_000458841.1|3759448_3761101_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP021179_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021179_4

4633515-4633647

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP021179_4

>merge|NZ_CP021179|4|4633515-4633647|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAG

>NZ_CP021179|4|1|4633515-4633647|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021179.1\|WP_000125566.1\|4625203_4625437_-\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	unknown	unknown	gnl\|CDD\|227619
NZ_CP021179.1\|WP_001126342.1\|4641820_4645042_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP021179.1\|WP_000349970.1\|4636712_4637930_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP021179.1\|WP_000692217.1\|4632653_4633424_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP021179.1\|WP_000787105.1\|4633896_4635411_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP021179.1\|WP_001295758.1\|4640455_4641046_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP021179.1\|WP_000600725.1\|4628048_4628579_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP021179.1\|WP_000624375.1\|4625522_4626002_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP021179.1\|WP_000004399.1\|4639664_4640450_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP021179.1\|WP_000377106.1\|4626193_4628056_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP021179.1\|WP_000203744.1\|4630076_4630364_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP021179.1\|WP_001295757.1\|4645059_4646208_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP021179.1\|WP_001183209.1\|4628686_4630018_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP021179.1\|WP_001295759.1\|4638002_4639556_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP021179.1\|WP_000333124.1\|4641164_4641560_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP021179.1\|WP_000196510.1\|4641594_4641813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021179.1\|WP_001160964.1\|4624916_4625201_-\|CcdB-family-protein	unknown	unknown	gnl\|CDD\|376629
NZ_CP021179.1\|WP_000347117.1\|4635441_4636584_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP021179.1\|WP_001091513.1\|4631697_4632639_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP021179.1\|WP_001287712.1\|4630360_4631647_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273

Protein	Function_ID	Function_description	E-value
NZ_CP021179.1\|WP_000125566.1\|4625203_4625437_-\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	2.77856e-23
NZ_CP021179.1\|WP_001126342.1\|4641820_4645042_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP021179.1\|WP_000349970.1\|4636712_4637930_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP021179.1\|WP_000692217.1\|4632653_4633424_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	2.42827e-170
NZ_CP021179.1\|WP_000787105.1\|4633896_4635411_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP021179.1\|WP_001295758.1\|4640455_4641046_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.67383e-142
NZ_CP021179.1\|WP_000600725.1\|4628048_4628579_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP021179.1\|WP_000624375.1\|4625522_4626002_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP021179.1\|WP_000004399.1\|4639664_4640450_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	6.92249e-179
NZ_CP021179.1\|WP_000377106.1\|4626193_4628056_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP021179.1\|WP_000203744.1\|4630076_4630364_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.0161e-68
NZ_CP021179.1\|WP_001295757.1\|4645059_4646208_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP021179.1\|WP_001183209.1\|4628686_4630018_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.5672e-59
NZ_CP021179.1\|WP_001295759.1\|4638002_4639556_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP021179.1\|WP_000333124.1\|4641164_4641560_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.21297e-74
NZ_CP021179.1\|WP_001160964.1\|4624916_4625201_-\|CcdB-family-protein	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	1.5415e-33
NZ_CP021179.1\|WP_000347117.1\|4635441_4636584_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP021179.1\|WP_001091513.1\|4631697_4632639_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP021179.1\|WP_001287712.1\|4630360_4631647_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0

>NZ_CP021179.1|WP_000692217.1|4632653_4633424_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP021179.1|WP_001091513.1|4631697_4632639_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLSGKPDERMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLNAAVSNDASAVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP021179.1|WP_001287712.1|4630360_4631647_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFNGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP021179.1|WP_000203744.1|4630076_4630364_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKRDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP021179.1|WP_001183209.1|4628686_4630018_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFEEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWTLPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP021179.1|WP_000600725.1|4628048_4628579_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP021179.1|WP_000377106.1|4626193_4628056_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRRAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFVLSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP021179.1|WP_000624375.1|4625522_4626002_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP021179.1|WP_000125566.1|4625203_4625437_-|type-II-toxin-antitoxin-system-CcdA-family-antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
>NZ_CP021179.1|WP_001160964.1|4624916_4625201_-|CcdB-family-protein
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFSRIRPPERLNPILLLIDGKEYVLMTHETATVPVNALGTKFCDASAHRTLIK
>NZ_CP021179.1|WP_000787105.1|4633896_4635411_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSVLVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKY
>NZ_CP021179.1|WP_000347117.1|4635441_4636584_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP021179.1|WP_000349970.1|4636712_4637930_+|L-carnitine-CoA-transferase
MDHLTMPKFGPLSGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIAECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP021179.1|WP_001295759.1|4638002_4639556_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDIYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSVRAFWGQVQKYRATVTECIPMMIRTLMVQPPSVNDRQHCLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP021179.1|WP_000004399.1|4639664_4640450_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP021179.1|WP_001295758.1|4640455_4641046_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVLAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP021179.1|WP_000333124.1|4641164_4641560_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP021179.1|WP_000196510.1|4641594_4641813_+|hypothetical-protein
MTRFAAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKRSSSENRISYLIKLADEKYPP
>NZ_CP021179.1|WP_001126342.1|4641820_4645042_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP021179.1|WP_001295757.1|4645059_4646208_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGSWTLTGGLPEAKKEDELPYHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIALIEQYRKTAK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021179_4	4.1\|4633532\|42\|NZ_CP021179\|PILER-CR	4633532-4633573	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
NZ_CP021179_1	1.1\|2909056\|38\|NZ_CP021179\|CRISPRCasFinder	2909056-2909093	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP021179_2	2.1\|3588746\|40\|NZ_CP021179\|CRISPRCasFinder	3588746-3588785	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	2	0.95
NZ_CP021179_4	4.2\|4633591\|40\|NZ_CP021179\|PILER-CR	4633591-4633630	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	2	0.95

1. spacer 4.1|4633532|42|NZ_CP021179|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

2. spacer 1.1|2909056|38|NZ_CP021179|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 2.1|3588746|40|NZ_CP021179|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 2, identity: 0.95

gcgctgcgggtcatttttgaaattacctccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.***********.************

4. spacer 4.2|4633591|40|NZ_CP021179|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

catggcgtagcaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *********************.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

290999 : 369690

Enterobacteria_phage(57.14%)

tail,holin,integrase,tRNA,protease,plate,capsid,terminase,portal,head

attL 306933:306975|attR 340575:340617

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208242.1\|290999_291530_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293344.1\|291539_292871_+	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_001305044.1\|292937_293864_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872908.1\|293956_294442_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001296623.1\|294526_294772_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084268.1\|295196_296042_+	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_000136804.1\|296064_297573_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250644.1\|297743_298754_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000796342.1\|298850_299597_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_000323555.1\|299601_300030_-	universal stress protein UspD	NA	NA	NA	NA
WP_000655986.1\|300056_300356_-	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000155252.1\|300567_301008_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802235.1\|301108_301708_+	YiiQ family protein	NA	NA	NA	NA
WP_001216325.1\|301815_302583_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_001296622.1\|302637_303393_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_000758732.1\|303499_304489_-	sulfate/thiosulfate ABC transporter substrate-binding protein Sbp	NA	NA	NA	NA
WP_000591795.1\|304808_305771_-	6-phosphofructokinase	NA	NA	NA	NA
WP_001076748.1\|305951_306854_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
306933:306975	attL	NA	NA	NA	NA
WP_072129309.1\|307102_307351_-	ogr/Delta-like zinc finger family protein	S4TNZ3	Salmonella_phage	1.2e-08	45.3
WP_052929135.1\|307389_308499_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.1e-194	94.0
WP_021533073.1\|308655_309840_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.3e-224	98.5
WP_000290462.1\|309839_310352_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000651572.1\|310407_310782_+\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.0e-37	73.2
WP_170891090.1\|310790_310946_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	2.2e-21	94.1
WP_086908449.1\|310932_313740_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	93.9
WP_000979954.1\|313752_314241_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.6e-86	100.0
WP_000905060.1\|314276_314864_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.4e-105	100.0
WP_000071739.1\|319240_319771_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	1.1e-93	99.4
WP_001111924.1\|319763_320660_-\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	3.5e-156	99.0
WP_001067548.1\|320663_320993_-	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	2.2e-55	100.0
WP_077626020.1\|321010_321577_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	3.9e-100	97.9
WP_000356345.1\|321588_322224_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	3.1e-114	99.1
WP_000920597.1\|322216_322684_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.2e-85	98.7
WP_000780540.1\|322821_323229_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	2.5e-64	96.3
WP_000072328.1\|323225_323618_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.3e-70	99.2
WP_000104350.1\|323614_323938_-\|holin	phage holin family protein	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000864897.1\|323940_324141_-\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	6.0e-32	98.5
WP_000063082.1\|324140_324635_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-89	99.4
WP_086908451.1\|324737_325538_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.4e-124	88.0
WP_001055118.1\|325583_326636_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	6.8e-199	100.0
WP_001262673.1\|326658_327495_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	100.0
WP_000613769.1\|327649_329401_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	0.0e+00	99.3
WP_000087812.1\|329400_330447_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
WP_052929073.1\|330940_331579_-	hypothetical protein	NA	NA	NA	NA
WP_052929074.1\|331582_332581_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_086908452.1\|332739_335127_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	0.0e+00	88.5
WP_072129282.1\|335123_336038_-	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	1.6e-95	53.2
WP_023309722.1\|336034_336355_-	DUF4406 domain-containing protein	A0A1I9KFD3	Aeromonas_phage	1.9e-27	67.8
WP_086908453.1\|336354_337326_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	4.7e-138	81.3
WP_052929078.1\|337327_337540_-	hypothetical protein	A0A0M4R514	Salmonella_phage	2.8e-19	65.7
WP_016246743.1\|337626_337857_-	DUF2724 domain-containing protein	A0A0M4S6M9	Salmonella_phage	1.4e-37	97.4
WP_077817609.1\|337846_338053_-	DUF4761 family protein	A0A0M5M1I3	Salmonella_phage	1.6e-32	98.5
WP_086908454.1\|338063_338267_-	hypothetical protein	A0A0M3ULI0	Salmonella_phage	9.8e-30	95.5
WP_032969839.1\|338277_338559_-	hypothetical protein	A0A0M4RCW1	Salmonella_phage	9.0e-50	97.8
WP_032969836.1\|338654_338891_+	hypothetical protein	NA	NA	NA	NA
WP_000229412.1\|339096_339417_+	helix-turn-helix transcriptional regulator	A0A0M5M1I9	Salmonella_phage	6.9e-54	100.0
WP_052929080.1\|339486_340467_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	1.8e-185	98.2
WP_001223800.1\|340644_341145_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
340575:340617	attR	NA	NA	NA	NA
WP_001033720.1\|341294_341993_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580417.1\|341989_343363_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9
WP_001270242.1\|343533_344208_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_001296619.1\|345597_346218_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	5.4e-63	58.9
WP_001296618.1\|347532_348471_-	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000217147.1\|348454_349291_-	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_000144100.1\|349578_351048_+	rhamnulokinase	NA	NA	NA	NA
WP_001296617.1\|351044_352304_+	L-rhamnose isomerase	NA	NA	NA	NA
WP_001179746.1\|352570_353395_+	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_000619499.1\|353404_353719_+	L-rhamnose mutarotase	NA	NA	NA	NA
WP_000749934.1\|353759_355154_-	carbohydrate porin	NA	NA	NA	NA
WP_000753589.1\|356149_356983_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_077633686.1\|357176_360227_+	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	1.1e-07	23.8
WP_000331383.1\|360239_361142_+	formate dehydrogenase O subunit beta	NA	NA	NA	NA
WP_000829013.1\|361138_361774_+	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000027696.1\|361770_362700_+	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_001068514.1\|362881_363124_-	hypothetical protein	NA	NA	NA	NA
WP_001038650.1\|363413_364262_+	hypothetical protein	NA	NA	NA	NA
WP_032140890.1\|364577_365027_+	hypothetical protein	NA	NA	NA	NA
WP_001251293.1\|365211_365430_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_001296612.1\|365826_366105_-	hypothetical protein	NA	NA	NA	NA
WP_000356397.1\|366463_366754_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000897302.1\|366754_367066_-	hypothetical protein	NA	NA	NA	NA
WP_001385591.1\|367294_368203_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001297068.1\|368266_369208_-	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_000560981.1\|369252_369690_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA

DBSCAN-SWA_2

1416739 : 1463429

Stx2-converting_phage(45.45%)

lysis,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000080195.1\|1416739_1418353_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|1418383_1418734_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|1418730_1419156_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_042012683.1\|1419270_1419612_+	hypothetical protein	NA	NA	NA	NA
WP_000997995.1\|1419832_1421371_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-281	93.9
WP_000624646.1\|1422498_1422849_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.4e-36	62.1
WP_000435655.1\|1422845_1423271_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	3.6e-34	74.2
WP_085949591.1\|1423642_1423780_-\|transposase	transposase domain-containing protein	NA	NA	NA	NA
WP_001149834.1\|1423931_1424849_+	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_000629094.1\|1424882_1425758_+	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_000376547.1\|1425806_1427279_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-06	22.7
WP_000948500.1\|1427282_1428113_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001296386.1\|1428158_1428869_+	N-acetylneuraminic acid channel protein	NA	NA	NA	NA
WP_000865295.1\|1428881_1429991_+	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_001305022.1\|1430040_1430976_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001282578.1\|1431011_1431746_-	transcriptional regulator NanR	NA	NA	NA	NA
WP_000274668.1\|1431845_1432832_+	hypothetical protein	Q08JA2	Stx2-converting_phage	4.0e-108	57.7
WP_096928816.1\|1432983_1434211_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	7.2e-168	94.4
WP_001223344.1\|1434711_1436802_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_001296383.1\|1437663_1437906_+	hypothetical protein	NA	NA	NA	NA
WP_001296382.1\|1438196_1438556_+	hypothetical protein	NA	NA	NA	NA
WP_000266542.1\|1438559_1438775_+	hypothetical protein	NA	NA	NA	NA
WP_001254932.1\|1443555_1444707_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_011076574.1\|1449439_1449583_+	hypothetical protein	NA	NA	NA	NA
WP_000973516.1\|1450133_1452335_-	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_000750130.1\|1452416_1453694_-	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_001015715.1\|1453690_1455433_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_001287500.1\|1455432_1456380_-	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001296374.1\|1456380_1458105_-	aerobactin synthase IucA	NA	NA	NA	NA
WP_000074472.1\|1458240_1459434_+	MFS transporter	NA	NA	NA	NA
WP_001296373.1\|1460151_1460580_-	DUF417 family protein	NA	NA	NA	NA
WP_000109147.1\|1460619_1461180_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001110186.1\|1461221_1461482_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001513409.1\|1463315_1463429_+\|lysis	lysis protein	NA	NA	NA	NA

DBSCAN-SWA_3

1754911 : 1762051

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001279004.1\|1754911_1755550_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5
WP_000590411.1\|1755546_1756809_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_000847996.1\|1756805_1757714_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_001296319.1\|1757909_1758677_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_001141293.1\|1758727_1759384_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_000103863.1\|1759489_1762051_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8

DBSCAN-SWA_4

2338651 : 2348096

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569347.1\|2338651_2339578_+	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.8
WP_000783109.1\|2339582_2340314_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|2340294_2340402_-	protein YohO	NA	NA	NA	NA
WP_001240408.1\|2340461_2341193_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001295431.1\|2341414_2343100_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|2343096_2343816_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|2343862_2344333_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|2344373_2344835_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001296230.1\|2344959_2346963_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001292786.1\|2346959_2348096_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7

DBSCAN-SWA_5

2442272 : 2448575

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116066.1\|2442272_2443667_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0
WP_000183040.1\|2443841_2444735_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.0e-46	42.0
WP_000699407.1\|2445107_2446193_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-101	53.9
WP_001023641.1\|2446192_2447092_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_000857525.1\|2447149_2448028_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.5
WP_001100793.1\|2448032_2448575_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8

DBSCAN-SWA_6

2479378 : 2485830

Pseudomonas_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000086752.1\|2479378_2480023_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.8e-24	32.9
WP_000692345.1\|2480041_2480263_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186200.1\|2480325_2480802_-	RadC family protein	NA	NA	NA	NA
WP_001542276.1\|2480817_2481291_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	4.3e-12	33.1
WP_001164966.1\|2481384_2481630_-	hypothetical protein	NA	NA	NA	NA
WP_001542275.1\|2481629_2482448_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	8.8e-45	38.6
WP_000846703.1\|2482668_2483079_-	hypothetical protein	NA	NA	NA	NA
WP_001016257.1\|2483527_2484274_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|2484288_2485830_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4

DBSCAN-SWA_7

2629971 : 2719469

103

Pectobacterium_phage(20.45%)

tail,holin,integrase,tRNA,transposase,plate,capsid,terminase,portal

attL 2629786:2629845|attR 2673650:2673774

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2629786:2629845	attL	NA	NA	NA	NA
WP_001531780.1\|2629971_2630988_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
WP_000833838.1\|2630956_2631220_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_000916334.1\|2631429_2631612_-	hypothetical protein	NA	NA	NA	NA
WP_000100753.1\|2631611_2632181_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
WP_000151806.1\|2632177_2634394_-	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000388260.1\|2634424_2634745_-	hypothetical protein	NA	NA	NA	NA
WP_001296165.1\|2635755_2636169_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000360804.1\|2636267_2636498_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_000431205.1\|2636556_2637033_+	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000943914.1\|2637072_2637297_+	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_001023813.1\|2637293_2638049_+	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
WP_000609322.1\|2638038_2639454_+	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_000214056.1\|2639492_2639903_+	hypothetical protein	NA	NA	NA	NA
WP_000918616.1\|2639904_2640141_+	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|2640137_2640449_+	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000661082.1\|2640445_2640670_+	hypothetical protein	NA	NA	NA	NA
WP_001531776.1\|2641351_2642140_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_001237642.1\|2642314_2643238_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_000536231.1\|2644425_2645124_+	hypothetical protein	Q858R8	Enterobacteria_phage	1.5e-117	91.4
WP_001138663.1\|2645586_2646192_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|2646201_2646690_-	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_000536919.1\|2647088_2647322_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|2647565_2648207_+	hypothetical protein	NA	NA	NA	NA
WP_001025459.1\|2648358_2648538_+	hypothetical protein	NA	NA	NA	NA
WP_000057010.1\|2648615_2649212_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_000717783.1\|2649208_2649502_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000064384.1\|2649501_2650173_+	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_001294589.1\|2650285_2650669_+	hypothetical protein	NA	NA	NA	NA
WP_000172496.1\|2650668_2650941_+\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_000131873.1\|2650940_2651420_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000734931.1\|2651427_2651622_+	hypothetical protein	NA	NA	NA	NA
WP_001531775.1\|2651681_2651927_-	hypothetical protein	NA	NA	NA	NA
WP_000168117.1\|2652295_2652862_+	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_000148195.1\|2652848_2654711_+\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000203897.1\|2654710_2654944_+	hypothetical protein	NA	NA	NA	NA
WP_000126513.1\|2654940_2656515_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_001145892.1\|2656514_2657822_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000206292.1\|2657821_2658151_+	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001283997.1\|2658209_2659244_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
WP_000105179.1\|2659278_2659698_+	DNA-packaging protein	NA	NA	NA	NA
WP_001531773.1\|2659694_2660075_+	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|2660106_2660787_+	hypothetical protein	NA	NA	NA	NA
WP_000015612.1\|2660783_2661320_+	hypothetical protein	NA	NA	NA	NA
WP_000079174.1\|2661300_2662203_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000901289.1\|2662205_2662547_+	GPW/gp25 family protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000633314.1\|2662543_2663464_+\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000203868.1\|2663466_2664093_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_000829621.1\|2664085_2665270_+\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000626358.1\|2665269_2665659_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_000117510.1\|2665655_2667158_+\|tail	phage tail sheath subtilisin-like domain-containing protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000785563.1\|2667175_2667688_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_000444667.1\|2667700_2667982_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001018353.1\|2668090_2669731_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_001531768.1\|2669766_2670156_+\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001531767.1\|2670317_2670542_+\|tail	tail protein X	NA	NA	NA	NA
WP_085949154.1\|2671907_2673054_+\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	2.4e-173	96.3
WP_000847882.1\|2673900_2674566_+	UPF0149 family protein YecA	NA	NA	NA	NA
2673650:2673774	attR	NA	NA	NA	NA
WP_000797555.1\|2674616_2675828_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000377224.1\|2676018_2676258_+	YecH family protein	NA	NA	NA	NA
WP_000917208.1\|2676295_2676793_-	non-heme ferritin	NA	NA	NA	NA
WP_001237881.1\|2676964_2677288_-	YecR-like lipofamily protein	NA	NA	NA	NA
WP_010723106.1\|2677551_2677638_+	stress response protein AzuC	NA	NA	NA	NA
WP_000082127.1\|2677752_2678004_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_000179469.1\|2678081_2678585_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000548680.1\|2679379_2680369_+	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_001187827.1\|2680438_2681953_+	arabinose ABC transporter ATP binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000100203.1\|2681967_2682954_+	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001296149.1\|2683120_2683921_+	trehalose-phosphatase	NA	NA	NA	NA
WP_001296148.1\|2683895_2685320_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_000122413.1\|2685326_2685755_-	universal stress protein UspC	NA	NA	NA	NA
WP_001295647.1\|2686534_2686885_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_001291603.1\|2686887_2687466_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_000906342.1\|2687592_2688480_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_000795641.1\|2688476_2689403_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_001531763.1\|2689407_2691372_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_000147302.1\|2691392_2691896_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_001296146.1\|2692040_2693702_+	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000204320.1\|2693992_2694853_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000036371.1\|2694855_2695905_+	protein-glutamate methylesterase/protein glutamine deamidase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000763867.1\|2695919_2696309_+	chemotaxis response regulator CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000983600.1\|2696319_2696964_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_001278946.1\|2697152_2698301_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000066973.1\|2698293_2700372_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001202076.1\|2700371_2700764_+	flagellar protein FlhE	NA	NA	NA	NA
WP_001025326.1\|2700816_2702550_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001490174.1\|2702765_2703332_+	VOC family protein	NA	NA	NA	NA
WP_001185734.1\|2703345_2704092_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214293.1\|2704479_2705580_+	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_000176764.1\|2705604_2708034_+	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_000564759.1\|2708069_2709041_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|2709037_2709781_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252980.1\|2709821_2710217_-	MAPEG family protein	NA	NA	NA	NA
WP_000639277.1\|2710269_2711088_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000891625.1\|2711084_2711651_-	hydrolase	NA	NA	NA	NA
WP_001258676.1\|2711960_2713733_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_077249130.1\|2713725_2714178_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_000907234.1\|2714206_2714947_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001295503.1\|2714981_2715503_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_001024911.1\|2715504_2716107_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_072093883.1\|2716177_2716243_+	hypothetical protein	NA	NA	NA	NA
WP_000580323.1\|2716381_2716993_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_000568520.1\|2717001_2718012_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_099156422.1\|2718121_2719469_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.7e-74	52.4

DBSCAN-SWA_8

3212082 : 3283049

Stx2-converting_phage(24.14%)

tail,holin,integrase,transposase,protease,capsid,terminase,portal,head

attL 3240968:3240982|attR 3284013:3284027

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422062.1\|3212082_3213132_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_000559273.1\|3213351_3214110_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.4
WP_001278898.1\|3214106_3214697_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001000715.1\|3214753_3215062_-	hypothetical protein	NA	NA	NA	NA
WP_000622024.1\|3215071_3216094_-	hypothetical protein	NA	NA	NA	NA
WP_001291206.1\|3216263_3217139_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001296033.1\|3217351_3219247_-	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001295575.1\|3219274_3219895_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001285702.1\|3219891_3220773_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001700591.1\|3220910_3220955_+	trp operon leader peptide	NA	NA	NA	NA
WP_001194644.1\|3221046_3222609_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763535.1\|3222608_3224204_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001195273.1\|3224207_3225566_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.9e-37	41.2
WP_000209513.1\|3225577_3226771_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000443082.1\|3226770_3227577_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_001296031.1\|3227952_3228228_+	ash family protein	S5MQL6	Escherichia_phage	1.1e-10	52.9
WP_001348267.1\|3228224_3228782_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	4.2e-30	63.8
WP_000251936.1\|3228908_3229079_-	hypothetical protein	A0A0U2RK60	Escherichia_phage	9.4e-10	62.5
WP_000937495.1\|3229193_3229463_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_000240999.1\|3229519_3230188_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001421220.1\|3230386_3230569_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.4e-24	95.0
WP_001513292.1\|3230694_3231663_+	hypothetical protein	A0A0F7LDR4	Escherichia_phage	6.5e-47	38.8
WP_001164137.1\|3231678_3232206_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	8.4e-73	77.7
WP_000972097.1\|3232236_3232770_-\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.8e-67	70.1
WP_023363168.1\|3232771_3235597_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q858V4	Yersinia_virus	9.0e-04	63.6
WP_001016257.1\|3236058_3236805_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|3236819_3238361_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_000514710.1\|3239001_3242475_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.7
3240968:3240982	attL	NA	NA	NA	NA
WP_061089814.1\|3242817_3243450_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.0e-101	97.6
WP_000194730.1\|3243395_3244139_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	4.3e-147	97.6
WP_001296027.1\|3244149_3244848_-\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	5.8e-130	97.4
WP_000807937.1\|3244847_3245189_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	9.0e-60	95.6
WP_000212991.1\|3245181_3248424_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	91.6
WP_001513217.1\|3248471_3248681_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000710949.1\|3248776_3249151_-\|tail	phage tail assembly chaperone	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001275441.1\|3249165_3249882_-	immunoglobulin domain-containing protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000133388.1\|3249948_3250293_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|3250289_3250736_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|3250732_3251083_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|3251092_3251419_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_000267294.1\|3251415_3254001_-\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	100.0
WP_001063099.1\|3253946_3254168_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000173031.1\|3254212_3256150_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
WP_001296023.1\|3256213_3257875_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.7
WP_000958366.1\|3257871_3258435_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.6e-82	92.0
WP_000829185.1\|3258724_3259090_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_000095741.1\|3259131_3259332_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000736382.1\|3259530_3259746_-	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|3259831_3260017_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_032140280.1\|3260238_3260325_-	hypothetical protein	NA	NA	NA	NA
WP_000992071.1\|3260879_3261413_-	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_085949154.1\|3261522_3262670_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	2.4e-173	96.3
WP_000369850.1\|3262771_3263044_+	hypothetical protein	NA	NA	NA	NA
WP_000193278.1\|3263009_3263354_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000284510.1\|3263358_3263574_-\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_016230612.1\|3263724_3265578_-	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
WP_000871291.1\|3265838_3266174_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_023142244.1\|3266454_3266586_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.1e-05	100.0
WP_000024331.1\|3267387_3268437_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.4e-198	95.4
WP_000917751.1\|3268588_3268786_-	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
WP_001513213.1\|3269012_3269834_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.7e-80	60.1
WP_000140014.1\|3269830_3270211_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.9e-35	64.5
WP_001265085.1\|3270211_3271267_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
WP_001329966.1\|3271268_3271541_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_000018429.1\|3271708_3271921_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_000150294.1\|3272101_3272767_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001151161.1\|3272941_3273367_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
WP_000450998.1\|3273382_3274153_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_000788950.1\|3274174_3274921_-	ATP-binding protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_000095675.1\|3274927_3275890_-	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	1.4e-70	56.4
WP_000693845.1\|3275912_3276338_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000471549.1\|3276334_3276550_-	transcriptional regulator	NA	NA	NA	NA
WP_000103687.1\|3276599_3277316_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.7e-52	42.0
WP_000379589.1\|3277588_3277744_+	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_001171951.1\|3277903_3278122_+	hypothetical protein	NA	NA	NA	NA
WP_000449179.1\|3278687_3278876_+	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|3278872_3279064_+	DUF1482 family protein	NA	NA	NA	NA
WP_016230610.1\|3279156_3281628_+	exonuclease	A0A192Y6E0	Salmonella_phage	5.7e-55	56.0
WP_000113189.1\|3281692_3281941_+	excisionase	NA	NA	NA	NA
WP_000113700.1\|3281918_3283049_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	3.4e-103	51.4
3284013:3284027	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3422261 : 3467970

Enterobacteria_phage(56.0%)

tail,lysis,holin,integrase,tRNA,capsid,terminase,portal,head

attL 3441045:3441059|attR 3469639:3469653

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000654172.1\|3422261_3422540_-	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4
WP_000290538.1\|3422536_3424558_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M0V5	Enterobacteria_phage	7.2e-181	72.3
WP_001531667.1\|3424616_3428099_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_023149564.1\|3428159_3428762_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-88	85.6
WP_023146277.1\|3428698_3429442_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_001152626.1\|3429446_3430145_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.1e-134	99.6
WP_000847375.1\|3430144_3430474_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
WP_000840216.1\|3430470_3433032_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	98.4
WP_000459457.1\|3433024_3433459_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479203.1\|3433440_3433863_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	94.3
WP_001295979.1\|3433878_3434619_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	1.6e-130	98.0
WP_000683150.1\|3434626_3435022_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.9e-70	98.5
WP_000985120.1\|3435018_3435597_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	92.7
WP_000753018.1\|3435608_3435962_-\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_000158908.1\|3435973_3436372_-	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	1.0e-62	98.5
WP_000063293.1\|3436413_3437439_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
WP_001295978.1\|3437494_3437827_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000123268.1\|3437836_3439156_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.1e-230	97.7
WP_001295977.1\|3439136_3440738_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	98.9
WP_000198149.1\|3440734_3440941_-	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027261.1\|3440937_3442863_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
3441045:3441059	attL	NA	NA	NA	NA
WP_000453620.1\|3442837_3443383_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	98.3
WP_000881610.1\|3443946_3444129_-	hypothetical protein	NA	NA	NA	NA
WP_000830178.1\|3444335_3444662_-	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001298464.1\|3445142_3445436_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_001228695.1\|3445526_3445709_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001180486.1\|3445925_3446402_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	7.3e-84	94.9
WP_000544528.1\|3446388_3446694_-\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001097224.1\|3447015_3447705_-	antiterminator Q	I6PDF8	Cronobacter_phage	4.9e-57	48.5
WP_000971096.1\|3447701_3447842_-	YlcG family protein	K7PHH3	Enterobacteria_phage	8.5e-09	68.9
WP_001099488.1\|3447838_3448201_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-59	95.7
WP_000774479.1\|3448197_3448488_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_000224914.1\|3448480_3448651_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001053005.1\|3448650_3449106_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.6e-59	66.9
WP_072147164.1\|3449102_3449204_-	hypothetical protein	NA	NA	NA	NA
WP_000700202.1\|3449553_3450597_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_022645049.1\|3450633_3454899_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000788794.1\|3455148_3455850_-	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	1.5e-125	97.0
WP_000147894.1\|3455846_3456866_-	replication protein	A0A0M5M7Y1	Salmonella_phage	8.8e-111	64.1
WP_001182900.1\|3456862_3457402_-	toxin YdaT domain-containing protein	K7PJT7	Enterobacteria_phage	2.6e-61	67.0
WP_001067458.1\|3457471_3457702_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000858975.1\|3457806_3458496_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_000233576.1\|3459091_3459298_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995418.1\|3459373_3459670_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.9e-48	98.0
WP_000100847.1\|3459675_3460461_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186848.1\|3460457_3461138_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000149537.1\|3461134_3461317_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000548516.1\|3461289_3461481_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_021533932.1\|3461491_3461773_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000763374.1\|3461871_3462093_+	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_000002139.1\|3462092_3462419_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000490213.1\|3462402_3462642_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000088653.1\|3462781_3463018_+	excisionase	NA	NA	NA	NA
WP_000741335.1\|3463007_3464150_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z02	Phage_21	3.6e-206	100.0
WP_000444487.1\|3464263_3465514_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248677.1\|3465685_3466339_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|3466348_3466810_+	phosphatase NudJ	NA	NA	NA	NA
WP_001295972.1\|3466863_3467970_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
3469639:3469653	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3665078 : 3750431

Burkholderia_virus(33.33%)

tail,holin,tRNA,integrase,transposase,plate,protease,capsid

attL 3674363:3674378|attR 3693684:3693699

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295930.1\|3665078_3665864_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899600.1\|3665999_3666779_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436917.1\|3666755_3667649_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011610.1\|3667802_3668549_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350057.1\|3668545_3668728_-	protein YcaR	NA	NA	NA	NA
WP_000056492.1\|3668779_3670012_-	YcaQ family DNA glycosylase	NA	NA	NA	NA
WP_000570547.1\|3670048_3671035_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551259.1\|3671031_3672780_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.3e-57	29.8
WP_000705731.1\|3672816_3675081_-	ComEC family protein	NA	NA	NA	NA
3674363:3674378	attL	NA	NA	NA	NA
WP_000167336.1\|3675286_3675571_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_000140327.1\|3675730_3677404_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_000125016.1\|3677514_3678198_-	(d)CMP kinase	NA	NA	NA	NA
WP_029364556.1\|3678370_3679153_-	metallopeptidase YcaL	NA	NA	NA	NA
WP_001281701.1\|3679296_3679686_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2
WP_001170114.1\|3679657_3680107_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	6.1e-24	45.1
WP_000206212.1\|3680108_3680315_-	hypothetical protein	NA	NA	NA	NA
WP_000631813.1\|3680304_3680535_-	hypothetical protein	NA	NA	NA	NA
WP_000132039.1\|3680531_3681215_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-32	36.1
WP_000763554.1\|3681211_3681427_-	hypothetical protein	NA	NA	NA	NA
WP_001295929.1\|3681441_3681738_-	hypothetical protein	NA	NA	NA	NA
WP_000632576.1\|3681747_3682020_-	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|3682308_3682839_-	host-nuclease inhibitor Gam family protein	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_000843446.1\|3682866_3683136_-	hypothetical protein	NA	NA	NA	NA
WP_000960679.1\|3683138_3684305_-	AAA family ATPase	A4JWN1	Burkholderia_virus	2.2e-121	59.4
WP_000186588.1\|3684315_3686085_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	1.5e-227	69.4
WP_001095645.1\|3686100_3686418_-	hypothetical protein	NA	NA	NA	NA
WP_000533817.1\|3686417_3687338_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	1.6e-74	56.2
WP_000047759.1\|3687348_3687657_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	2.7e-23	55.9
WP_000123378.1\|3687709_3687898_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_000031013.1\|3687991_3688348_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000783854.1\|3688464_3689229_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.2e-100	64.4
WP_001069611.1\|3689419_3689635_-	hypothetical protein	NA	NA	NA	NA
WP_001295927.1\|3689636_3690038_+	hypothetical protein	NA	NA	NA	NA
WP_000194951.1\|3690013_3690742_-	hypothetical protein	NA	NA	NA	NA
WP_000793146.1\|3690872_3691223_+\|holin	putative holin	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_001104440.1\|3691225_3691966_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000264665.1\|3691949_3692600_+	hypothetical protein	J9SVN7	Pseudomonas_phage	2.8e-09	32.9
WP_000175099.1\|3692596_3692923_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	48.6
WP_000227701.1\|3692922_3693234_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000124060.1\|3693233_3693779_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
3693684:3693699	attR	NA	NA	NA	NA
WP_169542415.1\|3693829_3695371_+	hypothetical protein	A4JWJ4	Burkholderia_virus	6.3e-185	62.8
WP_000090684.1\|3695370_3696867_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	9.7e-167	59.0
WP_000117548.1\|3696847_3697669_+\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	1.8e-98	61.9
WP_000135514.1\|3697671_3698130_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_001273074.1\|3698344_3699460_+	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
WP_001286908.1\|3699474_3700428_+	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_000537457.1\|3700437_3700776_+	DUF2190 family protein	NA	NA	NA	NA
WP_000271668.1\|3700777_3701224_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_001101804.1\|3701223_3701688_+	Gp37 family protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000666499.1\|3701687_3701939_+	hypothetical protein	NA	NA	NA	NA
WP_000729834.1\|3701928_3703356_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_162832341.1\|3703352_3703877_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.1e-67	66.7
WP_000110114.1\|3703879_3704161_+	hypothetical protein	NA	NA	NA	NA
WP_000084213.1\|3704258_3704594_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001202894.1\|3704517_3704676_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000016538.1\|3704751_3707703_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.8e-86	29.9
WP_000458387.1\|3707702_3708587_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_000478224.1\|3708586_3708799_+\|tail	tail protein X	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000808007.1\|3708786_3709941_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.9e-85	47.6
WP_000148266.1\|3709937_3710534_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.2
WP_000859111.1\|3710588_3710936_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
WP_001219098.1\|3710926_3712030_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.4e-106	55.2
WP_000138756.1\|3712022_3712601_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_000527461.1\|3712603_3713935_+\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	4.8e-40	44.4
WP_000072165.1\|3713934_3714549_+\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	2.5e-60	60.5
WP_023142129.1\|3714555_3715017_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	3.9e-34	50.0
WP_064767240.1\|3715027_3715468_-\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	7.1e-41	55.6
WP_000904922.1\|3715527_3716100_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_000445240.1\|3716355_3717639_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057158.1\|3717709_3718798_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8
WP_000642852.1\|3718996_3719689_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_000194832.1\|3719818_3721579_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_001295917.1\|3721984_3722842_+	formate transporter FocA	NA	NA	NA	NA
WP_001292822.1\|3722896_3725179_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
WP_000111043.1\|3725370_3726111_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	8.0e-21	26.5
WP_000109283.1\|3726207_3727356_-	MFS transporter	NA	NA	NA	NA
WP_000165876.1\|3727669_3728296_+	hydrolase	NA	NA	NA	NA
WP_000534666.1\|3728331_3729195_-	dimethyl sulfoxide reductase anchor subunit DmsC	NA	NA	NA	NA
WP_000213098.1\|3729196_3729814_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000850306.1\|3729824_3732269_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
WP_000886683.1\|3732507_3733800_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067797.1\|3733890_3735234_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|3735244_3735856_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077041.1\|3736014_3740121_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|3740255_3740750_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_001385255.1\|3741293_3742259_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.6
WP_001043561.1\|3742381_3744148_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001202204.1\|3744148_3745870_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.2e-14	30.8
WP_001241674.1\|3745911_3746616_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3746900_3747119_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000934041.1\|3747803_3750080_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_000520781.1\|3750110_3750431_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021180

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021179

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection