CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP015864	Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T chromosome 2, complete sequence	1 crisprs	csa3,cas3,WYL	0	0	3
NZ_CP015863	Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T chromosome 1, complete sequence	2 crisprs	cas3,DinG,csa3,RT,cas5f,cas7f,cas6f,csx1,DEDDh	1	1	3
NZ_CP015865	Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015864_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015864_1

1183498-1183744

Orphan

Consensus_repeat	Method
GTCACATTCGACGTATCCCAAT	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP015864_1

>merge|NZ_CP015864|1|1183498-1183744|PILER-CR
GTTACATTCGACGTATCCCAATAACCTATATCTTGGTTAAAGACCTGAGCTCCATAAAACATTCTATCCATATCCATCACATTCGACGTATCCCAATGGCCTATGTCTTGGTTAAAAGCTTCAGCCCACGAAAACATTGAATCCATATAAGTGACGTTCGATGTATCCCAATAGCCTATATCTTGATTAAATGCTTTTGCGCCAACAAACATTTGAGACATGAACGTCACATTCGATGTATCCCAAT

>NZ_CP015864|1|1|1183498-1183744|PILER-CR
GTTACATTCGACGTATCCCAAT	AACCTATATCTTGGTTAAAGACCTGAGCTCCATAAAACATTCTATCCATATCC
ATCACATTCGACGTATCCCAAT	GGCCTATGTCTTGGTTAAAAGCTTCAGCCCACGAAAACATTGAATCCATATAA
GTGACGTTCGATGTATCCCAAT	AGCCTATATCTTGATTAAATGCTTTTGCGCCAACAAACATTTGAGACATGAAC
GTCACATTCGATGTATCCCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015864.1\|WP_005530019.1\|1186763_1186961_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015864.1\|WP_005530014.1\|1184845_1186036_-\|DUF285-domain-containing-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP015864.1\|WP_005529990.1\|1170354_1171074_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239398
NZ_CP015864.1\|WP_032999985.1\|1184047_1184485_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP015864.1\|WP_005530020.1\|1186960_1187659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015864.1\|WP_005529988.1\|1169183_1170287_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP015864.1\|WP_005530005.1\|1181246_1182260_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015864.1\|WP_005529996.1\|1174143_1175232_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP015864.1\|WP_005530024.1\|1188352_1188889_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015864.1\|WP_005530030.1\|1191688_1192291_-\|Hemolysins-related-protein	unknown	unknown	unknown
NZ_CP015864.1\|WP_032999992.1\|1177520_1179098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015864.1\|WP_005530007.1\|1182402_1182537_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180054
NZ_CP015864.1\|WP_005529992.1\|1171655_1172702_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176246
NZ_CP015864.1\|WP_005530028.1\|1189198_1191676_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|372197
NZ_CP015864.1\|WP_005529994.1\|1172723_1173938_+\|OFA-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340911
NZ_CP015864.1\|WP_005530026.1\|1188901_1189189_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015864.1\|WP_005529999.1\|1175403_1177521_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015864.1\|WP_005530017.1\|1186062_1186500_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP015864.1\|WP_005530022.1\|1187649_1188339_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015864.1\|WP_005530003.1\|1179773_1180880_-\|DSD1-family-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143493

Protein	Function_ID	Function_description	E-value
NZ_CP015864.1\|WP_005530017.1\|1186062_1186500_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.45821e-21
NZ_CP015864.1\|WP_005530007.1\|1182402_1182537_-\|hypothetical-protein	gnl\|CDD\|180054	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.	1.29193e-26
NZ_CP015864.1\|WP_005529992.1\|1171655_1172702_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176246	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NZ_CP015864.1\|WP_032999985.1\|1184047_1184485_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	7.37378e-23
NZ_CP015864.1\|WP_005529994.1\|1172723_1173938_+\|OFA-family-MFS-transporter	gnl\|CDD\|340911	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Oxalobacter formigenes oxalate:formate antiporter (OFA or OxlT) and similar proteins. O. formigenes, a commensal found in the gut of animals and humans, plays an important role in clearing dietary oxalate from the intestinal tract, which is carried out by OFA/OxlT, an anion transporter that facilitates the exchange of divalent oxalate with monovalent formate, the product of oxalate decarboxylation. This exchange generates an electrochemical proton gradient and is the source of energy for ATP synthesis in this cell. The OFA-like subfamily belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.07226e-80
NZ_CP015864.1\|WP_005529988.1\|1169183_1170287_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	1.03971e-56
NZ_CP015864.1\|WP_005529990.1\|1170354_1171074_-\|carbonic-anhydrase	gnl\|CDD\|239398	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carbon dioxide or carbonic acid, or in sensing carbon dioxide levels in the environment. Dioscorin is the major storage protein of yam tubers and may play a role as an antioxidant. Tobacco Nectarin may play a role in the maintenace of pH and oxidative balance in nectar. Mollusc nacrein may participate in calcium carbonate crystal formation of the nacreous layer. This subfamily also includes three alpha carbonic anhydrases from Chlamydomonas reinhardtii (CAH 1-3). CAHs1-2 are localized in the periplasmic space. CAH1 faciliates the movement of carbon dioxide across the plasma membrane when the medium is alkaline. CAH3 is localized to the thylakoid lumen and provides CO2 to Rubisco.	7.91084e-103
NZ_CP015864.1\|WP_005529996.1\|1174143_1175232_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.73706e-38
NZ_CP015864.1\|WP_005530014.1\|1184845_1186036_-\|DUF285-domain-containing-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.53369e-49
NZ_CP015864.1\|WP_005530028.1\|1189198_1191676_-\|phage-tail-protein	gnl\|CDD\|372197	pfam12571, DUF3751, Phage tail-collar fibre protein. This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.	2.7254e-32
NZ_CP015864.1\|WP_005530003.1\|1179773_1180880_-\|DSD1-family-PLP-dependent-enzyme	gnl\|CDD\|143493	cd06819, PLPDE_III_LS_D-TA, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exhibit full catalytic activity.	1.3723e-152

>NZ_CP015864.1|WP_005530007.1|1182402_1182537_-|hypothetical-protein
MASLIQSGLDLSPIITHHYKIDDFQEGFDVMRSGMSGKVILDWE
>NZ_CP015864.1|WP_005530005.1|1181246_1182260_+|hypothetical-protein
MRYQSAPVSSEETQETTAQRAARQRQERRAELTYSTDDYKRWNNNKNKTLDERNKEKQEANVSEAATEQKNHIHVGEEREFPDAILSPMPTSRKEMTDATGTRVLPSDLLGSSFNNQCVSAEIVAHQMTSLSPATKKEVEESGELVFSGMQYKHAHGTVGTIEVIDTFAGQQPDQKTSQMAYWVAQGKYLDIPKHPDPHRDHLYVFTPNFSGCSFVVDDWSDDLIRVYHVEGSKEDKQYNDVKDHRNGLINYMSFRDYGFYQKGNTTIKSVNGFAFMRYNTQARHWEIHYQKQEHAPALGRPTTSAKTLFSSEKHSVKVMVSKESRVVETGTIAIKR
>NZ_CP015864.1|WP_005530003.1|1179773_1180880_-|DSD1-family-PLP-dependent-enzyme
MDINQLETPSLFVDIDEMKTNIKAMQQRINDLGLTLRPHTKAHKIPAIAQMQLDAGAQGICVAKLGEAEVMAQGGIKDILITTPIAGQKKIQRLITLHQDHPDARFIQVIDDYYHVVEIEKAASAANLCVELMIEVESGQQRCGVQVGDDLVQLIHAIQSTDGVSYVGLQAYSGHLQHVKGYCSRNEQARSVVVPLFDFITSTLEPQGMKPQIISGGGTGTYAAYQGLGYSEIQAGSYLFMDAAYLAIGDETNATENQQFSPALKVLSTVISQPTPSRTVIDAGMKCLSIDLGMPIVEGSEGVRYQTGGDEHGILHHEEGCEIFELGQQVILLPSHCDTTLNNFDTLYAVQDGKVICQWTIEGRGRSD
>NZ_CP015864.1|WP_032999992.1|1177520_1179098_-|hypothetical-protein
MKILFAIAPLFLSMSVEASVYFGPPDGENIIDIESKDGYLFKVENGIYVQAHSEEFVLGIATLFENLKQTRTGRAIINQNSHYAPLALPNKERALAFHTEGQVDGTIEKIHVVIRPPRGGKQFVTEPLIASPEFVNYQSNGLGVPAVIYFDIDNAVLIPGSSTIIEPSIALGHELIHARDYLTGGLPTGTQRIRHHAPVAGTTHNGEEFTEGEVVEFSLMTREIEATGLSYQKGSTKLKTLTTSRQSSIERRESVMNVWEEALKNKSVSKADYARVKTNIQRLKSEVPVSEYHLSKEFGNEARDMYWPGSMIDYSSTPTDITLKSVKQTTSGVLSSTALSTTKVSEALHNSPQSLLLISTSLIERKNGFPKLDKVLRTALELAIKADRKVILLEGDNFSSLTEVEKRLTVATIEKAADSIKKGNTSSSVIQINADQISNEGRDLLAQSEQVVLISTNDDISALAMSESIAGSSQKLLVNRIVRSDQPNPSVIYANRLRWSKLAERENVTLVANSTLPKSKKCWSL
>NZ_CP015864.1|WP_005529999.1|1175403_1177521_-|hypothetical-protein
MKIKNLILFIGFCVSLNANALETCNLGSETLEEEHEWLARLDYEFESELTDVKEVAALDKIPSLMLPVSDEGMFAEHWAGVTAVIDSKNSQPNSAKRIAQLERVSERQALWQLAKNGGRAFSSVLDIVFFAPWVEDLTRTMWDDSASELHRLSVTAEPIPFVGFAIGYYDYLSTLDNPEKRLNQWLKNGHYSYGQETVLQRLNTASAESIEHQHEQLKQHIIELTKRLASIQLLHYDATYSAKVLELQEVINKMFSAIDIEYASTMLDLYNRPPHVIQKFGEQACINPKLEVREELNNLGVVSSGAINNLRACSYRMLMGNVGQLYGIGKYPHIDKVRGDILAYKQNIIENAVSHIIEWREKIFEIQRNSIDTLVSSTLNSGSIRSYRLYLYQRARRIAIDNFSLSILQRRATEEEQRTGRFLVGEGELICGVYSCQFYEGREVFFDEDSDPLLQKLSEPLDNIDLSSYINERVRRGWTNVELDEPYINLWQQWQNREDLSLSALPYKGNPSLEVIKKDMPELFEIFEKIPSHLSAEQAKPFLFQLIRNRMFKEDIQTAWTKLGDFIFRFQYEQRQHQSLNFLPLQWQQAIWPSQPQGVLFSAFLDKTYMYYSRQPWAQALPYSDEKDVISNWTLYQGATHRYYLTQSVPEDVYLGDQYWREVNEQLSHVLSLPEIRWRPFEHMILMDIWSQITEIESLVEISKS
>NZ_CP015864.1|WP_005529996.1|1174143_1175232_-|diguanylate-cyclase
MKHIIRLLIVAATALLMWMDFKISAVSRIDTLIDFSQSIRNFTSMPNYSSTTQFPFNVPSYVTVHMTKELNALSDMANYKEVSLNPTNRENLANKRETSVLESDEISRVYRVYLENSNVYLTRYDPIVVEPSCVQCHGSVDTAMAEQIEMYGRDDGFNYKVGDIYGLKVASIDVTWFLLRYIGLAVLFGVPVAILIGRYNRKLNVAMNIDALSGAFNKNYYLKTKHTFGSGYFLLVDIDDFKQINDTHGHQYGDMVISQVCQLLKSYCRDSDQLFRFGGEEFALFMHGDVSKLRVEDFLKSTLNEIRQALFGDEQVKLRVTVSIGVCHKADEHQIDDVMSKSDKALYQVKCTGKDNFLFYDE
>NZ_CP015864.1|WP_005529994.1|1172723_1173938_+|OFA-family-MFS-transporter
MINKPFKILLIGLIVNLSIGILYVWGVFSEPLAEALGVDAKHVDGPYQTSVFTFSVSLFLAGVWQDKVGPRIVTILGVFLVGAGLLASGYASTLMELQVTFGCMVGAGMGFAYACIGPCTMKWWPENRKGLVSGLTAGGFAMAALYLAPLSTILIEHFGILDTFKILGIGLLFMIPMASLLVDPPQGYVADEPKEETAESCVDVNIQWLDMLKTPQFYQIWLMFMVSSAAGIMLIGSIGNVSKSIGLTSEEIALSIILLAIFNTAGRVIGGVVFDKIGRAHTLGLIFLLQAVNMIFFTTIETTIPLMIGISVGAMSYGALFGVFPPVTAIDYGLKSYGTNFGILYSAWGVSGFFGGILASISGTTETTYLAFAVLLFFITAMNYLMKPVDKSEIVNRNAANLEY
>NZ_CP015864.1|WP_005529992.1|1171655_1172702_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MKAYVFDGKDTAKLVEREKPEIINQSDVIVKIEKTTICGTDLHILRNNVATFKPGTIMGHEGVGIVESCGDRVNNFRPGDRVIVSCITSCGSCKMCKVSKFGQCLDGGWLLGNEIDGCQAEYVRVPYGDTSLHLVPDDIDTDCLVLLSDIFPTGYEVGVLDGQVQPGCSVAVIGCGPVGLAALMTSKFFSPSEIYAIDNNPHRLQVAQDLGATHAIDNSDGTAVQQILDMTDDVGVDVVIEAIGIPAGWDMSQKLVCPGGNIAVLGVHGKPATINLEDMWKRNFTMTAGMVHTHTIPMLIKQIRAGYFNPKDLISHQFKLSEAEEAYSTFTHASDHESLKVIISNDCS
>NZ_CP015864.1|WP_005529990.1|1170354_1171074_-|carbonic-anhydrase
MRKSLTALGLALLFAGSANAANWGYEGEHGPANWGEFASECAKGQNQSPIDIQSTTEAKLDKLNFDYEGKVMSLLNNGHTLQTSLEGNNTLTVDGKEFTLKQFHFHTPSENHVDGKEYPLEAHFVHADKAGHLAVVAVFFKLGDANPDLAKLLANVPNKDQDVAIKVPFDADALIPSDKEYYRFNGSLTTPPCSEGVRWLVIKETQTISPEQVKAFAKAMGHNNRPIQPLNARMILAQQ
>NZ_CP015864.1|WP_005529988.1|1169183_1170287_+|mechanosensitive-ion-channel-family-protein
MPQWFTELQTYVMANHQDWSSSVLFITIASFFAWVAWRILYSRLEILFKKTSFHWDDLLLEALKTPISTLIWCWPATVSLGIVLQSELGNEFNWLSTLKLILVISILVWVVMRLITNVEDYVLEQKTRDETTVQAVAKVARLFFIVIGVLTVMQAFGLSLSGLLTFGGVGGLVVGLAAKDLLSNFFGGLMIYFDRPFKVGDWIRSPDRQIEGTVERIGWRMTSIRTFDKRPLYVPNSVFSNIVVENPSRMLNRRIFETIGLRYDDADKVPVIIDEVREMLKNHKDIDTRQTLIVNFDAFGASSLNFFIYTFTKTVNWVRYHEVKQDVLLEVMAIIKKHEADIAFPTQTLKLDPIQMAKAQAQEDNGF
>NZ_CP015864.1|WP_032999985.1|1184047_1184485_-|BspA-family-leucine-rich-repeat-surface-protein
MKLRSIISACVLLSCSQAFASEPETVTCESNKPGTVMVQEDELFVVVNDALIRNSDYWQNFLDGNILLCTSHVTDMSDLFAKNKYFNQDISRWDTSRVTNMDRMFSGAKRFDQDLTNWDVKRVSRHADFAKDSGLSEDSLPTFTQ
>NZ_CP015864.1|WP_005530014.1|1184845_1186036_-|DUF285-domain-containing-protein
MKRTITSLLVGATALASQTAFAADISVKCPDQAVNSVMFENGKVYVVVDNALIKNKTLLDNLEQGHIRLCTTQVTDMSRVFYDRVSFNTDISDWDTSNVTNMAWMFYKARVFNQDIGHWDTSNVTDMSSMFSWAHSFNQDIGYWNTSSVQRMDFMFSSAWVFNQDIGYWDTSSVLDMRSVFWNAYAFNQNIGHWDTSNVTSMRDMFRKAESFNQDIGHWDTSRVLDMNAMFWQAYAFNQNIGNWDTSNVEFMQSMFSEAHAFDQKIGNWDTSNVATMNYMFFEAKAFNQDIGDWDTSRVWVMSKMFAGAEKFNQDIGNWYTSHVASMDNMFSGAKVFNQDIGNWNTLSVRDMTEMFSNASAFNQDLTNWNVSRVLGHTDFAKDSALTEEHLPYFVD
>NZ_CP015864.1|WP_005530017.1|1186062_1186500_-|BspA-family-leucine-rich-repeat-surface-protein
MKLRSIISAFALLSCSQTFASEPETVTCESNKPGTVMVQEDELFVVVNDALIRNSDYWQNFLDGNILLCTTHVTDMSDLFAKDQYFNQDISRWDTSRVTNMDRMFSGAKRFDQDLTHWDVKRVSRHIDFAKGSGLSEDSFPPFTQ
>NZ_CP015864.1|WP_005530019.1|1186763_1186961_-|hypothetical-protein
MAISKASLKQKLETELKAQGFVLDGEFAMAGMMAEAIANAVVDEITQNAQVEVSGGSSAGSYKVT
>NZ_CP015864.1|WP_005530020.1|1186960_1187659_-|hypothetical-protein
MDVNTIKRIIFRLFPELTGRWHLPRWGKVVALPELPEEGDLSDRFYPHYSVDVQLLDEKGMEYEDKPPLQAVPLPVPGLGDHAGRLEPPAIGSIVELGFMFGQPDKPFIRCVLPLGFKLPGIKEGESRYQQRKGVYQLVDQEGNFERKTDQADKLECLTQQIKVLEDRIADIGGNHTETVKGNRAIKANNITEDADTIKFNGGKGVCTGASICPFMGKPHVDVSTTVFAGKD
>NZ_CP015864.1|WP_005530022.1|1187649_1188339_-|hypothetical-protein
MAINNKFLCRAYVGKQKTKVKSHRIVFSHNTPGRCELSVEGNPEPNTLIAIDLGWGDDITRVFLGYIERVQPSEKGWSTVFCRELAAILYQPINIILRHPTLMQLLSEVTNKTGLQFVVPEKAYSQTAIPCFFSDGNGYRVIDELAQAFSIDDLFWQQQGNGQIYIGSWADSFWADKPITLPNALMTNHTANKSVKMPAIPKLKPGVVVNGLRLVGVEFEGTEVKLTWT
>NZ_CP015864.1|WP_005530024.1|1188352_1188889_-|hypothetical-protein
MLTLNGAQLPLKSLRISVRQQLAGQDMSGQTSATDQAETGSKGKILTVKGVIPFTKKQLLTNLFSMAEAQDNDARQIYRISNQTAEALKIRQVKFQGVVSADEQDTHRQWSVSFELVEHLSVPERVEQRQPDKPAAQQKVQGIKTPVETGQTEDVPPDTQVELTGVMKVLKSVDNALA
>NZ_CP015864.1|WP_005530026.1|1188901_1189189_-|hypothetical-protein
MALMKEIKFTPEGLSASLNLSEAYVVIDRVDVLKTHSEIYLSIYESKNSRDLGLKKVLDYPVEKFSPELDVNKDIYKLAYEHLKTTQMFSGAIDC
>NZ_CP015864.1|WP_005530028.1|1189198_1191676_-|phage-tail-protein
MTNTTDKSILTAAGKALLAQLNAEEKPLIIDKMIFANVPNRPEFPQPDDVVPTDHVVHQEGVEQRGRLSADSVIYSSTLTSDVGPFDFNWTGAYCSEYGVLVTIDHHALTPKTADEPGVAGNTLVRSVVLEYKDIAEITNITVDASTWQYNATPRMKKMDDDVAQAIIDQNGKDWFIEDGFLVTPQASAFNIKAGAGYVSGNRVMLEFDRNVQVPNKPSFIYVDAHREGTPTGEQVILFDFVITADEKDDYTDANGVKHFVCKVAQVLGDGSVSDLRPEGESASRTWVLDEVKKYSESDTQTKQLVGAEDEIQGVVIDGYSAIKLKKNDEYELWYAWDVPKGVVISFVNNNDYGTAELLARQGDGSNVIFEFVNQRVRNLRTMGYVEGWGADEKALDTYDAHYRAATYCKSKGITLSSNIGLIYNTSKTVDFRDVKSVDYKAQLVGTGNFITLLLGGDSTIEQQYYNQSVHKVNRGGESPAIRIVGSKKSTIRIGEASYVQVWADSSESLGGTQDETSISKIHIQQVRTLEINTNMNPDGENPTNKAWVNSNDFYLQVCDILIVDGIYHHNSNKFHGGNFEAADSKIHFKKGQSNQVKDVRGENDLIVEFDSDTSNNGVITNWTSYPNGFNTAKQIIDNGTNNVVKNVNDLFNMRLVLMAFTSASYKKDTNNNPNMLGLANIDINGPLMSRPAYAMIYKTPLLEISPGSEFFRFYVEGRTVGGVTVKVIGYDESGNLINGKDGDVYFASADNPMARFGQVNNHLDVGSSGQNLFYVMNREAKYIEIECSASAAGVTFKRFCLVATTSNKAGDEYITATAMIPNIS
>NZ_CP015864.1|WP_005530030.1|1191688_1192291_-|Hemolysins-related-protein
MNIPEINLRYWMGRGELAKLARALCNHWEHVKAAFEMPLQQHDPLTAPIALVNILAWQRGVEKLGQEPEELFRTRVAHAYGFARDAGSVSGWEDMFAKLGYPHIAQDERLVNVDWDVISLKIRDGDLTNVPKLVDTVVRQYGRTCRRYQYTSYVEMPLAARSKNIEAQYSASHVKTRINVSMLPNMLNVDCEYYQATVKG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

577041 : 583527

Vibrio_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005531358.1\|577041_578454_-	zona occludens toxin	Q64EV0	Vibrio_phage	7.9e-118	50.2
WP_080639308.1\|578453_578765_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_005531354.1\|578788_580228_-	hypothetical protein	NA	NA	NA	NA
WP_005531352.1\|580354_580567_-	hypothetical protein	R9TRU5	Vibrio_phage	5.1e-05	49.3
WP_005531350.1\|580590_580836_-	hypothetical protein	R9TMT7	Vibrio_phage	6.1e-10	51.8
WP_005531348.1\|580845_581202_-	DUF1293 domain-containing protein	Q783U4	Vibrio_phage	4.3e-57	94.8
WP_005531346.1\|581205_582351_-	hypothetical protein	A0A1W6UG38	Vibrio_phage	2.3e-208	90.3
WP_005531344.1\|582334_582550_-	hypothetical protein	A0A1W6UGD1	Vibrio_phage	7.2e-31	87.3
WP_005531342.1\|582553_582955_-	hypothetical protein	NA	NA	NA	NA
WP_005531340.1\|583158_583527_+	hypothetical protein	Q9MCC3	Vibrio_phage	2.2e-32	60.3

DBSCAN-SWA_2

1186763 : 1206204

Vibrio_phage(78.26%)

tail,portal,terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005530019.1\|1186763_1186961_-	hypothetical protein	A0A2I7RNJ8	Vibrio_phage	4.3e-22	86.2
WP_005530020.1\|1186960_1187659_-	hypothetical protein	A0A2I7RNK2	Vibrio_phage	4.3e-125	91.8
WP_005530022.1\|1187649_1188339_-	hypothetical protein	A0A2I7RNK1	Vibrio_phage	1.1e-112	80.3
WP_005530024.1\|1188352_1188889_-	hypothetical protein	A0A2I7RNK5	Vibrio_phage	2.0e-74	81.4
WP_005530026.1\|1188901_1189189_-	hypothetical protein	NA	NA	NA	NA
WP_005530028.1\|1189198_1191676_-\|tail	phage tail protein	A0A2I7RNJ3	Vibrio_phage	2.5e-143	81.4
WP_005530030.1\|1191688_1192291_-	Hemolysins-related protein	A0A2I7RNJ4	Vibrio_phage	6.4e-101	85.5
WP_005530032.1\|1192277_1193465_-	bacteriophage protein	A0A2I7RNJ7	Vibrio_phage	1.9e-197	85.1
WP_005530034.1\|1193457_1193805_-	DUF2590 family protein	A0A2I7RNH9	Vibrio_phage	5.0e-50	89.5
WP_005530035.1\|1193804_1195691_-\|tail	phage tail tape measure protein	A0A1D9C9V3	Salinivibrio_phage	2.5e-228	61.3
WP_005530039.1\|1195901_1196165_-	hypothetical protein	A0A2I7RNJ9	Vibrio_phage	1.7e-29	78.3
WP_005530042.1\|1196161_1196398_-	hypothetical protein	A0A1D9C9R8	Salinivibrio_phage	1.0e-09	42.7
WP_005530044.1\|1196400_1196631_-	hypothetical protein	NA	NA	NA	NA
WP_005530046.1\|1196627_1197140_-	hypothetical protein	A0A2I7S7C4	Vibrio_phage	2.1e-20	40.1
WP_005530048.1\|1197136_1197355_-	DnaK suppressor protein	A0A2I7RNJ6	Vibrio_phage	9.8e-20	70.6
WP_005530050.1\|1197367_1197823_-	DUF2597 family protein	A0A2I7RNI0	Vibrio_phage	2.2e-77	93.4
WP_005530052.1\|1197826_1198948_-	DUF2586 family protein	A0A2I7RNI8	Vibrio_phage	5.2e-181	83.0
WP_005530054.1\|1198963_1199620_-	hypothetical protein	A0A2I7RNI6	Vibrio_phage	1.9e-103	86.7
WP_005530056.1\|1199603_1200095_-\|tail	phage tail protein	A0A2I7RNH2	Vibrio_phage	6.4e-83	92.0
WP_005530058.1\|1200091_1200511_-	hypothetical protein	A0A2I7RNH7	Vibrio_phage	3.0e-49	69.1
WP_005530060.1\|1200629_1201346_-	hypothetical protein	A0A2I7RNJ0	Vibrio_phage	1.7e-68	58.0
WP_005530062.1\|1201349_1202360_-\|capsid	phage major capsid protein, P2 family	A0A1D9C9Q5	Salinivibrio_phage	7.9e-120	65.7
WP_005530064.1\|1202360_1203236_-	hypothetical protein	A0A2I7RNH1	Vibrio_phage	3.8e-78	60.1
WP_038863001.1\|1203410_1205192_+\|terminase	terminase	A0A1D9C9R1	Salinivibrio_phage	3.0e-263	80.7
WP_005530066.1\|1205196_1206204_+\|portal	phage portal protein	A0A1D9C9P9	Salinivibrio_phage	1.2e-115	61.8

DBSCAN-SWA_3

1209458 : 1214190

Vibrio_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011999296.1\|1209458_1209710_+	ogr/Delta-like zinc finger family protein	R9TNQ2	Vibrio_phage	1.2e-29	75.9
WP_005530080.1\|1209704_1209968_-	hypothetical protein	Q8HA64	Vibrio_phage	1.7e-13	56.9
WP_005530082.1\|1210018_1211905_-	replication endonuclease	A0A218M4H2	Erwinia_phage	1.1e-63	38.2
WP_005530084.1\|1212143_1212371_-	hypothetical protein	NA	NA	NA	NA
WP_005530087.1\|1212370_1212571_-	hypothetical protein	A0A2I7RNH0	Vibrio_phage	1.5e-06	42.9
WP_005530089.1\|1212599_1213139_-	hypothetical protein	A0A2I7RNI1	Vibrio_phage	3.5e-50	55.3
WP_005530092.1\|1213253_1213466_-	hypothetical protein	U3PFJ1	Vibrio_phage	1.3e-13	54.3
WP_005530094.1\|1213563_1214190_+	phage repressor protein CI	A0A2I7RNF9	Vibrio_phage	8.5e-40	42.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP015863

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015863_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015863_1

831224-831379

Orphan

Consensus_repeat	Method
CGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCATTTCCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015863_1

>merge|NZ_CP015863|1|831224-831379|CRISPRCasFinder
CGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCATTTCCGCAAAGTATAGATTATTTTTAGATGGTGCGGAAGGAGAGACTTGAACTCTCACACCTTTCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCACTTCCGCA

>NZ_CP015863|1|1|831224-831379|CRISPRCasFinder
CGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCATTTCCGCA	AAGTATAGATTATTTTTAGATGGTGCGGAAGGAGAGACTTGAACTCTCACACCTTT
CGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCACTTCCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015863.1\|WP_005535720.1\|839439_840528_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP015863.1\|WP_005535723.1\|841819_842629_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|225464
NZ_CP015863.1\|WP_005425553.1\|826738_827836_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NZ_CP015863.1\|WP_005438598.1\|834797_835388_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP015863.1\|WP_005535711.1\|833695_834787_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP015863.1\|WP_011105708.1\|829359_829506_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015863.1\|WP_005535721.1\|840532_841390_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP015863.1\|WP_005535716.1\|836511_837399_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_CP015863.1\|WP_005425837.1\|819723_820281_-\|luciferase	unknown	unknown	gnl\|CDD\|225527
NZ_CP015863.1\|WP_005449254.1\|835539_836484_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP015863.1\|WP_005530724.1\|829592_830768_+\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	unknown	unknown	gnl\|CDD\|181564
NZ_CP015863.1\|WP_005530717.1\|823180_823651_+\|zinc-ribbon-containing-protein	unknown	unknown	gnl\|CDD\|182915
NZ_CP015863.1\|WP_005535722.1\|841430_841814_+\|SirB2-family-protein	unknown	unknown	gnl\|CDD\|225636
NZ_CP015863.1\|WP_005535717.1\|837380_838019_-\|lipoprotein-localization-protein-LolB	unknown	unknown	gnl\|CDD\|234578
NZ_CP015863.1\|WP_005535718.1\|838153_839410_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP015863.1\|WP_005425552.1\|826271_826736_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP015863.1\|WP_005530721.1\|827909_829334_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP015863.1\|WP_005530715.1\|820452_823026_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP015863.1\|WP_005425551.1\|825265_826165_-\|CNNM-family-magnesium/cobalt-transport-protein-CorC	unknown	unknown	gnl\|CDD\|226910
NZ_CP015863.1\|WP_033000051.1\|823707_825228_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721

Protein	Function_ID	Function_description	E-value
NZ_CP015863.1\|WP_005535720.1\|839439_840528_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP015863.1\|WP_005535723.1\|841819_842629_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|225464	COG2912, COG2912, Uncharacterized conserved protein [Function unknown].	5.94232e-96
NZ_CP015863.1\|WP_005425553.1\|826738_827836_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	2.79853e-168
NZ_CP015863.1\|WP_005535717.1\|837380_838019_-\|lipoprotein-localization-protein-LolB	gnl\|CDD\|234578	PRK00022, lolB, lipoprotein localization protein LolB.	7.70298e-70
NZ_CP015863.1\|WP_005535711.1\|833695_834787_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP015863.1\|WP_005530721.1\|827909_829334_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP015863.1\|WP_005535721.1\|840532_841390_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.60705e-137
NZ_CP015863.1\|WP_005535716.1\|836511_837399_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	0
NZ_CP015863.1\|WP_005425837.1\|819723_820281_-\|luciferase	gnl\|CDD\|225527	COG2980, RlpB, Rare lipoprotein B [Cell envelope biogenesis, outer membrane].	8.63493e-52
NZ_CP015863.1\|WP_005449254.1\|835539_836484_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP015863.1\|WP_005530724.1\|829592_830768_+\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	gnl\|CDD\|181564	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional.	0
NZ_CP015863.1\|WP_005530717.1\|823180_823651_+\|zinc-ribbon-containing-protein	gnl\|CDD\|182915	PRK11032, PRK11032, zinc ribbon-containing protein.	2.18543e-99
NZ_CP015863.1\|WP_005535722.1\|841430_841814_+\|SirB2-family-protein	gnl\|CDD\|225636	COG3094, COG3094, Uncharacterized protein conserved in bacteria [Function unknown].	3.77781e-37
NZ_CP015863.1\|WP_005535718.1\|838153_839410_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NZ_CP015863.1\|WP_005425552.1\|826271_826736_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	9.25994e-68
NZ_CP015863.1\|WP_005438598.1\|834797_835388_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	4.57151e-107
NZ_CP015863.1\|WP_005530715.1\|820452_823026_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP015863.1\|WP_005425551.1\|825265_826165_-\|CNNM-family-magnesium/cobalt-transport-protein-CorC	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	1.57562e-162
NZ_CP015863.1\|WP_033000051.1\|823707_825228_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0

>NZ_CP015863.1|WP_005530724.1|829592_830768_+|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase
MNKYDIAVIGGGMVGAAVAVGFAKQGRSVVVVEGAEPKAFEASQALDVRVSAISHQSVKLLDSLGAWSAIESMRVCPYRRLETWEHPECRTRFHSDELSLEQLGYIVENRLIQLGLWQAFAQHDNLTVMCPERLKDIEFAEVNRVTLESGEQFEANWVIGADGANSKVRQLAGIGVTAWDYRQHCMLINVKTELPQQDITWQQFTPSGPRSFLPLCSLIEDGQEVGQGSLVWYDSPKRIKQLCAMNKPQLREEILRHFPAELGDIEVLQFGSFPLTRRHAQSYSNKNCVLVGDSAHTINPLAGQGVNLGFKDVAVLLAVTEQQEQLNDALLAKYERARRPDNLLMQTGMDVFYKGFSNDLGPLKFARNAALKLAENSGPIKAQVLKYALGM
>NZ_CP015863.1|WP_011105708.1|829359_829506_-|hypothetical-protein
MLYIGQKTRFHQGLQRIRQITSQVLFKAVQYAAYRRDGGYNLSNSSPI
>NZ_CP015863.1|WP_005530721.1|827909_829334_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKKPGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKQSQSNEAPVMDISFPEIEKFDRLPEPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTGIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDLSEQVKKERLYELQQTVNTQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSADLIGQFVDVKITDVFANSLRGELVRTEKDMDLRSVISPTQMMAKTRREDELGVATFTP
>NZ_CP015863.1|WP_005425553.1|826738_827836_-|PhoH-family-protein
MSNKIVTLEINLEPSDNRRLASLCGPFDDNIKHLERRLGVEINHRSDLFTIVGKPHTAAAALDILKTLYVDTAPVRGETPDIEPEQIHLAIKESGVLEQNTESNFEHGKEVFVKTKKGVIKPRTPNQGQYLMNMVTHDITFGIGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAIEVLNEVDDISFNFFQADDVVRHPVVARIVNAYEKWEAQDQKERKEFEKRRREERDAKLLEAAKAELNAQVAATKE
>NZ_CP015863.1|WP_005425552.1|826271_826736_-|rRNA-maturation-RNase-YbeY
MAIELDLQLAVENEEGLPSEQDFQLWLDKTIPLFQPQAELTIRIVDEQESHELNHEYRGKDKPTNVLSFPFEVPPGMEMDLLGDLIICRQVVEKEAVEQNKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAEKE
>NZ_CP015863.1|WP_005425551.1|825265_826165_-|CNNM-family-magnesium/cobalt-transport-protein-CorC
MNEDNSPSSNEGKKEKAEGPSRKSFFERLGQLFQGEPKDRQELVDVIRDSEINDLIDHDTRDMLEGVMEISEMRVRDIMIPRSQMVTVERTDDLDTLIALITDAQHSRYPVISEDKDHVEGILLAKDLLKYLGSGSNPFDIEEVIRPAVVVPESKRVDRLLKEFREERYHMAIVVDEFGGVSGLVTIEDILEEIVGDIEDEFDDDEETDIRKLSKHTFAVRALTTIEEFNETFGTNFSDEEVDTVGGMVMTAFGHLPSRGEVVDIEAYSFKVTAADNRRVIQLQVTIPDEEKLVEATQE
>NZ_CP015863.1|WP_033000051.1|823707_825228_-|apolipoprotein-N-acyltransferase
MMNVLFHRLKRPLVAAFVGASTTLAFAPYQLWPIAILSPAILLILLANQSPKRALWIGYAWGLGQFATGVSWVYVSIAGFGGMPLIANLFLMGLLIAYLSVYTGLFAWLSNKFFPEFTLSKALLAAPALWLVTDWLRGWVMTGFPWLWLGYSQIDAPLASFAPIGGVELLTLFIMISAGALAYAWIHKQWLMLLIPAVLLSAGFGIRQYDWVAPRVEDTTKVALIQGNVDQNLKWLPSQRWPTIMKYADLTRENWDADIIVWPEAAIPAFEIEVPSFLRNIDAAAKMNNSAIITGVVNQGEDGQFYNSILSLGVNPYGDYSFDMDKRYHKHHLLPFGEFVPFEDVLRPLAPFFNLPMSSFSRGDFVQPNIVANGKHMAPALCYEIIFSEQVRQNVTDDTDFILTLSNDAWFGHSIGPLQHMEIARMRALELGKPLIRSTNNGVTAVTDHKGKIIEQIPQFETAVLRAELVPTDGQTPYRIVGTWPLYIWAGLSLMLAWWLPRKKKS
>NZ_CP015863.1|WP_005530717.1|823180_823651_+|zinc-ribbon-containing-protein
MPKRKAGYEEMLEDVIETLKHSPDEVNKVFETSGKVVDAANDMTQDELSLISAYVKADLKAFSDNYEEGKSGPFYLTIADSIWQGLLDITDRTKVEWVELFDDLEHQGLYEAGEVIGLGTLVCEECGHKTTYNHPTVIIPCIKCNHTGFSRQSLKP
>NZ_CP015863.1|WP_005530715.1|820452_823026_-|leucine--tRNA-ligase
MQEQYNPQDLEQKVQKHWDDNKTFVVSEDPNKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVSRFQRLQGKNVMQPIGWDAFGLPAENAAVKNNTAPAPWTYENIEYMKNQLKMLGLGYDWEREFATCTPEYYRWEQEFFTKLYEKGLVYKKMSTVNWDPVDQTVLANEQVVDGRGWRSGAIVEQKEIPQWFIKITEYAQELIDDLDKLEGWPEMVKTMQRNWIGRSEGVELTFEVKGQQDLEVYTTRPDTLMGVTYVGIAAGHPLAAEAAKTNPGLAAFVEECKNNKVAEAEMATMEKKGMATGLTAIHPLNGREVPVYVANFVLMDYGTGAVMAVPAHDQRDFEFATKYSLDIVPVIKPVDGSELDISEAAYTEKGVLFDSGEFDGLEFQAAFDAIAAKLEAEGKGTKTVNFRLRDWGVSRQRYWGAPIPMVTTEDGQVHPVPADQLPVILPEDVVMDGVTSPIKADKEWAKTTFNGEPALRETDTFDTFMESSWYYARYCSPQADDILDPDKANYWLPVDQYIGGIEHACMHLLYSRFFHKLLRDTGYVTSDEPFKRLLCQGMVLADAFSYENEKGGTEWVAPTDVAVERDGKGRITSAKDTEGRDVTHSGMIKMSKSKNNGIDPQEMVDKYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVNEHTSKGAAEAVDAAALSGDQKALRRDVHKTIAKVTDDIARRQTFNTAIAAIMELMNKLAKAPQESAQDRAILDEALKAVVAMLYPITPHISYELWAALGEADIDNAAWPTFDEKALVEDEKTIVVQVNGKLRAKLTVAADATKEQVEELGLNDENVTKFTDGLTIRKVIYVPGKLLNIVAN
>NZ_CP015863.1|WP_005425837.1|819723_820281_-|luciferase
MRFFSLIKLPVVLVLAGLLSACGFHLRGEYSVPEELHTMSFTSYDEYSPLTRYIRAQLELNKVDLVKPSSNTPNLHLSEATIDERTLSLYQNSRAAEKELTYVVKYRVTIPGFGAKDFTTTVNRNYLDNPLTALAKSVERDVIEDEMRQQAAGQMMRQLGRVRAEYEQGHVAPEATNANSTNTNS
>NZ_CP015863.1|WP_005535711.1|833695_834787_-|redox-regulated-ATPase-YchF
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPVPDLRLDALAKIVNPQKVLPTTMEFVDIAGLVAGASRGEGLGNKFLANIRETDAIGHVVRCFENDNIVHVAGKVSPIEDIEVINLELAMADLDSCERAIQRNAKKAKGGDKDAKFELTVLEKLLPVLTEGGMARTVDLAKEELAAIGYLNFLTLKPTMYIANVNEDGFEDNEYLDAVREFAAKENNVVVPVCAAIESEMAELEDDEREEFLADLGIEEPGLNRVIRAGYELLNLQTYFTAGVKEVRAWTIPVGATAPKAAAKIHTDFEKGFIRAEVVGYDDFIQFNGESGAKDAGKWRLEGKEYIVKDGDVVHFRFNV
>NZ_CP015863.1|WP_005438598.1|834797_835388_-|aminoacyl-tRNA-hydrolase
MTQPIKLLVGLANPGPEYAKTRHNAGAWVVEELARVHNVTLKNEPKFFGLTGRIMVNGQDLRLLIPTTFMNLSGKAIAALAKFYQIKPEEIMVAHDELDLPPGVAKFKKGGGHGGHNGLRDTISKLGNNKDFYRLRIGIGHPGHKDKVAGFVLGKAPAKEQELLDAAADESVRCLDILIKDGLSKAQNRLHTFKAE
>NZ_CP015863.1|WP_005449254.1|835539_836484_-|ribose-phosphate-pyrophosphokinase
MPDMKLFAGNATPELAQRIADRLYISLGDASVSRFSDGEVAVQINENVRGSDVFIIQSTCAPTNDNLMELVVMIDAMRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSNVGVDRVLTIDLHAEQIQGFFDVPVDNIFGTPVLLEDMQSRGLENPVVVSPDLGGVVRARATAKALGDIDIAIVDKRRPRANVSEVMNLIGDVEGRDCVIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVFSGNAADNIKNSVLDQVIVTDSISLSKEMAATGKVTTLSLSRMLAEAIRRISNEESISAMFN
>NZ_CP015863.1|WP_005535716.1|836511_837399_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MEHHPMIDLSTCWPSPAKLNLFLYINGRTENGYHELQTLFQFVDHGDELTIQANDSGEITISPEIEGVPLKDNLIWKAATALQRFANCSYGAHIDLHKILPMGGGIGGGSSNAATALVALNYLWQTNLSDDELAKIGLALGADVPVFVRGFSAFAEGVGEKLSPAHPDEKWYLVVRPNVSIATSDIFRHPDLTRNTPKRDLETLLNKPSVNDCEKIVRMLYPEVDKQLSWLLQYAPSRLTGTGSCVFAEFSSKSEAETILAQLSDKVSAFVAQGRNISPLKETLAEYQSASHRPI
>NZ_CP015863.1|WP_005535717.1|837380_838019_-|lipoprotein-localization-protein-LolB
MKLINKPSNMTLRSFLILLLSSIVLAGCSSVPESVTNVEWQAHEQRLETIDNFQATGKLGYIGPDQRQSLNFFVKHSSAQTQYRFTGPLGLTALKLTITPQGATVETIDDQVLSARDANQLIYRLTGLMIPVDNLPDWLLGLPTDADSFQLSPTHTLQALDKQIDLNDWNIAYQRYGDIEWHEQTLPLPNKLRVSTSDVKINFVITKWNITQ
>NZ_CP015863.1|WP_005535718.1|838153_839410_+|glutamyl-tRNA-reductase
MSLLAIGINHNTASVDLREKVAFGPDKLGPALEQLREHEAVNGSVIVSTCNRTEVYCDVKQGARNKLIDWLAQFHQVNQEDLMPSLYIHEEQAAIKHLMRVSCGLDSLVLGEPQILGQVKQAFSDSRDHQAVDTSIDKLFQKTFSVAKRVRTETDIGGNAVSVAYAACTLAKHIFESLSDSTVLLVGAGETIELVAKHLASNGCTKMIVANRTRERALGLGEQFGAEVISLNEIPDHLPKADIVISSTASPLPIIGKGMVETALKKRRHQPMLLVDIAVPRDVEAQVGELSDAYLYSVDDLQSIIDSNIEQRKVEAIQAEAIVSEESAAFMTWLRSLQAVDSIRDYRKSANEIREDLLSKSLQSLATGADPEKVLRELSNKLTNKLIHAPTRALQSAAEQGEPAKLTVIRQTLGLDDL
>NZ_CP015863.1|WP_005535720.1|839439_840528_+|peptide-chain-release-factor-1
MKASILTKLETLVERYEEVQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEDMANEDDEEMREMAQEEIKEAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSSEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLQSLIDPVVQEHQADQLAALAENG
>NZ_CP015863.1|WP_005535721.1|840532_841390_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MSQVQSIEQALKSATAILTEGGKESPSLDAAVLLCHVLGKPRTYLLTWPEKALEEEQQAQFDDLLARRIAGEPVAYIIGEREFWSLPLTVSPSTLIPRPDTERLVEVALDKTYEQTGPILDLGTGTGAIALALASEMPKRQVMGVDLKQEAKELAEYNASQLNIKNVTFDQGSWFEPIVSGTKFALIVSNPPYIDEQDPHLSQGDVRFEPKSALVADENGLADIRHISDLARQYLEEGGWLAFEHGYDQGDAVREIMTNFGYEQVVTEKDYGGNDRVTLGCYKPQ
>NZ_CP015863.1|WP_005535722.1|841430_841814_+|SirB2-family-protein
MYVALKHIHLVTIALSATLLSIRFALLMMDSPKRNKRFLKVFPHIVDTALLLSGIGLIMVTGFIPFTDAAPWLTNKITCVLAYIALGFFALKMAKNKLLRIFAFFGALGWLVMAANIAVSKNPNLFG
>NZ_CP015863.1|WP_005535723.1|841819_842629_+|tetratricopeptide-repeat-protein
MLEFFDEDFDNMALVEGALELNHSINPDTNVHWAKLELERLYEEAEAILVHETDEEQRFDSFLRLFFYEWGFKGDEQEYFISDNSFIDKVLERKKGIPVSLGAILLYLGNRLGFPMKGVTFPTQFLIKVDWMHKTPDYINPFNGEYVGEKILQAWLIGQEGPLATLKPEHFEEADNPTVIGRWLALIKSAMLREERYTLALRCTNLALTFVPDDPYEIRDRGFIFQQLECHQVAVSDFQYFIDQCPDDPASELLKSQVNAMSEKHVTLH

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Crispr_ID: NZ_CP015863_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015863_2

2844287-2844524

Orphan

Consensus_repeat	Method
CCTCCTTAGCTCAGTAGGTAGAGCAACGGACTGATAATCC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP015863_2

>merge|NZ_CP015863|2|2844287-2844524|PILER-CR
CTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATTCTTTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCATATTTGGTGCACTTGCTTAAAGCAAGACACAAACAGAATAGTTCCTCCTTAGCTCAGTTGGTAGAGCGACGGACTGTTAATCCG

>NZ_CP015863|2|1|2844287-2844524|PILER-CR
CTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGT	CACCAGTTCGATTCCGGTAGTCGGCACCATTCTTTTGCCTCGA
TAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCG	GTGGTTCGATTCCGCCTCGAGGCACCATATTTGGTGCACTTGCTTAAAGCAAGACACAAACAGAATAGTTCCTCCTTA
GCTCAGTTGGTAGAGCGACGGACTGTTAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015863.1\|WP_005537189.1\|2847369_2848803_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP015863.1\|WP_005534245.1\|2857928_2858684_-\|chitin-disaccharide-deacetylase	unknown	unknown	gnl\|CDD\|235007
NZ_CP015863.1\|WP_005534928.1\|2836747_2837920_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP015863.1\|WP_005534247.1\|2861816_2862122_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP015863.1\|WP_005534246.1\|2860393_2861737_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP015863.1\|WP_005534249.1\|2862370_2863654_+\|chitin-oligosaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200570
NZ_CP015863.1\|WP_038862576.1\|2858701_2860024_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_CP015863.1\|WP_005534243.1\|2856824_2857823_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
NZ_CP015863.1\|WP_005534930.1\|2839149_2840178_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223971
NZ_CP015863.1\|WP_005534932.1\|2840189_2840909_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP015863.1\|WP_005425799.1\|2838126_2839047_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NZ_CP015863.1\|WP_005534926.1\|2836126_2836729_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP015863.1\|WP_005534250.1\|2864514_2865180_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187643
NZ_CP015863.1\|WP_005534934.1\|2841112_2842189_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP015863.1\|WP_005425792.1\|2842208_2842481_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP015863.1\|WP_005432874.1\|2860034_2860346_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_CP015863.1\|WP_038863707.1\|2842567_2843698_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_CP015863.1\|WP_005425805.1\|2835239_2835530_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP015863.1\|WP_005537198.1\|2844850_2846476_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP015863.1\|WP_005534924.1\|2835589_2836021_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616

Protein	Function_ID	Function_description	E-value
NZ_CP015863.1\|WP_005537189.1\|2847369_2848803_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP015863.1\|WP_005534245.1\|2857928_2858684_-\|chitin-disaccharide-deacetylase	gnl\|CDD\|235007	PRK02134, PRK02134, chitin disaccharide deacetylase.	1.43079e-121
NZ_CP015863.1\|WP_005534928.1\|2836747_2837920_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP015863.1\|WP_005534247.1\|2861816_2862122_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.26594e-46
NZ_CP015863.1\|WP_005534246.1\|2860393_2861737_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	1.26236e-154
NZ_CP015863.1\|WP_005534249.1\|2862370_2863654_+\|chitin-oligosaccharide-deacetylase	gnl\|CDD\|200570	cd10946, CE4_Mll8295_like, Putative catalytic NodB homology domain of uncharacterized Mll8295 protein encoded from Rhizobium loti and its bacterial homologs. This family is represented by a putative polysaccharide deacetylase Mll8295 encoded from Rhizobium loti. Although its biological function still remains unknown, Mll8295 shows high sequence homology to the catalytic domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Both Mll8295 and SpPgdA belong to the carbohydrate esterase 4 (CE4) superfamily. This family also includes many uncharacterized bacterial polysaccharide deacetylases.	4.08242e-73
NZ_CP015863.1\|WP_038862576.1\|2858701_2860024_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP015863.1\|WP_005534243.1\|2856824_2857823_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	1.83865e-113
NZ_CP015863.1\|WP_005534930.1\|2839149_2840178_-\|hypothetical-protein	gnl\|CDD\|223971	COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair].	1.72453e-08
NZ_CP015863.1\|WP_005534932.1\|2840189_2840909_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	9.88686e-108
NZ_CP015863.1\|WP_005425799.1\|2838126_2839047_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP015863.1\|WP_005534926.1\|2836126_2836729_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	1.34138e-123
NZ_CP015863.1\|WP_005534250.1\|2864514_2865180_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187643	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR. These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.55375e-71
NZ_CP015863.1\|WP_005534934.1\|2841112_2842189_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_CP015863.1\|WP_005425792.1\|2842208_2842481_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	9.88866e-59
NZ_CP015863.1\|WP_005432874.1\|2860034_2860346_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	1.19402e-35
NZ_CP015863.1\|WP_038863707.1\|2842567_2843698_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	4.87124e-150
NZ_CP015863.1\|WP_005425805.1\|2835239_2835530_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	1.0803e-59
NZ_CP015863.1\|WP_005537198.1\|2844850_2846476_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.39085e-61
NZ_CP015863.1\|WP_005534924.1\|2835589_2836021_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	1.28089e-67

>NZ_CP015863.1|WP_038863707.1|2842567_2843698_+|membrane-bound-lytic-murein-transglycosylase-MltC
MKKIAFIATALLMAGCSREFVEQIYDVNYEPTNRFANNLAELPGQFEKDTDALDALISSFSGNIKKRWGQREVKVAGKSNYVKYIDNYLSRAEVDFQKGVITIETVSPTEPQKHLKNAIITTLLTPDDPASVDLFSSKEIKLEGQPFLYNQVVDQDKKPIQWSWRANRFADYLIANQVKTKDVDFKKAYYVEIPMVEDHFSQRSYQYADIVRRASKKYDIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFKLVKNRSGQPSPEYLFNPENNIDTGTAYFYILKNRYLKDVQHPTSLEYSMISAYNGGTGGVLNTFHRTDRKRAMQDLNSLQPNQVYWALTKKHPNAEARRYLEKVTNFKKEFNAG
>NZ_CP015863.1|WP_005425792.1|2842208_2842481_+|oxidative-damage-protection-protein
MSRTVFCARLKKEGEGLDFQLYPGELGKRIFDNISKEAWAQWQHKQTMLINEKKLNMMDPEHRKQLETEMVNFLFEGKDVHIEGYTPPSE
>NZ_CP015863.1|WP_005534934.1|2841112_2842189_+|A/G-specific-adenine-glycosylase
MTPFASAILEWYDAYGRKDLPWQQNKTAYSVWLSEIMLQQTQVTTVIPYYQRFLERFPTVVDLANAEQDEVLHLWTGLGYYARARNLHKAAKEVAHKYNGEFPLDLEQMNALPGIGRSTAAAVLSSVYKQPHAILDGNVKRTLSRCFAVDGWPGQKKVENQLWEIAETHTPQTDVDKYNQAMMDMGAMMCTRSKPKCTLCPVNELCVAKKQGNVLDYPGKKPKKDKPVKQTRFVMLHHKNGDSHEVWLEQRPQTGIWGGLFCFPQTEHIDVESDIELLLEQRGIQANDIRHRETLITFRHTFSHYHLDITPILIDLSKQPNVVMEGNKGLWYNLSKPEEVGLAAPVKLLLEALPHELR
>NZ_CP015863.1|WP_005534932.1|2840189_2840909_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVTTNEYNEDGKMIRKIRSFVRREGRLTKGQENAMNECWPTMGIDYKAEILDWKEVFGNDNPVVLEIGFGMGASLVEMAKNAPEKNFIGIEVHSPGVGACLADAREAGITNLRVMCHDAVEVFEHMIPNGSLATLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLILNEGVFHMATDWENYAEHMIEIMNQAPGFENIAEEGDFIPRPEERPLTKFEARGHRLGHGVWDIKFKRTA
>NZ_CP015863.1|WP_005534930.1|2839149_2840178_-|hypothetical-protein
MYHYAILANPGHNRIYFDSAMTIACSELKAILASEGVEVTEIGNKDVGLPAALVFSCETELSEAQAGKIAASSIYYALFEVREDGLLRPIQAPAFNTFPESMSQILRYTGKTNEQFTRLMVNLGVSAANTGSAQLTLMDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGGKKVADGFVVEAAADKDDYNKGNLQTMKLYSSDTRIADQVVKKNSVDVMVSDLPYGVQHGSKNAKDSKLNRSPLELLKEALPAWKVVLKKQGSVVLSFNEFTLKWKDVAALFEEQGWKVLSEEPYIGYLHRVDQSINRNIIVAIKP
>NZ_CP015863.1|WP_005425799.1|2838126_2839047_-|glutaminase-B
MKPTAQILTDILAEVRPLIGQGKVADYIPALAKVPNTKLGIAVYTNEGEVIKAGDAEESFSIQSISKALSLTLAMCLYKQEEIWCRVGKEPSGQAFNSMIQLEMEQGIPRNPFINAGAIVVADLLQSRLSAPRQRLLEFARQLSGDTHIVYDKVVAASEMMHGDRNAAIAYLMRSFGNFENEVIPVLQNYFHACALKMSCVDLAKTFSYLANKGTSVQTGKPVVSPTQTKQLNALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPELDASGNSLAGTKALELLAERIGRSIF
>NZ_CP015863.1|WP_005534928.1|2836747_2837920_+|radical-SAM-family-heme-chaperone-HemW
MLTPPALSLYVHIPWCVQKCPYCDFNSHALKAEIPEEEYINALLEDLDTDIEKYRLNEAPRPLHSIFIGGGTPSLISAEGIERLLKGIEARIPFKPEIEITMEANPGTIEAERFVGYRKAGVTRISIGVQSFEQQKLERLGRIHGQDEAVNAAKLAHQIGLNSFNLDLMHGLPDQSIEQALADLDKAIELAPPHLSWYQLTIEPNTMFYYKPPTLPDDDDLWDIFEQGHEKLAAAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGSHGKLSFADGHIVRTTKVKHPRGYLMAYQNMVKPYLDSEQLVADEDRPFEFFMNRFRLMEACPKQDYIDTTGLPLSSIQETIDWALEMGYLSETETHWQITEKGKLFLNDLLEAFMAEEE
>NZ_CP015863.1|WP_005534926.1|2836126_2836729_+|XTP/dITP-diphosphatase
MKKIVLATGNQGKVREMADLLSDFGFEVLAQSEFNVSEVAETGTTFIENAIIKARHAAQETGLPAIADDSGLEVDFLKGAPGIYSARYAGEKASDQENLEKLLKAMEGVPETERTARFHCVLVLMRHENDPTPIVCHGKWEGRILTEAHGENGFGYDPIFFVPEDNCASAELEPARKKQLSHRGKALKSLFAQLSEQVSQ
>NZ_CP015863.1|WP_005534924.1|2835589_2836021_+|DUF4426-domain-containing-protein
MSKWITALLISLLSLPSMAGQFKTMKDIEVHYIAFNSTFLTPKIARSYDIKRNGYNAVLNISVIDSASLGKPAVEAEISGQAKNLIGQTQKLTFREVKEGDAIYYLAELGITNEETFTFDIDVKAGNKGSGKLKFTQKFYVEE
>NZ_CP015863.1|WP_005425805.1|2835239_2835530_+|YggU-family-protein
MSEAVWHDGEDVVLRLYIQPKASRDKIVGLHGEELKIAITAPPVDGKANAHLTKFLAKQFKVAKGLVHIEKGELGRHKQIRIESPVQIPTEIKAII
>NZ_CP015863.1|WP_005537198.1|2844850_2846476_+|methyl-accepting-chemotaxis-protein
MKLKTQAYLLSAIILVALLALTATGLWTLRVASNLDNKARVTELFKSAYSILTEVEQMAVEGKMPEDEAKALATRLLRNNIYKDNEYVYVADENMIFVAAPLDPQLHGTSFHDFRDGDGNSVGQLILDVLGRKTGQIVEYTWTQKQPDGTVEEKHSIAEKTPHWNWVVGTGIGFNEVNARFWSTAHWQLALCLAIAGAILSGLIISIRKMLNLLGGEPNDVREAVQAVAQGDIQASFEHTAPKDSIYGAVQEMSQSLAKMVTNLDESMRALRSELSAVESRSNSIADLTMSQQQSTAMIATAMTEMASSANHVASSASDTAHNTDEADKQSQHTQSLIHSTVDNIQGLATQLNTASKAVADLDQDVNSIVKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQDSTKEIQQMISNLQEGSRNAIHTMEICAETSESTVTESMNASEALQQIVTALESITAMSQQIATAAAEQTQVSDDIAHRINLIEESGSQLNAVVTESQSSTQTLASLADELEGWVNKFSVKH
>NZ_CP015863.1|WP_005537189.1|2847369_2848803_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MQQIKSETLRVLFESLSSQDGIAVINPATEQELIRLKPSSLDELDVQIEACKSAQLDWAKLSAKARSASLKKWFQLLVEHTEDIANIITLEQGKPLTESRGEVAYGASFVEWFAEEAKRAYGEVIPAPSVDRRLSTIKQPVGVCAAITPWNFPIAMITRKAAPALSAGCGMIIKPSELTPLTALAVVELAHQAGIPKALLSTVVSEQAAEFGVVLSTDPRIKKISFTGSTRVGKILMKQASDTVKAASMELGGNAPFIVFDDADLEAAANGLIASKFRNAGQTCVCTNRLYVHQSVKEAFLTKLLDKVGSLTVGNGLEENTTLGPVITMASKHRLEAVIDQAVQEGATMLNQPQKCSGRFMEPVILDNVEQGMAIVQQELFGPVLPVISFDADEQVLSMANDTEYGLACYFYTDSLKRIIKFSEGLEYGMVGVNEGIISTEVAPFGGIKESGIGREGAKQGMDEYLETKYICLGGLS
>NZ_CP015863.1|WP_005534243.1|2856824_2857823_-|LacI-family-DNA-binding-transcriptional-regulator
MARIKDVAELAGVNRSTVSRIINGEGKFRDETRKKVEAAMAELNYRPSAIARSLATSSSNMVGLLVTYYTGGFFGEMMEQVQTELDMHKKFLITAQGHHSAEGEREAIQRFNDLRCDGYVLHSRYLSDDDLRELAKLPTPFVLLDRYVEGLEERCVTFNHHHASRIAVEHLIAGGHKNIACITGPSQRHNSLLRKLGYVDAMKTAGIDIDESWCEEGNYGRQSGYDAMAAIYHRHPEVTAVFSCSEEMTVGAMQFLHEKRISVPEQISLVSFDSVDLCESLYPTVSAVHFPISDMARVAVQTLMGLIKDQQLHTKPVFEAELKLRKADRTLS
>NZ_CP015863.1|WP_005534245.1|2857928_2858684_-|chitin-disaccharide-deacetylase
MKVIFNADDFGLTPGVNKGIVKAHQQGVVRSTTMMVGMDAEQHAVELAKQNPNLKIGVHLRFTAGAPVTGHLNLTNGQTQFVSYDELWKKQDFEEEVVYQEAIAQVEAFLKLGLSLSHLDSHHHAHTHPQLLPVIRKVAQIYKVPLRGSGLCHTESKVKYYFTDEFYDQGVSLGGIMKHLLGLKARYDVVEVMCHPAEADQSLLLKSSYALQRELELQVLTSPILKLEFAQHGMTVTDYSALISSSKVVSV
>NZ_CP015863.1|WP_038862576.1|2858701_2860024_-|6-phospho-beta-glucosidase
MPRNAIKLAIIGGGSSYTPELVEGVIKRLEFLPVKQMHFVDIESGAEKLEIIKGLAQRMVDKAGADIEIKASFDRRDAIKDADFVMTQFRVGGLAARANDERIPIKYDVIGQETTGPGGFAKALRTIPVILDICKDIEELAPNAWMLNFTNPAGLVSEAVSKYTNVKSIGLCNVPVSMEMMIAEMMDCEPKELQLEFAGLNHLVWVLKAWLKGKDITQAVLEKVGDGANFSMKNIWEEPWDPAFLKALGAIPCPYHRYFYQTDAMLAEEKQSAGEQGTRAEQVMATESALFKLYQDPNLDYKPKELEERGGAYYSDASLNLVDSIYNNRNSIHVVNVLNNGSINGLPDDAVIECSAVIGSWGAKPLAVGELSSNIKGLLHQVKAYEQLAIEAAVEGSYDKALMALTNNPLVPDISRAKSILDEILAVNAPYLPQFKLTTL
>NZ_CP015863.1|WP_005432874.1|2860034_2860346_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MEQELVVMEIICNAGEARSLSYEALRLSREKDFSAAEEKLSQARECINKAHLIQTQLIEEDQGEGKVPMTLVMVHAQDHLMTTILAQEMAVEIVALNKQLAEK
>NZ_CP015863.1|WP_005534246.1|2860393_2861737_-|PTS-sugar-transporter-subunit-IIC
MDSMKLYDAIIGIVEKHIAPIAAKVGNQPHVRAMRDGFIVAMPFIIVGSFILIFAFPPFAEDTTFTLGRVWLDFATTHFDTIMMPFNMSMGIMTIFVSLGVAYSLAKAYKMDGITSAVLSLMSFLLVAAPAKDGALAMKHMGGTGIFTAVMCAFFAVELYRFMKKHNITIRMPEQVPPAIARSFEVLLPVLAIFLTLYPLSIFVQTQYDMLIPDAVMAMFKPLISASNTLPAIIGALLVCQLLWFAGIHGAAIVVGLLSPIFLTNISANIDAFVAGQPIPNVFTQPFWDFYIFIGGSGATLALVMLMSFSRSAHLKSIGRMSAVPGFFQINEPVIFGSPVVMNPILFIPFVFAPIVNATIAYFAVQLGFVGMGVATTPWTTPALIGASWGSGWTFSPVLLVIGLLILDLFIYLPFFKMFEKQVMEQELPTSKESKDAEQPSGEGVTA
>NZ_CP015863.1|WP_005534247.1|2861816_2862122_-|PTS-sugar-transporter-subunit-IIB
MKKILLCCSAGMSTSMLVKKMEQAAEKQGLECKIDALSVNAFDEAIREYDVCLLGPQVRFQLEELRKTAQEHGKNIDAISPQDYGMMKGEEVLQQALEMIN
>NZ_CP015863.1|WP_005534249.1|2862370_2863654_+|chitin-oligosaccharide-deacetylase
MKLTKLAMVTLLGSALSQFSYAQEAPKGTIYLTFDDGPINASIDVINVLNQQGVKGTFYFNAWHLDGIGDENEDRALEALKLALDTGHIVANHSYAHMIHNCVEEFGPNSGAECNATGDHQINSYQDPVYDAGTFAENLAVLERYLPNINSYPNYRGEEFARLPYTNGWRVTKNFKADGLCATSDDLKPWEPGYVCDTDNPSNSVKASIEVQNILANKGYQTHGWDLDWAPENWGIAMPANSLTEAEPFLGYVDAALNSCAPTTINPINSKAQEFPCGTPLHADKVIVLTHEFLFEDGKRGMGATKNLPRLAKFIQIAKEAGYIFDTMDNYTPVWQVGQAYVASDYVTHSGTVYKAVTTHVAQQDWAPSSTSSLWTNADPATNWTLNVAYEAGDVVTYQGLRYLVNVPHVSQADWTPSTQNTLFTTL
>NZ_CP015863.1|WP_005534250.1|2864514_2865180_-|SDR-family-NAD(P)-dependent-oxidoreductase
MIVITGASSGLGAQLAKLYDAQGEETLLTGRSEKKLNTLVQYLSSKAQVRSCDLIDASQVENLFDELPQAPTTVIHCAGSGYFGLLAEQDPQEIQKLIENNLTSAVHVLKELVKRYQEQPVNVVMVMSTAAQQPKAQESTYCAVKWAVKGLIESVRMELKGKPMKIVAVYPGGMATEFWETSGKSLDTSSFMSAGDAARMIHGALSNIGNGYVSDITVNRL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NZ_CP015863.1	2843975-2844017	0	1.0

1. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to position: 2843975-2844017, mismatch: 0, identity: 1.0

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccattctttt	Protospacer
*******************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	103819-103861	5	0.884
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35424-35466	5	0.884
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	296497-296539	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	KU052038	Escherichia phage SerU-LTIIb, partial genome	1162-1204	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	KU052038	Escherichia phage SerU-LTIIb, partial genome	3068-3110	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	LN997803	Escherichia coli phage phi467	15122-15164	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NZ_CP023526	Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence	1925-1967	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	52074-52116	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	52080-52122	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	52085-52127	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	52084-52126	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	13641-13683	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	MH494197	Escherichia phage CMSTMSU, complete genome	196768-196810	6	0.86
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NZ_CP054057	Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence	85813-85855	7	0.837
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	KY653118	Morganella phage IME1369_01, complete genome	694-736	7	0.837
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NC_049942	Escherichia phage JLK-2012, complete sequence	23522-23564	10	0.767
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	LC494302	Escherichia phage SP27 DNA, complete genome	76609-76651	11	0.744
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	17115-17157	11	0.744
NZ_CP015863_2	2.1\|2844329\|43\|NZ_CP015863\|PILER-CR	2844329-2844371	43	NC_027364	Escherichia phage PBECO 4, complete genome	207828-207870	11	0.744

1. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 5, identity: 0.884

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatcaagtc	Protospacer
*************************************.   *.

2. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.884

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagccggcaccaatcaagt	Protospacer
***************************.******** **   *

3. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgg	Protospacer
************************************* . .

4. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgg	Protospacer
************************************* . .

5. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgg	Protospacer
************************************* . .

6. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to LN997803 (Escherichia coli phage phi467) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgg	Protospacer
************************************* . .

7. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NZ_CP023526 (Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccagaatgcg	Protospacer
************************************   * .

8. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacga	Protospacer
************************************.*. .

9. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacga	Protospacer
************************************.*. .

10. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacga	Protospacer
************************************.*. .

11. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacga	Protospacer
************************************.*. .

12. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcacaaatcagcc	Protospacer
********************************** * **  ..

13. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcacaaatcagcc	Protospacer
********************************** * **  ..

14. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NZ_CP054057 (Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence) position: , mismatch: 7, identity: 0.837

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccaaatgcgg	Protospacer
************************************  . .

15. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to KY653118 (Morganella phage IME1369_01, complete genome) position: , mismatch: 7, identity: 0.837

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgactccggtagccggcaccatattaaa	Protospacer
******************.********.********* .*

16. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 10, identity: 0.767

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
atcaggtcgccagttcgattccggtagccggcaccatatgcgg	Protospacer
* .*****.******************.********* . .

17. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 11, identity: 0.744

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
gaaaggtcaccagttcgattccggtagtcggcacaaaataaag	Protospacer
.. ******************************* *  .

18. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 11, identity: 0.744

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
gaaaggtcaccagttcgattccggtagtcggcacaaaataaag	Protospacer
.. ******************************* *  .

19. spacer 2.1|2844329|43|NZ_CP015863|PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 11, identity: 0.744

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
gaaaggtcaccagttcgattccggtagtcggcacaaaataaag	Protospacer
.. ******************************* *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

689500 : 696565

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005532593.1\|689500_690715_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	4.8e-31	29.9
WP_005424883.1\|690752_691136_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_005440317.1\|691207_691531_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	4.0e-25	50.5
WP_005424897.1\|691586_692102_+	co-chaperone HscB	NA	NA	NA	NA
WP_005532592.1\|692123_693977_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.1e-110	40.4
WP_005424889.1\|693990_694329_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_005424887.1\|694373_694568_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_005532590.1\|694740_696039_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	9.1e-36	34.7
WP_005532589.1\|696139_696565_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.1e-21	40.6

DBSCAN-SWA_2

767254 : 773945

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010648200.1\|767254_768394_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.2e-62	41.7
WP_005530633.1\|768411_769662_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.9e-99	47.9
WP_005424846.1\|769789_770239_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_005530635.1\|770246_771371_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	7.8e-44	35.1
WP_005530636.1\|771382_772036_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.5e-34	38.4
WP_005530639.1\|772195_773305_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.3e-63	39.6
WP_005440184.1\|773474_773945_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

DBSCAN-SWA_3

2766468 : 2783696

uncultured_Mediterranean_phage(20.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005531690.1\|2766468_2769066_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.7e-76	37.3
WP_005531688.1\|2769208_2769676_-	recombination regulator RecX	NA	NA	NA	NA
WP_005531686.1\|2769882_2770926_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.4e-111	60.7
WP_005531683.1\|2771126_2771609_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.4e-26	48.1
WP_005531681.1\|2771694_2774256_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.7e-33	22.7
WP_005531677.1\|2775406_2776330_-	peptidoglycan DD-metalloendopeptidase family protein	A0A1P8CWQ1	Bacillus_phage	1.7e-07	34.2
WP_005531675.1\|2776344_2776971_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.5e-36	53.3
WP_005531673.1\|2776970_2777747_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-68	54.1
WP_005531671.1\|2777746_2778790_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005425365.1\|2778835_2779312_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_005531669.1\|2779326_2780037_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	1.4e-06	23.1
WP_005452106.1\|2780038_2780320_-	cell division protein FtsB	NA	NA	NA	NA
WP_005531667.1\|2780675_2781977_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.0e-136	60.3
WP_005531665.1\|2782055_2783696_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015864

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP015863

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection