CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP021479	Lactobacillus brevis strain SRCM101174 chromosome, complete genome	2 crisprs	cas3,csa3,DEDDh,DinG	5	7
NZ_CP021478	Lactobacillus brevis strain SRCM101174 plasmid pLB1174-1, complete sequence	0 crisprs	NA	0	0
NZ_CP021483	Lactobacillus brevis strain SRCM101174 plasmid pLB1174-5	0 crisprs	NA	0	0
NZ_CP021482	Lactobacillus brevis strain SRCM101174 plasmid pLB1174-4	0 crisprs	NA	0	0
NZ_CP021480	Lactobacillus brevis strain SRCM101174 plasmid pLB1174-2, complete sequence	0 crisprs	NA	0	0
NZ_CP021481	Lactobacillus brevis strain SRCM101174 plasmid pLB1174-3	0 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021479_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021479_1

801862-801993

Orphan

Consensus_repeat	Method
CTGGCTAAGTTAAACTTAGGTAGTATATCTGCGCAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021479_1

>merge|NZ_CP021479|1|801862-801993|CRISPRCasFinder
CTGGCTAAGTTAAACTTAGGTAGTATATCTGCGCAATGATGTCCCGGATTTTCGGGAGATCTAGTAGAGCGGAATTTTCCGCTGAATAAACCAGACTGGCTAAGTTAAACTTAGGTAGTATATCTGCGCAAT

>NZ_CP021479|1|1|801862-801993|CRISPRCasFinder
CTGGCTAAGTTAAACTTAGGTAGTATATCTGCGCAAT	GATGTCCCGGATTTTCGGGAGATCTAGTAGAGCGGAATTTTCCGCTGAATAAACCAGA
CTGGCTAAGTTAAACTTAGGTAGTATATCTGCGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021479.1\|WP_082265205.1\|797520_797748_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021479.1\|WP_087612722.1\|798559_799954_+\|virulence-protein	unknown	unknown	gnl\|CDD\|227832
NZ_CP021479.1\|WP_082265212.1\|802567_803041_+\|phage-terminase-small-subunit-P27-family	unknown	unknown	gnl\|CDD\|377461
NZ_CP021479.1\|WP_082265213.1\|803037_804735_+\|terminase-large-subunit	unknown	unknown	gnl\|CDD\|226974
NZ_CP021479.1\|WP_082265203.1\|795095_796253_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP021479.1\|WP_082265211.1\|801347_801758_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP021479.1\|WP_011667983.1\|810548_811652_-\|anion-permease	unknown	unknown	gnl\|CDD\|238537
NZ_CP021479.1\|WP_082265215.1\|804888_805989_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|273677
NZ_CP021479.1\|WP_082265206.1\|797759_798560_+\|bifunctional-DNA-primase/polymerase	unknown	unknown	gnl\|CDD\|240129
NZ_CP021479.1\|WP_082265210.1\|800789_801134_+\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|273692
NZ_CP021479.1\|WP_157662337.1\|805985_807512_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_CP021479.1\|WP_082265214.1\|804694_804892_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021479.1\|WP_082265209.1\|800611_800803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021479.1\|WP_011667984.1\|809444_810410_+\|VIP2-family-actin-ADP-ribosylating-toxin	unknown	unknown	gnl\|CDD\|367527
NZ_CP021479.1\|WP_082265208.1\|800116_800596_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021479.1\|WP_082265217.1\|807610_807880_+\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
NZ_CP021479.1\|WP_063489188.1\|797083_797263_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP021479.1\|WP_042522391.1\|808543_808744_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP021479.1\|WP_082265218.1\|808053_808425_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021479.1\|WP_082265204.1\|796310_796928_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188

Protein	Function_ID	Function_description	E-value
NZ_CP021479.1\|WP_087612722.1\|798559_799954_+\|virulence-protein	gnl\|CDD\|227832	COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only].	4.82768e-66
NZ_CP021479.1\|WP_082265212.1\|802567_803041_+\|phage-terminase-small-subunit-P27-family	gnl\|CDD\|377461	pfam05119, Terminase_4, Phage terminase, small subunit.	3.43473e-27
NZ_CP021479.1\|WP_082265203.1\|795095_796253_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.34982e-41
NZ_CP021479.1\|WP_082265211.1\|801347_801758_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	7.40738e-05
NZ_CP021479.1\|WP_082265215.1\|804888_805989_+\|phage-portal-protein	gnl\|CDD\|273677	TIGR01537, portal_protein, phage portal protein, HK97 family. This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa. [Mobile and extrachromosomal element functions, Prophage functions].	8.44009e-66
NZ_CP021479.1\|WP_082265206.1\|797759_798560_+\|bifunctional-DNA-primase/polymerase	gnl\|CDD\|240129	cd04859, Prim_Pol, Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol). These primpol domains belong to the archaeal/eukaryal primase (AEP) superfamily. This group includes archaeal plasmids and bacteriophage AEPs. The ORF904 protein is a multifunctional protein having ATPase, primase and DNA polymerase activity, and may play a role in the replication of the archaeal plasmid. The pRN1 primpol domain exhibits DNA polymerase and primase activities; a cluster of active site residues (three acidic residues, and a histidine) is required for both these activities. For pRN1 primpol, the primase activity prefers dNTPs to rNTPs; incorporation of dNTPs requires rNTP as cofactor. The pRN1 primpol contains an unusual zinc-binding stem, which is not conserved in other members of this group.	8.63715e-36
NZ_CP021479.1\|WP_082265210.1\|800789_801134_+\|phage-head-closure-protein	gnl\|CDD\|273692	TIGR01563, hypothetical_protein_AGR_C_1752, phage head-tail adaptor, putative, SPP1 family. This family describes a small protein of about 100 amino acids found in bacteriophage and in bacterial prophage regions. Examples include gp9 of phage HK022 and gp16 of phage SPP1. This minor structural protein is suggested to be a head-tail adaptor protein (although the source of this annotation was not traced during construction of this model). [Mobile and extrachromosomal element functions, Prophage functions].	3.15077e-07
NZ_CP021479.1\|WP_157662337.1\|805985_807512_+\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	1.92355e-56
NZ_CP021479.1\|WP_011667983.1\|810548_811652_-\|anion-permease	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	6.33006e-44
NZ_CP021479.1\|WP_082265204.1\|796310_796928_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	8.98961e-06
NZ_CP021479.1\|WP_011667984.1\|809444_810410_+\|VIP2-family-actin-ADP-ribosylating-toxin	gnl\|CDD\|367527	pfam03496, ADPrib_exo_Tox, ADP-ribosyltransferase exoenzyme. This is a family of bacterial and viral bi-glutamic acid ADP-ribosyltransferases, where, in Aeromonas salmonicida AexT, E403 is the catalytic residue and E401 contributes to the transfer of ADP-ribose to the target protein. In clostridial species it is actin that is being ADP-ribosylated; this result is lethal and dermonecrotic in infected mammals.	6.20993e-25
NZ_CP021479.1\|WP_082265213.1\|803037_804735_+\|terminase-large-subunit	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	4.13662e-106
NZ_CP021479.1\|WP_082265217.1\|807610_807880_+\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	4.96698e-16
NZ_CP021479.1\|WP_063489188.1\|797083_797263_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.45609e-07
NZ_CP021479.1\|WP_042522391.1\|808543_808744_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.60628e-34

>NZ_CP021479.1|WP_082265211.1|801347_801758_+|HNH-endonuclease
MAKPMKQCNHAGCRQLVPYNVRYCDKHQHKANAETYHKRMYGEHEGRYQQFYKSSQWRKLSRRFLENNPICVQCYQDGVIRKADVVDHIVELRDDWARRLDESNLQPLCYRHHNQKTKQARETRLKEASAKNGGKA
>NZ_CP021479.1|WP_082265210.1|800789_801134_+|phage-head-closure-protein
MKTYDVSRMKHRCQFGVYGDSDEINPNTGVPIQQFVPQFSLWFGEYSQTINQQITLTGDNLTDTKMIVVRHNEQVNQQQLVKIGDTLYRVSNVAGDDEVNSFDVITLVRYQKHG
>NZ_CP021479.1|WP_082265209.1|800611_800803_+|hypothetical-protein
MKIKMVHADNMEELFAQVSEVDKAQDIDDELIGTSIDFIKVSDSKMIYCEALVYRTGDDDEDL
>NZ_CP021479.1|WP_082265208.1|800116_800596_+|hypothetical-protein
MKWQEMQLLRNSKYSSSENLKKFEDVFKFDKCAVYERPHSLEKLLAGERSYNAGNKYDTPPYLGDWLDHAELQKVSGTTRIVAIAHDYGSADSVHSKIAEHVLSLDLVGVIFDSKVDWYYPGQSSLVMIMSKETYNYYYYDLLANHHVVDVVKKQYFRE
>NZ_CP021479.1|WP_087612722.1|798559_799954_+|virulence-protein
MGKAMDLPAETRETANNVVKMQRSADWQNDFKKNSDDGIKTQSLYNIRLIMEHDEMLKGLVVFDEFSEQIVKTPQAENSPFKKGFWNDSDDTLLRSYIEDHYNLLFSKENITDAVVTEARRKTINPVKARIEAAEWDGQPRAERYFIDYLGAEDNHYTRTITKKWLTGLIARAYVPGVKFEIVPILEGSQGLGKSTAGKNLYPDKFNDSLKGMGKQKDDYQQLQGSWIIEVAELSAMKKTDIEGIKNFISAQSDTYRNSYGRYASPHPRKCVFIGTTNQTDYLKDVTGERRFYPIKCGVNKAKLDVWHPDENYMLQVLAEAAYWFRNGEPLYLDQATIKEAKAYQMAAEAVDPMRDAIEEFLAMEIPADWENMSTGLKQSYVSDYGHHSKWLQDQVSNERKLLNQTTTREIMEVVFHKTVDRYLTGRTNSEAKRIKLLMDNMDGWKSQRIRTNGKQPHGYVREL
>NZ_CP021479.1|WP_082265206.1|797759_798560_+|bifunctional-DNA-primase/polymerase
MEEFSSLYAALDLVESGYEIYPLSANTKTPPKGHHGYLEATRDQNTIVDWFQNNPDYNLGLRLDTSNLLVVDVDIHDSAKNGKDSLMKLQRQGKTLSPDTYIEKTAGGGLHYFFKYTGDKVRKVDNWPGIDLLTDFTVIAPSEIGGMAYAPLSGRTLADIKPAPNWLVDELSTNGLNGAPEHAYTTRLKKYTGRLLDEMVQGANTGDRNVWLTKMAGRMFSVGAGPKTVYNMLSVINDSFVDPSLSSKEVNVIFQSILKRESKGVH
>NZ_CP021479.1|WP_082265205.1|797520_797748_+|hypothetical-protein
MTNEELFEQAEELTRAWESLKVSIDDLSMTNAIVKHDSYWCNYFFNSHQSSNLESNLANIADIMLKVSNAICPEE
>NZ_CP021479.1|WP_063489188.1|797083_797263_+|helix-turn-helix-domain-containing-protein
MNNEKNQWLTYHQVMEELNIGSMNTVYKMIKDGLKVTSIGRLKRIERKELDKYLASKTI
>NZ_CP021479.1|WP_082265204.1|796310_796928_-|helix-turn-helix-transcriptional-regulator
MNPIRSRMLELHMSFTDLQNDTQLSKATIARLIKNDEIPDSTRLSTLKLIANSIECPVSTLLAPAVTNYSIFPPTSEKKKVRNEIGSIVFSYIVPINFDQITNSTFKIDFFQNIKNQNLKKIIISVEKDPNLAIGGLILGNQQQTLKSILNELIINCHYEMSSFDKNNVIFCDFNAFINSEFSTQGTFSFNYSNTSESHFLHIYF
>NZ_CP021479.1|WP_082265203.1|795095_796253_-|site-specific-integrase
MATIKKYQDKDGNTRYQFQIYLGTDPLTGKKKTTRRRGFKTKKEAQIVLSRLELDVYNHGLPTKNDNSIFSDIYQLWFTQYQHTVKESTWATTKRMFRLHILPVFGEYRIAQITIKDCQKAINQWFNEGLAKYHTLMNYVAKVLDYAINIDLISENPAKRVIVPVNKNDRSRKNLENYFDKSELQHFFECLNDDDNTPQASVFFRLAAFSGMRKSEMLCLEWSDIDFIHHTISVNKTQSRGDMARLLVQTPKTARSNRTVFIDPKTVQILQRWQLDQKKYLIRFGFNVNHSNNYIFANENNEMFQPSKPRKWLEHTLTKYDLKHVTVHAFRHTYATLAFEAGASVKSVQDQLGHSSYRTTLDIYTAVTAKQKNEATQKLASYLNF
>NZ_CP021479.1|WP_082265212.1|802567_803041_+|phage-terminase-small-subunit-P27-family
MGQKIKQLSTLKKHLTNEERDQRKDAETALFDYPSLDLTPPDWLHDRALTEWQRVSPYLKANTPISELDRALLASYCRAYATIQTCENDIRKNGLVQTNQETGSRKPNPYVALQSQAMKDLKSLANDLGMSLSSRARMELNKQKDDAPEDSFEAMLS
>NZ_CP021479.1|WP_082265213.1|803037_804735_+|terminase-large-subunit
MIEYVDQVLSGKVLAGQKIKWACERFKRDLSRSKEASFPFYYDEEAAAKAVKFIELMPKTDGSQLTMQPFQEWIISELYGWREKATGNRRYDRAFISMARKNGKTYLASGMAANGLLRERQPARNRQVLFVSNALKQAKLGYDMLSSGLRQVRKQSKYMRQRIKVQKQAITDLETDSQALALASDTSTLDGYAGTTVILDEWHEAKDRKVYNVLKSGQAQEDNSLLAVISTSGLNLNVPMHAEYEMLTDVLKGKIEADRYFVAIWELDDREEVYDQANWIKANPLFSEPHVKQRMTEKIQADVDLAIKQNNLIPVLVKNFNMWLQASEDSYISADDWAAGKLNKIPNLRGRDVYIGIDLSKSNDLTAVSWLVPIGNGQFYCDSHAFVGTKYGLDSKIKRDGIDYRSMERAGECSITRLDSGIIDYDALFDYVQQLVGQYNWKVKAVAYDPYNAQTLITKFEKLNYPLFEVRQGTLTLNIPTRNFRDQLYAGHIKHNGNQILAYAVNNAILKVLNNGWQLDKARNSNRIDPIAALINAYVAGMDYYQESEANQHANEYYATATDLF
>NZ_CP021479.1|WP_082265214.1|804694_804892_+|hypothetical-protein
MRTNIMRLRRICSNYLSAILLIMGLILLVVGVGGWLGWYAAIMLAGVSLIVLALLINYEEKEVNP
>NZ_CP021479.1|WP_082265215.1|804888_805989_+|phage-portal-protein
MSIFVKASTTSGTHDPVADALVSLSSNDPYTFVSAAVLRNSDIYAAINIIASDIASNPIVCDTAIFNTMINQNPNSNMDGYHFKYALAANLLLNGNSFAEILPNHTLKLIPNNQLVVEQDDVSGKLTYTYTPTSGTCRQIAPDNILHFKYFTKDGVSGISPLYALKDERQIQSAGNKLLTGFFTAGVHGTTIVKLHQTDLGKEAKENVRKQFDETTTGENAVNTIVTDDGMDISNLPLNTDVLKLVNSNDWTTRQIAKAFGLPPERLGVENDHSNQEQSGVQYLQGTLQHYFDSFTSELSFKLGHDFMFNTDKLLSLDPQTQQAQAVAGFTGGIMSRNEARAKIGLPPTDDGDIFLNLQKNGVNNS
>NZ_CP021479.1|WP_157662337.1|805985_807512_+|phage-major-capsid-protein
MKQDRRLTIDAELRAQTPQPETPEDGDSTTPQTQDSQANKGKTISGYAIVWNSPSKDLGGFTEIVTPKALDGVDLSNVLMLNNHDYTQVLASVKAGTLTLETDDKGLHFIAQLPNTSFANDVYEEVQSGNVDSCSFGFDSDDDTDGWTKDDDGNITRTINQVKSLFDVSVVAVPAYDDTNVQVDTRSYEKFINQEKEPDDMAKQTIIDPNTNEDDNKTGVPAFEAYVRSHGETRDGLNTSGASAVIPKELITPVFQLKQSTYNLAQYATVKQVSSGSGTYPISTSRQSAVLATKEELADIADVNANMFTEVPFDVKTRAGKIALSNEVVEDAEVDIVSEVKAQLQQLVDNTDNTQIMGLLTGSSFAKATATSIDDLKKIFNVTLDPALSKMWLVNQSGFNYLDTLKDSEGRYLLQPNPTAPSGFTLLGAPVVMISDKLLANNADGTFPMIAGDLSQAVAVFRRNQVTAQWDKFDQFSQGLSVIVRNDYEVIDKTAAVNVSLGTATSGK
>NZ_CP021479.1|WP_082265217.1|807610_807880_+|phage-gp6-like-head-tail-connector-protein
MAVTVDDIKTSLRLDLTEDDALIQGYLDAAKEYVQTAVSTTAALAQYKQYDFAVSLLTQFWYQNRVVDMKQTPYQVVSMIQQLRGLTSE
>NZ_CP021479.1|WP_082265218.1|808053_808425_+|hypothetical-protein
MRQDIKKIRNLLKEYAKLKQEIRTFNQVSSPVLSVAPSHSGGNGVENSLINYVDLSYQLKEVDDALNAIHNPQYQFILHDYIIEKRFTRSEACKRLSVSTSKFNYMKNCALELFRVAYSELKC
>NZ_CP021479.1|WP_042522391.1|808543_808744_+|cold-shock-protein
MQNGTVKWFNADKGFGFITGSDDKDVFVHFSAIQTDGFKSLDDGQKVSYDVEQGDRGPQATNVVPQ
>NZ_CP021479.1|WP_011667984.1|809444_810410_+|VIP2-family-actin-ADP-ribosylating-toxin
MLRKLGLSLIVIGGVLTIGTKNVNAASFASGDSIVSMTTRNNYIHDSKYRYLVTKKNAIAYKAIGKAPDYTASVSISKNVPLTVRQTVEGGHIVTEPQSTDKLFLSNDKQFVYSSDVKSLSKKQIKVLAKDSKKWSSKIGKKSVQAVGYYTGDGYEKINGYLRNGKGQKKVVKKAQLVQKGISKFKLRYNTTVYRGISNKGLKLSLNNRGLSVGSIYQDKAFSSTSLSKQVALGFSSQCLLRINIPAGSHGAYIDPISKNKGEKEYLLKEGQKLIVTKIQNVSYTEATKMYLIKNKGSKVVQHTTNNVKGNYKLITLNLLN
>NZ_CP021479.1|WP_011667983.1|810548_811652_-|anion-permease
MKAVTTRILHDKVLWIAAVAAGLSLFVGRPQIHDINWTTIWSLLALMVCVQLLNSYHVLDQLSQQLLTHSHNQRQIVQYTVLLAFVGAMFLTNDVAILTLFPMYIRLAHQQHLPIAFPTTLIVLAANLGSAFTPFGNPQNLFLVAHYHIDGLAFLKLSTPLMLIGLFSLAGLTYGIAPRSTKAAPTRLFPQHPGKIALTILLFGLTLLGIFQIFPLGWITVIVIISGWLLNRAAIKQVDYGLLLTFICFFILVSSFSHNATLTTLIAHVTHTPVASYLTGLTISQVISNVPATVLLANFTNHLTALYWGVNLGGLGTLVASLANLLALKQLLFLTNRPTVREFFKVFTLVNLGLLVVLGTIGYYWIR

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Crispr_ID: NZ_CP021479_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021479_2

2368729-2368941

Orphan

I-E,II-B

Consensus_repeat	Method
GGGATCACCCCCACACCTGTGGGGAATAC	CRT
GGATCACCCCCACACCTGTGGGGAATAC	CRISPRCasFinder
GGGATCACCCCCACACCTGTGGGGAATACA	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP021479_2

>merge|NZ_CP021479|2|2368729-2368941|CRT,CRISPRCasFinder,PILER-CR
GGAAATGCCCCCACACCTGTGGGGTATACGCTTAAAATCAAGCAGTCGTTGGGCTACGTCAAGGATCACCCCCACACCTGTGGGGAATACTCATGTCCCATACTCCGGGCAAAGGAGTGCTTGGGATCACCCCCACACCTGTGGGGAATACAATAATGCGGGGGTATTCGCCTTCTTACTAGTGGGATCACCCCCACACCTGTGGGGAATACA

>NZ_CP021479|2|1|2368729-2368940|CRT
GGAAATGCCCCCACACCTGTGGGGTATAC	GCTTAAAATCAAGCAGTCGTTGGGCTACGTCA
AGGATCACCCCCACACCTGTGGGGAATAC	TCATGTCCCATACTCCGGGCAAAGGAGTGCTT
GGGATCACCCCCACACCTGTGGGGAATAC	AATAATGCGGGGGTATTCGCCTTCTTACTAGT
GGGATCACCCCCACACCTGTGGGGAATAC

>NZ_CP021479|2|2|2368730-2368940|CRISPRCasFinder
GAAATGCCCCCACACCTGTGGGGTATAC	GCTTAAAATCAAGCAGTCGTTGGGCTACGTCAA
GGATCACCCCCACACCTGTGGGGAATAC	TCATGTCCCATACTCCGGGCAAAGGAGTGCTTG
GGATCACCCCCACACCTGTGGGGAATAC	AATAATGCGGGGGTATTCGCCTTCTTACTAGTG
GGATCACCCCCACACCTGTGGGGAATAC

>NZ_CP021479|2|1|2368791-2368941|PILER-CR
GGATCACCCCCACACCTGTGGGGAATACTC	ATGTCCCATACTCCGGGCAAAGGAGTGCTTG
GGATCACCCCCACACCTGTGGGGAATACAA	TAATGCGGGGGTATTCGCCTTCTTACTAGTG
GGATCACCCCCACACCTGTGGGGAATACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021479.1\|WP_011668945.1\|2376032_2376554_+\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
NZ_CP021479.1\|WP_087612995.1\|2365994_2366978_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
NZ_CP021479.1\|WP_087612994.1\|2362420_2363563_+\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|181490
NZ_CP021479.1\|WP_087612996.1\|2372655_2375772_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP021479.1\|WP_011668942.1\|2370705_2371482_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP021479.1\|WP_107696508.1\|2378313_2379021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021479.1\|WP_041815768.1\|2369755_2370691_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|130256
NZ_CP021479.1\|WP_011668940.1\|2369079_2369610_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP021479.1\|WP_011668936.1\|2364810_2365176_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021479.1\|WP_011668939.1\|2367258_2368569_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP021479.1\|WP_011668935.1\|2363665_2364679_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200578
NZ_CP021479.1\|WP_087612992.1\|2352575_2353337_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP021479.1\|WP_011668933.1\|2358520_2362126_-\|ATP-dependent-helicase/deoxyribonuclease-subunit-B	unknown	unknown	gnl\|CDD\|213736
NZ_CP021479.1\|WP_087612993.1\|2354748_2358537_-\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP021479.1\|WP_011666857.1\|2377231_2378155_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP021479.1\|WP_011668937.1\|2365252_2365852_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|379199
NZ_CP021479.1\|WP_143453526.1\|2376921_2377140_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021479.1\|WP_011668949.1\|2379334_2381155_-\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP021479.1\|WP_011668943.1\|2371639_2372554_-\|prenyltransferase	unknown	unknown	gnl\|CDD\|260125
NZ_CP021479.1\|WP_011668834.1\|2353751_2354657_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP021479.1\|WP_011668945.1\|2376032_2376554_+\|QueT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	2.03886e-36
NZ_CP021479.1\|WP_087612995.1\|2365994_2366978_+\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	1.77043e-166
NZ_CP021479.1\|WP_087612994.1\|2362420_2363563_+\|ArgE/DapE-family-deacylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP021479.1\|WP_087612996.1\|2372655_2375772_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	4.39196e-73
NZ_CP021479.1\|WP_011668942.1\|2370705_2371482_+\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	1.49732e-17
NZ_CP021479.1\|WP_041815768.1\|2369755_2370691_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	6.47864e-106
NZ_CP021479.1\|WP_011668940.1\|2369079_2369610_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.64201e-15
NZ_CP021479.1\|WP_011668939.1\|2367258_2368569_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	4.97728e-143
NZ_CP021479.1\|WP_011668935.1\|2363665_2364679_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200578	cd10954, CE4_CtAXE_like, Catalytic NodB homology domain of Clostridium thermocellum acetylxylan esterase and its bacterial homologs. This family is represented by Clostridium thermocellum acetylxylan esterase (CtAXE, EC 3.1.1.72), a member of the carbohydrate esterase 4 (CE4) superfamily. CtAXE deacetylates O-acetylated xylan, a key component of plant cell walls. It shows no detectable activity on generic esterase substrates including para-nitrophenyl acetate. It is specific for sugar-based substrates and will precipitate acetylxylan, as a consequence of deacetylation. CtAXE is a monomeric protein containing a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold as other CE4 esterases. However, due to differences in the topography of the substrate-binding groove, the chemistry of the active center, and metal ion coordination, CtAXE has different metal ion preference and lacks activity on N-acetyl substrates. It is significantly activated by Co2+. Moreover, CtAXE displays distinctly different ligand coordination to the metal ion, utilizing an aspartate, a histidine, and four water molecules, as opposed to the conserved His-His-Asp zinc-binding triad of other CE4 esterases.	1.66375e-79
NZ_CP021479.1\|WP_087612992.1\|2352575_2353337_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	6.02816e-20
NZ_CP021479.1\|WP_011668933.1\|2358520_2362126_-\|ATP-dependent-helicase/deoxyribonuclease-subunit-B	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP021479.1\|WP_087612993.1\|2354748_2358537_-\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP021479.1\|WP_011666857.1\|2377231_2378155_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.8117e-73
NZ_CP021479.1\|WP_011668937.1\|2365252_2365852_-\|SDR-family-oxidoreductase	gnl\|CDD\|379199	pfam13460, NAD_binding_10, NAD(P)H-binding.	8.82255e-28
NZ_CP021479.1\|WP_011668949.1\|2379334_2381155_-\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	9.83052e-111
NZ_CP021479.1\|WP_011668943.1\|2371639_2372554_-\|prenyltransferase	gnl\|CDD\|260125	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase. Human UBIAD1 is an enzyme involved in the synthesis of MK-4. Menaquinones (MKs, also called bacterial forms) are one of the two forms of natural vitamin K, the other being the plant form, phylloquinone (PK). All forms of vitamin K have a 2-methyl-1,4-naphthoquinone (menadione; K3) ring structure in common. At the 3-position of the ring, PK has a phytyl side chain while MKs have several repeating prenyl units. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.	1.05209e-57

>NZ_CP021479.1|WP_011668939.1|2367258_2368569_+|NCS2-family-permease
MQRIANFFHFEELGTNYKTEILAGLTTFVSMAYILFVNPQVLGASGISQGAVFTATAFASAFGCMLMGILANYPIAISASLGINAFFAYSVVIGMKVPWQTALAGVFVASILFMILTAFKLREKVVDAIPRDLKMAISAGIGLFIAFIGLSQGGLVAADKSTIVSLGSLQVGSTWLTIFGLLVTVLLMSARVPGAIFIGMVANSILGLVTGLIPMPSHIVAAVPSISSTFMVGLTHVGSINSLQMIVVVLTFLLVTFFDTTGTLVGLAEQAGLVKNNKLPRIGKALMADSSTMVVGSLLGTSPMGAFVESSAGIAVGGRTGFTAIVTGILFIFGAFFSPLLAVVTDQVTAPALIIVGVLMAQSLKNIHWEKFEVAAPAFLIVLGMPLTYSISDGIALGFITYPLTMLAAKRGKEVGAMMYGLAVVFVLFLWILNAA
>NZ_CP021479.1|WP_087612995.1|2365994_2366978_+|aldo/keto-reductase
MTHELVTLGKTDVRTTPLGLGTNAVGGYNLFPNLKDNDGLNLVKAGLNHGIQLLDTAFVYGLGHSEELVGQAMHDFDRHSFTLATKGAQDFSSGEQVINNDPAFLTAQVDASLKRLNTDYLDIYYIHFPDKQTPKAEAVGALQRLREQGKIRAIGLSNFSLVQVKEANADGYVDVVEDEFSLLHRDHETDLMPYLADHQISFVPYFPLASGLLTGKYDQSVQFPADDIRSQISDFQEPRYSQALTAIDQVRPIAQAHQATVAQTILAWYMQNPLVSVVIPGAKRAAQVEANAQALEVTLTAAEYQTIDTAFAGFKATANGKSLADPD
>NZ_CP021479.1|WP_011668937.1|2365252_2365852_-|SDR-family-oxidoreductase
MTTYLIIGANRVGQLVARQLATESATVRLLHDGKETLPSDLATQVTELTGDLTQEATYTAALQDQPIIFSALTGMDVDLAFEALFDAQYHQRLTFQRFVMLSTAGVDQEVTGDLAYPGITDVAEYLKQQRYAAKLVDEAEFPYTILRPVTLADSPRRDPQIIKEGAAVPAGTVSRETVAQVAVSLLQAGGADYQSLAIC
>NZ_CP021479.1|WP_011668936.1|2364810_2365176_-|hypothetical-protein
MALQIDEQQLQAIRERMDEANQRAHFVIFQSVERESGKVLRLITDIDSFRAIQEQHQDDSDMVIIQDIVPITDTLARWAVAENMAAQQGDNAEVLADLERYTNEVLKENHQTVNPPESTDD
>NZ_CP021479.1|WP_011668935.1|2363665_2364679_-|polysaccharide-deacetylase-family-protein
MVKIGKVLGVLVATVALGVGSVPVTGQAKSTNKTVTFGQLTNKNTHRLAAIRQAARQEILTTTKAKSSRVAAVYQVKLPTHMTKTATLTKSGLRMNLLKNSFKVKQITIPYAQLKGKVLNRYLPKANRTSTIKTSKLVALTFDDGPDPTLTSRLLKTLKKYHAHATFFEVGQSVSRYPKISRAVLAGGNEIGNHSWNHPNFNSIGTAQTVSQVTRTNRAIYQATGTLPQYVRPPYGNITAAEGRAIEQPIIRWSVDSRDWAYLNSSKDINEVMHDTHGGDIILMHDIHAQSVAAAPTIIKRLQAKGYKLVTVSQLLNSQALPGLQYFGAHDYRTVGK
>NZ_CP021479.1|WP_087612994.1|2362420_2363563_+|ArgE/DapE-family-deacylase
MEDSEQIQILQHLISINSVNDHEADVAAYIQQLFADHGITSQVIPYADGRANIIAEIGDTTSDQVFALAGHLDTVATGDVADWKFDPFSAHIVDNQLYGRGAADMKSGLAAMVITLINLADQQTPLTGRLRFIGTVGEENGAMGSRMLTEKGVADDLTAMVIGEPTGGNLVYAHNGSLNYHVYSRGVGAHSSMPEKGINAITNLIKYVTAEATAFDDAPISPELGPLVHSVTVFNGGEQVNSIPAKAELQGNIRPIPEFDNTAVIHRLHETVDRLNQEPGVDLALHVDYSFKPIISAKDSPLVQTTKAIADQEFGHAIDLQVIHGATDASEFTKSSHDFPVIVYGAGKWDAAHALNESVDLDEFRHVQHVYQQLVEKFLS
>NZ_CP021479.1|WP_011668933.1|2358520_2362126_-|ATP-dependent-helicase/deoxyribonuclease-subunit-B
MSLQFILGSAGQDHRTPMVTALAQQVTAHPTDQSYYLVPNHIKFETEVDVLSALKEQIAPEQALFAQTQVQVFSFTRLAWFFMKNEPIYQLPRISPAGLNMLIYQIIQTHADELTIFRGEVDRPGFVSQLATQLAEFKVGQVTAADLMSAIEQLDTTNTDLQAKLHDLMIIYEAFETQMMGKFVENTDLLNQLATYLEQQVDLQHAHFYLEGFSQLSAQERQLVAILIQRSASVTVALNLDHGYPQKLPDKTTLFFQSAKLYQQLYMVAQANRVPVLIDQQAKTARVSADLQALDTYWQASQTLSPQPSAVEKPTHIQIVQAANRYVEVSRVATQIRQLVATGNYRYRDFLVLTRHLDAYQTVIDPIFQAQAVPYFDDADIRMADHPFVELLNALFDVQRRNYRYADVFRVLKSELLLPRDADGELMAVPAYRQALALTENFVLKNGLEGQHWWTQDKDWVYNRFAVGDGGVQTTRDDQISAQINRIRRFVKQTLPPFFARLKVAATYTDAAAVLYQFVANAGVSERLMTWRDQAIAAGDLTKAGQPEQTWAAFCDILDEFHTILGDLPTVLPDFQALLQAGFAGAKFSQIPSTLDQVVISESGIVQANNRKITFIMGATADTMPDNQIPTTLLADNDRQDLSARLQQVDDGTYLRDDAATQLAGEPYLNYLAFMSGSERLIFSYPAMSDDARSGLQLSPYVARIKDYFGLSIDIAAANPVAEDEAILPFVGTRRTTLRHLVQASHDSQLREVPLSRSWLYVLNLLRTDPTYGELTTKLLGSLSYRNVPTQLTPDIVTQLYGTKINTSISKLEEYYANPYAYFLKYGLNLQERDVFALSPASTGEFFHATLDGLMKLVNDQKLNLAALDDQQLREMTDEVMAKLLDTTENPQFAILESSHRMGYIRQQLMKTMRQMAKTLQEQSKRTKLRPKRTEVQFGLGDERGLAALSFDVGKRRQVTVRGRIDRLDAVQVKDKTYLGIVDYKSSEHKFSYQEAYYGRAMQMLTYLDAVKQNLPTLLDAPTAKDAELAGAVYLHLQNPILKAAEVLGEDPLTSLLKAEQYQGLLLDDPDLLTNLDTLFGTPDYSGSSLLFRGLRRTKTGKITSYGKLLVNSNELDLLLTHTERLIKRAATDIFDGRVDLAPFREQNRTALQYSPYKSVMQFDPLLKENNYRDLPSLNKDDVMARIAAEQEQEATDEHEI
>NZ_CP021479.1|WP_087612993.1|2354748_2358537_-|helicase-exonuclease-AddAB-subunit-AddA
MSTKFSFTPSQDQAIHQTGNNLLVSASAGSGKTRVLVQRVIERLKTGVGIDQILIVTFTKAAAAEMRERIQTALRQELAVSQGDSAQQQFYLRQLNQLPVADISTLDAFCLRLLQRYYYVIDLDPVFRLLADETENGLLRDEVWADLREDLYANDDSGLFARLTENFSGDRNDQGLADLVQQTYTFANATPNPTAWLAELPQPYQLDSDQLMTTSFYQQRLRPFFQSQLQQLQADLTSAQALANQAGLDKQAAHVTAVLENVAAVQQLVTGDSWNALRAAIQDFAWGRMPAVRKTNEDYPIYNELKTTYYDPARKQLDSLKKTYLIQDEQQAMTTIRRSGELVGELSRVVTAFRTAYRQEKQRRHVLDFADVEHAALAILTQDSDQSRQVAAQLRHQFAEIMVDEYQDTNGLQEAILTAIAEPAPQGNLFMVGDVKQSIYRFRQADPTLFMTKTDQYAADAAAGELIVLAENFRSMKNVDDFTNLIFKQLMDRELGEIDYMGAAQLKFGASYYPDTVTSTAELLVYLTEDAPESAGDADSEAMDATFQVDNKHQGEVLMVGQKIQQLIADQTPIYDREAKQVRPMTYGDITLLTPTRTNNLIITDELRRLGIPVVVNDAQNYFKTTEIQIMMALLQIIDNPYQDIPLAAVLRSPIVGLNENELALLRINQRTGDYYQAVLHFQRSFVPNQASDFQQAVYQKVSHFLEQLQEFRDIAQQDELVTLIWRIYQETGFLDYVGGMPAGEQRQANLHALYERAKSYEQSSFKGLFQFVRFVERLQERDDDLAGAPVQAADDAVSVMTIHGSKGLEFPVVFIMDASRQFNKQDQQGNYVMSGKTGIGIDYLDPDSRVKAPSLQKLVTAQAISRASLAEEMRKLYVALTRAESRVYIVGSHKTQEAAISAWEQAYQSPNLVLNATLREKNTLANYLDWIGMCLVRDPKFAAELRQGTTTFSGLAGDPATFAVHFVTAHDLGPTQGVNETAVDWLQAASETAAKVTTPPVDTEQLHQIMDFRYPHQAATATTAYQSVSEAKRLFEDPDNATIGEYQASATGQVGGHRFVTHDFARPDFLQTVREPLATEMGSATHLVLQQLDVTVTPTLNRVQGVIDQLVADQVLTAEVAQRIQPELILRFFSSSVGQQVLAAPDQLHREVPFSLLMPARSLFQDFQETDSQVLVHGIIDGYLTTPAGVILFDYKTDHVNAQNQAASIEKIVERYGGQVNLYAAALKQMTGQPIVGQYLYLLAIGELVAVPEQQVRRLSE
>NZ_CP021479.1|WP_011668834.1|2353751_2354657_+|hypothetical-protein
MTIITRIIKGCLCLLALGTVTVGSLSGRAQTEKPSALVKVGDYRASTDFLNLSAYYQTIRPVTVKVAYVSTYKTQHTIMQKLTLPAGLTVAGNLTTTKHGSYLVPSLQLYLARLSYPALQNSAKANYTLDPGTSAYSPQATISDTTKLRAFKRVAAPDYMPGYSHGDLYIGGAKAALSPVEPTTKSIRITPDGYVEVLKYDTKANAGLGFYQKPVSLAKIVKTRFHDPNRTLYLNHPLASVKTKAITQNGQTRYRLTLKNLHTPQHIAGDPETGTAGTFDSLYSIGGTTYYTFIGYDGVSN
>NZ_CP021479.1|WP_087612992.1|2352575_2353337_-|helix-turn-helix-transcriptional-regulator
MGWDLQFTHYLDDMQTYRSRDQTAKALILLGYVERDFIRFYRAGRIAEGIQFAKENLARSRLLLNELPPQQKRAQLHGLVDILALEGVQNHAFIYEFIQLRDDYHRQIKTLPVTTARYVPWIIEIVQDFGNLAAKDGLPYDDHLESTLDIIYYVSAHLRDKLTVKQVVDHVNQRCNPVGVQRAFSDEMQMSIRDYINVKKIREAQRALLTTTVSVKQIAQELGFYDTSDFSKRFKREIGQTPLEYRQINSQKD
>NZ_CP021479.1|WP_011668940.1|2369079_2369610_-|MarR-family-transcriptional-regulator
MSDLFKQETTASKLIEFGMLRHVADDIADRDDDHPERQMIFQGQGKILLALMQEDHLAQKELAERLNLTAQSTAEFVRKLEKKGFVTRMKSPTDQRVTVVSITDAGRKETTKNVQQIPPFLTILDDTELDQLAHILDKVNQHMYEEVNAANPTWFNKFHQVIMNRMLSQLHSGEDR
>NZ_CP021479.1|WP_041815768.1|2369755_2370691_+|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein
MQPSTAITVSHLSKTFGVKTVVDDLSFAVKPGEVFGLLGPNGAGKTTTLRMMTTLLKATSGTVTIFGHDVRKESRLARAMFGLTGQYASIDEDISARENLMIFSRLNGLSRTAAKQRTTELLEEFSLTASANKALSDFSGGMRRRLDLAVSLITRPGLIFLDEPTTGLDPRTRSQMWTTIRQLVAHGSTIVLTTQYLDEADALADRIAVIDHGKLIKLGTPTALKQQIGGATLTLSLAKATQGPLAQRLLAQALHAQPTLHGAQLTAHLENPNQITDLLVQLQAADISLANIAVQEPSLDDVFFALTTGKN
>NZ_CP021479.1|WP_011668942.1|2370705_2371482_+|ABC-transporter-permease
MEIQTQHGNLIGNTLTMAYRNLLKTLHNPDRFMDVIIQPVMFMLLFGYLFGGAIAGGVQAYLPTIVPGILIQTLLSAASGSGAQIREDLDSGVFDRFKSLPMAHIAPLAGQLFADILRLLVATVVSLLTGYAMGWRPTVGFGWIIVIAALAIFIGWAISWVFALFGLLAKSSSMVQSVSMMVMMLLSFLSNAFIPLKTLPHFMRVIADANPITYVITAIRQILAQGAWNNNAWIVLIFGIGIVVLFAPLTVWAYNHNN
>NZ_CP021479.1|WP_011668943.1|2371639_2372554_-|prenyltransferase
MPKWLNWSVFYELTEIYTAPLNVMWFILGAAIVQYHVHTVDWINVGLCLAVVFIFDLAVNVADNYYDYLHAHDREDYAQKTNPIGRLHLPAKGVFWLAWVLYAVAAIPGIVLVMRTGWSVAVFGVVGYLIGIFYTAGPHPINATPVSAAVVALAIAFGIQLTCVYVSIYGQQPLSWSIVGTTFLLCMPLTLIFFTVQLANDTSDRDEDIANHRYTLAVYLGKRRSVRLIQLFLVIGTLWTLVNVGLGLAPLVTALAVILLPVMWRGMRPFFAIQDKRKTFMAMVKSASLFFIAYPVLFALGTWL
>NZ_CP021479.1|WP_087612996.1|2372655_2375772_-|YfhO-family-protein
MRIAHHRWPLWVLYTLAFAVIAAISFGIFGVANRTLIWNMDGITQHYPLIREFHQLLMKSGLAGVTGWSWTFGLGADKLTTLAYYVLGDPFAYALALLPTRLLEVGYGWAIVLRLYAAGLAFLVLAKRYAFKPGSQLVGAVTYAFTGYSLMVGVHHPFFLLPMVWLPLLFVGIDRILQGKGWGFLAAVTGITILSNFYFAYILGLGSLIYALIRYFSCRERGQLAVSWLVATARFLAAAVTGLLISGVLLLPSLLMMLKSTRTVSIFANGLWLYPLNYYLTLSNTILTTGNTLNYWAVLGITGFGFLGCVYTLVHWRQHRWLAITLLAVIVGLLFPAVAAFFNVLSTPSNRWILLAAVPFGLALMTLMDHLTALSLPDRWWLLGSSFGLLGVIYLSNGFTFSNPARDLLTYGLLLATTLLVVVALPRRWTFGGIGILIGLNLINNAWGYYDPNLSNQATQQLRVSDATRYIQDYFDGAQSAVQSDHAFSRVSATRNYNLFRTVGNNMTMSHGLHGIMSYFSVQNGYVGQFSRDLGNAEYAMNAPMGQADDRTTLTQLLGVKYLFARTDQVTNHAALPYGYRAAKKIYPEQPVYGLSNGVGTQVLTTNLAFPLVYTQPQVLTTKAWHRLSLVDRERSLTQAAVTSQPVAGVKAAHYQSPKRTLAYTVTPDTIPVIDSTNKVIQYRLKQAAAGQKTGLNDKQLATYGTTIQTPQLTVDKNGLLSKQEVQQYGPMVQLNRDQAALQRVLTHNQQIIQRTTQANQTGLHQLTSDAQGQPIKYTVTLKHPQQAQGTELYLELDGISSQQLTTKDQLQTADNTSVLGNTPRSNLTKLNAWRTAISNPDLGDYWVTAKTRNATKTFSQFGLDNLSDYEPKHQVLLNLGYSQQLRKTIDVTFNATKQLNIKSAKLIAVPFGARYDQQVHAVQRRGLQHAQIRDNAVTGELTTPQASVMTTSIPYSSGWRLTVDGRPTATTVVNEGFVGARLAAGTHRIRLTYRTPWLIGGLILTIVGLVVWLGEMSWWHWRHPQAKTRATKSKSDA
>NZ_CP021479.1|WP_011668945.1|2376032_2376554_+|QueT-transporter-family-protein
MNSKKRVSGVSDTRSMVLAALIAALYVVLTTVLSALSFGPFQIRLSEMFNHLVVFNKRYIAAVTLGVFIANIIASPFGFLDIATGTIQTLLALLVMYWLSKFVHNRIAQMAINTVVAVFFMCMIAWEIAIVSKTAFWPTFWANWLSIGWGELVSMIFGGVVIYLLSLKIDFTK
>NZ_CP021479.1|WP_143453526.1|2376921_2377140_+|hypothetical-protein
MDYFLIEVVLLHIQKLAGHFAALIAVMSHVGKAECKTKAIRFVTARLNHQGITLPQPVISAAVEKAFSYTNI
>NZ_CP021479.1|WP_011666857.1|2377231_2378155_-|IS30-family-transposase
MSTTILSFQNRVVIDTLHNEGRSLRYIANYLDFSKTTIFNELHRLNGEYQAELAQTDFERKVSQRGRKSSLTKNLKHLIEEKIQVQKWSPEQVAHVVGIAYKTVYNWIDQGWLDVQLPDLPDHGIRRHRAKEKRGTFSHGRSIEKRPHKVETRQEFGHFEADTVLSGKRKGQAVATFVERKSRLTIVKRLHGRDSQFMTQAVLELASQLQDKLKTLTVDHGKEFANYQTIEQLTGTQVYFAHAYSPHERGSNENRNRVLRRFIPKGQAIEELSDYQLVQINWYLNSRPLKCLNWHTPIEIFLLNLRH
>NZ_CP021479.1|WP_107696508.1|2378313_2379021_-|hypothetical-protein
MRTKHAMDIGAREKTKSGYKPIYIKKNKLLSISAMNIRGKYPHFKTYVAVTLGDIHYAKINKVVYMKKFIRYTTANFTPVKTLRAPIRTQLLRQGTGFVMSSTHINQPTYSSALFVTLDNYIQTYSQARMTKINDKWMNADVDSDFAKLKPTDSVKVTKLVKTGTAYKIDYARPLKSFSDKKIGPHHYRLTIKQLGRQYQNYTPIDDTYDTAASWTNFTINTKPYFSGFADWGLD
>NZ_CP021479.1|WP_011668949.1|2379334_2381155_-|DUF2207-domain-containing-protein
MRYRQGVWWLLGLILALIGGCQMTTINAAASYTIKPFRMNVDVTRRGDANVTETMTYHFDDDYHGVYNVQDLRGIQGGRLTGVSTRLNDGGMRPARAVDSGDSRYQVSQSNQRLKVKVYRAVSAGDRLQVTYRFHLTGVVTNYADTAELNWKLIGAGWDEPLHNVRLTIQLPTQPVKQLQAWTHGPLTGHTAVQSKTGRVVMTIPENPANTFVESHLLFPTQVTAANPNTCTQKRRAAAQKQEAKLAADANAKRQQQRWLVVGGYAALTVGLVALLAGSYHWMRHHPANRYPHPIPVDHFFDVPGVAPAVAVALLNFRSPDTDALSGELMMAASRHEIKLEPVREKKHDTVRLTKTGTVTNIFLQRAFERLGSLDSFTLRDLKQFAKKDKGSRVSHWFKEWQNQVDEAAEVYQDGDNIAIRQRLLGIAWGLTFVIAAWIGVSALVDPLVFKLSAGLGLVVLFGSWTYISRQRRQVDRNTAEGLVLINEIGGFRRMLKDIGHFNTAKIGDLILWEQILPYAAAFGLAKQVADKLAIDFGKDVVAGALVAYPLYYPGAFNLSLGDMVQTSIAGAIDTSANFSSPSGGSGGFSGGSSGGFGGGSGGGAF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021479_2	2.3\|2368880\|32\|NZ_CP021479\|CRT	2368880-2368911	32	NZ_CP014917	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence	14304-14335	2	0.938
NZ_CP021479_2	2.3\|2368880\|32\|NZ_CP021479\|CRT	2368880-2368911	32	NZ_CP016798	Lactobacillus brevis strain TMW 1.2112 plasmid pl12112-1, complete sequence	3524-3555	2	0.938
NZ_CP021479_2	2.3\|2368880\|32\|NZ_CP021479\|CRT	2368880-2368911	32	NC_021904	Lactobacillus plantarum ZJ316 plasmid pLP-ZJ102, complete sequence	15781-15812	2	0.938
NZ_CP021479_2	2.3\|2368880\|32\|NZ_CP021479\|CRT	2368880-2368911	32	NC_005952	Lactobacillus brevis plasmid pRH45II, complete sequence	23229-23260	2	0.938
NZ_CP021479_2	2.8\|2368882\|31\|NZ_CP021479\|PILER-CR	2368882-2368912	31	NC_021904	Lactobacillus plantarum ZJ316 plasmid pLP-ZJ102, complete sequence	15782-15812	2	0.935
NZ_CP021479_2	2.8\|2368882\|31\|NZ_CP021479\|PILER-CR	2368882-2368912	31	NZ_CP014917	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence	14304-14334	2	0.935
NZ_CP021479_2	2.8\|2368882\|31\|NZ_CP021479\|PILER-CR	2368882-2368912	31	NZ_CP016798	Lactobacillus brevis strain TMW 1.2112 plasmid pl12112-1, complete sequence	3524-3554	2	0.935
NZ_CP021479_2	2.8\|2368882\|31\|NZ_CP021479\|PILER-CR	2368882-2368912	31	NC_005952	Lactobacillus brevis plasmid pRH45II, complete sequence	23229-23259	2	0.935
NZ_CP021479_2	2.6\|2368880\|33\|NZ_CP021479\|CRISPRCasFinder	2368880-2368912	33	NC_021904	Lactobacillus plantarum ZJ316 plasmid pLP-ZJ102, complete sequence	15781-15813	3	0.909
NZ_CP021479_2	2.6\|2368880\|33\|NZ_CP021479\|CRISPRCasFinder	2368880-2368912	33	NZ_CP014917	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence	14303-14335	3	0.909
NZ_CP021479_2	2.6\|2368880\|33\|NZ_CP021479\|CRISPRCasFinder	2368880-2368912	33	NZ_CP016798	Lactobacillus brevis strain TMW 1.2112 plasmid pl12112-1, complete sequence	3523-3555	3	0.909
NZ_CP021479_2	2.6\|2368880\|33\|NZ_CP021479\|CRISPRCasFinder	2368880-2368912	33	NC_005952	Lactobacillus brevis plasmid pRH45II, complete sequence	23228-23260	3	0.909
NZ_CP021479_2	2.1\|2368758\|32\|NZ_CP021479\|CRT	2368758-2368789	32	KY979109	Salmonella phage SHP1, complete genome	32803-32834	7	0.781
NZ_CP021479_2	2.1\|2368758\|32\|NZ_CP021479\|CRT	2368758-2368789	32	NC_019500	Enterobacteria phage Bp7, complete genome	22259-22290	7	0.781
NZ_CP021479_2	2.4\|2368758\|33\|NZ_CP021479\|CRISPRCasFinder	2368758-2368790	33	KY979109	Salmonella phage SHP1, complete genome	32802-32834	8	0.758
NZ_CP021479_2	2.4\|2368758\|33\|NZ_CP021479\|CRISPRCasFinder	2368758-2368790	33	NC_019500	Enterobacteria phage Bp7, complete genome	22258-22290	8	0.758

1. spacer 2.3|2368880|32|NZ_CP021479|CRT matches to NZ_CP014917 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence) position: , mismatch: 2, identity: 0.938

aataatgcgggggtattcgccttcttactagt	CRISPR spacer
aataacgcgggagtattcgccttcttactagt	Protospacer
*****.*****.********************

2. spacer 2.3|2368880|32|NZ_CP021479|CRT matches to NZ_CP016798 (Lactobacillus brevis strain TMW 1.2112 plasmid pl12112-1, complete sequence) position: , mismatch: 2, identity: 0.938

aataatgcgggggtattcgccttcttactagt	CRISPR spacer
aataatgcgggagtattcgctttcttactagt	Protospacer
***********.********.***********

3. spacer 2.3|2368880|32|NZ_CP021479|CRT matches to NC_021904 (Lactobacillus plantarum ZJ316 plasmid pLP-ZJ102, complete sequence) position: , mismatch: 2, identity: 0.938

aataatgcgggggtattcgccttcttactagt	CRISPR spacer
aataatgcgggagtattcgctttcttactagt	Protospacer
***********.********.***********

4. spacer 2.3|2368880|32|NZ_CP021479|CRT matches to NC_005952 (Lactobacillus brevis plasmid pRH45II, complete sequence) position: , mismatch: 2, identity: 0.938

aataatgcgggggtattcgccttcttactagt	CRISPR spacer
aataatgcgggagtattcgctttcttactagt	Protospacer
***********.********.***********

5. spacer 2.8|2368882|31|NZ_CP021479|PILER-CR matches to NC_021904 (Lactobacillus plantarum ZJ316 plasmid pLP-ZJ102, complete sequence) position: , mismatch: 2, identity: 0.935

ataatgcgggggtattcgccttcttactagt	CRISPR spacer
ataatgcgggagtattcgctttcttactagt	Protospacer
**********.********.***********

6. spacer 2.8|2368882|31|NZ_CP021479|PILER-CR matches to NZ_CP014917 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence) position: , mismatch: 2, identity: 0.935

ataatgcgggggtattcgccttcttactagt	CRISPR spacer
ataacgcgggagtattcgccttcttactagt	Protospacer
****.*****.********************

7. spacer 2.8|2368882|31|NZ_CP021479|PILER-CR matches to NZ_CP016798 (Lactobacillus brevis strain TMW 1.2112 plasmid pl12112-1, complete sequence) position: , mismatch: 2, identity: 0.935

ataatgcgggggtattcgccttcttactagt	CRISPR spacer
ataatgcgggagtattcgctttcttactagt	Protospacer
**********.********.***********

8. spacer 2.8|2368882|31|NZ_CP021479|PILER-CR matches to NC_005952 (Lactobacillus brevis plasmid pRH45II, complete sequence) position: , mismatch: 2, identity: 0.935

ataatgcgggggtattcgccttcttactagt	CRISPR spacer
ataatgcgggagtattcgctttcttactagt	Protospacer
**********.********.***********

9. spacer 2.6|2368880|33|NZ_CP021479|CRISPRCasFinder matches to NC_021904 (Lactobacillus plantarum ZJ316 plasmid pLP-ZJ102, complete sequence) position: , mismatch: 3, identity: 0.909

aataatgcgggggtattcgccttcttactagtg	CRISPR spacer
aataatgcgggagtattcgctttcttactagta	Protospacer
***********.********.***********.

10. spacer 2.6|2368880|33|NZ_CP021479|CRISPRCasFinder matches to NZ_CP014917 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence) position: , mismatch: 3, identity: 0.909

aataatgcgggggtattcgccttcttactagtg	CRISPR spacer
aataacgcgggagtattcgccttcttactagta	Protospacer
*****.*****.********************.

11. spacer 2.6|2368880|33|NZ_CP021479|CRISPRCasFinder matches to NZ_CP016798 (Lactobacillus brevis strain TMW 1.2112 plasmid pl12112-1, complete sequence) position: , mismatch: 3, identity: 0.909

aataatgcgggggtattcgccttcttactagtg	CRISPR spacer
aataatgcgggagtattcgctttcttactagta	Protospacer
***********.********.***********.

12. spacer 2.6|2368880|33|NZ_CP021479|CRISPRCasFinder matches to NC_005952 (Lactobacillus brevis plasmid pRH45II, complete sequence) position: , mismatch: 3, identity: 0.909

aataatgcgggggtattcgccttcttactagtg	CRISPR spacer
aataatgcgggagtattcgctttcttactagta	Protospacer
***********.********.***********.

13. spacer 2.1|2368758|32|NZ_CP021479|CRT matches to KY979109 (Salmonella phage SHP1, complete genome) position: , mismatch: 7, identity: 0.781

gcttaaaatcaagcagtcgttgggctacgtca	CRISPR spacer
tcttaacatcaagcagtcgtttggcattatca	Protospacer
 ***** ************** ***  ..***

14. spacer 2.1|2368758|32|NZ_CP021479|CRT matches to NC_019500 (Enterobacteria phage Bp7, complete genome) position: , mismatch: 7, identity: 0.781

gcttaaaatcaagcagtcgttgggctacgtca	CRISPR spacer
tcttaacatcaagcagtcgtttggcattatca	Protospacer
 ***** ************** ***  ..***

15. spacer 2.4|2368758|33|NZ_CP021479|CRISPRCasFinder matches to KY979109 (Salmonella phage SHP1, complete genome) position: , mismatch: 8, identity: 0.758

gcttaaaatcaagcagtcgttgggctacgtcaa	CRISPR spacer
tcttaacatcaagcagtcgtttggcattatcac	Protospacer
 ***** ************** ***  ..***

16. spacer 2.4|2368758|33|NZ_CP021479|CRISPRCasFinder matches to NC_019500 (Enterobacteria phage Bp7, complete genome) position: , mismatch: 8, identity: 0.758

gcttaaaatcaagcagtcgttgggctacgtcaa	CRISPR spacer
tcttaacatcaagcagtcgtttggcattatcac	Protospacer
 ***** ************** ***  ..***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29196 : 64238

unidentified_phage(23.08%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015473476.1\|29196_30126_-\|transposase	IS30-like element ISLpl1 family transposase	H7BW61	unidentified_phage	8.5e-20	29.9
WP_087612612.1\|30543_31074_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_042253372.1\|31214_32390_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.7e-55	37.1
WP_035465373.1\|32370_32733_+	hypothetical protein	NA	NA	NA	NA
WP_011666839.1\|33181_34792_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011666840.1\|34997_35237_+	hypothetical protein	NA	NA	NA	NA
WP_024855296.1\|35276_35987_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_011666843.1\|37243_37960_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.0e-41	39.6
WP_015473005.1\|38004_39861_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	7.1e-34	34.6
WP_087612613.1\|39847_41149_+	hypothetical protein	NA	NA	NA	NA
WP_043023085.1\|41170_42025_+	two-component system regulatory protein YycI	NA	NA	NA	NA
WP_011666847.1\|42170_42998_+	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	2.7e-33	34.9
WP_035465512.1\|43249_44491_+	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	6.5e-07	26.2
WP_011666849.1\|45027_45507_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_041816430.1\|45730_46942_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_011666851.1\|47772_47997_+	hypothetical protein	NA	NA	NA	NA
WP_011666853.1\|48423_48885_-	hypothetical protein	NA	NA	NA	NA
WP_087612614.1\|49184_51068_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_082265486.1\|52007_52277_+	hypothetical protein	NA	NA	NA	NA
WP_011666857.1\|52260_53184_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	6.2e-31	30.4
WP_012695418.1\|53392_54418_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.7e-41	35.5
WP_087612615.1\|55483_57274_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.5e-89	39.9
WP_086231762.1\|57724_59260_+	hypothetical protein	NA	NA	NA	NA
WP_087612616.1\|59380_60310_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW61	unidentified_phage	2.9e-20	29.9
WP_087612617.1\|60255_61077_+	alpha/beta hydrolase	A0A2P1EM31	Moumouvirus	2.0e-60	45.7
WP_011666864.1\|61202_62147_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	2.4e-22	28.7
WP_087612618.1\|62146_62743_+	sugar O-acetyltransferase	NA	NA	NA	NA
WP_087609254.1\|62808_63708_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.4e-43	35.8
WP_015473803.1\|63704_64238_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

772271 : 805989

Staphylococcus_phage(28.57%)

portal,head,integrase,terminase

attL 775849:775864|attR 811468:811483

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087612716.1\|772271_773426_-\|integrase	site-specific integrase	S6C485	Thermus_phage	5.0e-54	36.8
WP_087609329.1\|773475_774372_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_087609330.1\|774515_774734_+	helix-turn-helix transcriptional regulator	D7RWM4	Brochothrix_phage	1.8e-13	60.0
WP_087612717.1\|774735_775407_+	Rha family transcriptional regulator	Q9AZH8	Lactococcus_phage	4.9e-17	39.5
WP_087612718.1\|775420_775705_+	hypothetical protein	NA	NA	NA	NA
775849:775864	attL	NA	NA	NA	NA
WP_041815237.1\|776015_776372_+	hypothetical protein	NA	NA	NA	NA
WP_015473487.1\|776364_776679_+	hypothetical protein	NA	NA	NA	NA
WP_015473488.1\|776671_776896_+	hypothetical protein	NA	NA	NA	NA
WP_082265195.1\|776898_777687_+	bifunctional DNA primase/polymerase	A0A060ADS5	Enterococcus_phage	2.3e-18	33.2
WP_082265196.1\|777691_779092_+	virulence protein	Q4ZD27	Staphylococcus_phage	2.4e-74	37.7
WP_024525561.1\|779333_779708_+	hypothetical protein	NA	NA	NA	NA
WP_087612719.1\|779713_780058_+	hypothetical protein	NA	NA	NA	NA
WP_087612720.1\|780054_780468_+	hypothetical protein	NA	NA	NA	NA
WP_087612721.1\|782180_782576_-	DUF1093 domain-containing protein	NA	NA	NA	NA
WP_024525558.1\|783468_784203_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.7e-35	36.4
WP_024855112.1\|784199_785669_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	1.9e-21	30.8
WP_011667990.1\|787057_787924_+	glucose transporter GlcU	NA	NA	NA	NA
WP_011667989.1\|788053_789400_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_015473497.1\|789687_792705_+	YfhO family protein	NA	NA	NA	NA
WP_015473498.1\|793070_793625_-	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_011667986.1\|793730_794294_+	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_082265203.1\|795095_796253_-\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	7.5e-66	37.3
WP_082265204.1\|796310_796928_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_063489188.1\|797083_797263_+	helix-turn-helix domain-containing protein	E9LUT5	Lactobacillus_phage	7.6e-18	81.0
WP_082265205.1\|797520_797748_+	hypothetical protein	NA	NA	NA	NA
WP_082265206.1\|797759_798560_+	bifunctional DNA primase/polymerase	NA	NA	NA	NA
WP_087612722.1\|798559_799954_+	virulence protein	A0A1W6JQD6	Staphylococcus_phage	1.1e-68	41.9
WP_082265208.1\|800116_800596_+	hypothetical protein	NA	NA	NA	NA
WP_082265209.1\|800611_800803_+	hypothetical protein	NA	NA	NA	NA
WP_082265210.1\|800789_801134_+\|head	phage head closure protein	E9LUQ5	Lactobacillus_phage	1.7e-13	38.9
WP_082265211.1\|801347_801758_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	1.6e-18	47.4
WP_082265212.1\|802567_803041_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_082265213.1\|803037_804735_+\|terminase	terminase large subunit	A0A2H4JBN3	uncultured_Caudovirales_phage	6.3e-122	40.5
WP_082265214.1\|804694_804892_+	hypothetical protein	NA	NA	NA	NA
WP_082265215.1\|804888_805989_+\|portal	phage portal protein	H9A113	Staphylococcus_phage	8.8e-48	34.3
811468:811483	attR	NA	NA	NA	NA

DBSCAN-SWA_3

953088 : 986598

Lactobacillus_phage(44.44%)

portal,integrase,terminase,capsid

attL 940642:940655|attR 985605:985618

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
940642:940655	attL	NA	NA	NA	NA
WP_148201728.1\|953088_954552_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_087612735.1\|954760_955510_-	hypothetical protein	NA	NA	NA	NA
WP_096109852.1\|955788_956637_-	hypothetical protein	NA	NA	NA	NA
WP_087612737.1\|956649_957126_-	hypothetical protein	NA	NA	NA	NA
WP_087612738.1\|957129_957537_-	helix-turn-helix transcriptional regulator	E3W8B9	Leuconostoc_phage	2.5e-08	38.3
WP_087612739.1\|957799_958015_+	hypothetical protein	NA	NA	NA	NA
WP_087612740.1\|958027_958357_+	hypothetical protein	NA	NA	NA	NA
WP_087612741.1\|958383_958605_+	hypothetical protein	A0A182BQC3	Lactococcus_phage	1.6e-09	49.3
WP_087612742.1\|958591_959059_-	hypothetical protein	NA	NA	NA	NA
WP_191982430.1\|959118_959877_+	Rha family transcriptional regulator	A0A1B0YEA7	Lactobacillus_phage	1.4e-33	49.0
WP_087612744.1\|959889_960087_+	hypothetical protein	NA	NA	NA	NA
WP_157662338.1\|960122_960272_+	hypothetical protein	NA	NA	NA	NA
WP_087612745.1\|960254_960560_-	hypothetical protein	NA	NA	NA	NA
WP_011667896.1\|960627_960882_+	hypothetical protein	NA	NA	NA	NA
WP_011667895.1\|960970_961249_+	hypothetical protein	NA	NA	NA	NA
WP_087612746.1\|961377_961641_+	helix-turn-helix transcriptional regulator	Q4ZDX6	Staphylococcus_virus	2.7e-08	48.5
WP_087612748.1\|961948_962842_+	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	6.9e-27	33.1
WP_087612749.1\|962843_963821_+	AAA family ATPase	Q9ZXC7	Bacillus_phage	1.5e-59	40.9
WP_157662339.1\|963822_964386_+	DUF669 domain-containing protein	NA	NA	NA	NA
WP_087612751.1\|964404_965232_+	conserved phage C-terminal domain-containing protein	A0A0B5D175	Listeria_phage	2.1e-33	54.9
WP_157662340.1\|965251_966469_+	DNA helicase	A0A0P0IXJ2	Lactobacillus_phage	1.4e-59	38.4
WP_087612753.1\|966461_966887_+	hypothetical protein	NA	NA	NA	NA
WP_035466251.1\|966876_967119_+	DUF3310 domain-containing protein	E5DV94	Deep-sea_thermophilic_phage	3.5e-10	46.0
WP_157662341.1\|967129_967516_+	hypothetical protein	NA	NA	NA	NA
WP_042254487.1\|967508_967724_+	hypothetical protein	NA	NA	NA	NA
WP_087612756.1\|967929_968376_+	adenine methyltransferase	A0A2P0ZL79	Lactobacillus_phage	2.9e-50	63.8
WP_157662342.1\|968538_968787_+	hypothetical protein	D6PSU9	Lactobacillus_phage	7.5e-16	59.3
WP_087612758.1\|968783_969245_+	DUF1064 domain-containing protein	A0A2P0ZKV6	Lactobacillus_phage	1.1e-25	46.9
WP_047021008.1\|969258_969465_+	hypothetical protein	NA	NA	NA	NA
WP_087609417.1\|969480_969732_+	hypothetical protein	A0A0P0IJX1	Lactobacillus_phage	1.8e-20	68.4
WP_087612759.1\|969732_969984_+	hypothetical protein	NA	NA	NA	NA
WP_087612760.1\|969987_970467_+	SAM-dependent methyltransferase	A0A2H4PBJ4	Lactobacillus_phage	7.6e-65	71.1
WP_011667875.1\|970506_970806_+	hypothetical protein	NA	NA	NA	NA
WP_087612762.1\|971126_971582_+	transcriptional regulator	D6PSV8	Lactobacillus_phage	2.9e-45	56.2
WP_143451253.1\|972078_972246_+	BC1881 family protein	NA	NA	NA	NA
WP_087612763.1\|972445_972715_-	DUF3892 domain-containing protein	A0A059NT53	Lactococcus_phage	3.6e-11	61.0
WP_087612764.1\|973549_973876_+	hypothetical protein	NA	NA	NA	NA
WP_087612765.1\|973887_974130_+	DUF2829 domain-containing protein	A0A1X9HVT2	Ruegeria_phage	8.7e-09	38.4
WP_087612766.1\|974126_974327_+	hypothetical protein	NA	NA	NA	NA
WP_087612767.1\|974361_975120_+\|terminase	terminase small subunit	V5URT8	Oenococcus_phage	2.9e-58	48.6
WP_087612768.1\|975126_975714_-\|integrase	site-specific integrase	E2ELN7	Clostridium_phage	2.8e-21	34.2
WP_087612769.1\|975858_977175_+\|terminase	PBSX family phage terminase large subunit	V5UQR5	Oenococcus_phage	4.1e-161	61.9
WP_157662343.1\|977186_978710_+\|portal	phage portal protein	A0A0P0IJV3	Lactobacillus_phage	8.9e-75	37.8
WP_087612771.1\|978630_979566_+	hypothetical protein	A1EAE3	Streptococcus_phage	8.6e-12	23.4
WP_157662344.1\|979759_980413_+	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	2.5e-26	53.1
WP_042254460.1\|980424_980826_+	hypothetical protein	A0A0K2CNR0	Brevibacillus_phage	2.9e-09	32.7
WP_087612773.1\|980843_981959_+\|capsid	major capsid protein	S5MNB6	Brevibacillus_phage	5.8e-47	33.5
WP_047020998.1\|982131_982482_+	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_087612774.1\|982478_982991_+	hypothetical protein	L7TME2	Rhizobium_phage	2.4e-08	34.1
WP_087612775.1\|983005_983302_+	hypothetical protein	NA	NA	NA	NA
WP_042254452.1\|983316_983700_+	hypothetical protein	NA	NA	NA	NA
WP_011667855.1\|983683_984172_+	hypothetical protein	NA	NA	NA	NA
WP_087612776.1\|984189_985341_+	DUF3383 family protein	NA	NA	NA	NA
WP_087612777.1\|985358_985841_+	hypothetical protein	NA	NA	NA	NA
985605:985618	attR	NA	NA	NA	NA
WP_060416804.1\|985971_986598_+	hypothetical protein	D6PSY5	Lactobacillus_phage	3.0e-13	44.6

DBSCAN-SWA_4

1269804 : 1280482

Staphylococcus_phage(37.5%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015473763.1\|1269804_1270656_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.7e-14	33.6
WP_015473764.1\|1270824_1271466_+	hemolysin III family protein	NA	NA	NA	NA
WP_082265283.1\|1271752_1273015_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	3.2e-46	31.9
WP_024855005.1\|1273067_1273559_-	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	1.5e-23	37.8
WP_087612820.1\|1273575_1274526_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	2.6e-117	62.1
WP_087612821.1\|1274537_1276430_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	4.7e-49	29.2
WP_024855004.1\|1276458_1277652_-\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	1.9e-35	40.2
WP_042254316.1\|1277827_1278724_+	YitT family protein	M1Q1P6	Streptococcus_phage	1.6e-52	38.8
WP_087612822.1\|1278841_1280101_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011667553.1\|1280206_1280482_-	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	3.1e-26	68.5

DBSCAN-SWA_5

1515666 : 1565810

Lactobacillus_phage(85.29%)

capsid,plate,terminase,holin,transposase,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011668216.1\|1515666_1517358_-\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	7.6e-75	32.0
WP_011668217.1\|1517829_1518051_-	DUF2187 domain-containing protein	NA	NA	NA	NA
WP_011668218.1\|1518384_1519644_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JAS1	uncultured_Caudovirales_phage	1.8e-17	40.0
WP_011668219.1\|1519704_1520238_+	dihydrofolate reductase family protein	NA	NA	NA	NA
WP_011668220.1\|1520304_1520646_+	YisL family protein	NA	NA	NA	NA
WP_011668221.1\|1520859_1521573_-	amino acid racemase	NA	NA	NA	NA
WP_041815400.1\|1521579_1522836_-	carboxylate--amine ligase	NA	NA	NA	NA
WP_011668223.1\|1522970_1524854_-	asparagine synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
WP_021742205.1\|1524997_1525726_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_011668225.1\|1525834_1527244_+	C69 family dipeptidase	NA	NA	NA	NA
WP_011668226.1\|1527313_1527550_+	hypothetical protein	NA	NA	NA	NA
WP_087612839.1\|1527697_1529500_-	cell surface protein	NA	NA	NA	NA
WP_011668228.1\|1530051_1530303_-	hypothetical protein	NA	NA	NA	NA
WP_143453517.1\|1530479_1530662_-	hypothetical protein	NA	NA	NA	NA
WP_011668230.1\|1531038_1533549_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.9e-139	32.4
WP_011668231.1\|1533754_1534408_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.1e-13	47.6
WP_086231898.1\|1535029_1537306_-	S8 family peptidase	NA	NA	NA	NA
WP_086231899.1\|1537319_1538393_-	ATP-binding protein	NA	NA	NA	NA
WP_087612840.1\|1538687_1539740_-	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	D6PSS2	Lactobacillus_phage	1.3e-173	93.2
WP_087612841.1\|1539739_1540252_-	hypothetical protein	D6PSS1	Lactobacillus_phage	7.9e-60	74.3
WP_035465581.1\|1540248_1540623_-\|holin	phage holin family protein	A0A097BY69	Enterococcus_phage	1.6e-17	41.4
WP_087612842.1\|1540709_1540871_-	hypothetical protein	D6PSR8	Lactobacillus_phage	4.6e-14	75.0
WP_087612843.1\|1541029_1541482_-	hypothetical protein	NA	NA	NA	NA
WP_087612844.1\|1541496_1541997_-	hypothetical protein	NA	NA	NA	NA
WP_087612845.1\|1541999_1542338_-	hypothetical protein	NA	NA	NA	NA
WP_087612846.1\|1542337_1543786_-	hypothetical protein	NA	NA	NA	NA
WP_087612847.1\|1543788_1544448_-	hypothetical protein	D6PT00	Lactobacillus_phage	5.6e-74	83.6
WP_086231906.1\|1544437_1545616_-\|plate	baseplate J/gp47 family protein	D6PSZ9	Lactobacillus_phage	8.4e-182	82.4
WP_087612848.1\|1545602_1546001_-	DUF2634 domain-containing protein	D6PSZ8	Lactobacillus_phage	5.4e-48	78.4
WP_157660940.1\|1546000_1546225_-	hypothetical protein	D6PSZ7	Lactobacillus_phage	4.7e-33	97.3
WP_191982421.1\|1546344_1547640_-	hypothetical protein	D6PSZ6	Lactobacillus_phage	4.1e-206	90.8
WP_179858813.1\|1547575_1547968_-	hypothetical protein	D6PSZ5	Lactobacillus_phage	1.8e-67	97.7
WP_015474091.1\|1547979_1548627_-	LysM peptidoglycan-binding domain-containing protein	D6PSZ4	Lactobacillus_phage	3.4e-108	92.1
WP_087612851.1\|1548626_1554230_-\|tail	phage tail tape measure protein	D6PSY9	Lactobacillus_phage	2.9e-179	89.4
WP_155275711.1\|1554244_1554415_-	hypothetical protein	D6PSY6	Lactobacillus_phage	8.7e-24	98.1
WP_087612852.1\|1554425_1554800_-	hypothetical protein	D6PSY5	Lactobacillus_phage	1.3e-67	100.0
WP_087612853.1\|1554870_1555269_-	hypothetical protein	D6PSY4	Lactobacillus_phage	1.1e-72	100.0
WP_087612854.1\|1555283_1556321_-	DUF3383 family protein	D6PSY3	Lactobacillus_phage	2.3e-138	93.6
WP_087612855.1\|1556333_1556804_-	hypothetical protein	D6PSY2	Lactobacillus_phage	3.3e-60	96.6
WP_087612856.1\|1556796_1557171_-	hypothetical protein	D6PSY1	Lactobacillus_phage	3.2e-66	98.4
WP_086231916.1\|1557170_1557773_-	hypothetical protein	D6PSY0	Lactobacillus_phage	1.3e-98	88.9
WP_087612857.1\|1557769_1558096_-	DUF4054 domain-containing protein	D6PSX9	Lactobacillus_phage	5.0e-52	95.4
WP_015474101.1\|1558107_1558470_-	hypothetical protein	D6PSX8	Lactobacillus_phage	3.6e-59	100.0
WP_087612858.1\|1558480_1559359_-	encapsulin	D6PSX7	Lactobacillus_phage	5.2e-160	98.3
WP_086231920.1\|1559373_1559838_-	hypothetical protein	D6PSX6	Lactobacillus_phage	1.9e-76	98.1
WP_086231921.1\|1559852_1560956_-	DUF2213 domain-containing protein	D6PSX5	Lactobacillus_phage	2.7e-158	89.9
WP_157662350.1\|1560967_1561255_-	LysM peptidoglycan-binding domain-containing protein	D6PSX4	Lactobacillus_phage	3.4e-20	98.0
WP_087612860.1\|1561277_1562105_-\|capsid	minor capsid protein	D6PSX3	Lactobacillus_phage	1.9e-132	98.8
WP_087612861.1\|1562107_1563469_-	DUF1073 domain-containing protein	D6PSX2	Lactobacillus_phage	1.8e-260	98.9
WP_191982436.1\|1563485_1564817_-\|terminase	PBSX family phage terminase large subunit	D6PSX1	Lactobacillus_phage	3.0e-167	99.3
WP_087612863.1\|1564785_1565562_-	TerS	D6PSW8	Lactobacillus_phage	4.1e-108	91.3
WP_060416883.1\|1565603_1565810_-	hypothetical protein	D6PSW6	Lactobacillus_phage	4.5e-22	96.1

DBSCAN-SWA_6

1569193 : 1583148

Lactobacillus_phage(71.43%)

integrase

attL 1570067:1570079|attR 1583270:1583282

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065201455.1\|1569193_1569463_+	DUF3892 domain-containing protein	A0A059NT53	Lactococcus_phage	3.6e-11	61.0
WP_139592682.1\|1569663_1569831_-	BC1881 family protein	NA	NA	NA	NA
1570067:1570079	attL	NA	NA	NA	NA
WP_191982437.1\|1570372_1570810_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	1.6e-77	98.6
WP_086231630.1\|1571029_1571329_-	hypothetical protein	NA	NA	NA	NA
WP_191981957.1\|1571413_1571608_-	hypothetical protein	NA	NA	NA	NA
WP_087612867.1\|1571776_1572220_-	adenine methyltransferase	A0A2P0ZL79	Lactobacillus_phage	2.3e-47	61.0
WP_087612868.1\|1572212_1572632_-	hypothetical protein	D6PSU8	Lactobacillus_phage	5.3e-22	61.0
WP_087612869.1\|1572747_1573191_-	RusA family crossover junction endodeoxyribonuclease	D6PSU4	Lactobacillus_phage	8.4e-42	61.1
WP_087609347.1\|1573183_1573894_-	antA/AntB antirepressor family protein	A0A059NT90	Lactococcus_phage	3.7e-31	35.2
WP_157662351.1\|1573905_1574313_-	hypothetical protein	NA	NA	NA	NA
WP_087612870.1\|1574378_1575251_-	DnaD domain protein	D6PSU3	Lactobacillus_phage	1.4e-16	63.4
WP_087612871.1\|1575298_1576342_-	hypothetical protein	E5DV80	Deep-sea_thermophilic_phage	1.7e-61	59.1
WP_087612872.1\|1576341_1576887_-	host-nuclease inhibitor Gam family protein	E9LUU0	Lactobacillus_phage	1.2e-29	40.1
WP_087612873.1\|1576886_1577201_-	hypothetical protein	NA	NA	NA	NA
WP_157128260.1\|1577310_1577469_-	hypothetical protein	D6PST6	Lactobacillus_phage	3.3e-17	78.8
WP_085768829.1\|1577471_1577783_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_069360054.1\|1577788_1578295_-	hypothetical protein	NA	NA	NA	NA
WP_157662352.1\|1578351_1578522_-	hypothetical protein	NA	NA	NA	NA
WP_086231641.1\|1578676_1578925_+	hypothetical protein	NA	NA	NA	NA
WP_087612874.1\|1578913_1579099_-	hypothetical protein	NA	NA	NA	NA
WP_087612875.1\|1579173_1579554_+	DUF2513 domain-containing protein	A0A0H4TJ44	Erysipelothrix_phage	3.1e-13	37.5
WP_042254721.1\|1579550_1579748_-	hypothetical protein	NA	NA	NA	NA
WP_047021620.1\|1579747_1579975_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_047021619.1\|1580115_1580496_+	helix-turn-helix domain-containing protein	D6PSS9	Lactobacillus_phage	8.8e-24	53.9
WP_080628795.1\|1580524_1580911_+	ImmA/IrrE family metallo-endopeptidase	D6PSS8	Lactobacillus_phage	1.4e-69	97.7
WP_086231643.1\|1581009_1581855_+	hypothetical protein	NA	NA	NA	NA
WP_087612876.1\|1582005_1583148_+\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	1.1e-85	45.7
1583270:1583282	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2190532 : 2196993

Lactobacillus_phage(33.33%)

integrase

attL 2188442:2188460|attR 2197077:2197095

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2188442:2188460	attL	NA	NA	NA	NA
WP_041815643.1\|2190532_2190799_-	DUF3102 domain-containing protein	C5IUM1	Streptococcus_phage	3.3e-17	56.6
WP_015474392.1\|2190835_2191375_-	hypothetical protein	NA	NA	NA	NA
WP_087612970.1\|2191439_2191892_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	1.3e-37	53.4
WP_087612971.1\|2192368_2193217_-	conserved phage C-terminal domain-containing protein	A0A1W6JNI1	Staphylococcus_phage	7.2e-34	38.2
WP_041815646.1\|2193228_2193492_-	hypothetical protein	NA	NA	NA	NA
WP_024526214.1\|2193963_2194233_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015474397.1\|2194249_2194942_-	Rha family transcriptional regulator	A0A2H4PAV0	Aphanizomenon_phage	4.4e-05	34.8
WP_015474398.1\|2194959_2195154_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015474399.1\|2195285_2195780_+	helix-turn-helix domain-containing protein	L0P7E1	Lactobacillus_phage	4.2e-10	57.6
WP_041815649.1\|2195844_2196993_+\|integrase	site-specific integrase	A0A172LN96	Lactococcus_phage	9.7e-58	35.4
2197077:2197095	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021479

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection