CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP020922	Salmonella enterica subsp. enterica strain 16A242 chromosome, complete genome	4 crisprs	WYL,DEDDh,RT,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DinG	14	10
NZ_CP020924	Salmonella enterica subsp. enterica strain 16A242 plasmid unnamed2, complete sequence	1 crisprs	NA	1	0
NZ_CP020923	Salmonella enterica subsp. enterica strain 16A242 plasmid unnamed1, complete sequence	0 crisprs	cas14j	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020922_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020922_1

2370881-2370981

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020922_1

>merge|NZ_CP020922|1|2370881-2370981|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_CP020922|1|1|2370881-2370981|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020922.1\|WP_000908562.1\|2377687_2378191_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP020922.1\|WP_000532745.1\|2373188_2373908_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP020922.1\|WP_000928379.1\|2378177_2378495_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP020922.1\|WP_000059465.1\|2365332_2365602_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP020922.1\|WP_000105461.1\|2358930_2359383_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP020922.1\|WP_000421309.1\|2375957_2376953_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP020922.1\|WP_000130437.1\|2373885_2374893_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP020922.1\|WP_000802069.1\|2368088_2368973_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP020922.1\|WP_014343907.1\|2375070_2375967_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP020922.1\|WP_000380404.1\|2378532_2378976_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP020922.1\|WP_001294027.1\|2372499_2373030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020922.1\|WP_000133064.1\|2360937_2363616_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP020922.1\|WP_071953626.1\|2359410_2360913_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP020922.1\|WP_000089674.1\|2364237_2365182_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP020922.1\|WP_000207654.1\|2356959_2358303_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP020922.1\|WP_001670767.1\|2365843_2367979_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP020922.1\|WP_010723222.1\|2369078_2369159_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP020922.1\|WP_000224386.1\|2371194_2372439_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP020922.1\|WP_001040199.1\|2363836_2364238_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP020922.1\|WP_000884721.1\|2377169_2377694_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696

Protein	Function_ID	Function_description	E-value
NZ_CP020922.1\|WP_000908562.1\|2377687_2378191_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_CP020922.1\|WP_000532745.1\|2373188_2373908_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.17265e-108
NZ_CP020922.1\|WP_000928379.1\|2378177_2378495_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_CP020922.1\|WP_000059465.1\|2365332_2365602_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_CP020922.1\|WP_000105461.1\|2358930_2359383_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NZ_CP020922.1\|WP_000421309.1\|2375957_2376953_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_CP020922.1\|WP_014343907.1\|2375070_2375967_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP020922.1\|WP_000802069.1\|2368088_2368973_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP020922.1\|WP_000380404.1\|2378532_2378976_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.36854e-99
NZ_CP020922.1\|WP_000130437.1\|2373885_2374893_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP020922.1\|WP_000133064.1\|2360937_2363616_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP020922.1\|WP_071953626.1\|2359410_2360913_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP020922.1\|WP_000089674.1\|2364237_2365182_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP020922.1\|WP_000207654.1\|2356959_2358303_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP020922.1\|WP_001670767.1\|2365843_2367979_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP020922.1\|WP_010723222.1\|2369078_2369159_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_CP020922.1\|WP_000224386.1\|2371194_2372439_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP020922.1\|WP_001040199.1\|2363836_2364238_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.9646e-53
NZ_CP020922.1\|WP_000884721.1\|2377169_2377694_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.82299e-84

>NZ_CP020922.1|WP_010723222.1|2369078_2369159_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_CP020922.1|WP_000802069.1|2368088_2368973_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_CP020922.1|WP_001670767.1|2365843_2367979_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_CP020922.1|WP_000059465.1|2365332_2365602_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP020922.1|WP_000089674.1|2364237_2365182_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_CP020922.1|WP_001040199.1|2363836_2364238_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVFVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_CP020922.1|WP_000133064.1|2360937_2363616_+|translation-initiation-factor-IF-2
MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_CP020922.1|WP_071953626.1|2359410_2360913_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGVAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP020922.1|WP_000105461.1|2358930_2359383_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP020922.1|WP_000207654.1|2356959_2358303_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKGK
>NZ_CP020922.1|WP_000224386.1|2371194_2372439_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPMIGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIVLILLFGVGNALVHILSSFNLLPVYQ
>NZ_CP020922.1|WP_001294027.1|2372499_2373030_-|hypothetical-protein
MSEPASFFLHAHITESNLKKFFHSPATNIKDYDDWLPWFTEEQRLYGDPAKMLNNLATCNSGESEKNIYAEHINFNKETQIVTMDHIFLSESYEIFMPLMACVRGIEKFITPGENNFALIYYYWWGSEIAIALEFDANGSRITANPKAENLTIADAFFDEHGEALAEELYNKQGFI
>NZ_CP020922.1|WP_000532745.1|2373188_2373908_+|murein-L,D-transpeptidase
MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKAEDKLELWASANNKPYKLYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGIEEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKNRRLPTITVENRRYKISPTTLP
>NZ_CP020922.1|WP_000130437.1|2373885_2374893_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEQIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFRSPSEQYGVQQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKEELLG
>NZ_CP020922.1|WP_014343907.1|2375070_2375967_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVVLSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_CP020922.1|WP_000421309.1|2375957_2376953_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP020922.1|WP_000884721.1|2377169_2377694_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_CP020922.1|WP_000908562.1|2377687_2378191_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_CP020922.1|WP_000928379.1|2378177_2378495_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_CP020922.1|WP_000380404.1|2378532_2378976_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA

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Crispr_ID: NZ_CP020922_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020922_2

2720790-2721123

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP020922_2

>merge|NZ_CP020922|2|2720790-2721123|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGCCGATCCCCTTCCAGACCACCCTTTACAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCAGAGTTGTATCTTACCCTGTTTACGTTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATCCCAATATATTTCGCTATCAGTTACATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTGTTTATACCGGATTCCATGCGTTTTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP020922|2|1|2720790-2721062|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP020922|2|2|2720790-2721123|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP020922|2|1|2720790-2721123|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020922.1\|WP_001290660.1\|2724690_2726403_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP020922.1\|WP_000210449.1\|2715639_2716440_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP020922.1\|WP_000226838.1\|2711935_2714170_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP020922.1\|WP_000480218.1\|2714253_2714610_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP020922.1\|WP_000210927.1\|2722891_2724691_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP020922.1\|WP_000029738.1\|2728698_2731362_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP020922.1\|WP_000368584.1\|2731373_2732930_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP020922.1\|WP_071953548.1\|2707774_2710531_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP020922.1\|WP_000108313.1\|2722105_2722468_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP020922.1\|WP_000117946.1\|2732926_2733487_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP020922.1\|WP_001199961.1\|2719821_2720493_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP020922.1\|WP_001145543.1\|2727300_2728254_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP020922.1\|WP_001208013.1\|2721220_2722018_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP020922.1\|WP_001532579.1\|2714575_2714872_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP020922.1\|WP_000046849.1\|2710588_2711884_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP020922.1\|WP_000706479.1\|2706588_2707731_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP020922.1\|WP_000206415.1\|2733500_2734559_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP020922.1\|WP_000210863.1\|2716667_2718305_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP020922.1\|WP_000080404.1\|2726478_2727213_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP020922.1\|WP_000036734.1\|2718387_2719686_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
NZ_CP020922.1\|WP_001290660.1\|2724690_2726403_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP020922.1\|WP_000210449.1\|2715639_2716440_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP020922.1\|WP_000226838.1\|2711935_2714170_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP020922.1\|WP_000480218.1\|2714253_2714610_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP020922.1\|WP_000210927.1\|2722891_2724691_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP020922.1\|WP_000029738.1\|2728698_2731362_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP020922.1\|WP_000368584.1\|2731373_2732930_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP020922.1\|WP_071953548.1\|2707774_2710531_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP020922.1\|WP_000108313.1\|2722105_2722468_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP020922.1\|WP_000117946.1\|2732926_2733487_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP020922.1\|WP_001199961.1\|2719821_2720493_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP020922.1\|WP_001145543.1\|2727300_2728254_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP020922.1\|WP_001208013.1\|2721220_2722018_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
NZ_CP020922.1\|WP_001532579.1\|2714575_2714872_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
NZ_CP020922.1\|WP_000046849.1\|2710588_2711884_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP020922.1\|WP_000706479.1\|2706588_2707731_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP020922.1\|WP_000206415.1\|2733500_2734559_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP020922.1\|WP_000210863.1\|2716667_2718305_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP020922.1\|WP_000080404.1\|2726478_2727213_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP020922.1\|WP_000036734.1\|2718387_2719686_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>NZ_CP020922.1|WP_001199961.1|2719821_2720493_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP020922.1|WP_000036734.1|2718387_2719686_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP020922.1|WP_000210863.1|2716667_2718305_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP020922.1|WP_000210449.1|2715639_2716440_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP020922.1|WP_001532579.1|2714575_2714872_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP020922.1|WP_000480218.1|2714253_2714610_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP020922.1|WP_000226838.1|2711935_2714170_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP020922.1|WP_000046849.1|2710588_2711884_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP020922.1|WP_071953548.1|2707774_2710531_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLLALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP020922.1|WP_000706479.1|2706588_2707731_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP020922.1|WP_001208013.1|2721220_2722018_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP020922.1|WP_000108313.1|2722105_2722468_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP020922.1|WP_000210927.1|2722891_2724691_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP020922.1|WP_001290660.1|2724690_2726403_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP020922.1|WP_000080404.1|2726478_2727213_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP020922.1|WP_001145543.1|2727300_2728254_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP020922.1|WP_000029738.1|2728698_2731362_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP020922.1|WP_000368584.1|2731373_2732930_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP020922.1|WP_000117946.1|2732926_2733487_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP020922.1|WP_000206415.1|2733500_2734559_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA

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Crispr_ID: NZ_CP020922_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020922_3

2737255-2738425

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

18 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP020922_3

>merge|NZ_CP020922|3|2737255-2738425|PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATTATTCAACCCTCCAGGCTCGCGCCGGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTGGGCGTAGCCAGCTCATCGCTATTTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCGCGGAAAATTTCGCATTGACGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATTATCTGTATTTTACGGAAGTGGGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCGTTCATCAGGCACTACCGGCACTTTCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATATTCGCCGCTTTCCATTTACCGAACGTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACGTTCGGCGATGTTGGCCCCATCGGTCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACGGTAGTGTTTTAAAACCGTTTCGAGGTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCGTTTCCGCTAAATACCCCCGCAGTGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCTTGAATATGATTGCGGGTATATGTGGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTGGTTATAACATCGCAGCAAAATCAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGAGGTGCGAGCGATGGTATCAAGGCCTAGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP020922|3|2|2737255-2738364|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAAGGCGCGGTGCCACCCTCGGCTTTAATT
GTGTTCCCCGCGCCGACGCGTTCCAGCGC	ACGTTACTCGATCGTGTTCCCCGCGCCA
GCGGGGATAAACCGAGCCGTTTCCGCTAA	ATACCCCCGCAGTGATTGTGTTCCCCGCGCCA
GCGGGGATAAACCGTTCTTGAATATGATT	GCGGGTATATGTGGATAGTGTTCCCCGCGCCA
GCGGGGATAAACCGTCTGGTTATAACATC	GCAGCAAAATCAAAAGAGTGTTCCCCGCGCCA
GCGGGGATAAACCGTGACGAGGTGCGAGC	GATGGTATCAAGGCCTAGTGTTTCCCGCGCCA
GCGGGGATAAACCGGGTTAACCAGGGGTT	TTTCCCCACTATTTCGCGTGTTCCCCGCGCCA
GCGGGGATAAACCG

>NZ_CP020922|3|3|2737255-2737957|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATCGTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA


>NZ_CP020922|3|2|2737255-2737956|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATCGTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA


>NZ_CP020922|3|4|2738031-2738425|CRISPRCasFinder
	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATCGTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP020922|3|3|2738031-2738425|CRT
	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATCGTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020922.1\|WP_001518648.1\|2736864_2737158_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP020922.1\|WP_000517480.1\|2743251_2743563_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP020922.1\|WP_001173663.1\|2742080_2742686_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP020922.1\|WP_000144832.1\|2735944_2736865_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP020922.1\|WP_000134246.1\|2744767_2745817_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP020922.1\|WP_000029738.1\|2728698_2731362_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP020922.1\|WP_001092263.1\|2740654_2742094_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP020922.1\|WP_001145543.1\|2727300_2728254_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP020922.1\|WP_000117946.1\|2732926_2733487_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP020922.1\|WP_000281486.1\|2735297_2735948_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP020922.1\|WP_000368584.1\|2731373_2732930_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP020922.1\|WP_000490481.1\|2738439_2739486_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP020922.1\|WP_000085114.1\|2734569_2735316_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP020922.1\|WP_000372384.1\|2739736_2740645_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP020922.1\|WP_001219245.1\|2744291_2744771_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP020922.1\|WP_087526178.1\|2743581_2744292_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP020922.1\|WP_000206415.1\|2733500_2734559_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP020922.1\|WP_001221538.1\|2745797_2746559_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP020922.1\|WP_000080404.1\|2726478_2727213_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP020922.1\|WP_000253545.1\|2746552_2747179_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974

Protein	Function_ID	Function_description	E-value
NZ_CP020922.1\|WP_001518648.1\|2736864_2737158_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP020922.1\|WP_000517480.1\|2743251_2743563_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP020922.1\|WP_001173663.1\|2742080_2742686_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP020922.1\|WP_000144832.1\|2735944_2736865_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
NZ_CP020922.1\|WP_000134246.1\|2744767_2745817_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP020922.1\|WP_000029738.1\|2728698_2731362_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP020922.1\|WP_001092263.1\|2740654_2742094_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP020922.1\|WP_001145543.1\|2727300_2728254_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP020922.1\|WP_000117946.1\|2732926_2733487_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP020922.1\|WP_000281486.1\|2735297_2735948_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NZ_CP020922.1\|WP_000368584.1\|2731373_2732930_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP020922.1\|WP_000490481.1\|2738439_2739486_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP020922.1\|WP_000085114.1\|2734569_2735316_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
NZ_CP020922.1\|WP_000372384.1\|2739736_2740645_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP020922.1\|WP_001219245.1\|2744291_2744771_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP020922.1\|WP_087526178.1\|2743581_2744292_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.22883e-117
NZ_CP020922.1\|WP_000206415.1\|2733500_2734559_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP020922.1\|WP_001221538.1\|2745797_2746559_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP020922.1\|WP_000080404.1\|2726478_2727213_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP020922.1\|WP_000253545.1\|2746552_2747179_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	7.37904e-129

>NZ_CP020922.1|WP_001518648.1|2736864_2737158_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP020922.1|WP_000144832.1|2735944_2736865_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP020922.1|WP_000281486.1|2735297_2735948_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NZ_CP020922.1|WP_000085114.1|2734569_2735316_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP020922.1|WP_000206415.1|2733500_2734559_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP020922.1|WP_000117946.1|2732926_2733487_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP020922.1|WP_000368584.1|2731373_2732930_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP020922.1|WP_000029738.1|2728698_2731362_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP020922.1|WP_001145543.1|2727300_2728254_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP020922.1|WP_000080404.1|2726478_2727213_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP020922.1|WP_000490481.1|2738439_2739486_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP020922.1|WP_000372384.1|2739736_2740645_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP020922.1|WP_001092263.1|2740654_2742094_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP020922.1|WP_001173663.1|2742080_2742686_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP020922.1|WP_000517480.1|2743251_2743563_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP020922.1|WP_087526178.1|2743581_2744292_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATIADEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP020922.1|WP_001219245.1|2744291_2744771_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP020922.1|WP_000134246.1|2744767_2745817_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP020922.1|WP_001221538.1|2745797_2746559_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP020922.1|WP_000253545.1|2746552_2747179_+|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MVSGRVQALLEQLRAQGIRDEQVLNALAAVPREKFIDEAFEHKAWENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA

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Crispr_ID: NZ_CP020922_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020922_4

2929358-2929467

Orphan

Consensus_repeat	Method
TGTCCCACCCTGTACCACTTTTTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020922_4

>merge|NZ_CP020922|4|2929358-2929467|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTTAATCAAATTCTCTAAGGTGGGACGCTGTAACCCTCGCCAGCTCTGCGTGTACCACTTGTCCCACCCTGTACCACCTTTTTTTAA

>NZ_CP020922|4|5|2929358-2929467|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTTAA	TCAAATTCTCTAAGGTGGGACGCTGTAACCCTCGCCAGCTCTGCGTGTACCACT
TGTCCCACCCTGTACCACCTTTTTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020922.1\|WP_000533858.1\|2940833_2942243_-\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP020922.1\|WP_000701821.1\|2931589_2931805_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP020922.1\|WP_000480483.1\|2925305_2925827_-\|PTS-glucitol/sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
NZ_CP020922.1\|WP_000776032.1\|2920727_2921363_+\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
NZ_CP020922.1\|WP_010989057.1\|2937485_2938649_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP020922.1\|WP_010989063.1\|2934999_2935593_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020922.1\|WP_001033832.1\|2922933_2923947_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP020922.1\|WP_001098984.1\|2923957_2924938_-\|PTS-glucitol/sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
NZ_CP020922.1\|WP_000889012.1\|2921436_2922639_-\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|379021
NZ_CP020922.1\|WP_010989065.1\|2926318_2926675_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP020922.1\|WP_000973738.1\|2924934_2925309_-\|PTS-glucitol/sorbitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226254
NZ_CP020922.1\|WP_010989064.1\|2926828_2927647_-\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NZ_CP020922.1\|WP_000196159.1\|2938656_2940837_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NZ_CP020922.1\|WP_085341506.1\|2942307_2953782_-\|biofilm-associated-protein-BapA	unknown	unknown	gnl\|CDD\|375438
NZ_CP020922.1\|WP_001518569.1\|2954395_2954878_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_CP020922.1\|WP_085341505.1\|2929484_2931554_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
NZ_CP020922.1\|WP_001161781.1\|2932255_2933083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020922.1\|WP_000749979.1\|2925939_2926224_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
NZ_CP020922.1\|WP_000242603.1\|2955027_2955504_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	unknown	unknown	gnl\|CDD\|182678
NZ_CP020922.1\|WP_001682344.1\|2920140_2920704_+\|6-phospho-3-hexuloisomerase	unknown	unknown	gnl\|CDD\|132171

Protein	Function_ID	Function_description	E-value
NZ_CP020922.1\|WP_000701821.1\|2931589_2931805_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
NZ_CP020922.1\|WP_000480483.1\|2925305_2925827_-\|PTS-glucitol/sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
NZ_CP020922.1\|WP_000776032.1\|2920727_2921363_+\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	4.14833e-98
NZ_CP020922.1\|WP_010989057.1\|2937485_2938649_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.18004e-97
NZ_CP020922.1\|WP_085341506.1\|2942307_2953782_-\|biofilm-associated-protein-BapA	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	1.23685e-22
NZ_CP020922.1\|WP_001033832.1\|2922933_2923947_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.77409e-67
NZ_CP020922.1\|WP_001098984.1\|2923957_2924938_-\|PTS-glucitol/sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
NZ_CP020922.1\|WP_000889012.1\|2921436_2922639_-\|DUF3883-domain-containing-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	6.01438e-16
NZ_CP020922.1\|WP_010989065.1\|2926318_2926675_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.55924e-09
NZ_CP020922.1\|WP_000973738.1\|2924934_2925309_-\|PTS-glucitol/sorbitol-transporter-subunit-IIA	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	5.89598e-59
NZ_CP020922.1\|WP_010989064.1\|2926828_2927647_-\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.33424e-50
NZ_CP020922.1\|WP_000196159.1\|2938656_2940837_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP020922.1\|WP_001518569.1\|2954395_2954878_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	1.11352e-88
NZ_CP020922.1\|WP_085341505.1\|2929484_2931554_-\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
NZ_CP020922.1\|WP_000533858.1\|2940833_2942243_-\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	5.87074e-128
NZ_CP020922.1\|WP_000749979.1\|2925939_2926224_-\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
NZ_CP020922.1\|WP_000242603.1\|2955027_2955504_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	gnl\|CDD\|182678	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin.	9.22397e-113
NZ_CP020922.1\|WP_001682344.1\|2920140_2920704_+\|6-phospho-3-hexuloisomerase	gnl\|CDD\|132171	TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.	4.43418e-80

>NZ_CP020922.1|WP_010989064.1|2926828_2927647_-|DUF4435-domain-containing-protein
MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>NZ_CP020922.1|WP_010989065.1|2926318_2926675_+|helix-turn-helix-transcriptional-regulator
MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>NZ_CP020922.1|WP_000749979.1|2925939_2926224_-|transcriptional-regulator
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>NZ_CP020922.1|WP_000480483.1|2925305_2925827_-|PTS-glucitol/sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>NZ_CP020922.1|WP_000973738.1|2924934_2925309_-|PTS-glucitol/sorbitol-transporter-subunit-IIA
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>NZ_CP020922.1|WP_001098984.1|2923957_2924938_-|PTS-glucitol/sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>NZ_CP020922.1|WP_001033832.1|2922933_2923947_-|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>NZ_CP020922.1|WP_000889012.1|2921436_2922639_-|DUF3883-domain-containing-protein
MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNALSARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYYGKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQMFKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNWSNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYALNWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAFRFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVVRFDLEEPA
>NZ_CP020922.1|WP_000776032.1|2920727_2921363_+|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH
>NZ_CP020922.1|WP_001682344.1|2920140_2920704_+|6-phospho-3-hexuloisomerase
METQSVAGVACSDLNQAMSRIDGAALARLEQAIADAKAVFVFGAGRSLLMLKAFAMRLMHIGLKVHVVGDVVTPALQKGDLLLLASASGETASLVNVATKAKQLGGTVALLTIFPESTLGKLAGVAVRIPAYSDKLPDGPENVKGILPGGSLFEEAVMVLGDAMIVNLAQSTGYRLTKGFALHANLE
>NZ_CP020922.1|WP_085341505.1|2929484_2931554_-|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWWEICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>NZ_CP020922.1|WP_000701821.1|2931589_2931805_-|AlpA-family-transcriptional-regulator
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>NZ_CP020922.1|WP_001161781.1|2932255_2933083_+|hypothetical-protein
MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>NZ_CP020922.1|WP_010989063.1|2934999_2935593_-|hypothetical-protein
MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>NZ_CP020922.1|WP_010989057.1|2937485_2938649_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MDDPDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVARLDPTRLASNVGESAAKYRASLASSARLTAEVNDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALASVNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER
>NZ_CP020922.1|WP_000196159.1|2938656_2940837_-|type-I-secretion-system-permease/ATPase
MTRAAPDVEEVLSERALSQWAQAISYVAGHYRVACSPGSIQANAPWLRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELRDGQLLVIEHVNGEEAVDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSALKDSRVDRYISRFKPDWMRELVLQDIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYVLSFGVLVAVLFGFLLREARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQLRELEQIREMITSSTLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKKLAVLANQAAHEATLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQGLISWGMSVQSLVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARWQQVKAAKMGLDNIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLEIMPGERIAILGRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQNARLFFGTLRENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSGGQRQSLLLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPILELVERVVVLKEGQLVMDAPKAQALNADRMQSHRREWKNENQSA
>NZ_CP020922.1|WP_000533858.1|2940833_2942243_-|TolC-family-outer-membrane-protein
MGRVAPVAIVLAFALFHHQPRGAEAPPMITSEGLATDQMLPSLDGSAAELPLSAAAPGNLTLNDAVNRAVNWHPSIREAIGKLLAQNEQIEVAKSKYYPQVSAGVNNGYSNTYTDHGYSPSLVLSVSQMLYDFGKVASQVRAETAGAAQQQANVLLSIDTVAHETANAIVQTQSWQQMVEAAEEQLVALDSIGKLIRQRSDEGATSLSDVVQTEARIESARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPDDRLVPAVLAAWAQANVARANLDYASAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSTWVKVEMPLYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASALQILRRQQQLSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTESQLHQLQLNCLYNTGALRQAFALNHRSIQSVEIQP
>NZ_CP020922.1|WP_085341506.1|2942307_2953782_-|biofilm-associated-protein-BapA
MRLLAVVSKLTGVSTTVESSAVTLNAPSIVKLSVAREEISQLTRINQDLVVRLHSGETITIKNFYVTNDLGASQLVLAENDGTLWWVENPQAGLHFEQIADINELLVTSGASHEAGGAVWPWVLAGAVAAGGIAAIASSGGGDSHHHSDGDNPPPDNTNPDGNPPDNSNPGGSTPNGNTPGSSNPVDTTPPLAPGELLISADGKTVSGQAEAGSTITIKDPSGNVVGEGKADSDGKFSIDLTAPQISGEQLTVTATDDAGNTGPSATIDAPNIPLPDTPVITAAIDDAAPLTGTLSNNQFTNDNTPTLEGTGSAGTVIHIYANGQEIGSTTVDTSGNWHFAITSALADGENHFTAIATNVKGESSESARFTLTIDTLIPDAPRVELIADNTGLLTGPLQNNDRTDEAKPLFSGQGDAGNTITIKEGSTVIGSATVDENGRWTFTPTTPLSDGEHTFTVEQSDKAGNTSRVTTTPTIIVDTTPPDAAIIDNVAKDGTTVSGTAEAGSTVSIYDPAGNYLGSTITGENNHFSITLNPAQTHGERLEARIQDAVGNIGPATEFTASDSQYPAQPTILTVTDDAGAVTGLLKNGDATDDNRPTLSGTAEPGSTISINDNGFPVATFPPIVADADGKWSFTPSLALADGDHVFTATATNDRGTSGQSVSFTIDIDTQPPVLEGLAVSDVGDRLTGTTEAGSTVVIKDSLGNTLGSGTAGDDGTFSIGISPAKINGETLSISVTDKAANSGPVETLNAPDKTAPAAPDGLTVATDGLSVSGQAEAGATVTIRDSSNTVLGSAVANGNGQFIVPLNTAQTNGQALIATATDVAKNESAAATVIAPDSTAPEMPKNVVISEDGTSISGTAEPGSAITIATPDGKPLGSGKADGEGHFTLPLVPAQTNGEQVTVTATDSANNVSPPTTAQAPDITAPDKPIITQVLDDVESFTGPLVNGQTTNDNRPTLSGTAEAGARVEVFDNGFSLGLATLQPNGAWTFTPSQNLGEGAHRLTVIATDAKGNASQAASFDLVVDTQSPQQPVITFITDDAPGILGSVAHLGLTNDSTPTINGTGEPGSTVHLYQNGARIADIIVGNSGVWSYAYTTASPLADDTYTFTVTASDSNGNTTPFSTDFTITIDTQAPAAPGVIGVADGDGNTIDTNQITQESQPRLSGSGTAGDTIILYDNGNAIGQALVGTDGRWQFTPPAALGDGDHLLTARANDPAGNESPESISFTLRIDTQAPDAPQIVSAAITGGEGEVLLANGSITNQRMPTLSGTGEPGTIITLYNNGVELATVQVNPQGSWTYPLTRNLSEGLNILTATATDAAGNSSPTSGVFSVTLDTQPPAQPDAPLISDNVAPVIGNIGNNGATNDTTPTFSGTGEIGSTIILYNNGSEIGRTTVGDNGSWNFTPAALTPETYTITVTETDRAGNISPPSASVTFTLDTTAPANPVITFAEDNVGEVQDTIVSGATTDDNTPVIHGTGDIGSIITLYNGSSVLGVVTVDETGTWTLPVTSALPDGVYTLTAIAADAAGNSSGVSNSFTFTVDTVPLQPPVVNEILDDVAPVTGPLTDGAFTNDRTLTINGSGENGSTVTIYDNGVAIGTALVTDGVWTFNTPELSEASHALTFSATDDAGNTTAQTQPITITVDITAPPAPTVQTVDDDGTRVAGIADPYATVEIHHIDGTLVGSAVANGTGEFVVTLSPAQTDGGTLTAIAIDRAGNNGPATNFPASDSGLPAVPAITAIEDDVGSVQGNIAAGGATDDTTPTLRGTTDIGSTVEVFIDGDSAGFATVDASGNWIFEIATPLSESTHYFTVQATNANGPGGLSAPVGITVDLSAPAQPVITSATDDVPGMTGTLDNGALTNDSRPTLNGTGEAGATIRILDNGVEIGSATVDQSGNWRFTPNAPLESNAHIFTAVATDPAGNSGQPSDGFTLNIDAQAPDVPVITSVIDDNNQPTVPVLPGQSTDDRQPILNGTGEPGATITIFDNGTPLGTAQVGENGSWTFPVPRNLSEGSHNLTVSATDPAGNTSAVSAPWTIVVDITPPAIPVLTSVVDDQPGITGNLVSGQLTNDATPTLNGRGEAGATINVYLDGNPASIGTTTVNSDGTWSFTPQTPLANGSHTFTLSATDQAGNSSAVSSGFVLTIDATPPAAPVIASVADNTAPVTGIVPNGGSTNETRPTLSGTGEAGTTISIYNGSALVGTAQVQANGSWSFTPSTSLGAGVWNLTATATDAAGNTSAASEIRSFTIDTTAPAAPVIDTVYDGTGPITGNLSSGQITDEARPVISGTRETNTTIRLYDNGTLLAEIPADNSSSWRYTPDASLATGNHVITVIAVDAAGNASPVSDSVNFVVDTTPPLTPVITSVSDDQAPGLGTIANGQNTNDPTPTFSGTAEAGATITLYENGTVIGTTTAQPDGAWNVSTSTLASGTHVITAVATDAAGNSSPNSTAFTLTVDTTAPQTPILTSVVDDVAGGVTGNLANGQITNDNRPTLNGTAEAGSVVSIYDGDTLLGVTSANASGAWSFTPTTGLNDGTRTLTVTATDPAGNVSPATSGFTIVVDTLAPTVPLITSIVDDVPNNTGAIGNGQSTNDTQPTLNGTAEANSAVSIFDNGALVATVNANASGNWSWTPTAALGQGSHAYSVSAADAAGNVSAASPSITIIVDTIAPGAPGNLVINATGNRVTGTAEAGSTVTITSETGVVLGTATADGTGSFTATLTPAQTNGQPLLAFAQDKAGNTGIAAGFTAPDTRVPEAPIITNVVDDVGIYTGAIANGQVTNDAQPTLNGTAQAGATVSIYNNGALLGTTTANASGNWSFTPTGNLTEGSHAFTATATNANGTGSVSTAATVIVDTLAPGTPSGTLSADGGSLSGLAEANSTVTVTLTGGVTLTTTAGSNGAWSLTLPTKQIEGQLINVTATDAAGNASGTLGITAPVLPLAARDNITSLDLTSTAVTSTQNYSDYGLLLVGALGNVASVLGNDTAQVEFTIAEGGTGDVTIDAAATGIVLSLLSTQEIVVQRYDTSLGAWTTIVNTAVGDFANLLTLTGSGVTLNLSGLGEGQYRVLTYNTSLLATGSYTSLDVDVHQTSAGIISGPTISTGNVMADDTAPTGTTVTAITNANGVSTPVGAGGVDILGQYGTLHINQDGSYTYTLTKPTAGYGHKESFTYTITQNGVGSSAAQLVINLGPAPVPGSVIATDNNASLVFDTHVSYVNNGPSTQSGVTVLSVGLGNVLNANLLDDMTNPIIFNVEEGATRTMTLQGTVGGVSLVSTFDLYVYRFNDAIQQYEQFRVQKGWINTLLLAGQSQPLTLTLPGGEYLFVLNTASGISVLTGYTLAISQDHTYAVDSITANTTGNVLTNDVVPTDALLTEVNGVAIAATGTTEVNGLYGSLIIDARGNYTYTLKNGVGADSIKTPDSFIYTVKAPNGDTDTASLNITPTARALDAINDVSDTLSVATLQDTAAWLDSSVGSASWGLLGKSGSGSGTFDVATGTVLKGASLVFDVSTLITLGNLNISWAIQENGTVIRNGTVPVANITLGSATVTVNLSGLELDAGTYTLNFTGTNTLAGAATITPRVIGTTVDLDNFETSGTHTVLGNIFDGSDAAGAMDQLNTVNTRLSISGYNGSAATLDAAANTTSATIQGHYGTLQINLDGAYTYTLNNGVAMSSITSKEVFTYQLDDKMGHTDSATLTIDMAPQIVSTNQNDVLIGSAYGDTLIYHLLNGADATGGNGVDRWQNFSTAQGDKIDIHELLTGWDHQAATLGNFVQVHTSGANTVISVDRDGTGSAFKSTDLVTLENVQLTLNDLLQNNHLITSG
>NZ_CP020922.1|WP_001518569.1|2954395_2954878_-|SsrA-binding-protein-SmpB
MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKDGEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKNAGR
>NZ_CP020922.1|WP_000242603.1|2955027_2955504_+|type-II-toxin-antitoxin-system-RatA-family-toxin
MVLFTRFMLMGIAMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCVGSRVLESSPAQMTAAVDVSKAGISKTFTTRNQLTRNQSILMHLVDGPFKKLIGGWKFTPLSPEACRIEFQLDFEFTNKLIELAFGRIFKELASNMVQAFTVRAKEVYRAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020922_3	3.10\|2737834\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737834-2737865	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NZ_CP020922_3	3.10\|2737834\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737834-2737865	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NZ_CP020922_3	3.10\|2737834\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737834-2737865	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NZ_CP020922_3	3.13\|2738018\|28\|NZ_CP020922\|PILER-CR	2738018-2738045	28	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337987-338014	5	0.821
NZ_CP020922_3	3.8\|2737712\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737712-2737743	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NZ_CP020922_3	3.3\|2737406\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737406-2737437	32	MN693183	Marine virus AFVG_25M360, complete genome	30035-30066	7	0.781
NZ_CP020922_3	3.6\|2737590\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737590-2737621	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
NZ_CP020922_3	3.8\|2737712\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737712-2737743	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NZ_CP020922_3	3.8\|2737712\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737712-2737743	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NZ_CP020922_3	3.8\|2737712\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737712-2737743	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NZ_CP020922_3	3.8\|2737712\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737712-2737743	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NZ_CP020922_3	3.14\|2738075\|32\|NZ_CP020922\|PILER-CR	2738075-2738106	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NZ_CP020922_3	3.14\|2738075\|32\|NZ_CP020922\|PILER-CR	2738075-2738106	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NZ_CP020922_3	3.14\|2738075\|32\|NZ_CP020922\|PILER-CR	2738075-2738106	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NZ_CP020922_3	3.19\|2738060\|32\|NZ_CP020922\|CRISPRCasFinder,CRT	2738060-2738091	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NZ_CP020922_3	3.19\|2738060\|32\|NZ_CP020922\|CRISPRCasFinder,CRT	2738060-2738091	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NZ_CP020922_3	3.19\|2738060\|32\|NZ_CP020922\|CRISPRCasFinder,CRT	2738060-2738091	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NZ_CP020922_3	3.15\|2738136\|32\|NZ_CP020922\|PILER-CR	2738136-2738167	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NZ_CP020922_3	3.15\|2738136\|32\|NZ_CP020922\|PILER-CR	2738136-2738167	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NZ_CP020922_3	3.18\|2738319\|32\|NZ_CP020922\|PILER-CR	2738319-2738350	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NZ_CP020922_3	3.20\|2738121\|32\|NZ_CP020922\|CRISPRCasFinder,CRT	2738121-2738152	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NZ_CP020922_3	3.20\|2738121\|32\|NZ_CP020922\|CRISPRCasFinder,CRT	2738121-2738152	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NZ_CP020922_3	3.23\|2738304\|32\|NZ_CP020922\|CRISPRCasFinder,CRT	2738304-2738335	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NZ_CP020922_3	3.8\|2737712\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737712-2737743	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NZ_CP020922_2	2.5\|2721063\|32\|NZ_CP020922\|CRISPRCasFinder,CRT	2721063-2721094	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP020922_3	3.10\|2737834\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2737834-2737865	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NZ_CP020922_3	3.24\|2738365\|32\|NZ_CP020922\|CRISPRCasFinder,CRT	2738365-2738396	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NZ_CP020922_3	3.24\|2738365\|32\|NZ_CP020922\|CRISPRCasFinder,CRT	2738365-2738396	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NZ_CP020922_2	2.1\|2720819\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2720819-2720850	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1885546-1885577	11	0.656
NZ_CP020922_2	2.1\|2720819\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2720819-2720850	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	56201-56232	11	0.656
NZ_CP020922_2	2.1\|2720819\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2720819-2720850	32	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	83399-83430	11	0.656
NZ_CP020922_2	2.1\|2720819\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2720819-2720850	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1487158-1487189	11	0.656
NZ_CP020922_2	2.1\|2720819\|32\|NZ_CP020922\|PILER-CR,CRISPRCasFinder,CRT	2720819-2720850	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	597699-597730	11	0.656

1. spacer 3.10|2737834|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacgttcggcgatgttggccccatcggtccg	Protospacer
*******************************.

2. spacer 3.10|2737834|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacattcggcgatgttggccccatcggtcca	Protospacer
****.***************************

3. spacer 3.10|2737834|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ctacgttcggtgatgttggccccataggtcca	Protospacer
*.********.************** ******

4. spacer 3.13|2738018|28|NZ_CP020922|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gacgcgttccagcgcacgttactcgatc	CRISPR spacer
taatcgttccagcgcacgttcctcaatc	Protospacer
 *  **************** ***.***

5. spacer 3.8|2737712|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgg	Protospacer
 .  **********************  ****

6. spacer 3.3|2737406|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to MN693183 (Marine virus AFVG_25M360, complete genome) position: , mismatch: 7, identity: 0.781

ccattattcaaccctccaggctc-gcgccggct	CRISPR spacer
ccattattcaaccctccaaactctgaatccgc-	Protospacer
******************..*** * ..* **

7. spacer 3.6|2737590|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

acgccccgaatgtgtttgcctcgcccgctgcc	CRISPR spacer
gcgacctgaatgtgtttgcctcgcgccgtggc	Protospacer
.** **.***************** *  ** *

8. spacer 3.8|2737712|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

9. spacer 3.8|2737712|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

10. spacer 3.8|2737712|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

11. spacer 3.8|2737712|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

12. spacer 3.14|2738075|32|NZ_CP020922|PILER-CR matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

13. spacer 3.14|2738075|32|NZ_CP020922|PILER-CR matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

14. spacer 3.14|2738075|32|NZ_CP020922|PILER-CR matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

15. spacer 3.19|2738060|32|NZ_CP020922|CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

16. spacer 3.19|2738060|32|NZ_CP020922|CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

17. spacer 3.19|2738060|32|NZ_CP020922|CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

18. spacer 3.15|2738136|32|NZ_CP020922|PILER-CR matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

19. spacer 3.15|2738136|32|NZ_CP020922|PILER-CR matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

20. spacer 3.18|2738319|32|NZ_CP020922|PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

21. spacer 3.20|2738121|32|NZ_CP020922|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

22. spacer 3.20|2738121|32|NZ_CP020922|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

23. spacer 3.23|2738304|32|NZ_CP020922|CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

24. spacer 3.8|2737712|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
tgagttcatccggcactaccggcgctggatgc	Protospacer
   ******* ************.**   **

25. spacer 2.5|2721063|32|NZ_CP020922|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

26. spacer 3.10|2737834|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
actcgttcggcgatgtggcccccatccaggtg	Protospacer
 * ************* * ******* .  ..

27. spacer 3.24|2738365|32|NZ_CP020922|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

28. spacer 3.24|2738365|32|NZ_CP020922|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

29. spacer 2.1|2720819|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

30. spacer 2.1|2720819|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

31. spacer 2.1|2720819|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgactcgatcgccttccagaccaaccttctgg	Protospacer
.   .***** ************ ****.  .

32. spacer 2.1|2720819|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

33. spacer 2.1|2720819|32|NZ_CP020922|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

540178 : 596958

Salmonella_phage(49.23%)

portal,holin,lysis,integrase,transposase,terminase,coat,protease

attL 543695:543711|attR 606173:606189

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000502119.1\|540178_540637_-\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_001247039.1\|541099_541858_+	fimbrial assembly chaperone	NA	NA	NA	NA
WP_000766837.1\|541904_542303_-	outer membrane protein	NA	NA	NA	NA
WP_001675688.1\|542993_543266_+	hypothetical protein	B8K1I9	Salmonella_phage	5.4e-07	60.9
WP_000859023.1\|543210_544176_-	LysR family transcriptional regulator	NA	NA	NA	NA
543695:543711	attL	NA	NA	NA	NA
WP_000105593.1\|544209_545124_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000780210.1\|545123_546002_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_000379343.1\|546016_546643_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_001274854.1\|546644_548066_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_012543325.1\|548197_549436_-	MFS transporter	NA	NA	NA	NA
WP_001539227.1\|549776_550100_-	DUF1889 family protein	NA	NA	NA	NA
WP_126790267.1\|552624_552900_+	GtrA family protein	A0A1R3Y5Q2	Salmonella_virus	1.6e-43	96.7
WP_024143049.1\|552971_554894_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	0.0e+00	97.2
WP_020899468.1\|554929_556900_-	hypothetical protein	T1SBJ2	Salmonella_phage	3.8e-304	96.6
WP_031306894.1\|557011_557785_-	ORF6N domain-containing protein	H6WRU9	Salmonella_phage	8.0e-80	66.1
WP_031306893.1\|557868_558507_-	hypothetical protein	H6WRU8	Salmonella_phage	5.3e-98	84.0
WP_023972978.1\|558580_558754_-	hypothetical protein	NA	NA	NA	NA
WP_023972977.1\|558853_559495_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023167446.1\|559555_559885_+	hypothetical protein	NA	NA	NA	NA
WP_023167447.1\|559902_561720_-	hypothetical protein	A0A2H4FNB8	Salmonella_phage	4.1e-276	93.3
WP_023893010.1\|561719_563090_-	phage DNA ejection protein	A0A1R3Y5Q4	Salmonella_virus	1.3e-242	97.4
WP_023167449.1\|563099_563789_-	hypothetical protein	A0A1R3Y5P8	Salmonella_virus	1.4e-88	98.3
WP_000627703.1\|563791_564247_-	DUF2824 family protein	E7C9U3	Salmonella_phage	1.8e-87	100.0
WP_023167450.1\|564246_564948_-	hypothetical protein	C6ZR14	Salmonella_phage	2.8e-76	97.9
WP_001122424.1\|564951_566370_-	packaged DNA stabilization protein gp10	A0A075B8I2	Enterobacteria_phage	7.6e-278	100.0
WP_001166098.1\|566329_566830_-	packaged DNA stabilization protein p27	I1TEJ0	Salmonella_phage	5.5e-90	99.4
WP_023167451.1\|566813_567374_-	hypothetical protein	I6S1J7	Salmonella_phage	1.6e-101	98.4
WP_023893008.1\|567414_568707_-\|coat	coat protein	I1TEI8	Salmonella_phage	1.4e-241	99.1
WP_023167453.1\|568706_569618_-	scaffolding protein	A0A192Y6T4	Salmonella_phage	1.1e-160	99.7
WP_023170969.1\|569631_571809_-\|portal	portal protein	A0A2H4FNE2	Salmonella_phage	0.0e+00	99.4
WP_023893007.1\|571808_573308_-\|terminase	terminase	A0A2H4FUR5	Salmonella_phage	1.1e-306	99.8
WP_000729925.1\|573285_573774_-	hypothetical protein	O80290	Bacteriophage	2.9e-88	100.0
WP_012532521.1\|573777_574182_-	hypothetical protein	A0A192Y6U9	Salmonella_phage	1.5e-66	99.3
WP_000808100.1\|574184_574427_-	DUF2560 family protein	A0A192Y6S9	Salmonella_phage	1.0e-33	100.0
WP_001028469.1\|574750_575272_-	KilA-N domain-containing protein	H6WRZ8	Salmonella_phage	1.9e-101	100.0
WP_011233123.1\|575484_575934_-\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	3.0e-63	87.8
WP_001167374.1\|575951_576389_-	lysozyme	Q5G8R3	Enterobacteria_phage	6.3e-74	97.9
WP_000738703.1\|576372_576699_-\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
WP_001235452.1\|577133_577757_-	antitermination protein	K7PM87	Enterobacteria_phage	8.3e-96	87.0
WP_023170970.1\|577753_577933_-	hypothetical protein	A0A1V0E5I7	Salmonella_phage	4.6e-23	98.3
WP_000149925.1\|577913_578117_-	protein ninH	A0A075B8J4	Enterobacteria_phage	7.2e-33	100.0
WP_001748048.1\|578113_578338_-	hypothetical protein	Q5G8R9	Enterobacteria_phage	2.4e-37	98.6
WP_001129733.1\|578334_578946_-	recombination protein NinG	A0A075B8E9	Enterobacteria_phage	1.3e-98	100.0
WP_000950959.1\|578938_579115_-	protein ninF	I6S668	Salmonella_phage	2.5e-26	100.0
WP_001531428.1\|579107_579440_-	DUF2591 domain-containing protein	A0A075B8G3	Enterobacteria_phage	3.5e-61	100.0
WP_000113772.1\|579442_579619_-	NinE family protein	I6RSQ2	Salmonella_phage	4.6e-28	100.0
WP_024140156.1\|579585_579759_-	hypothetical protein	Q8HAF7	Salmonella_phage	7.5e-31	96.5
WP_001748047.1\|579755_580202_-	recombination protein NinB	I6R0N7	Salmonella_phage	8.6e-79	96.6
WP_023170971.1\|580158_580377_-	restriction alleviation protein, Lar family	A0A0P0ZEB1	Stx2-converting_phage	1.9e-10	50.0
WP_024159706.1\|580379_580643_-	hypothetical protein	I6R992	Salmonella_phage	5.0e-42	95.3
WP_001750243.1\|580654_580849_-	hypothetical protein	NA	NA	NA	NA
WP_023170974.1\|580863_581070_-	hypothetical protein	A0A192Y802	Salmonella_phage	1.2e-30	97.1
WP_000158322.1\|581141_581420_-	hypothetical protein	Q5G8S7	Enterobacteria_phage	8.7e-45	96.6
WP_001248406.1\|581416_582793_-	DNA helicase	A0A075B8G2	Enterobacteria_phage	3.3e-254	100.0
WP_000067075.1\|582789_583605_-	replication protein	A0A075B8J2	Enterobacteria_phage	9.4e-148	100.0
WP_001125981.1\|583597_583744_-	DUF2740 family protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
WP_000424167.1\|583778_584057_-	transcriptional regulator	Q5G8T2	Enterobacteria_phage	2.5e-44	100.0
WP_000276884.1\|584163_584349_-	Cro/Cl family transcriptional regulator	Q5G8T3	Enterobacteria_phage	5.4e-27	100.0
WP_001095984.1\|584429_585080_+	LexA family transcriptional regulator	B1B6L9	Salmonella_phage	5.4e-122	100.0
WP_023893006.1\|585433_585736_+	hypothetical protein	B8K1E6	Salmonella_phage	3.1e-48	97.0
WP_001682202.1\|585756_586335_-	super-infection exclusion protein B	A0A075B8E6	Enterobacteria_phage	8.8e-92	100.0
WP_087526167.1\|586527_587142_+	pentapeptide repeat-containing protein	B9UDG8	Salmonella_phage	3.1e-42	73.5
WP_023167636.1\|587458_587632_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	I6R987	Salmonella_phage	2.4e-21	94.2
WP_000156731.1\|587612_587801_+	DUF5444 family protein	I6S647	Salmonella_phage	3.7e-31	100.0
WP_058685122.1\|587790_587934_+	hypothetical protein	A0A1R3Y5R4	Salmonella_virus	3.5e-18	93.6
WP_023167638.1\|587930_588638_+	hypothetical protein	I6R0N0	Salmonella_phage	2.2e-137	99.1
WP_001253478.1\|588637_588922_+	Anti-RecBCD protein 1	E7C9P9	Salmonella_phage	1.5e-44	97.9
WP_022630922.1\|588968_589262_+	DUF2856 family protein	Q5G8U3	Enterobacteria_phage	3.8e-43	87.6
WP_023167639.1\|589272_589437_+	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	5.5e-23	98.1
WP_022630920.1\|589433_589832_+	hypothetical protein	A0A222YY85	Escherichia_phage	3.5e-31	72.0
WP_022630919.1\|589828_590128_+	hypothetical protein	A5VWB2	Enterobacteria_phage	3.1e-56	96.0
WP_022630918.1\|590129_590579_+	ead/Ea22-like family protein	Q716F4	Shigella_phage	2.7e-48	85.3
WP_022630917.1\|590578_591052_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	3.3e-68	79.5
WP_153266261.1\|591518_591659_+	hypothetical protein	A0A0M4QWX3	Salmonella_phage	3.2e-16	100.0
WP_022630914.1\|591888_593052_+\|integrase	site-specific integrase	A0A220NQU7	Salmonella_phage	2.1e-225	98.2
WP_000893231.1\|593257_594508_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
WP_001285275.1\|594519_595623_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_001043675.1\|595905_596958_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5
606173:606189	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1352524 : 1395293

Burkholderia_phage(45.0%)

plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001182237.1\|1352524_1353523_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_001039339.1\|1353610_1354921_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416272.1\|1355167_1355683_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|1355781_1355991_-	CsbD family protein	NA	NA	NA	NA
WP_010989093.1\|1356012_1356126_-	hypothetical protein	NA	NA	NA	NA
WP_001128116.1\|1356122_1357448_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|1357626_1358235_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002902.1\|1358343_1358712_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|1358882_1361303_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|1361401_1362274_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019219.1\|1362287_1362785_-	chorismate lyase	NA	NA	NA	NA
WP_000782504.1\|1362965_1363883_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973645.1\|1364046_1365405_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|1365493_1366603_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000695417.1\|1366964_1368155_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000382573.1\|1368286_1369831_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252085.1\|1369845_1370736_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982749.1\|1370901_1371312_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_071953675.1\|1371454_1373551_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977979.1\|1373550_1374288_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_022742863.1\|1374284_1374953_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|1374986_1375229_-	outer membrane protein	NA	NA	NA	NA
WP_000790037.1\|1375672_1377322_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_085341482.1\|1377666_1379016_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615248.1\|1379148_1379496_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226442.1\|1380071_1380359_+	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_001270441.1\|1380361_1380967_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_000777266.1\|1380979_1381294_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000875314.1\|1381904_1382102_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000729852.1\|1382091_1383519_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000907494.1\|1383518_1384043_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003642.1\|1384094_1384412_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|1384371_1384500_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_085341483.1\|1384596_1386951_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.2e-65	30.6
WP_000271423.1\|1386950_1387904_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001269716.1\|1387903_1388113_+\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000818154.1\|1388100_1389144_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_000679398.1\|1389153_1389876_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
WP_000593182.1\|1390203_1390566_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703632.1\|1390562_1391492_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	8.8e-150	83.8
WP_001095011.1\|1391491_1393039_+	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
WP_001093501.1\|1393202_1393562_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000951736.1\|1393552_1394668_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
WP_000359500.1\|1394660_1395293_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4

DBSCAN-SWA_3

2992850 : 3069046

Salmonella_phage(36.84%)

holin,portal,lysis,tail,transposase,terminase,head,capsid,integrase,tRNA,protease

attL 2984931:2984947|attR 3074892:3074908

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2984931:2984947	attL	NA	NA	NA	NA
WP_000997368.1\|2992850_2993888_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_000179978.1\|2994003_2994693_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000627811.1\|2995011_2995395_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000188414.1\|2995456_2996044_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_001526875.1\|2996146_2997046_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000219174.1\|2997063_2998398_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_000083343.1\|2998528_2999266_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000989177.1\|2999250_3000873_-	L-aspartate oxidase	NA	NA	NA	NA
WP_014344135.1\|3001136_3001301_+	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000003307.1\|3001297_3001873_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001168374.1\|3001904_3002555_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000812017.1\|3002554_3003511_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_000589087.1\|3003507_3003987_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_001007939.1\|3004484_3005714_+\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	2.9e-233	94.4
WP_001670787.1\|3005691_3005976_-	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
WP_001237031.1\|3006016_3006256_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_077248255.1\|3006298_3007456_-	recombinase RecT	S4TTE8	Salmonella_phage	3.9e-216	99.5
WP_000017125.1\|3007418_3010346_-	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	99.3
WP_080069573.1\|3010472_3010823_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	3.7e-61	98.3
WP_000917562.1\|3010844_3011003_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_000373338.1\|3011401_3011608_+	hypothetical protein	K7P7I0	Enterobacteria_phage	1.6e-16	67.6
WP_023224301.1\|3011636_3012746_-	AAA family ATPase	E7C9Q8	Salmonella_phage	1.2e-118	58.4
WP_085341529.1\|3012884_3013352_-	helix-turn-helix domain-containing protein	K7PHG0	Enterobacteria_phage	7.4e-65	86.1
WP_000145711.1\|3013365_3013593_+	helix-turn-helix domain-containing protein	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
WP_072143007.1\|3013558_3013933_+	hypothetical protein	S4TTD7	Salmonella_phage	2.8e-62	97.6
WP_085341528.1\|3014024_3014909_+	replication protein	K7PGT1	Enterobacteria_phage	1.3e-46	47.2
WP_000801764.1\|3014905_3015601_+	hypothetical protein	G8C7U6	Escherichia_phage	2.1e-55	45.4
WP_000664368.1\|3015614_3016313_+	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	2.1e-63	85.7
WP_000877757.1\|3016420_3017053_+	hypothetical protein	NA	NA	NA	NA
WP_001217669.1\|3017295_3017529_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_014343878.1\|3017645_3017894_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_000929791.1\|3017928_3018531_+	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
WP_001096550.1\|3018739_3019351_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
WP_000801757.1\|3019347_3019488_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001097241.1\|3019484_3020162_+	antitermination protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
WP_000211410.1\|3020434_3020998_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_000657897.1\|3021504_3021693_+	hypothetical protein	NA	NA	NA	NA
WP_001110783.1\|3021907_3022594_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_001574216.1\|3022869_3023199_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984581.1\|3023182_3023635_+	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001533543.1\|3023652_3024105_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000669690.1\|3024339_3024741_-	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA
WP_001102153.1\|3025027_3025573_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000623091.1\|3025544_3027476_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_000201415.1\|3027459_3027663_+	gpW family protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000831821.1\|3027659_3029240_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_001189503.1\|3029229_3030726_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000011260.1\|3030738_3031086_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_000522566.1\|3031140_3032169_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000201486.1\|3032226_3032586_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_000083294.1\|3032596_3032980_+\|head,tail	head-tail joining protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
WP_000677089.1\|3033007_3033586_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000817263.1\|3033634_3034765_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
WP_000033885.1\|3034873_3035275_+\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000971954.1\|3035282_3036029_+	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000479607.1\|3036079_3036475_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_010989052.1\|3036471_3036810_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000372072.1\|3036781_3039877_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
WP_000447369.1\|3039879_3040209_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_000662739.1\|3040923_3041661_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_000246126.1\|3041558_3042206_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000514917.1\|3042267_3045630_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
WP_000178853.1\|3045668_3045911_+	hypothetical protein	NA	NA	NA	NA
WP_014344380.1\|3045964_3048337_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.3
WP_000593433.1\|3048333_3049158_+	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_000143154.1\|3049147_3049726_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
WP_010989049.1\|3049822_3050050_-	PagK-like protein	NA	NA	NA	NA
WP_001738443.1\|3050156_3050369_+	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
WP_001526383.1\|3051121_3051241_+\|transposase	transposase	NA	NA	NA	NA
WP_001542312.1\|3051953_3052091_-	hypothetical protein	NA	NA	NA	NA
WP_010989047.1\|3052569_3054063_-	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
WP_000790154.1\|3054467_3056267_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_000002559.1\|3056283_3057258_+	signal peptidase I	NA	NA	NA	NA
WP_001068341.1\|3057531_3058212_+	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000102232.1\|3058208_3059114_+	GTPase Era	NA	NA	NA	NA
WP_000399380.1\|3059125_3059854_+	DNA repair protein RecO	NA	NA	NA	NA
WP_000818972.1\|3059865_3060597_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000986043.1\|3060596_3060977_+	holo-ACP synthase	NA	NA	NA	NA
WP_001196290.1\|3061088_3061349_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
WP_001022463.1\|3061386_3062313_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
WP_001276365.1\|3062428_3063625_+	OFA family MFS transporter	NA	NA	NA	NA
WP_000684022.1\|3063646_3064564_+	oxidoreductase	NA	NA	NA	NA
WP_000995703.1\|3064602_3065451_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000361663.1\|3066469_3067831_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_000253558.1\|3067834_3068470_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001134566.1\|3068494_3069046_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
3074892:3074908	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3422480 : 3452072

Salmonella_phage(41.67%)

protease,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000781589.1\|3422480_3422975_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_000228070.1\|3423388_3423880_+	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_001260058.1\|3423869_3424133_+	chaperone NapD	NA	NA	NA	NA
WP_000778097.1\|3424129_3426616_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_000091673.1\|3426622_3427318_+	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_000013529.1\|3427304_3428174_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_000835182.1\|3428289_3428739_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_000431778.1\|3428748_3429351_+	cytochrome c-type protein NapC	NA	NA	NA	NA
WP_000888528.1\|3429371_3429989_+	cytochrome c biogenesis heme-transporting ATPase CcmA	A0A2R8FG22	Brazilian_cedratvirus	3.1e-10	29.8
WP_000990028.1\|3429985_3430645_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_000266008.1\|3430696_3431434_+	heme ABC transporter permease	NA	NA	NA	NA
WP_000074110.1\|3431430_3431643_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_087526174.1\|3431639_3432119_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_000982518.1\|3432115_3434047_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_000828296.1\|3434043_3434601_+	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA
WP_001238333.1\|3434597_3435641_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_001115498.1\|3435684_3436332_-	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA
WP_000281877.1\|3437061_3437625_+	acyloxyacyl hydrolase	NA	NA	NA	NA
WP_001653202.1\|3437816_3438020_-	virulence protein MsgA	NA	NA	NA	NA
WP_000624225.1\|3438322_3439114_+\|tail	tail fiber protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6
WP_001113462.1\|3439410_3439614_+\|tail	tail protein	NA	NA	NA	NA
WP_001202279.1\|3442476_3443466_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
WP_010989045.1\|3443480_3443849_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
WP_000894640.1\|3443877_3445209_-	AAA family ATPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
WP_001120499.1\|3445505_3445835_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
WP_000554739.1\|3446427_3447669_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
WP_001215679.1\|3447671_3448199_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
WP_000022213.1\|3448576_3449020_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
WP_000639473.1\|3449073_3450903_-	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
WP_000884778.1\|3451250_3451541_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_000806401.1\|3451568_3452072_+	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_5

3524124 : 3533295

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|3524124_3525072_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824855.1\|3525055_3525787_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|3525767_3525875_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|3525934_3526666_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272845.1\|3526888_3528574_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_000598637.1\|3528570_3529290_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|3529336_3529804_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197952.1\|3529860_3530391_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|3530562_3531021_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195332.1\|3531261_3533295_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_6

3601601 : 3612107

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111841.1\|3601601_3603005_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1
WP_000981469.1\|3603182_3604076_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697840.1\|3604452_3605538_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_001023662.1\|3605537_3606437_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000857529.1\|3606484_3607363_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
WP_000973708.1\|3607363_3607915_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
WP_000018226.1\|3607920_3608913_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648784.1\|3608909_3609683_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565905.1\|3609687_3610767_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
WP_000126349.1\|3610793_3612107_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_7

3698099 : 3748165

Salmonella_phage(86.15%)

plate,portal,holin,tail,terminase,head,capsid,integrase,protease

attL 3692677:3692691|attR 3708807:3708821

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3692677:3692691	attL	NA	NA	NA	NA
WP_001219015.1\|3698099_3698573_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
WP_000598920.1\|3699882_3700680_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000532847.1\|3700971_3701961_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
WP_001527041.1\|3701962_3702190_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	3.2e-37	100.0
WP_001061334.1\|3702229_3702799_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
WP_020899398.1\|3702802_3703384_-	hypothetical protein	A0A192Y6F5	Salmonella_phage	4.7e-109	100.0
WP_000224241.1\|3703394_3703652_-	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
WP_000215886.1\|3703653_3704187_-	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
WP_000008351.1\|3704257_3704797_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_000080416.1\|3704933_3705761_-	DUF2303 family protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
WP_000997191.1\|3705818_3706190_-	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
WP_023891434.1\|3706729_3706954_+	hypothetical protein	A0A1C9IHY8	Salmonella_phage	1.6e-33	100.0
WP_001067432.1\|3706916_3707255_-	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
WP_001020636.1\|3707460_3708156_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
WP_001191666.1\|3708253_3708478_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_000509731.1\|3708506_3709061_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
3708807:3708821	attR	NA	NA	NA	NA
WP_001087402.1\|3709057_3710215_+	Rha family phage regulatory protein	Q8HA97	Salmonella_phage	4.2e-218	100.0
WP_000620702.1\|3710211_3710436_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_000061500.1\|3710432_3711251_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.8e-136	100.0
WP_001684745.1\|3711252_3711735_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.1e-87	100.0
WP_000066908.1\|3711734_3712628_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.6e-175	100.0
WP_001241579.1\|3712624_3713014_+	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	3.7e-70	100.0
WP_020899399.1\|3713030_3713891_+	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	8.4e-163	99.7
WP_020899400.1\|3713898_3714888_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	4.0e-193	99.1
WP_020899401.1\|3714901_3715654_+	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-145	100.0
WP_001624505.1\|3715804_3716062_+	hypothetical protein	A0A1C9IHX4	Salmonella_phage	3.1e-41	100.0
WP_001283169.1\|3716207_3716594_+\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
WP_000422366.1\|3716580_3716862_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
WP_001624504.1\|3716861_3717476_+	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.7e-113	100.0
WP_001530346.1\|3717472_3717865_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.8e-65	100.0
WP_001379492.1\|3718327_3718660_+	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
WP_001135098.1\|3718710_3719061_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
WP_000929171.1\|3719186_3719681_+\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	1.7e-88	100.0
WP_000088175.1\|3719677_3721411_+\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.3
WP_000605609.1\|3721422_3721605_+	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_020899404.1\|3721604_3722846_+\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.9e-241	99.3
WP_001193639.1\|3722823_3723474_+\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	1.5e-119	100.0
WP_000257526.1\|3723488_3724694_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	7.0e-224	100.0
WP_000601352.1\|3724744_3724945_+	hypothetical protein	A0A192Y7K5	Salmonella_phage	1.8e-28	100.0
WP_000927378.1\|3724947_3725271_+\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
WP_000702410.1\|3725267_3725672_+\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	3.2e-72	100.0
WP_023892996.1\|3725643_3726156_+	hypothetical protein	A0A192Y6D2	Salmonella_phage	1.3e-91	99.4
WP_000779216.1\|3726152_3726713_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	8.0e-106	100.0
WP_000497740.1\|3726716_3726881_+	DUF2635 domain-containing protein	A0A1C9II04	Salmonella_phage	1.3e-24	100.0
WP_001007996.1\|3726870_3728367_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A192Y7L1	Salmonella_phage	2.1e-278	100.0
WP_000515952.1\|3728366_3728723_+\|tail	phage tail tube protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_022742746.1\|3728752_3729046_+	hypothetical protein	A0A192Y6C5	Salmonella_phage	2.6e-47	100.0
WP_000785390.1\|3729130_3731059_+\|tail	phage tail tape measure protein	A0A192Y6D8	Salmonella_phage	0.0e+00	100.0
WP_000863827.1\|3731092_3732433_+	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	5.2e-252	100.0
WP_001066630.1\|3732429_3733488_+\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	1.3e-202	100.0
WP_001273648.1\|3733487_3734021_+\|plate	phage baseplate assembly protein	A0A192Y8K5	Salmonella_phage	8.4e-97	100.0
WP_000605051.1\|3734025_3734439_+	phage GP46 family protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
WP_000785578.1\|3734431_3735511_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.9e-205	100.0
WP_001207832.1\|3735513_3736101_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_020899405.1\|3736087_3737650_+	hypothetical protein	A0A192Y7M1	Salmonella_phage	1.0e-288	100.0
WP_022742744.1\|3737619_3738225_+\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
WP_000836773.1\|3738338_3738572_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
WP_122815478.1\|3738646_3738760_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	4.3e-11	100.0
WP_000842532.1\|3738807_3739221_-	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
WP_001093793.1\|3739217_3739430_-	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
WP_000500831.1\|3740623_3740785_+	hypothetical protein	NA	NA	NA	NA
WP_000394196.1\|3740911_3741331_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_071953501.1\|3741333_3742602_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	2.7e-226	91.9
WP_000208509.1\|3743056_3743269_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131109.1\|3743279_3743468_+	hypothetical protein	NA	NA	NA	NA
WP_001080680.1\|3743728_3744925_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
WP_000107430.1\|3745574_3745874_+	membrane protein	NA	NA	NA	NA
WP_000377041.1\|3745965_3746661_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_001157322.1\|3746734_3748165_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_8

3852208 : 3859017

Salmonella_phage(33.33%)

integrase,tail

attL 3854418:3854440|attR 3864133:3864155

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000856224.1\|3852208_3852439_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_000168393.1\|3852576_3852951_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000979702.1\|3852951_3853827_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|3853843_3854197_+	YebY family protein	NA	NA	NA	NA
3854418:3854440	attL	NA	NA	NA	NA
WP_001520095.1\|3854570_3855425_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
WP_010989030.1\|3855484_3855979_-	hypothetical protein	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
WP_001013467.1\|3856168_3856399_+	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_001050882.1\|3856452_3856986_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
WP_000789530.1\|3857242_3857410_-	lytic enzyme	NA	NA	NA	NA
WP_001521334.1\|3857474_3857663_-	hypothetical protein	NA	NA	NA	NA
WP_000275418.1\|3858135_3859017_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
3864133:3864155	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4643629 : 4742435

Salmonella_phage(41.82%)

portal,holin,lysis,tail,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938191.1\|4643629_4644310_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6
WP_000374050.1\|4644930_4645590_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
WP_000904446.1\|4645676_4646006_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|4646002_4646284_-	acylphosphatase	NA	NA	NA	NA
WP_000548082.1\|4646332_4647112_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000859419.1\|4647137_4647686_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140480.1\|4647900_4649112_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|4649169_4649487_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|4649531_4649945_-	CoA-binding protein	NA	NA	NA	NA
WP_000847719.1\|4650118_4650781_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|4650875_4651334_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420505.1\|4651369_4653424_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_001261222.1\|4653547_4653994_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950880.1\|4654012_4656166_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|4656152_4656758_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|4656974_4657484_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001674965.1\|4657840_4658893_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|4658964_4659417_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156454.1\|4659602_4661363_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|4661431_4661950_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|4662049_4662217_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|4662472_4663036_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433414.1\|4663032_4664673_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|4664677_4665931_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|4665945_4667853_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_001086485.1\|4667865_4669974_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224069.1\|4670072_4671182_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001220671.1\|4671178_4671721_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291723.1\|4671886_4672897_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193784.1\|4673104_4675717_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000497441.1\|4676143_4676335_+	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000334547.1\|4677644_4678271_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_001533476.1\|4678918_4679887_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
WP_000143167.1\|4680362_4680944_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001144679.1\|4680943_4683382_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
WP_000178849.1\|4683435_4683678_-	hypothetical protein	NA	NA	NA	NA
WP_170919158.1\|4683716_4684592_-	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	1.1e-48	77.1
WP_000246065.1\|4687136_4687841_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_000606351.1\|4687738_4688476_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_001152415.1\|4688485_4689181_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000877926.1\|4689270_4689804_+	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_071953433.1\|4689920_4690418_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	8.0e-09	30.0
WP_000978296.1\|4690516_4690849_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
WP_010989010.1\|4690845_4693833_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
WP_010989009.1\|4693912_4694242_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_000478859.1\|4694238_4694637_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_071953432.1\|4694682_4695432_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.4e-89	68.2
WP_000196702.1\|4695443_4695845_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
WP_085341525.1\|4695841_4696408_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
WP_000774239.1\|4696388_4696688_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_001107908.1\|4696680_4697004_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_010989008.1\|4697094_4699176_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_001009207.1\|4699099_4700647_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	2.8e-177	64.3
WP_000196190.1\|4700643_4700850_-	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_000371784.1\|4702942_4703476_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_001541990.1\|4703683_4704163_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000984586.1\|4704180_4704633_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001574216.1\|4704616_4704946_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_080090202.1\|4705221_4705908_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	7.9e-132	99.6
WP_000798705.1\|4706268_4706718_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|4706853_4706979_-	hypothetical protein	NA	NA	NA	NA
WP_010989004.1\|4707152_4707470_-	hypothetical protein	NA	NA	NA	NA
WP_001047631.1\|4707536_4708334_-	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
WP_001617856.1\|4708323_4708470_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096552.1\|4708466_4709078_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
WP_000929805.1\|4709286_4709889_-	DUF1367 family protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
WP_001217665.1\|4710303_4710537_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_010989003.1\|4710828_4711119_-	hypothetical protein	NA	NA	NA	NA
WP_000065108.1\|4711196_4711508_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_000113629.1\|4711504_4711852_-	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000800010.1\|4711862_4712612_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000062941.1\|4712614_4713598_-	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_001574095.1\|4713682_4714057_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000370145.1\|4714022_4714262_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001038966.1\|4714381_4714792_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_078008757.1\|4714841_4715102_+	hypothetical protein	NA	NA	NA	NA
WP_000917564.1\|4715094_4715253_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_079821108.1\|4715274_4715574_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	2.4e-48	83.6
WP_000017133.1\|4715700_4718586_+	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	97.3
WP_001539618.1\|4718548_4719706_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|4719748_4719988_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|4720028_4720277_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262306.1\|4720321_4721614_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000191399.1\|4721808_4723011_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_071953431.1\|4724768_4725983_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000762342.1\|4726299_4726761_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000117870.1\|4726961_4728362_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000977713.1\|4728968_4730060_+	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
WP_000462653.1\|4730244_4731435_+	aspartate transaminase	NA	NA	NA	NA
WP_001109471.1\|4731496_4732144_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000357052.1\|4732171_4732720_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_000925872.1\|4732979_4734821_-	L,D-transpeptidase	NA	NA	NA	NA
WP_085341507.1\|4735165_4739632_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_000060025.1\|4739631_4740336_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288828.1\|4740316_4741639_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001154025.1\|4741631_4742435_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_10

4792497 : 4801229

Enterobacteria_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085983316.1\|4792497_4793752_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
WP_000502119.1\|4794215_4794674_-\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_071953427.1\|4794865_4797142_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|4797172_4797493_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|4797816_4798038_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125877.1\|4798167_4800114_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_001201751.1\|4800110_4801229_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP020924

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020924_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020924_1

30569-30677

Orphan

Consensus_repeat	Method
ACCATAAATCTGTCCCTCTTTGACCATAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020924_1

>merge|NZ_CP020924|1|30569-30677|CRISPRCasFinder
ACACTAAATCTGTCCCCTTTTGACCATAAATCTGTCCCTCTTTGACCATAAATTTGTCCCCAGATAAAAACGCCAAGAACCATAAATCTGTCCCTTTTTAACCATAAAT

>NZ_CP020924|1|1|30569-30677|CRISPRCasFinder
ACACTAAATCTGTCCCCTTTTGACCATAAAT	CTGTCCCTCTTTGACCATAAATTTGTCCCCAGATAAAAACGCCAAGA
ACCATAAATCTGTCCCTTTTTAACCATAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020924.1\|WP_001031682.1\|24891_25185_-\|TrbC/VirB2-family-protein	unknown	unknown	unknown
NZ_CP020924.1\|WP_000702249.1\|34787_35054_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020924.1\|WP_000612441.1\|28532_28871_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP020924.1\|WP_000844300.1\|27118_27760_+\|conjugal-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|369643
NZ_CP020924.1\|WP_053293934.1\|22138_24511_-\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|273346
NZ_CP020924.1\|WP_001056371.1\|27772_28006_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP020924.1\|WP_000432877.1\|31929_32253_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020924.1\|WP_000749828.1\|34512_34737_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271338
NZ_CP020924.1\|WP_000702249.1\|32888_33155_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020924.1\|WP_001000143.1\|24513_24834_-\|VirB3-family-type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|226225
NZ_CP020924.1\|WP_001450803.1\|33144_33387_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|292359
NZ_CP020924.1\|WP_001208090.1\|29244_30249_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP020924.1\|WP_000332248.1\|28046_28334_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_CP020924.1\|WP_001103652.1\|26121_27117_+\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|377390
NZ_CP020924.1\|WP_001450803.1\|35043_35286_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|292359
NZ_CP020924.1\|WP_000603936.1\|25177_25789_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP020924.1\|WP_000866040.1\|34192_34417_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020924.1\|WP_000866040.1\|32293_32518_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020924.1\|WP_000432877.1\|33829_34153_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020924.1\|WP_000749828.1\|32613_32838_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271338

Protein	Function_ID	Function_description	E-value
NZ_CP020924.1\|WP_001450803.1\|35043_35286_+\|hypothetical-protein	gnl\|CDD\|292359	pfam15731, MqsA_antitoxin, Antitoxin component of bacterial toxin-antitoxin system, MqsA. MqsA_antitoxin is a family of prokaryotic proteins that act as antidotes to the mRNA interferase MqsR. It has a zinc-binding at the very N-terminus indicating its DNA-binding capacity. MqsR is the gene most highly upregulated in E. Colo MqsR_toxin is a family of bacterial toxins that act as an mRNA interferase. MqsR is the gene most highly upregulated in E. coli persister cells and it plays an essential role in biofilm regulation and cell signalling. It forms part of a bacterial toxin-antitoxin TA system, and as expected for a TA system, the expression of the MqsR toxin leads to growth arrest, while co-expression with its antitoxin, MqsA, rescues the growth arrest phenotype. In addition, MqsR associates with MqsA to form a tight, non-toxic complex and both MqsA alone and the MqsR:MqsA2:MqsR complex bind and regulate the mqsR promoter. The structure of MqsR shows that is is a member of the RelE/YoeB family of bacterial RNases that are structurally and functionally characterized bacterial toxins.	3.14539e-05
NZ_CP020924.1\|WP_000612441.1\|28532_28871_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.01914e-13
NZ_CP020924.1\|WP_000844300.1\|27118_27760_+\|conjugal-transfer-protein-TrbJ	gnl\|CDD\|369643	pfam07996, T4SS, Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.	7.59878e-08
NZ_CP020924.1\|WP_053293934.1\|22138_24511_-\|conjugal-transfer-protein	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	5.99927e-128
NZ_CP020924.1\|WP_000749828.1\|34512_34737_+\|hypothetical-protein	gnl\|CDD\|271338	cd04702, ASRGL1_like, Metazoan L-Asparaginase type 2. ASRGL1 and similar proteins constitute a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1, and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.	0.00856211
NZ_CP020924.1\|WP_001000143.1\|24513_24834_-\|VirB3-family-type-IV-secretion-system-protein	gnl\|CDD\|226225	COG3702, VirB3, Type IV secretory pathway, VirB3 components [Intracellular trafficking and secretion].	7.63043e-06
NZ_CP020924.1\|WP_001450803.1\|33144_33387_+\|hypothetical-protein	gnl\|CDD\|292359	pfam15731, MqsA_antitoxin, Antitoxin component of bacterial toxin-antitoxin system, MqsA. MqsA_antitoxin is a family of prokaryotic proteins that act as antidotes to the mRNA interferase MqsR. It has a zinc-binding at the very N-terminus indicating its DNA-binding capacity. MqsR is the gene most highly upregulated in E. Colo MqsR_toxin is a family of bacterial toxins that act as an mRNA interferase. MqsR is the gene most highly upregulated in E. coli persister cells and it plays an essential role in biofilm regulation and cell signalling. It forms part of a bacterial toxin-antitoxin TA system, and as expected for a TA system, the expression of the MqsR toxin leads to growth arrest, while co-expression with its antitoxin, MqsA, rescues the growth arrest phenotype. In addition, MqsR associates with MqsA to form a tight, non-toxic complex and both MqsA alone and the MqsR:MqsA2:MqsR complex bind and regulate the mqsR promoter. The structure of MqsR shows that is is a member of the RelE/YoeB family of bacterial RNases that are structurally and functionally characterized bacterial toxins.	3.14539e-05
NZ_CP020924.1\|WP_001208090.1\|29244_30249_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	5.25919e-50
NZ_CP020924.1\|WP_000332248.1\|28046_28334_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	0.00176368
NZ_CP020924.1\|WP_001103652.1\|26121_27117_+\|type-IV-secretion-system-protein	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	2.20423e-25
NZ_CP020924.1\|WP_000603936.1\|25177_25789_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.62284e-61
NZ_CP020924.1\|WP_000749828.1\|32613_32838_+\|hypothetical-protein	gnl\|CDD\|271338	cd04702, ASRGL1_like, Metazoan L-Asparaginase type 2. ASRGL1 and similar proteins constitute a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1, and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.	0.00856211

>NZ_CP020924.1|WP_001208090.1|29244_30249_-|replication-initiation-protein
MALRNNKRNDCNDVQSLLTQGNQLLEGAYDITLIEMRLLYLALTKIDSRKPQPASEYTLFAKEYRDAFSLDSKNCYEQLKSAASSLGSKPIVTYEWNETKKRIDAVKRFWFSSIRYGVGNSESDITLRFSDSVSQYLYELKSEFTQMNLEHMVKLDTPFSFRLYSWLYKYKNLSRNKKESGVISTDPITIEWMKERTGLTGKYPVYKDFKKRVLDPAVDIINANTNLSVTYEGIKSGKRIESVVFTYLVENETTHGKKMAVKPLRPRMPSRPRVVKGSLAEATWARNCLNVMRGYLVALKEYDHTLKLSSSDVAKVVVWCEIIGEPFDEDFWKK
>NZ_CP020924.1|WP_000612441.1|28532_28871_+|helix-turn-helix-transcriptional-regulator
MIPKRLKEAREAANFSQEKLAQLVDIESVNSRSRISNYESGRFTPPFEFIQKVAKVLDYPEGYFYTSDDDFAELLLLIHRGHSYNELKRSIKVINEAKILVEKLQDCLNTNN
>NZ_CP020924.1|WP_000332248.1|28046_28334_-|helix-turn-helix-transcriptional-regulator
MAYYENMRYDLLNKIFPDLTPVQAQCVLMYSFGMSSLEISGCVGVSRQMIDKNLHAAAKKMNVNNLIALKPAVVIGILLEVLASLPVKDDLTNED
>NZ_CP020924.1|WP_001056371.1|27772_28006_+|EexN-family-lipoprotein
MNMKKTMLIPLTALIFILTGCNEKVYDVDYYVNNIKEAEQMQKKCESGEVANQNCENARNALKQINRKKTISSMFAH
>NZ_CP020924.1|WP_000844300.1|27118_27760_+|conjugal-transfer-protein-TrbJ
MKSVYSYILFILSLFITHNAIAAIPVVDPASIAKTVEEGVTRAKEAAANLQQLKEQYEQTIKYAEEQKRRLEGFTDFSNGFDSAESYMKTRLSDLTDHSKENVNSLRDKYNLKSESNLAQTRYDSILKQIDFYEKFNKSLLERANRMQNLQNSFSHANTPQQKADLANQLNTEKLTLEMQIKQYDIAERQLASQAAAEYEQNRQSTISAMFKH
>NZ_CP020924.1|WP_001103652.1|26121_27117_+|type-IV-secretion-system-protein
MNVVSEFITTINTVVQSGAASNAAKIAKAISPVFVAAVLLYIVYVAYEITYSQRDIILSEVTKLIASLSLVGAFTYTAPYYSQYVIPFVMHAGSDLSNALTGTGDVATSVDGLWEKLSTIMDNFISSKVQELSMTDIGGYIGAYAIWGIGYAGGAILILYTTIFLCISTFMVGLLLATGIIFICFSFFPTTRSMFTSWCGSCLNYILLNVFYTISFGFVVTLIEKNMVKDGNVTIMMVVTLLLVILISVFLIEQIGTLCSTLTGGVGINGLTSAANGAGGKLAGSLGRVTGTRAFMNGFKSNMSNPFFNAGQSLASKMQQSSTRGSKIIGG
>NZ_CP020924.1|WP_000603936.1|25177_25789_-|lytic-transglycosylase-domain-containing-protein
MILSTVALMMLFSQCAPTVSPVTLNAIVQTESSGNPYIVANISDGISKSFSNKGSAVAYLNALAKSGKHFSAGLMQIYSKNFKALGLDNENVFDPCKNIKAGAEILTKNYLAKKGGNEQENLLKSLSEYYSGNSTRGFKKEAQFNNTSYVERVMKNAYVVPELRVDKPENAKATKEQSVQEKGNQSFVSHSQDWDVFGDYSNE
>NZ_CP020924.1|WP_001031682.1|24891_25185_-|TrbC/VirB2-family-protein
MNKFANVNRFVFALFFMMFSGFAAAAGGLDSATNALTNVKTWLFTFVGIGALVYMLYCILMAFMERKSWGDVGMALGYCALAGGAVVGGTWALELFQ
>NZ_CP020924.1|WP_001000143.1|24513_24834_-|VirB3-family-type-IV-secretion-system-protein
MNDTEKPKVVFLSYNGLNRPVMVRGVPLMLFLSVGFLAVFGGFGCMFMWGISGLIFPALCFLFLFIVRIICENDPNALSVMNLQLKGYFLKVMHRDSIIGFSSVER
>NZ_CP020924.1|WP_053293934.1|22138_24511_-|conjugal-transfer-protein
MQVAQLKDSKNKNVASMYPEYMYHISDSVVYTLDRKMLATIAIQGIPFEFASDSFLENSFNGIKDYLVGVGKEGDVYLWTHFIKEKIYLDESYEFSSKFLNLFAEKYISLFKGDDFFKSTWYITFGVSYNDVDKGLERLEDIISQAMVVLKPFSAWLLKVDKNYVSETADYLSCLINKKHTIIPVSSTPLYESIADSDWYFGNDTLELRNNESDDKKFATNYVLKDFPMFTTPGQWDFLLKLPYEFIITQSFLFEAPAKTVRKIDSQLNKMGSTGDAAKSQQEELIAGKDFVTSGTNLFGSYHCVLTVFGDTAEAARKNGIKVSSEFITTGKGFRFSRATSAAPYVFFSHLPMNKTRPLSTRRTAANLACTFSLHNYSSGKKSGNPIGDGSALMPLKTVSDGLYYFNTHYSDPNKNVTGQRIAGHAMILGATGTGKTTFEGSAAGFLQRFDPYMFVIDYNRSTELFVRAYGGSYFALQEGVFTGLNPWQLAEDESSPIWKRLLAFLKSLAKAFVRDNMGNPCSDQQAIEMDAAVESLMTMPVQLRRTSALLQIVNDSELRIRLAKWCKNGAYSWATDSPENTFNPMDYKKVGFDTTVILEKVNGETHPACEPLLAILFFYKTLMQRDGKLMLTIVEEFWMPANFPLTQDMIKSALKAGRLKNEMMWLTSQSPEDAVNCAIFAALAQQTATKILLPNPDAEFDGYKKIGLVEKEFKKLKSLSKESRTMLIKQSGSSAFAKMDLYGFDDFLPVISGTTEGIVLCEQVREELGTDEPDIWIPEFIKRIKEQKK
>NZ_CP020924.1|WP_000432877.1|31929_32253_+|hypothetical-protein
MENYAKFVATEILNQLGGNRFIAMTGAKNFAYFDEDGECGLSFRLPSKFAMNGINLVKIKLTFSDTYQVTFSRVRGAMVKEVSTFDNVYCDQLECLFNEQTGLATRL
>NZ_CP020924.1|WP_000866040.1|32293_32518_+|hypothetical-protein
MKVLIGNINIRNHHMLLELAGIAGFAGSVEYTSEISASIDLMDDSFRSKVGISDSEILKMLEAFVENKFSIKLV
>NZ_CP020924.1|WP_000749828.1|32613_32838_+|hypothetical-protein
MKKSTFPVIVSTTGHAFSVARVTLCTICLKHEKTGKDYVVIFTDSNNIRDYKTGVVPCFGELYQEDVDLIVGKS
>NZ_CP020924.1|WP_000702249.1|32888_33155_+|hypothetical-protein
MKIRKGDRQYYLNKEGNMFHLVKRVKTFSKSATLGKTKATVITVADLIFHEDAFDTIDFTRGGLRENDKEVVSMMIQEMNNEREKNVN
>NZ_CP020924.1|WP_001450803.1|33144_33387_+|hypothetical-protein
MLTENTPENIKRLRQKIGLTQRECAEIFSMNPRTWRRKEEPAGTASGTALTPVEFKYLQLLAGEHPEYVLRKRDKPKCSE
>NZ_CP020924.1|WP_000432877.1|33829_34153_+|hypothetical-protein
MENYAKFVATEILNQLGGNRFIAMTGAKNFAYFDEDGECGLSFRLPSKFAMNGINLVKIKLTFSDTYQVTFSRVRGAMVKEVSTFDNVYCDQLECLFNEQTGLATRL
>NZ_CP020924.1|WP_000866040.1|34192_34417_+|hypothetical-protein
MKVLIGNINIRNHHMLLELAGIAGFAGSVEYTSEISASIDLMDDSFRSKVGISDSEILKMLEAFVENKFSIKLV
>NZ_CP020924.1|WP_000749828.1|34512_34737_+|hypothetical-protein
MKKSTFPVIVSTTGHAFSVARVTLCTICLKHEKTGKDYVVIFTDSNNIRDYKTGVVPCFGELYQEDVDLIVGKS
>NZ_CP020924.1|WP_000702249.1|34787_35054_+|hypothetical-protein
MKIRKGDRQYYLNKEGNMFHLVKRVKTFSKSATLGKTKATVITVADLIFHEDAFDTIDFTRGGLRENDKEVVSMMIQEMNNEREKNVN
>NZ_CP020924.1|WP_001450803.1|35043_35286_+|hypothetical-protein
MLTENTPENIKRLRQKIGLTQRECAEIFSMNPRTWRRKEEPAGTASGTALTPVEFKYLQLLAGEHPEYVLRKRDKPKCSE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_KY446064	Escherichia coli strain GD81 plasmid pGD81-1, complete sequence	44851-44897	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP042629	Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-2, complete sequence	12655-12701	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP041625	Escherichia coli O157:H7 strain ATCC 43888 plasmid p35K_like, complete sequence	17084-17130	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP028594	Escherichia coli strain 150 plasmid pTA150-2, complete sequence	26791-26837	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP020924	Salmonella enterica subsp. enterica strain 16A242 plasmid unnamed2, complete sequence	30600-30646	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP038409	Escherichia coli O157:H7 strain 86-24 plasmid p86-24-2, complete sequence	30529-30575	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP028605	Escherichia coli strain 144 plasmid pTA144-2, complete sequence	29239-29285	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP038307	Escherichia coli O157:H7 strain SS NE 1040-1 plasmid pNE1040-3, complete sequence	27468-27514	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP038311	Escherichia coli O157:H7 strain Show KS 470-1 plasmid pKS470-3, complete sequence	29260-29306	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP038367	Escherichia coli O157:H7 strain F6667 plasmid pF6667-2, complete sequence	23563-23609	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP038303	Escherichia coli O157:H7 strain SS TX 313-1 plasmid pTX313-2, complete sequence	28381-28427	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP038337	Escherichia coli O157:H7 strain LSU61 plasmid pLSU61-2, complete sequence	26050-26096	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_AP018807	Escherichia coli strain E2863 plasmid pE2863-5, complete sequence	30654-30700	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP007599	Salmonella enterica subsp. enterica serovar Enteritidis str. 77-1427 plasmid pCFSAN000111_01, complete sequence	35471-35517	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	26621-26667	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP022051	Escherichia coli O157 strain FDAARGOS_293 plasmid unnamed1, complete sequence	11580-11626	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP038317	Escherichia coli O157:H7 strain NE92 plasmid pNE92-2, complete sequence	29606-29652	1.0
NZ_CP020924_1	1.1\|30600\|47\|NZ_CP020924\|CRISPRCasFinder	30600-30646	47	NZ_CP015845	Escherichia coli O157:H7 strain FRIK2455 plasmid p35K, complete sequence	3106-3152	1.0

1. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_KY446064 (Escherichia coli strain GD81 plasmid pGD81-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

2. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP042629 (Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

3. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP041625 (Escherichia coli O157:H7 strain ATCC 43888 plasmid p35K_like, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

4. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP028594 (Escherichia coli strain 150 plasmid pTA150-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

5. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP020924 (Salmonella enterica subsp. enterica strain 16A242 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

6. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP038409 (Escherichia coli O157:H7 strain 86-24 plasmid p86-24-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

7. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP028605 (Escherichia coli strain 144 plasmid pTA144-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

8. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP038307 (Escherichia coli O157:H7 strain SS NE 1040-1 plasmid pNE1040-3, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

9. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP038311 (Escherichia coli O157:H7 strain Show KS 470-1 plasmid pKS470-3, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

10. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP038367 (Escherichia coli O157:H7 strain F6667 plasmid pF6667-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

11. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP038303 (Escherichia coli O157:H7 strain SS TX 313-1 plasmid pTX313-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

12. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP038337 (Escherichia coli O157:H7 strain LSU61 plasmid pLSU61-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

13. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_AP018807 (Escherichia coli strain E2863 plasmid pE2863-5, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

14. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP007599 (Salmonella enterica subsp. enterica serovar Enteritidis str. 77-1427 plasmid pCFSAN000111_01, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

15. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

16. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP022051 (Escherichia coli O157 strain FDAARGOS_293 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

17. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP038317 (Escherichia coli O157:H7 strain NE92 plasmid pNE92-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

18. spacer 1.1|30600|47|NZ_CP020924|CRISPRCasFinder matches to NZ_CP015845 (Escherichia coli O157:H7 strain FRIK2455 plasmid p35K, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	CRISPR spacer
ctgtccctctttgaccataaatttgtccccagataaaaacgccaaga	Protospacer
***********************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP020923

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

63699 : 72995

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085341514.1\|63699_64380_-	DNA methylase	A0A2I7RE86	Vibrio_phage	2.8e-28	36.4
WP_000369839.1\|64761_65118_-	hypothetical protein	NA	NA	NA	NA
WP_000490265.1\|65110_65581_-	hypothetical protein	NA	NA	NA	NA
WP_000925627.1\|66091_66514_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
WP_000457541.1\|66513_67788_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.0e-156	64.5
WP_071953349.1\|67869_68844_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	2.0e-83	52.9
WP_000427676.1\|68843_70049_-	AAA family ATPase	A0A077SL49	Escherichia_phage	1.5e-162	69.3
WP_000728917.1\|70463_71405_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
WP_001541562.1\|71436_72003_-	DUF2913 family protein	NA	NA	NA	NA
WP_001527010.1\|72059_72395_-	hypothetical protein	NA	NA	NA	NA
WP_001541564.1\|72578_72995_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020922

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP020924

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP020923

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection