CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP021433	Yoonia vestfoldensis strain SMR4r plasmid pSMR4r-2, complete sequence	0 crisprs	NA	0	0
NZ_CP021432	Yoonia vestfoldensis strain SMR4r plasmid pSMR4r-1, complete sequence	0 crisprs	PrimPol	0	4
NZ_CP021431	Yoonia vestfoldensis strain SMR4r chromosome, complete genome	1 crisprs	csa3,cas3,WYL,DEDDh	1	9

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9297

Roseobacter_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009827038.1\|3921_4221_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_100161448.1\|4213_4486_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_009827036.1\|4515_5160_-	hypothetical protein	A0A1B0UZ37	Roseobacter_phage	1.1e-29	40.7
WP_009827035.1\|5265_5742_-	hypothetical protein	A0A1B1IUL8	uncultured_Mediterranean_phage	1.0e-29	59.6
WP_009827034.1\|5743_6127_-	hypothetical protein	NA	NA	NA	NA
WP_009827033.1\|6205_6502_-	hypothetical protein	NA	NA	NA	NA
WP_087213650.1\|6618_6999_-	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_087213653.1\|7125_9297_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.4e-33	26.2

DBSCAN-SWA_2

22842 : 23598

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087213662.1\|22842_23598_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	4.2e-17	32.8

DBSCAN-SWA_3

95322 : 100654

Burkholderia_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087205762.1\|95322_96556_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.4e-86	61.8
WP_087213771.1\|98843_99941_-	Fic family protein	D7RWK9	Brochothrix_phage	2.4e-29	29.6
WP_087213772.1\|100063_100654_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.0e-14	26.0

DBSCAN-SWA_4

104436 : 110431

Ochrobactrum_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037954835.1\|104436_105648_-	replication initiation protein RepC	L7TKN6	Rhizobium_phage	1.4e-25	29.8
WP_037954833.1\|105861_106791_-	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	8.8e-17	30.3
WP_009827042.1\|106774_107968_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	2.5e-117	54.3
WP_009827041.1\|108160_109072_-	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_009827040.1\|109384_110431_-	hypothetical protein	A0A2I7R8M6	Vibrio_phage	5.3e-10	34.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021431

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021431_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021431_1

979777-979888

Orphan

Consensus_repeat	Method
ACCCGGGAGGAGGTGGGCGCC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP021431_1

>merge|NZ_CP021431|1|979777-979888|PILER-CR
CCCGGGAGGAGGTGGGCGCCATCGGCGGTATCATCGGTCCCAACCCGGGAGGAGGTGGGCGGTCCCGAAACTTGTTTCATAAAGCGGCGGCACCCGGGAGGAGGTGGATGCC

>NZ_CP021431|1|1|979777-979888|PILER-CR
CCCGGGAGGAGGTGGGCGCCA	TCGGCGGTATCATCGGTCCCAA
CCCGGGAGGAGGTGGGCGGTC	CCGAAACTTGTTTCATAAAGCGGCGGCA
CCCGGGAGGAGGTGGATGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021431.1\|WP_087206545.1\|967448_967838_+\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP021431.1\|WP_087206558.1\|986204_987683_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NZ_CP021431.1\|WP_087206554.1\|981521_982007_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP021431.1\|WP_087206550.1\|976053_978444_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NZ_CP021431.1\|WP_162290750.1\|982534_983065_+\|cell-division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|234728
NZ_CP021431.1\|WP_087206556.1\|983072_984053_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NZ_CP021431.1\|WP_162290715.1\|982263_982641_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021431.1\|WP_087212622.1\|969001_969589_-\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|234873
NZ_CP021431.1\|WP_087212628.1\|978440_979040_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP021431.1\|WP_087206553.1\|980451_981525_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP021431.1\|WP_087206552.1\|979986_980202_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|368980
NZ_CP021431.1\|WP_087212631.1\|984411_986193_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP021431.1\|WP_087206548.1\|971270_974714_-\|pyruvate-carboxylase	unknown	unknown	gnl\|CDD\|237263
NZ_CP021431.1\|WP_087206546.1\|967872_968364_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223812
NZ_CP021431.1\|WP_087206559.1\|987679_989110_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|184501
NZ_CP021431.1\|WP_087206547.1\|968366_969005_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|237290
NZ_CP021431.1\|WP_087212625.1\|969737_970379_+\|imidazoleglycerol-phosphate-dehydratase	unknown	unknown	unknown
NZ_CP021431.1\|WP_087206557.1\|984052_984412_+\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|227749
NZ_CP021431.1\|WP_087206549.1\|974774_975914_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP021431.1\|WP_087206551.1\|979112_979565_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439

Protein	Function_ID	Function_description	E-value
NZ_CP021431.1\|WP_087206545.1\|967448_967838_+\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	3.48555e-23
NZ_CP021431.1\|WP_087206558.1\|986204_987683_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NZ_CP021431.1\|WP_087206554.1\|981521_982007_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.64952e-11
NZ_CP021431.1\|WP_087206550.1\|976053_978444_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP021431.1\|WP_162290750.1\|982534_983065_+\|cell-division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	4.27759e-31
NZ_CP021431.1\|WP_087206556.1\|983072_984053_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	3.47124e-145
NZ_CP021431.1\|WP_087206559.1\|987679_989110_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|184501	PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional.	5.26276e-150
NZ_CP021431.1\|WP_087212622.1\|969001_969589_-\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	6.03908e-124
NZ_CP021431.1\|WP_087212628.1\|978440_979040_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.88933e-27
NZ_CP021431.1\|WP_087206553.1\|980451_981525_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	9.74118e-139
NZ_CP021431.1\|WP_087206552.1\|979986_980202_-\|DUF1127-domain-containing-protein	gnl\|CDD\|368980	pfam06568, DUF1127, Domain of unknown function (DUF1127). This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.	6.68674e-05
NZ_CP021431.1\|WP_087212631.1\|984411_986193_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	4.88429e-130
NZ_CP021431.1\|WP_087206548.1\|971270_974714_-\|pyruvate-carboxylase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	0
NZ_CP021431.1\|WP_087206546.1\|967872_968364_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|223812	COG0741, MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane].	6.19868e-12
NZ_CP021431.1\|WP_087206547.1\|968366_969005_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|237290	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	5.79423e-123
NZ_CP021431.1\|WP_087206557.1\|984052_984412_+\|cell-division-protein-FtsL	gnl\|CDD\|227749	COG5462, COG5462, Predicted secreted (periplasmic) protein [Function unknown].	2.1815e-05
NZ_CP021431.1\|WP_087206549.1\|974774_975914_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	3.3455e-153
NZ_CP021431.1\|WP_087206551.1\|979112_979565_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.84473e-44

>NZ_CP021431.1|WP_087206551.1|979112_979565_+|Lrp/AsnC-family-transcriptional-regulator
MTQSDQINAHILRILSRDGRISNLQLAEQVGLSASACLRRVQDLERSGVIKGYRARLDPAQTGRAYVVYVAVGLSEHTKAAQAGFERAMQGAPQVTECHNVAGAFEYMLRVEVADLPAYKAFHTDILGTVPHVRSITSYMVMGSPKDTRA
>NZ_CP021431.1|WP_087212628.1|978440_979040_-|LysE-family-translocator
MTYEILIALVGFAFASSVTPGPNNVMLMASGANYGLRRTVPHMLGISMGHAFMVFMVGVVLLGVFLAYPALNILLKIVSAAYMLWLAWKIANAVPPEMKQVTGKPFTFLQAAAFQWVNPKAWFMATTAISAYAPQDRGLVLGSLMVAGIFATTNLPAVTIWAWIGVQLRRWLGTARRLRVFNISMALLLVASLWPMLLG
>NZ_CP021431.1|WP_087206550.1|976053_978444_+|UvrD-helicase-domain-containing-protein
MSDYSEDDAFEAAVPLSQRAMARPAMPYLDGLNPAQRQAVETLDGPVLMLAGAGTGKTKALMTRIAHLIFKGRANPDQVLAVTFTNKAAKEMRARLEKEPFGIETPMRWMGTFHSISAKLLRRHAELVGLQSSFTILDSDDQLRLLKQLVVASDLDEKRWPPRMLAGIIDGWKNKALTPDKVPVAESGAFDGRGVDLYAAYQRRLRDLNAVDFGDILLHMVTIFQTHPDVLHQYQTRFRYILVDEYQDTNVAQYLWLRLLAAGHKNICCVGDDDQSIYGWRGAEVGNILRFEADFPGAHVVRLEENYRSTPHILAAASGVIAANKGRLGKTLFTSVKEGEKVRLIGHWDGEEEARWIGEEIEASQRGTRGMAPLGLDNMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEIRDAMAYFRLAVSPADDLAFERIVNTPKRGLGDKAVQTIQRTARANDVPLVEGARLVCQGRLLGGKGLKELTELVAGLDRWHAQVRAEADTHVELAEMILDESGYTGFWQNDKTPEAPGRLENLKELVKALENFENLQGFLEHVSLIMDNETEEQGEKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGLKGLEEERRLAYVGITRAEELCTISFAANRRVYGQWQSQMPSRFIDELPADHVEVLTPPGLYGGGYGAAGMAASASPAIMGAAGSDLHQKAHDADVYNSPGWRRLQTRSQQRGMAMPSEARNMTIDATAISAFCVDERVFHQKFGYGNVLAIEGDKLEIAFDKAGTKHVVGRFIVSADAADDVPF
>NZ_CP021431.1|WP_087206549.1|974774_975914_-|alpha-hydroxy-acid-oxidizing-protein
MNAHARYPAISDLKTRARARIPHFVWEYLDSATGVEATQKRNRTALDQVLLTPSILHGEFTPDLSTNLLGRDYPLPIGIAPLGMSGLIWPGAEQMLARMAAREAIPYTISTVASQLPEDVGPHAGDQGWFQLYPPRDPVIRDDILNRAKGAGFHTLVLTVDVPVASRRERQTRGGLTQPPKLTPRLALQAARCPAWLMGIRRTGMPRLRLMESYSQVKGTLPSTQHIGYLLRTSPDWDYFKALRDAWDGPLVVKGVGRADDAARLTDEGADAIWVSNHAGRQFDGGPASIETLPAIRAATPLPVIFDSGIEGGLDVLRALALGADFVMLGRAFHYGLAAMGEPGAAHVLDILRQDMISNMGQLGARHLKDLPACLRQTP
>NZ_CP021431.1|WP_087206548.1|971270_974714_-|pyruvate-carboxylase
MADFKKILIANRGEIAIRIMRAANEMGKKTVAVFAEEDKLGLHRFKADEAYRIGEGMGPVAAYLSIDEIIRVAKMSGADAIHPGYGLLSENPDFVDACTANGITFIGPKAQTMRQLGDKASARRVAMAAGVPVIPATDVLGDDMDAIRQQAAEVGYPLMLKASWGGGGRGMRPIMSEKELEEKVREGRREAEAAFGNGEGYLEKMIMRARHVEVQILGDSHGQIYHLWERDCSVQRRNQKVVERAPAPYLSGTQREQLCNLGKKICAHVNYECAGTVEFLMDMDSGEFYFIEVNPRVQVEHTVTEEVTGIDIVRAQILIAEGKSLVEATGCASQYDVKLDGHALQCRVTTEDPQNNFIPDYGRIQMYRSATGPGIRLDGGTAYSGAVITRYYDSLLTKVTARAPTPEMAIARMDRALREFRIRGVSTNIAFVENLLKHPTFLNNEYHTKFIDETPDLFNFTKRRDRATKILTYIADITVNGHPETASRPRPAAEIRLPRPPVKPTSNLTPGTRNILDEQGPAAVAQWMRDQKQVLITDTTMRDGHQSLLATRMRSIDMINAAPAYAAKMHGLFSVECWGGATFDVAYRFLQECPWQRLRDIRAAMPNIMTQMLLRASNGVGYTNYPDNVVQSFVAQAAKSGVDVFRVFDSLNWVDNMRIAMDAVIDANKVCEGTICYTGDLLDPARSKYDLKYYIGMAKELEAAGAHVLGLKDMAGLLKPAAASVLIKALKDEIGLPVHFHTHDTSGAAIATVLAASAAGVDCIDAAMDSFSGNTSQPTLGSIVEALRGTDRDTGLDVAAIREISNYFEQVRAHYAAFESGLQAPASEVYLHEMPGGQFTNLKAQARSLGLEDRWHEVAQTYADVNQMFGDIVKVTPSSKVVGDMALMMVSQGLTRAQVEDPKADVSFPDSVIDMMRGNLGQPPGGWPAALQKKILKGEKAQTDRPGKSLPPVDLAKTKAELQAKFEDVIIDDEDLNGYLMYPKVFLDYTARHEIYGPVRTLPTRTFFYGMEPGEEIAAEIDPGKTLEIRMQAVADMNEDGEVKVFFELNGQPRTIRVMNRLAAADKVQRPKATLGNAAHIGAPMPGVVASVAAVAGKAVKAGDLLLTIEAMKMETGIHAERDAVIKAVHVQPGSQIDAKDLLVELE
>NZ_CP021431.1|WP_087212625.1|969737_970379_+|imidazoleglycerol-phosphate-dehydratase
MKAMILRDDAADAVQTAHILVSKGFQTLCVTNRDIAQAMIRADVIDLIVMDERVGTQLTHTLALSAERRNPYVSTIIMTDEGRQMTDDLYGLIPSLYALIGTRTETNLMGQIFVSAMANADEIARRIDRQLAADAADMAPDSDDDALDALDDAAAFWDDDDDDTADAAFAMPALHDIAAEARRSWGDYADIRPHPVLNPPAMPPRDGAIKAFA
>NZ_CP021431.1|WP_087212622.1|969001_969589_-|imidazoleglycerol-phosphate-dehydratase-HisB
MRTATITRKTAETDITVTINLDGSGIYDNVTGVGFFDHMLDQLARHALIDMTIRATGDLHIDDHHTVEDVGIALGQALTQALGDKRGIRRYGSCHLAMDDAQLRAALDLSGRPYLICNLDLPFGKIGSFDTELVREFFQALSTHGGITLHIDRLHGFNAHHITEAAFKAVARALRDAVETDPRKSDAIPSTKGSL
>NZ_CP021431.1|WP_087206547.1|968366_969005_-|imidazole-glycerol-phosphate-synthase-subunit-HisH
MTTALVDYDSGNLHSAQKAFERMAAEVGAGPIIVTGDPDVVARADRIVLPGDGAFPHCRSQLYAHSGLAEAITESVTRRAVPFFGICVGMQMLATTGHEHADTPGFGWIAGDIRRITPADPALKVPHMGWNDLVIDNPHPVLDGIATGEHAYFVHSYAMQVSNPAERLAHVDYGGDVTAIIGRDNIIGTQFHPEKSQHAGLRMIANFLRWRP
>NZ_CP021431.1|WP_087206546.1|967872_968364_-|lytic-transglycosylase-domain-containing-protein
MTNQTLCRRALLLGAGAALAACARGGDAGVSRADTSAIPLHPNETPELRALINQYADIHDIPVTLLHRVIIRESTHNPAARNGPYYGLMQILPQTARSMGFSGEPRDLLDAETNLRYAGRYLRGAWLLSDGDEATAVRWYARGYYYEAKRRNMLVETGLRAPA
>NZ_CP021431.1|WP_087206545.1|967448_967838_+|DUF2147-domain-containing-protein
MKHLILAAAAAFALAGGASAQDAAIGTWQTEVDDGAFAYITIAPCGTAVCGAIARTFNSEGEYDSPNLGRQIVIDMAPNGDGTYNGQVWRPSNDRIYVGKMDVAGDALRLRGCVAGGLICASQNWVRIE
>NZ_CP021431.1|WP_087206552.1|979986_980202_-|DUF1127-domain-containing-protein
MTSFNITLPASIPFMDRLSGVHATLSDKMAKRKVFLTTLRELQSLSNRDLADLGLSRAALRGIAMEAAYGK
>NZ_CP021431.1|WP_087206553.1|980451_981525_+|Mrp/NBP35-family-ATP-binding-protein
MAATRDTIMTALARIALPEGGDLVGRDMIRALTIDAGKVSFVIEAESPAAAARLDGLRRAAEQVVLALPGVDSVTAVLTAHGPAPKPAEPPQLKIGRHPTPQVGPAKVSGVDRILAIGSGKGGVGKSTVSSNLAVALARQGRRVGLLDADIYGPSQPRMMGVNKRPGSPDGKTIIPLQAHGVTMMSIGLMMDPDKAVVWRGPMLMGALQQMLGQVAWGELDVLLVDLPPGTGDVQLTLCQRAELTGAIVVSTPQDVALLDARKALDMFNTLNTPVLGLIENMSTYICPNCGHEAHIFGHGGVAAEADKIGVPFLAALPIDLDTRLAGDAGTPIAAGSSPMAEAYAAIARRLVAGGMA
>NZ_CP021431.1|WP_087206554.1|981521_982007_+|GNAT-family-N-acetyltransferase
MIIRLATKADFPALWPILRDVFRAGTTYAVDPAISRDAAYDYWMQQPAATYVALADDAVVGTYYLRTNQPGGGAHICNCGYIVAPAARGQGLAAQMCLHSQDQARAMGYLAMQFNFVLASNAGALRLWQRLGFATIGTIPDAFRHPEQGFVAAHVMHKRLT
>NZ_CP021431.1|WP_162290715.1|982263_982641_+|hypothetical-protein
MKSQKMLDHSIARWQNDCTVMTDKTSKGQLKNPNRQKQVSYRLRHHFKNDPARERADIPPGGTRSRTFPAMGRGRRIVQWQQHNPPFSHPDAMSGRQGEAEGVGTEFHGRTHPKGGQQGAHVDPG
>NZ_CP021431.1|WP_162290750.1|982534_983065_+|cell-division/cell-wall-cluster-transcriptional-repressor-MraZ
MRCPGDKVRPRALELNFTGEHTQKVDSKGRMSIPADFRRVLESGDPEWTPDRTPRMYLLYGDHLKNQLQGYSVAEFGKVVAQINALPRGSERKQILSRLIIGQSIRLDVDKDGRTVMPIKQRQKLGITDGELTFSGLGDHFEIWKAESYDSDVSSTLTAYLADKPEGYDPLILLDG
>NZ_CP021431.1|WP_087206556.1|983072_984053_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MSAAADQTPHIPVLIRPLIGAVSPVSGRWLDGTFGNGGYTRALLAAGADQVIAVDRDPLAFQMAADWVADYGDRIVMQEGVFSQLDTYAQDLDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMSQSGLSAADLCNTADEAELADIIYLYGEERASRRIAKAIVAARPVTTTGQLAKIVESCLPRAKPNQSHPATRSFQALRIAVNNEYGELAEGLMAAERALKPGGQLAVVTFHSVEDRMVKRFLQARSGNIANANRYAPETAQITPAFRIEKRKAIGPDDQELAENPRSRSAKLRVAIRTDAPAQSLDPADLGMPMMRKKGGR
>NZ_CP021431.1|WP_087206557.1|984052_984412_+|cell-division-protein-FtsL
MRGFLFVFAAVAVIASAFWAYQENYTTQAAVREVRGLYTEIGAAHDRLQMLRAEWAYLNRPDRLADLADLNFDRLGLLSLRPEAFGQVDQIIYPIPPILPITDPIEISNDTLDLDEEPL
>NZ_CP021431.1|WP_087212631.1|984411_986193_+|penicillin-binding-protein-2
MRTPLRPLARILKARETGENPDMIEAENRARRHAAAQDKARSRAEGRLLLLGLMFFCAFIVIAGRMGTLASSVPEEPRAAAEGNPIIGQRADIVDRNGRLLATNLDTFSLYAHPRQMIDPARTASQLAAIFPEMDADRLLANFTGERRFLWLRRQMSPEQMQAVHDIGSPGLLFGPREMRLYPNGSLAAHILGGARYGREGVSSAEVIGVAGVERQFDTFLRDPANEGAPLQLSIDLSIQAATERVLAGGMALMNAKGATAVLMDIHSGEIIAMASLPDFDPNNRPQIATTGDQSDSPLFNRAVQGVYELGSVFKIFTVAQAMELGLVTADTLIDTTNPLTWGRFRIRDFRNYGPQNSVTNVIVKSSNVGTARIAMQIGADRQRAFLDQLGLLRATSVEMIEAPTGTPLLPRNWSEISTMTISYGHGLSSSPVHLAAAYAAMVNGGTRVEPTLLRNPDPQPGPRVISAAVSRAMVDMLRDTVTQGTASMGDVAGYQVGGKTGTADKPRAAGGGYYEDKVISTFAAVFPASDPQYVLITTLDEPVETSGSEPRRTAGWTAVPVAAEIIRRTAPLLGLRPQMDMDEAVGVTLTSN
>NZ_CP021431.1|WP_087206558.1|986204_987683_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MTTLTALGLTAAQGRDATITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALRMGAAAVLTDAAGARIAADVLAASDAALIVAEDPRQTLAQTASLWFGAHPGTVVAVTGTNGKTSVSSFCRQIWEAMGLAGVNLGTTGVEGAWAYPLKHTTPEPITLHRVLAEATGQGVTHVAMEASSHGLDQRRLDGVVLAAAGFTNFTQDHLDYHGTFEAYFAAKMGLFTRVLAEDGVAVVNLDDPKGPVVAALCTQRGQEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRPHHARLALIGGFQAENVLLAAGLVIAAGADPLEVFAALPHLGTVRGRMELAATRANGAAVFVDYAHTPDAVETALKALRPHVMGRIVAIIGAGGDRDSTKRPLMGAAAAEFADSVIVTDDNPRSEDPASIRAAVLAGAQGCDSLSEVADRAEAILRGIDMLQPGDALLIAGKGHESGQIIGDTVMPFDDVEQASVAVAALEGRI
>NZ_CP021431.1|WP_087206559.1|987679_989110_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MSALWTAADAATATGGATSGDWTATGVSIDTRSLQKGDLFVALTDQRDGHDFVAMALEKGAAAALVSRRPDDVPADAPLLIVPDVLAGLEALGIAARARSTAKIAAITGSVGKTSTKEMLRTVLGRQGKCHAAEASYNNHWGVPLTLARMPADADFAVIEIGMSNPGEITPLSRMARPHVAMVTTVAAAHLASFENLAGIAREKATIVDGLEPGGIAVLNGDVETTAILQDRARQIGAQIVLFGENSGAWRVNDLRIGRDVTVIGAGSPGHDYLFKLSVPGRHFGLNAVGVLAVVAALGADPVAASLDLALWVPPAGRGTREILQLDPANEFETLDLMDDAFNANPTSLAAALEVIAAGQPRDGVGRIVKGRRVAILGDMLELGSEEVAMHAAMAQNPHLQQLDLIHCAGPLMRHLWEALPQGKRGQWAATAAELAAQATRLVDTGDVVLVKGSKGSKVSLVVDAIRKLGHRRGDE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021431_1	1.1\|979798\|22\|NZ_CP021431\|PILER-CR	979798-979819	22	FN594518	Pseudomonas phage phi-2, complete genome, isolated from Pseudomonas fluorescens SBW25	39236-39257	2	0.909
NZ_CP021431_1	1.1\|979798\|22\|NZ_CP021431\|PILER-CR	979798-979819	22	NC_013638	Pseudomonas phage phi-2, complete genome	39236-39257	2	0.909

1. spacer 1.1|979798|22|NZ_CP021431|PILER-CR matches to FN594518 (Pseudomonas phage phi-2, complete genome, isolated from Pseudomonas fluorescens SBW25) position: , mismatch: 2, identity: 0.909

atcggcggtatcatcggtccca	CRISPR spacer
atcggcggtatcatcggtccgt	Protospacer
********************

2. spacer 1.1|979798|22|NZ_CP021431|PILER-CR matches to NC_013638 (Pseudomonas phage phi-2, complete genome) position: , mismatch: 2, identity: 0.909

atcggcggtatcatcggtccca	CRISPR spacer
atcggcggtatcatcggtccgt	Protospacer
********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

53183 : 103473

Pneumococcus_phage(18.18%)

integrase,transposase

attL 47298:47315|attR 109404:109421

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
47298:47315	attL	NA	NA	NA	NA
WP_087205670.1\|53183_54359_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_087205672.1\|54807_56817_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	8.0e-15	25.7
WP_087205673.1\|57010_57319_+	hypothetical protein	NA	NA	NA	NA
WP_012187142.1\|57624_58497_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	6.8e-27	31.3
WP_012187141.1\|58509_59712_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_087212271.1\|60410_61520_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	1.4e-37	39.0
WP_087212272.1\|61540_61834_-	Dabb family protein	NA	NA	NA	NA
WP_087205675.1\|62018_62978_-	biotin synthase BioB	NA	NA	NA	NA
WP_087205676.1\|62982_63540_-	BioY family transporter	NA	NA	NA	NA
WP_087205678.1\|63628_64228_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_087205681.1\|64365_65223_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_087205683.1\|65219_66047_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
WP_087205685.1\|67296_67587_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_087205687.1\|67828_69631_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_087205689.1\|69627_70596_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_087205692.1\|70564_70762_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_087205694.1\|70763_71531_+	thiazole synthase	NA	NA	NA	NA
WP_087212275.1\|71530_72124_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_087205696.1\|72120_73089_+	thiamine biosynthesis protein ThiF	NA	NA	NA	NA
WP_087205698.1\|73085_73814_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_087205701.1\|74115_74796_+	5,6-dimethylbenzimidazole synthase	NA	NA	NA	NA
WP_087205703.1\|74803_75271_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	4.7e-27	51.2
WP_157898295.1\|75286_76024_-	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	8.8e-36	38.8
WP_087205707.1\|76002_76359_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_087205709.1\|76358_77057_-	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	3.5e-50	49.1
WP_087212278.1\|77345_77978_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF93	Clostridium_phage	2.5e-07	28.0
WP_087205710.1\|78288_79053_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_087205713.1\|79024_81826_-	AMP-binding protein	NA	NA	NA	NA
WP_087205715.1\|82207_83056_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_087205717.1\|83052_84618_-	L-aspartate oxidase	M1GXT4	Acanthocystis_turfacea_Chlorella_virus	1.1e-11	26.4
WP_087205719.1\|84623_85673_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_087205721.1\|85868_86099_-	hypothetical protein	NA	NA	NA	NA
WP_087205722.1\|86097_86985_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	5.4e-24	30.1
WP_087205724.1\|87637_88087_-	DUF411 domain-containing protein	NA	NA	NA	NA
WP_087205726.1\|88127_89519_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_087205728.1\|89515_90466_-	copper-binding protein	NA	NA	NA	NA
WP_087205730.1\|90472_90832_-	copper resistance protein CopC	NA	NA	NA	NA
WP_087205731.1\|90901_91246_-	copper-binding protein	NA	NA	NA	NA
WP_087205733.1\|91283_94463_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_087205735.1\|94459_96670_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_087205740.1\|97402_97879_+	DUF305 domain-containing protein	NA	NA	NA	NA
WP_087212281.1\|97938_100386_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.9e-75	36.0
WP_087205742.1\|100427_100847_+	cytochrome c	NA	NA	NA	NA
WP_157898087.1\|100887_101493_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_157898088.1\|101560_102121_+	hypothetical protein	NA	NA	NA	NA
WP_087205748.1\|102265_103473_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	5.1e-65	48.9
109404:109421	attR	NA	NA	NA	NA

DBSCAN-SWA_2

107371 : 162586

Burkholderia_virus(20.0%)

integrase,tRNA,transposase

attL 111123:111182|attR 126327:127652

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087205760.1\|107371_108403_+\|transposase	IS110 family transposase	NA	NA	NA	NA
111123:111182	attL	NA	NA	NA	NA
WP_087205762.1\|111172_112406_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.4e-86	61.8
WP_157898090.1\|112410_112668_+	hypothetical protein	NA	NA	NA	NA
WP_087205766.1\|112790_114317_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_087205768.1\|114313_115225_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_087205770.1\|115221_116226_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_087212283.1\|116266_118708_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_087212286.1\|120862_121249_+	hypothetical protein	NA	NA	NA	NA
WP_087205774.1\|121808_122111_+	hypothetical protein	NA	NA	NA	NA
WP_087205775.1\|122235_122964_+	DUF736 family protein	NA	NA	NA	NA
WP_087212290.1\|123479_124649_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_087212295.1\|124716_125166_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_087205762.1\|125101_126336_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.4e-86	61.8
WP_087205777.1\|126589_127666_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
126327:127652	attR	NA	NA	NA	NA
WP_087212298.1\|128106_128562_-	hypothetical protein	A0A223G009	Streptomyces_phage	1.9e-28	53.7
WP_087205779.1\|128564_128984_-	hypothetical protein	NA	NA	NA	NA
WP_157898091.1\|129160_129661_+	hypothetical protein	NA	NA	NA	NA
WP_087205783.1\|129822_130086_+	BrnT family toxin	NA	NA	NA	NA
WP_066009074.1\|130072_130288_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_087205784.1\|130387_132028_+	hypothetical protein	A0A2R2ZGH5	Clostridioides_phage	1.7e-71	33.8
WP_157898092.1\|131982_133584_+	N-6 DNA methylase	Q8V6N5	Halorubrum_phage	6.0e-29	26.8
WP_157898093.1\|133696_134446_+	hypothetical protein	NA	NA	NA	NA
WP_087205790.1\|134750_135005_+	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	4.2e-14	47.6
WP_087205792.1\|135001_135346_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_157898094.1\|135392_135734_-	hypothetical protein	NA	NA	NA	NA
WP_087205794.1\|135726_136404_-	ParA family protein	NA	NA	NA	NA
WP_087212131.1\|136890_137601_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.7e-28	35.7
WP_087205796.1\|138541_139663_-	GDP-mannose 4,6-dehydratase	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	1.3e-128	62.0
WP_087205798.1\|139805_140561_+	DUF2793 domain-containing protein	A0A0K1LM04	Rhodobacter_phage	1.6e-32	37.8
WP_087212301.1\|140859_141426_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_087205800.1\|141425_142961_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_087205802.1\|142984_143857_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_087205804.1\|143875_145300_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_087205806.1\|145312_145750_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_087205808.1\|145810_146830_-	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.6e-43	36.1
WP_087205810.1\|146945_147542_+	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
WP_087205811.1\|147541_148303_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_087205813.1\|148271_149318_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_087205815.1\|149318_149789_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_087205817.1\|149778_150720_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_087205820.1\|150756_151200_-	MaoC family dehydratase	NA	NA	NA	NA
WP_087205823.1\|151285_152161_-	TIGR01459 family HAD-type hydrolase	NA	NA	NA	NA
WP_162290718.1\|152170_153088_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_087205826.1\|153181_153886_+	hypothetical protein	NA	NA	NA	NA
WP_087205828.1\|153891_154881_-	TraB/GumN family protein	NA	NA	NA	NA
WP_087205829.1\|154961_155942_-	hypothetical protein	NA	NA	NA	NA
WP_087205833.1\|156289_156952_+	response regulator transcription factor	NA	NA	NA	NA
WP_087205835.1\|156948_158292_+	sensor histidine kinase	NA	NA	NA	NA
WP_087205837.1\|158354_159332_+	DUF2125 domain-containing protein	NA	NA	NA	NA
WP_087205840.1\|159328_160309_-	TIGR01620 family protein	NA	NA	NA	NA
WP_087205842.1\|160305_161718_-	YcjX family protein	NA	NA	NA	NA
WP_087205844.1\|161812_162586_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_3

847246 : 881733

Synechococcus_phage(16.67%)

integrase,transposase

attL 845743:845802|attR 879765:881786

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
845743:845802	attL	NA	NA	NA	NA
WP_157898120.1\|847246_847711_-\|transposase	transposase	NA	NA	NA	NA
WP_157898121.1\|848173_848446_-	hypothetical protein	NA	NA	NA	NA
WP_157898122.1\|848473_848641_-	hypothetical protein	NA	NA	NA	NA
WP_087206434.1\|849162_849474_+	hypothetical protein	NA	NA	NA	NA
WP_087206435.1\|849610_850288_+	response regulator transcription factor	NA	NA	NA	NA
WP_157898123.1\|850337_850697_+	hypothetical protein	NA	NA	NA	NA
WP_162290721.1\|851898_855210_-	calcium-binding protein	NA	NA	NA	NA
WP_087206437.1\|855713_856076_-	hypothetical protein	NA	NA	NA	NA
WP_087206438.1\|856196_856523_-	hypothetical protein	NA	NA	NA	NA
WP_157898124.1\|857123_857921_-	hypothetical protein	NA	NA	NA	NA
WP_087206440.1\|858040_858832_+	hypothetical protein	NA	NA	NA	NA
WP_087206441.1\|858902_859601_+	ATP-binding protein	NA	NA	NA	NA
WP_087206442.1\|859597_859831_+	hypothetical protein	NA	NA	NA	NA
WP_157898125.1\|859841_860126_+	hypothetical protein	NA	NA	NA	NA
WP_087206444.1\|860122_860851_+	hypothetical protein	NA	NA	NA	NA
WP_157898126.1\|861006_861231_+	hypothetical protein	NA	NA	NA	NA
WP_087206445.1\|861357_861984_+	hypothetical protein	NA	NA	NA	NA
WP_087206446.1\|862436_862895_+	hypothetical protein	NA	NA	NA	NA
WP_087212577.1\|862941_863214_+	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_087206447.1\|863300_863846_+	peroxiredoxin	M1TUY3	Synechococcus_phage	1.2e-37	45.6
WP_157898127.1\|863861_864143_+	hypothetical protein	NA	NA	NA	NA
WP_087206448.1\|864317_864977_+	hypothetical protein	NA	NA	NA	NA
WP_087206449.1\|865071_866055_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_157898128.1\|866139_866322_+	hypothetical protein	NA	NA	NA	NA
WP_087206450.1\|866359_866692_-	H-NS histone family protein	NA	NA	NA	NA
WP_087206451.1\|867058_867625_+\|integrase	tyrosine-type recombinase/integrase	A0A1W6DWU1	Sphingobium_phage	1.8e-17	33.5
WP_087206452.1\|867646_867853_-	30S ribosomal protein S21	M1HLV7	Pelagibacter_phage	3.8e-05	47.6
WP_087206453.1\|867962_869192_-\|integrase	integrase	NA	NA	NA	NA
WP_087212583.1\|870390_871554_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_087206454.1\|871550_872213_+	ANTAR domain-containing protein	NA	NA	NA	NA
WP_157898129.1\|872209_873448_+	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_087206455.1\|873538_874384_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_087206456.1\|874380_875478_+	ABC transporter permease	NA	NA	NA	NA
WP_087206457.1\|875474_876194_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.6e-08	22.0
WP_087206458.1\|876186_876900_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.7e-13	23.9
WP_087206459.1\|876935_877922_+	acetamidase	NA	NA	NA	NA
WP_087206460.1\|877935_878682_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_087206462.1\|879304_880864_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-95	39.6
WP_087206430.1\|880918_881272_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_157898120.1\|881268_881733_-\|transposase	transposase	NA	NA	NA	NA
879765:881786	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1664500 : 1722692

uncultured_Mediterranean_phage(15.38%)

tRNA,tail,protease,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087212861.1\|1664500_1666243_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_087207374.1\|1666293_1667466_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_087212864.1\|1667536_1667863_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_087207376.1\|1667862_1668642_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_087207378.1\|1668674_1669808_-	monooxygenase	NA	NA	NA	NA
WP_087212867.1\|1669809_1670232_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_087207381.1\|1670410_1671250_+	MoxR family ATPase	NA	NA	NA	NA
WP_087207384.1\|1671246_1672641_+	DUF2927 domain-containing protein	NA	NA	NA	NA
WP_087207388.1\|1672862_1674050_+	VWA domain-containing protein	NA	NA	NA	NA
WP_087207391.1\|1674152_1674839_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_087207393.1\|1674835_1675381_-	PIN domain-containing protein	NA	NA	NA	NA
WP_087207395.1\|1675377_1676583_-	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_087207397.1\|1676634_1677201_-	hypothetical protein	NA	NA	NA	NA
WP_087207399.1\|1677372_1679178_+	phosphogluconate dehydratase	NA	NA	NA	NA
WP_087207401.1\|1679259_1679904_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_087207402.1\|1679973_1682175_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.6e-08	62.7
WP_087207405.1\|1682384_1682660_-	hypothetical protein	NA	NA	NA	NA
WP_087207407.1\|1682656_1685416_-	glutamine-synthetase adenylyltransferase	NA	NA	NA	NA
WP_087212870.1\|1685495_1685966_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_087207409.1\|1686076_1686505_+	DUF2852 domain-containing protein	NA	NA	NA	NA
WP_087207412.1\|1686647_1687454_+	arginyltransferase	NA	NA	NA	NA
WP_087207414.1\|1687463_1689818_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_087207417.1\|1689833_1690778_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA
WP_087207419.1\|1690876_1691959_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_087207420.1\|1692143_1693562_+	histidine kinase	NA	NA	NA	NA
WP_087207422.1\|1693558_1694188_+	response regulator transcription factor	NA	NA	NA	NA
WP_087207424.1\|1694240_1695314_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_087207426.1\|1695630_1696473_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_087212873.1\|1696572_1697490_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_087207428.1\|1697731_1699483_+	acetolactate synthase 3 large subunit	G8DDL3	Micromonas_pusilla_virus	6.7e-50	28.5
WP_087207430.1\|1699514_1700078_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_087207433.1\|1700224_1700455_-	hypothetical protein	NA	NA	NA	NA
WP_087207436.1\|1700600_1701539_+	nucleoside hydrolase	NA	NA	NA	NA
WP_087207438.1\|1701535_1702930_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	7.0e-50	38.7
WP_087207441.1\|1703004_1703550_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.7e-34	54.2
WP_087207444.1\|1703542_1704049_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.9e-43	58.1
WP_087212877.1\|1704178_1705354_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_087207446.1\|1705503_1706433_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_087212881.1\|1706573_1706822_+	septum formation initiator family protein	NA	NA	NA	NA
WP_087212883.1\|1707003_1708014_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	A0A0F7LBI3	uncultured_marine_virus	1.7e-05	25.9
WP_087207448.1\|1708017_1709406_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
WP_087207450.1\|1709418_1710750_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_087207453.1\|1710837_1711647_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_087207455.1\|1711612_1711996_-	hypothetical protein	NA	NA	NA	NA
WP_087207457.1\|1711992_1715892_-	host specificity protein	A0A0K1Y6G6	Rhodobacter_phage	7.5e-227	39.7
WP_087207459.1\|1715893_1716328_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	4.4e-27	48.2
WP_087207461.1\|1716324_1717206_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	1.0e-54	39.7
WP_087207463.1\|1717202_1717832_-	DUF2460 domain-containing protein	A0A0K1LLZ8	Rhodobacter_phage	7.7e-49	48.1
WP_087207465.1\|1717843_1718503_-\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	6.5e-14	32.0
WP_087207467.1\|1718489_1718699_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_087207468.1\|1718695_1719010_-	gene transfer agent family protein	NA	NA	NA	NA
WP_087207470.1\|1719009_1719426_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_087207472.1\|1719451_1719865_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_087207474.1\|1719861_1720200_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_087207476.1\|1720196_1720790_-	hypothetical protein	NA	NA	NA	NA
WP_087207478.1\|1720946_1722137_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	2.0e-66	40.5
WP_087207480.1\|1722161_1722692_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	4.5e-34	49.7

DBSCAN-SWA_5

2349028 : 2390298

Ralstonia_phage(30.0%)

integrase,tRNA,transposase

attL 2388425:2388443|attR 2394788:2394806

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087208595.1\|2349028_2349880_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.7e-70	52.7
WP_087213132.1\|2349970_2350507_+	DUF3833 domain-containing protein	NA	NA	NA	NA
WP_087208598.1\|2350562_2350784_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_087208600.1\|2350780_2351173_-	ribonuclease P protein component	NA	NA	NA	NA
WP_007204042.1\|2351189_2351324_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_087208602.1\|2351635_2353054_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_087208604.1\|2353069_2354470_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	7.8e-09	24.0
WP_087208606.1\|2355461_2355785_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_087208608.1\|2355765_2356041_-	BrnT family toxin	K4NX81	Burkholderia_phage	1.6e-11	50.0
WP_087208610.1\|2356200_2357406_-\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	3.3e-16	26.5
WP_087208612.1\|2358108_2360412_+	hypothetical protein	NA	NA	NA	NA
WP_087208614.1\|2360646_2361522_+	SapC family protein	NA	NA	NA	NA
WP_087208615.1\|2361584_2361788_+	hypothetical protein	NA	NA	NA	NA
WP_087208617.1\|2361833_2362031_+	hypothetical protein	NA	NA	NA	NA
WP_087208619.1\|2362035_2362314_+	hypothetical protein	NA	NA	NA	NA
WP_087208621.1\|2362769_2364044_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	3.3e-99	47.8
WP_157898196.1\|2364040_2364691_+	hypothetical protein	NA	NA	NA	NA
WP_087208623.1\|2364774_2364984_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_087208625.1\|2364980_2365517_+	hypothetical protein	W6E8P3	Rhizobium_phage	4.8e-07	37.3
WP_087208627.1\|2365518_2367393_+	hypothetical protein	A0A2R4A2E4	Microbacterium_phage	9.3e-66	33.5
WP_087208629.1\|2367594_2368101_+	hypothetical protein	NA	NA	NA	NA
WP_157898197.1\|2368143_2368854_-	hypothetical protein	NA	NA	NA	NA
WP_087208634.1\|2369027_2369309_-	hypothetical protein	NA	NA	NA	NA
WP_087208636.1\|2369313_2369511_-	hypothetical protein	NA	NA	NA	NA
WP_087208639.1\|2369556_2369760_-	hypothetical protein	NA	NA	NA	NA
WP_087208641.1\|2369822_2370698_-	SapC family protein	NA	NA	NA	NA
WP_087208643.1\|2370921_2372928_-	calcium-binding protein	NA	NA	NA	NA
WP_087208646.1\|2373143_2373506_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_087208648.1\|2373563_2374769_+\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	3.8e-36	29.3
WP_087208650.1\|2374850_2375237_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_087208653.1\|2375233_2375473_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_162290728.1\|2375572_2375782_+	hypothetical protein	NA	NA	NA	NA
WP_087208069.1\|2375904_2377290_+\|transposase	transposase	NA	NA	NA	NA
WP_087208655.1\|2377747_2379178_-	hypothetical protein	NA	NA	NA	NA
WP_157898198.1\|2379596_2380307_-	hypothetical protein	NA	NA	NA	NA
WP_087208659.1\|2380467_2380749_-	hypothetical protein	NA	NA	NA	NA
WP_087208660.1\|2380753_2380951_-	hypothetical protein	NA	NA	NA	NA
WP_087208662.1\|2381001_2381205_-	hypothetical protein	NA	NA	NA	NA
WP_087208664.1\|2381267_2382149_-	SapC family protein	NA	NA	NA	NA
WP_087208666.1\|2382223_2382889_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_162290729.1\|2382893_2384102_-	hypothetical protein	NA	NA	NA	NA
WP_087208671.1\|2384023_2384449_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_087208673.1\|2384756_2387042_-	hypothetical protein	NA	NA	NA	NA
WP_087208676.1\|2387238_2388393_+\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	1.7e-25	27.0
2388425:2388443	attL	NA	NA	NA	NA
WP_087208678.1\|2388612_2388852_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_087208680.1\|2388851_2389154_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_087208681.1\|2389188_2389668_+	hypothetical protein	NA	NA	NA	NA
WP_087213136.1\|2389725_2390298_-\|integrase	site-specific integrase	A0A1W6DWU1	Sphingobium_phage	7.6e-11	31.8
2394788:2394806	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2494860 : 2568273

Acidithiobacillus_phage(15.38%)

integrase,tail,portal,transposase,capsid,head,terminase

attL 2498146:2498162|attR 2524198:2524214

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157898120.1\|2494860_2495325_+\|transposase	transposase	NA	NA	NA	NA
WP_087206430.1\|2495321_2495675_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_087206462.1\|2495729_2497289_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-95	39.6
2498146:2498162	attL	NA	NA	NA	NA
WP_087208858.1\|2498164_2499889_-	PAS domain-containing protein	NA	NA	NA	NA
WP_157898213.1\|2500248_2500422_-	hypothetical protein	NA	NA	NA	NA
WP_087213159.1\|2500968_2501382_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_087208860.1\|2501906_2503733_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	8.3e-27	24.6
WP_157898214.1\|2503825_2504140_-	hypothetical protein	NA	NA	NA	NA
WP_087208865.1\|2505129_2505675_+	hypothetical protein	NA	NA	NA	NA
WP_157898215.1\|2505839_2506412_+	hypothetical protein	NA	NA	NA	NA
WP_162290730.1\|2506458_2508720_+	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	1.6e-27	31.2
WP_087208870.1\|2509190_2510909_+	recombinase family protein	R9TP69	Rhizobium_phage	9.1e-84	38.0
WP_087213162.1\|2511246_2511672_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_087208871.1\|2511683_2512412_-	DUF1499 domain-containing protein	NA	NA	NA	NA
WP_087208873.1\|2512404_2513715_-	MFS transporter	NA	NA	NA	NA
WP_087208875.1\|2513711_2514566_-	sterol desaturase family protein	NA	NA	NA	NA
WP_087208877.1\|2514654_2515317_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_157898216.1\|2515470_2516463_-	WYL domain-containing protein	NA	NA	NA	NA
WP_087208881.1\|2516700_2517297_+	hypothetical protein	NA	NA	NA	NA
WP_087208883.1\|2517311_2518577_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	2.3e-28	29.8
WP_087208887.1\|2519413_2519677_+	hypothetical protein	NA	NA	NA	NA
WP_087208889.1\|2519673_2520069_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_087208891.1\|2520065_2521076_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_087208893.1\|2521872_2522250_-	hypothetical protein	NA	NA	NA	NA
WP_087208895.1\|2522233_2522857_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_087208897.1\|2522953_2523451_+	cytochrome b	NA	NA	NA	NA
WP_087208899.1\|2523455_2524754_+	hypothetical protein	NA	NA	NA	NA
2524198:2524214	attR	NA	NA	NA	NA
WP_087208901.1\|2524750_2527849_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_162290731.1\|2528423_2528651_-	hypothetical protein	NA	NA	NA	NA
WP_087208903.1\|2528814_2529330_+	hypothetical protein	A0A2K5B286	Erysipelothrix_phage	5.4e-24	37.5
WP_087208905.1\|2530397_2531744_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_087208907.1\|2531810_2533106_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_087208909.1\|2533102_2533930_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_087208911.1\|2533929_2534973_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-26	34.6
WP_087208913.1\|2534969_2536388_+	hypothetical protein	A0A2H4PGQ5	Escherichia_phage	5.3e-13	30.3
WP_157898219.1\|2536392_2537400_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_087208916.1\|2537389_2538151_+	inositol monophosphatase	NA	NA	NA	NA
WP_087208918.1\|2539423_2540686_+	site-specific DNA-methyltransferase	A0A0A8ILE7	Aurantimonas_phage	1.4e-121	53.0
WP_087213167.1\|2540854_2541457_+	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_087208920.1\|2541474_2542032_-	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	2.5e-11	46.0
WP_087208922.1\|2542072_2542351_-	hypothetical protein	NA	NA	NA	NA
WP_087208925.1\|2542361_2542544_-	hypothetical protein	NA	NA	NA	NA
WP_087213171.1\|2542666_2543236_+	hypothetical protein	NA	NA	NA	NA
WP_087208927.1\|2543183_2545223_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	4.7e-212	58.9
WP_087208929.1\|2545223_2545520_-	plasmid maintenance protein CcdB	NA	NA	NA	NA
WP_087213174.1\|2545519_2545765_-	hypothetical protein	NA	NA	NA	NA
WP_087208931.1\|2545825_2546035_+	hypothetical protein	K4HZB1	Acidithiobacillus_phage	9.2e-07	47.1
WP_087208933.1\|2546034_2547543_+\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	5.7e-183	67.1
WP_087208935.1\|2547542_2548973_+	serine peptidase	A0A068CE01	Rhizobium_phage	2.5e-63	48.5
WP_087208937.1\|2549071_2549452_+\|head	head decoration protein	K4ICP8	Acidithiobacillus_phage	7.2e-26	54.0
WP_087208939.1\|2549578_2550601_+\|capsid	major capsid protein	K4I3Z3	Acidithiobacillus_phage	1.6e-99	55.1
WP_087208941.1\|2550613_2550955_+	hypothetical protein	NA	NA	NA	NA
WP_087208943.1\|2551177_2551375_+	hypothetical protein	NA	NA	NA	NA
WP_087208945.1\|2551414_2552047_+	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	1.2e-49	51.5
WP_157898220.1\|2552551_2553121_+	hypothetical protein	NA	NA	NA	NA
WP_087208949.1\|2553192_2553618_+	acyl-CoA transferase	G8DH50	Emiliania_huxleyi_virus	6.2e-34	49.6
WP_087208951.1\|2553626_2554013_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_087208954.1\|2554202_2555144_+	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	7.4e-96	56.4
WP_087208957.1\|2555146_2555509_+	hypothetical protein	NA	NA	NA	NA
WP_087208961.1\|2555827_2558269_+\|tail	phage tail tape-measure protein	A0A0U4JEA4	Pseudomonas_phage	9.3e-50	57.3
WP_087208963.1\|2558265_2558865_+	hypothetical protein	NA	NA	NA	NA
WP_087208965.1\|2558864_2559425_+	hypothetical protein	NA	NA	NA	NA
WP_087213178.1\|2559439_2559838_+	hypothetical protein	NA	NA	NA	NA
WP_087208967.1\|2559841_2562436_+	host specificity protein J	W6AQX5	Acinetobacter_phage	1.3e-49	36.1
WP_087208969.1\|2562435_2562666_+	hypothetical protein	A0A1B1IV72	uncultured_Mediterranean_phage	2.5e-05	50.8
WP_087208972.1\|2562662_2562953_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	2.6e-20	58.1
WP_087208974.1\|2562942_2563188_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_087208976.1\|2563285_2563597_+	hypothetical protein	I3UM16	Rhodobacter_phage	3.7e-28	64.8
WP_087213183.1\|2563697_2564504_+	TIGR02594 family protein	A0A1I9KGA3	Aeromonas_phage	8.7e-21	43.8
WP_087213186.1\|2564887_2565928_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_087208978.1\|2566211_2566469_+	hypothetical protein	NA	NA	NA	NA
WP_087208981.1\|2566601_2566955_+	hypothetical protein	NA	NA	NA	NA
WP_087208985.1\|2566951_2567158_+	hypothetical protein	NA	NA	NA	NA
WP_087208988.1\|2567157_2568273_+\|head	head decoration protein	Q71TP5	Escherichia_phage	6.6e-27	48.9

DBSCAN-SWA_7

3050407 : 3116140

Emiliania_huxleyi_virus(18.18%)

integrase,plate,tail,portal,capsid,head,terminase

attL 3048934:3048951|attR 3094909:3094926

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3048934:3048951	attL	NA	NA	NA	NA
WP_087213380.1\|3050407_3051673_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	1.8e-28	29.6
WP_087210223.1\|3052264_3052513_+	DNA-binding protein	NA	NA	NA	NA
WP_087210227.1\|3052509_3052773_+	hypothetical protein	NA	NA	NA	NA
WP_087210229.1\|3052769_3053165_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_087210232.1\|3053161_3054172_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_087210235.1\|3054168_3054861_+	hypothetical protein	G8DGC1	Emiliania_huxleyi_virus	9.7e-37	42.1
WP_087210237.1\|3055041_3055632_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_087210241.1\|3055877_3058457_+	DEAD/DEAH box helicase family protein	Q5YA94	Bacillus_phage	1.6e-31	30.5
WP_157898241.1\|3058237_3058807_+	DUF3427 domain-containing protein	NA	NA	NA	NA
WP_087210248.1\|3058882_3059167_+	hypothetical protein	NA	NA	NA	NA
WP_087213383.1\|3059464_3059755_-	type VI secretion protein	NA	NA	NA	NA
WP_087210250.1\|3059751_3060333_-	hypothetical protein	NA	NA	NA	NA
WP_087210255.1\|3060341_3062261_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_087210258.1\|3062250_3062886_-	phosphotransferase	NA	NA	NA	NA
WP_087210261.1\|3062882_3066320_-	hypothetical protein	NA	NA	NA	NA
WP_087210264.1\|3066312_3067197_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_087210267.1\|3067199_3068522_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_157898242.1\|3068518_3069067_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_157898243.1\|3069069_3069987_-	FHA domain-containing protein	NA	NA	NA	NA
WP_157898244.1\|3069983_3070724_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_087210279.1\|3070710_3073260_-	type VI secretion system ATPase TssH	A0A0A8J958	Klebsiella_phage	1.4e-80	32.3
WP_087210281.1\|3073259_3074237_-	hypothetical protein	NA	NA	NA	NA
WP_087210284.1\|3074233_3076018_-	hypothetical protein	NA	NA	NA	NA
WP_087210287.1\|3076014_3076422_-	hypothetical protein	NA	NA	NA	NA
WP_087210290.1\|3076418_3077825_-	hypothetical protein	NA	NA	NA	NA
WP_087210293.1\|3077834_3079313_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_087210296.1\|3079309_3079816_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_087210298.1\|3079856_3080381_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_087210301.1\|3080438_3081734_-	hypothetical protein	NA	NA	NA	NA
WP_087210305.1\|3081730_3082750_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_087213385.1\|3082742_3084746_-	MFS transporter	NA	NA	NA	NA
WP_087210308.1\|3084793_3085576_-	hypothetical protein	NA	NA	NA	NA
WP_087210311.1\|3085819_3087658_+	hypothetical protein	NA	NA	NA	NA
WP_087210314.1\|3087715_3088390_+	response regulator transcription factor	NA	NA	NA	NA
WP_087210316.1\|3088477_3089152_-	hypothetical protein	NA	NA	NA	NA
WP_157898245.1\|3089573_3089744_+	hypothetical protein	NA	NA	NA	NA
WP_157898246.1\|3089733_3090003_-	hypothetical protein	NA	NA	NA	NA
WP_087210323.1\|3090138_3091401_+	site-specific DNA-methyltransferase	A0A0A8ILE7	Aurantimonas_phage	2.0e-120	53.0
WP_087210326.1\|3091613_3092216_+	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_087210329.1\|3092233_3092791_-	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	1.9e-11	46.0
WP_087210332.1\|3092831_3093248_-	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	6.7e-17	41.8
WP_087210335.1\|3093229_3093511_-	hypothetical protein	NA	NA	NA	NA
WP_087210338.1\|3093524_3093743_-	hypothetical protein	NA	NA	NA	NA
WP_087210341.1\|3093754_3093937_-	hypothetical protein	NA	NA	NA	NA
WP_087210344.1\|3094059_3094629_+	hypothetical protein	NA	NA	NA	NA
WP_157898301.1\|3094672_3096640_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	1.5e-212	59.1
3094909:3094926	attR	NA	NA	NA	NA
WP_087210347.1\|3096640_3096937_-	plasmid maintenance protein CcdB	NA	NA	NA	NA
WP_087213391.1\|3096936_3097182_-	hypothetical protein	NA	NA	NA	NA
WP_087210350.1\|3097242_3097452_+	hypothetical protein	K4HZB1	Acidithiobacillus_phage	2.4e-07	48.6
WP_087210353.1\|3097451_3098960_+\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	2.6e-183	68.0
WP_087210356.1\|3098959_3100456_+	S49 family peptidase	A0A068CE01	Rhizobium_phage	9.1e-64	47.3
WP_087210360.1\|3100554_3100935_+\|head	head decoration protein	K4ICP8	Acidithiobacillus_phage	4.0e-24	53.2
WP_087210363.1\|3101001_3102024_+\|capsid	major capsid protein	K4I3Z3	Acidithiobacillus_phage	2.0e-99	55.1
WP_087210366.1\|3102036_3102381_+	hypothetical protein	NA	NA	NA	NA
WP_157898247.1\|3102654_3102801_+	hypothetical protein	NA	NA	NA	NA
WP_087210372.1\|3102840_3103473_+	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	3.8e-48	51.0
WP_087210374.1\|3103462_3103708_-	acyl carrier protein	NA	NA	NA	NA
WP_157898248.1\|3104018_3104531_+	hypothetical protein	NA	NA	NA	NA
WP_087210380.1\|3104611_3105037_+	acyl-CoA transferase	G8DH50	Emiliania_huxleyi_virus	2.8e-34	49.6
WP_087210383.1\|3105009_3105432_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_087210386.1\|3105621_3106563_+	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	2.1e-95	56.4
WP_087210389.1\|3106565_3106928_+	hypothetical protein	NA	NA	NA	NA
WP_087210392.1\|3107246_3109688_+\|tail	phage tail tape-measure protein	A0A0U4JEA4	Pseudomonas_phage	1.4e-50	57.6
WP_087210395.1\|3109684_3110284_+	hypothetical protein	NA	NA	NA	NA
WP_087210398.1\|3110283_3110844_+	hypothetical protein	NA	NA	NA	NA
WP_157898249.1\|3110846_3111257_+	hypothetical protein	NA	NA	NA	NA
WP_087210402.1\|3111260_3113855_+	host specificity protein J	W6AQX5	Acinetobacter_phage	7.6e-50	37.3
WP_087210405.1\|3113957_3114188_+	hypothetical protein	A0A1B1IV72	uncultured_Mediterranean_phage	3.5e-07	54.2
WP_087210409.1\|3114184_3114475_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.0e-19	57.0
WP_087210412.1\|3114464_3114710_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_087210415.1\|3114807_3115119_+	hypothetical protein	I3UM16	Rhodobacter_phage	2.2e-28	64.8
WP_087213397.1\|3115216_3116140_+	TIGR02594 family protein	I3UM17	Rhodobacter_phage	1.3e-25	44.0

DBSCAN-SWA_8

3156591 : 3207451

Bacillus_virus(18.18%)

integrase,transposase

attL 3190738:3190754|attR 3219272:3219288

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087210494.1\|3156591_3157893_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	2.7e-32	29.8
WP_087210497.1\|3158452_3158710_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_087210499.1\|3158706_3158985_+	hypothetical protein	NA	NA	NA	NA
WP_087210502.1\|3158981_3159413_+	nuclease	NA	NA	NA	NA
WP_087210505.1\|3159409_3160426_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_087210508.1\|3160452_3161100_+	hypothetical protein	NA	NA	NA	NA
WP_087210511.1\|3161308_3162178_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_087210514.1\|3162305_3163337_+	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_087210517.1\|3163406_3164501_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.7e-27	36.3
WP_087210520.1\|3164503_3165412_+	ABC transporter permease	NA	NA	NA	NA
WP_087213407.1\|3165413_3166244_+	ABC transporter permease	NA	NA	NA	NA
WP_087210523.1\|3166245_3167370_+	P1 family peptidase	NA	NA	NA	NA
WP_087210526.1\|3167665_3169051_-\|transposase	IS1182-like element ISRssp12 family transposase	NA	NA	NA	NA
WP_087213411.1\|3169237_3170161_+	EamA family transporter RarD	NA	NA	NA	NA
WP_087210532.1\|3170916_3172179_+	site-specific DNA-methyltransferase	A0A0A8ILE7	Aurantimonas_phage	2.3e-121	52.8
WP_087210537.1\|3172334_3172934_-	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	2.7e-11	33.1
WP_087213417.1\|3173032_3173434_-	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	8.5e-17	39.7
WP_087210540.1\|3173534_3173822_-	hypothetical protein	NA	NA	NA	NA
WP_087210543.1\|3173835_3174057_-	hypothetical protein	NA	NA	NA	NA
WP_087210546.1\|3174067_3174250_-	hypothetical protein	NA	NA	NA	NA
WP_087210549.1\|3174951_3175902_-	agmatinase	NA	NA	NA	NA
WP_087210552.1\|3175914_3176646_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.2e-18	32.9
WP_087213419.1\|3176642_3177404_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_087210555.1\|3177421_3178213_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.8e-34	37.9
WP_087210558.1\|3178212_3179022_-	ABC transporter permease	G3M9Y4	Bacillus_virus	3.5e-30	32.6
WP_087210561.1\|3179084_3180143_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_157898252.1\|3180292_3180916_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_087210567.1\|3180948_3181833_+	polysaccharide deacetylase	NA	NA	NA	NA
WP_087210571.1\|3181829_3182693_+	DMT family transporter	NA	NA	NA	NA
WP_087210573.1\|3183388_3183988_-	short chain dehydrogenase	NA	NA	NA	NA
WP_157898253.1\|3184241_3185453_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_087210581.1\|3185493_3186198_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.3e-15	29.1
WP_087213424.1\|3186187_3186961_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.6e-11	28.7
WP_087210584.1\|3187127_3187880_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_087210587.1\|3187876_3188740_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_087213186.1\|3189287_3190328_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157898254.1\|3190711_3191149_-	MarR family transcriptional regulator	NA	NA	NA	NA
3190738:3190754	attL	NA	NA	NA	NA
WP_087210596.1\|3191274_3193629_+	xanthine dehydrogenase family protein	NA	NA	NA	NA
WP_087210599.1\|3193625_3194450_+	hypothetical protein	NA	NA	NA	NA
WP_087210602.1\|3194446_3195622_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_087210605.1\|3195721_3196279_-	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_087210609.1\|3196275_3199080_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_087210612.1\|3199081_3200062_-	amidohydrolase	NA	NA	NA	NA
WP_087210615.1\|3200180_3200801_-	isochorismatase family protein	NA	NA	NA	NA
WP_087210618.1\|3200817_3201849_-	leucyl aminopeptidase	NA	NA	NA	NA
WP_087210621.1\|3201866_3202655_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_110280944.1\|3202666_3203368_-	Asp/Glu racemase	NA	NA	NA	NA
WP_087213430.1\|3203510_3204209_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_087210625.1\|3204293_3204614_-\|transposase	transposase	S5WIU1	Leptospira_phage	7.5e-08	48.3
WP_087210628.1\|3204627_3204843_-	hypothetical protein	NA	NA	NA	NA
WP_087210631.1\|3204909_3205137_-	hypothetical protein	NA	NA	NA	NA
WP_087210634.1\|3205590_3206595_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_087210637.1\|3206719_3207451_+\|transposase	IS110 family transposase	NA	NA	NA	NA
3219272:3219288	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3675372 : 3690730

Paracoccus_phage(20.0%)

tail,portal,transposase,capsid,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087211827.1\|3675372_3678468_-\|tail	phage tail tape measure protein	F4YXU1	Roseobacter_phage	1.9e-55	31.6
WP_087213590.1\|3678538_3678730_-	hypothetical protein	NA	NA	NA	NA
WP_087213594.1\|3678870_3679221_-	hypothetical protein	NA	NA	NA	NA
WP_087211830.1\|3679217_3679658_-	hypothetical protein	NA	NA	NA	NA
WP_087211832.1\|3679669_3680056_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_087211835.1\|3680058_3680319_-	hypothetical protein	NA	NA	NA	NA
WP_087211837.1\|3680322_3680784_-	hypothetical protein	A0A0U2C0P4	Paracoccus_phage	1.8e-23	39.2
WP_087211841.1\|3680761_3681109_-\|head,tail	head-tail adaptor protein	A0A0U2BXJ0	Paracoccus_phage	4.0e-23	53.5
WP_087211844.1\|3681108_3681678_-	hypothetical protein	NA	NA	NA	NA
WP_087211847.1\|3681713_3682025_-	hypothetical protein	NA	NA	NA	NA
WP_087211851.1\|3682100_3683408_-\|capsid	phage major capsid protein	Q7Y410	Yersinia_phage	3.3e-46	35.9
WP_087211854.1\|3683499_3684414_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.2e-10	28.2
WP_087211857.1\|3684410_3685688_-\|portal	phage portal protein	H9YSG7	environmental_Halophage	4.9e-26	26.8
WP_087211859.1\|3685684_3687352_-\|terminase	terminase	A0A1P8DTK0	Proteus_phage	3.8e-79	33.8
WP_087211864.1\|3687338_3687779_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_087211867.1\|3687919_3688312_-	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	1.5e-21	44.5
WP_087211869.1\|3689058_3690283_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	7.7e-69	50.4
WP_087211872.1\|3690292_3690730_-	glycosyltransferase family 25 protein	A0A1S5NQ44	Burkholderia_phage	9.6e-06	29.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021432

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021431

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection