CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP021487	Pediococcus acidilactici strain SRCM100313 chromosome, complete genome	3 crisprs	cas1,cas2,csn2,DEDDh,DinG,csa3,cas3	10	6
NZ_CP021488	Pediococcus acidilactici strain SRCM100313 plasmid pPl313-1, complete sequence	0 crisprs	NA	0	0
NZ_CP021489	Pediococcus acidilactici strain SRCM100313 plasmid pPl313-2 sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021487_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021487_1

438413-439040

TypeII-A

Consensus_repeat	Method
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	PILER-CR
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	CRISPRCasFinder
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CRT

9 spacers

csn2,cas2,cas1

The CRISPR arrays of NZ_CP021487_1

>merge|NZ_CP021487|1|438413-439040|PILER-CR,CRISPRCasFinder,CRT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATTAATTTAGAGCTGTATTTGAATAAGCACCCTGTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATTAGCATGTCGGCACTCGTCCCGCCTACCCGTGTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATCGTCTGGGGTTAAGATTGCGACTGTGTCGCAGTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATCATAACCTACCTCCGATACGTGTTAATCATTGTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATCGTTCCCACATGAGTGATTACTGGAATGCGCGTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATCGTTCAGTGTTGAGATTGTAGGAAATTGTTAGTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATCCAATATTAATATCTTCAATCCAATTGGACTGTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATCTTGCAATCGGAAAAGCAGCAGGTATTCCAGGTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATCACGATTTACCGTTTTAGGAATGATTTAGATGTTTCAGAGAATGTTAAATCAATAAGGTTGGCAA

>NZ_CP021487|1|1|438413-438909|PILER-CR
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	TAATTTAGAGCTGTATTTGAATAAGCACCCT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	TAGCATGTCGGCACTCGTCCCGCCTACCCGT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CGTCTGGGGTTAAGATTGCGACTGTGTCGCA
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CATAACCTACCTCCGATACGTGTTAATCATT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CGTTCCCACATGAGTGATTACTGGAATGCGC
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CGTTCAGTGTTGAGATTGTAGGAAATTGTTA
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CCAATATTAATATCTTCAATCCAATTGGACT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT

>NZ_CP021487|1|1|438413-438976|CRISPRCasFinder
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATT	AATTTAGAGCTGTATTTGAATAAGCACCCT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATT	AGCATGTCGGCACTCGTCCCGCCTACCCGT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	GTCTGGGGTTAAGATTGCGACTGTGTCGCA
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	ATAACCTACCTCCGATACGTGTTAATCATT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	GTTCCCACATGAGTGATTACTGGAATGCGC
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	GTTCAGTGTTGAGATTGTAGGAAATTGTTA
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	CAATATTAATATCTTCAATCCAATTGGACT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	TTGCAATCGGAAAAGCAGCAGGTATTCCAG
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC

>NZ_CP021487|1|1|438413-439040|CRT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	TAATTTAGAGCTGTATTTGAATAAGCACCCT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	TAGCATGTCGGCACTCGTCCCGCCTACCCGT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CGTCTGGGGTTAAGATTGCGACTGTGTCGCA
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CATAACCTACCTCCGATACGTGTTAATCATT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CGTTCCCACATGAGTGATTACTGGAATGCGC
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CGTTCAGTGTTGAGATTGTAGGAAATTGTTA
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CCAATATTAATATCTTCAATCCAATTGGACT
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CTTGCAATCGGAAAAGCAGCAGGTATTCCAG
GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	CACGATTTACCGTTTTAGGAATGATTTAGA
TGTTTCAGAGAATGTTAAATCAATAAGGTTGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021487.1\|WP_005916127.1\|446722_448042_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|226583
NZ_CP021487.1\|WP_036685629.1\|424581_426135_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP021487.1\|WP_002829950.1\|449544_451908_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP021487.1\|WP_008842013.1\|422054_422600_+\|DNA-binding-ferritin-like-protein	unknown	unknown	gnl\|CDD\|153102
NZ_CP021487.1\|WP_024862575.1\|431453_432029_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371000
NZ_CP021487.1\|WP_024862570.1\|439689_440337_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP021487.1\|WP_002831110.1\|444809_445985_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_CP021487.1\|WP_065124499.1\|428691_431226_+\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341064
NZ_CP021487.1\|WP_002829951.1\|448841_449396_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NZ_CP021487.1\|WP_065124502.1\|437712_438384_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP021487.1\|WP_065124497.1\|426418_427063_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP021487.1\|WP_002829962.1\|440526_440811_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP021487.1\|WP_002829957.1\|442755_444588_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|372624
NZ_CP021487.1\|WP_002831111.1\|446052_446691_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP021487.1\|WP_002829959.1\|440833_442456_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP021487.1\|WP_065124498.1\|427255_428665_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP021487.1\|WP_005916130.1\|448326_448713_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP021487.1\|WP_002831107.1\|437410_437716_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP021487.1\|WP_065124501.1\|436527_437433_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP021487.1\|WP_065124496.1\|422586_424509_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319774

Protein	Function_ID	Function_description	E-value
NZ_CP021487.1\|WP_005916127.1\|446722_448042_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	4.06104e-173
NZ_CP021487.1\|WP_036685629.1\|424581_426135_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP021487.1\|WP_002829950.1\|449544_451908_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP021487.1\|WP_008842013.1\|422054_422600_+\|DNA-binding-ferritin-like-protein	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	4.64878e-20
NZ_CP021487.1\|WP_024862575.1\|431453_432029_-\|hypothetical-protein	gnl\|CDD\|371000	pfam10351, Apt1, Golgi-body localization protein domain. This is the C-terminus of a family of proteins conserved from plants to humans. The plant members are localized to the Golgi proteins and appear to regulate membrane trafficking, as they are required for rapid vesicle accumulation at the tip of the pollen tube. The C-terminus probably contains the Golgi localization signal and it is well-conserved.	0.000576774
NZ_CP021487.1\|WP_024862570.1\|439689_440337_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	5.61643e-10
NZ_CP021487.1\|WP_002831110.1\|444809_445985_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	4.92655e-87
NZ_CP021487.1\|WP_065124499.1\|428691_431226_+\|M1-family-metallopeptidase	gnl\|CDD\|341064	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1). This M1 peptidase family includes eukaryotic and bacterial members: the catalytic domains of aminopeptidase N (APN), aminopeptidase Q (APQ, laeverin), endoplasmic reticulum aminopeptidase 1 (ERAP1) as well as tricorn interacting factor F3. Aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease, preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is considered a marker of differentiation since it is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. ERAP1, also known as endoplasmic reticulum aminopeptidase associated with antigen processing (ERAAP), adipocyte derived leucine aminopeptidase (A-LAP), or aminopeptidase regulating tumor necrosis factor receptor I (THFRI) shedding (ARTS-1), associates with the closely related ER aminopeptidase ERAP2, for the final trimming of peptides within the ER for presentation by MHC class I molecules. ERAP1 is associated with ankylosing spondylitis (AS), an inflammatory arthritis that predominantly affects the spine. ERAP1 also aids in the shedding of membrane-bound cytokine receptors. The tricorn interacting factor F3, together with factors F1 and F2, degrades the tricorn protease products, producing free amino acids, thus completing the proteasomal degradation pathway. F3 is homologous to F2, but not F1, and shows a strong preference for glutamate in the P1' position. APQ, also known as laeverin, is specifically expressed in human embryo-derived extravillous trophoblasts (EVTs) that invade the uterus during early placentation. It cleaves the N-terminal amino acid of various peptides such as angiotensin III, endokinin C, and kisspeptin-10, all expressed in the placenta in large quantities. APN is a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs are also putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	0
NZ_CP021487.1\|WP_002829951.1\|448841_449396_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	2.37568e-37
NZ_CP021487.1\|WP_065124502.1\|437712_438384_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.1065e-101
NZ_CP021487.1\|WP_065124497.1\|426418_427063_+\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.0776e-43
NZ_CP021487.1\|WP_002829962.1\|440526_440811_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.42388e-45
NZ_CP021487.1\|WP_002829957.1\|442755_444588_+\|APC-family-permease	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	4.05738e-28
NZ_CP021487.1\|WP_002831111.1\|446052_446691_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	4.15849e-58
NZ_CP021487.1\|WP_002829959.1\|440833_442456_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP021487.1\|WP_065124498.1\|427255_428665_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.10183e-48
NZ_CP021487.1\|WP_005916130.1\|448326_448713_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	4.57109e-22
NZ_CP021487.1\|WP_002831107.1\|437410_437716_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.63081e-29
NZ_CP021487.1\|WP_065124501.1\|436527_437433_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.10074e-96
NZ_CP021487.1\|WP_065124496.1\|422586_424509_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319774	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase. Heavy metal-transporting ATPases (Type IB ATPases) transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. These ATPases include mammalian copper-transporting ATPases, ATP7A and ATP7B, Bacillus subtilis CadA which transports cadmium, zinc and cobalt out of the cell, Bacillus subtilis ZosA/PfeT which transports copper, and perhaps also zinc and ferrous iron, Archaeoglobus fulgidus CopA and CopB, Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase, and Escherichia coli ZntA which is selective for Pb(2+), Zn(2+), and Cd(2+). The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This family belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP021487.1|WP_065124502.1|437712_438384_+|type-II-A-CRISPR-associated-protein-Csn2
MKLTYRTHEPVEIKPQAITVLGTNNSTVYTDLVNGMQGRNELILAFDENYKELEISKVFDWIGDVGTQDLVIQKYLTKIERVFAEGLVDEQRNQIHDQVNQLFNTVAEQLFMLDLPISVNYDFDLKKLLKYCGVHFDPLSVGNPYGIIEAILKTHEECAINSCVVLTNVAHYLTATKIEELTQLVSQTNQALLLIEFTEIGNQEAYGNSEFYYIDNDFVDWHQ
>NZ_CP021487.1|WP_002831107.1|437410_437716_+|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVETAVQRKQYRQFRKALINEGFLMIQYSVYVRVCVNKKSATFMENRIKTYLPENGTIQALTLTEKQYNDMHFLVGERVKDVRNTSDRTVIL
>NZ_CP021487.1|WP_065124501.1|436527_437433_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSVIITQHAKLSYSAHAMIVQTNDGINQIPVDDVSLLLISTTQAVITTALISELSKKNVKIVFTDEAREPISEIYGYYPANRTAQLLREQVNWDLQLQQILWTKLVANKIINRINVLNLLDHSTDELVTELEKLELNDLTNREAVVAHKYFPLLFESGFTRRGGSVINAALNYGYSILLSAVNQEIVANGYVTYLGIHHDSEENQFNLASDLMEPFRPVVDCWVANQKFNQLTPDIKYGLVELLSLELKYNGKKTILRNAITDHVRNCLKYLAGKANSFTIEMELSDEVPNNAINDNV
>NZ_CP021487.1|WP_024862575.1|431453_432029_-|hypothetical-protein
MKKIASIAILAVLPLTLASCGNHSTSNSDTSSNSSKTEKVAKSSSKSSASKEAKSSSDDKATSSSASANSSKDSTNSSSSSNSASSSTSSATDSSSSADNQMSRSDLTKAEKKNGNRPLADEKIQNEQAAVALLTEKYGNQNWKVAFSSIGKSSPIYFHITSPKHGSYYVYANGDVQSADGDLSNHQIVNK
>NZ_CP021487.1|WP_065124499.1|428691_431226_+|M1-family-metallopeptidase
MANIERFYTKFHPTNYQIKLAISRETKEIKGTTTITGEALSSQIDIHQKDLQIEELRVDGTAGDFTVDQAAEAIHVKLPHTGTVTLEIKYTTKLTDTMMGIYPSYYEVNGETKQLVGTQFETTFARQAFPCVDEPEAKATFDLAIKFDEHPGEVVLSNMPETKVEDGYHYFARTVKMSTYLIAFAFGDLQSKQTKTKSGVQVGVFATKAHQPQELDFALDIAKRAIEFYEDFYQTPYPLPHSWQLALPDFSAGAMENWGLVTYREAYLLLDPKNTTLRTKQVVATVIAHELAHQWFGDLVTMQWWDDLWLNESFANMMEYVAVDALEPDWQIWELFQNSEAGAALQRDATDGVQSVHVQVNDPAEIDALFDGAIVYAKGARMLVMVRALIGDDALRQGLQKYFASHQYGNATGNDLWQALGEAANMPIGDIMHTWLDQPGYPVVTAQVENGDLVLEQQQFFIGEGQAQQRQWQIPLNGNYAEVPALLQTKTLNLGNYQDLRDRNQQPFRLNVGNSSHFIVRYDQRLLDDILADWEQLSAIDQLQLLQDLRLLAEGKQISYAEIVPLLPRFAKTDSALVAEMLYRVANDLKKFVAPQSSAEKQLKKFFGELSQAPAQRLGWQAAAGETNDDQLMRPMVLKAALYAENPAVTAQAHQLFEENEAQLPKLPAAIRSLVIRNEVEHFGSPELFARLLKEYQRTSDASYKSDLCQALTATPSLPLIQQLVQQFENAQVIKPQDLRAWFRGVLANPQGQGPAWNWIRDEWQWLEDTVGGDMEFATYITVIAGIFQTPTRLAEFKAFFEPKLATPGLTREITMDIKVIETRVALIETERDAVQAAVAQAIK
>NZ_CP021487.1|WP_065124498.1|427255_428665_+|MFS-transporter
METQNTRHTNPMIVVAVVALMSFMGILTETSMNVTFPALMKEFHVPLNTVQWVTAGYLLMAALVMLTSAYMKRRFTNRQLFTAAAILFSSGDLICGLATNFWVLLAGRLIQAGCVGLCTPLMVNIILDVVPQHKLGTYIGMANLIILIAPALGPTFGGAVVAFNSWRMIFWSTLPVALVLMLLGMKVIKQYAPTDQHYAFDWTRFLLLGMALVSLIVGLNALGEMQLGTFVGLLIVSIGLTILFVKRSHTATKALFSLQVFKQPAFLYSFLPYIMLQFANVGINFLLPNYVQDVFQATSLVGGLILLPGSLFNGFGQPLYGWLLDRFGGKVPLYTGDILFTLALVGLMCWGPQLGVVGITIAYLIFAIGRSMAFGNSVAYGLKHIDKEFQNDANALYNTGQQVTGAIGTTVLALLMGSVKRPGYTHAQNVSAGSQLAFILLVIFGCVIFVFFHHLVNLKNLPEDKGVDL
>NZ_CP021487.1|WP_065124497.1|426418_427063_+|SDR-family-oxidoreductase
MAKIFIAGGSGRVATALIKNLVADGNEVVAGARHPENVVEMDHVNAVKLDLHDGVDAIADLMKGSDAVYFTAGSRGADLLQTDAMGAVKTMQAAEKLGIKRYVMLSSLYTLESERKWHEGGLADLLDYTTAKFFADNYLVHDTDLDYTIVQPTSLTEEAGTGQIYIGKELPQKTNPIPDVAKVLADVLKHPNTVKKVFMMSSGSQAIDQALANV
>NZ_CP021487.1|WP_036685629.1|424581_426135_+|glutamine-hydrolyzing-GMP-synthase
MANTDLSNFDKIIVLDFGSQYNQLITRRIREFGVYSELLSHKITAEEIKQINPKGIIFSGGPNSVYDDDAFRVDPEIYQLGIPILGICYGMQLMAYNLGGRVESADNREYGHADINVTDDQAALFKGLPATQTVWMSHGDLVREVPAGFKTVATSANCPIASMADDERKFYGVQFHAEVRNTQYGNDILRHFAFDVCQAQANWSMNDFIDMQVEKIREEVGDRKVLLGLSGGVDSSVVGVLLNKAIGDQLVCIFVDHGLLRKGEAKQVMDSLEGKFGLNIIKVDAQDRFLSKLAGVTDPEQKRKIIGNEFIEVFNDEAQKLKGIDFLAQGTLYTDVIESGTDTAQTIKSHHNVGGLPEDMHFELIEPLRTLFKDEARDLGEKLGMPEDLVWRQPFPGPGLGIRVLGEITEDKLQIVRDSDLILREEIKNAGLDRDIWQYFTVLPGIRSVGVMGDGRTYDYTVGIRAVNSIDGMTADFARIPWDVLQKISVRIVNEVDHVNRVVYDITSKPPATVEWE
>NZ_CP021487.1|WP_065124496.1|422586_424509_+|heavy-metal-translocating-P-type-ATPase
MMMIKMQRWFTRFANPLLGVAALLTATGWLLQHGGGSPEVAGMAYGIATLVAGMPILLKAIAALRARVASIELLVSIAVLGALIIGELEEAAMVTFLFGLGNYLERRTLKQTHRALANLTEMQPTQALLVSEGQTRTVAIDDVEVGDQLLVRIGDQVPVDGRVVTGTAAVNEAAITGEARVVNKTPTDQVYTGTIVENGQMVVEAQKVGEETTFGKIIELVEEAQDNQAPVSRFIDQFARFYTPLVLVLALLTQLVTQDFRLAITILVLACPGALVIGTPVSNVAGIGRGAQSGILIKGGQVIDQLAKVRTILMDKTGTITTGKPTVQSFYQYSQQDWLAVAAQLEKQTNHPLAAAVVEFYEQRTGQPVQNHDIAITTVKGIGVTATWHGHQVKLGSPRILEPSAQKLSNKQTADLQKLRENGQSVILMIVDGALVLAMGLSDQVRPGVASALKRLRQTGVTNQWMVTGDQLNVAQSVAHIVGITQVKAGQLPNEKAQFLKELQASGQPVLFVGDGINDSPAIAQAAVGIAMGSGTDVAIETSDVVLINPDFKNVVFARQIAQTTLRNMMENVGIAVGTVALLMLGVSLGWVNMASGMFFHEVSILVVIFNAMRLLKLKRPAWENFSTKTGGESPSSETI
>NZ_CP021487.1|WP_008842013.1|422054_422600_+|DNA-binding-ferritin-like-protein
MAKSIEERYLAEQKQAEIDHHQPTAGAMADHVLANLRVLTNKLVQAAWYVKGPSYFADREYLLQLQATLNHDFVQLGDQLRAVGEKPASVTAEFSEYSMLTEDPRIKYYSTEAILAGLVADCQTSLMFIQRAIALANQESKFPLASYLIELNGQFDRASQKLQARLGKEPREGLEEDDDDD
>NZ_CP021487.1|WP_024862570.1|439689_440337_-|CPBP-family-intramembrane-metalloprotease
MKISKSSLLTLITYLAIFLLPSVINLFVRLGASFIWVETIDYLVGAALLVVINLKNSEINQIETRRIPFFRAIAWGIIGTALVIVLQFVVSYVTFILGQNPASANTATLVTLAKINPFFVLAITVGAPIMEELVFRKVLFGNLSTLFGMRSNLGLTIMAIISSLAFAFMHNDSHIFLYAAIGLLFCWLYHKTGRIQTSMIAHILMNGLVVLPLVM
>NZ_CP021487.1|WP_002829962.1|440526_440811_+|co-chaperone-GroES
MLKPLGDRVILEAKDEEEQTVGGIVLASNAKEKSQTGKVVAVGNGRVLDDGKTLPMNVKVGDTVVYDKYAGTEVTYEDQKYLVVHEKDLVAVVE
>NZ_CP021487.1|WP_002829959.1|440833_442456_+|chaperonin-GroEL
MAKEIKFSEDARTKMLKGVDKLADTVKSTIGPKGRNVVLEQSYGSPTITNDGVTIAKSIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIEKATEKAVAALHNMSHEVKTKDDIAQIASISSANPEVGKLIADAMEKVGNDGVITIEESRGVDTTLDVVEGMQFDRGYMSQYMVTDNDKMEANLDNPYILITDKKIANIQDILPLLQSVVEQSRSLLIIADDITGEALPTLVLNKMRGTFNVVAVKAPGFGDRRKEQLEDIAILTGGTVITDDLGLNLKDVTIEQLGQANKVTVTKDDTTIVEGSGSQEQIAERVAMIKQQISETTSDFDKEKLQERLAKLAGGVAVIRVGAATETELKEKKYRIEDALNATRAAVEEGFVPGGGTALVNVIASLEDLDAEGDELTGINIVRRALEEPVRQIAENAGEEGSVIVTKLKTQKDGVGYNAATDEWVDMIEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADLPEEKPAAPAAPNPGMGGMM
>NZ_CP021487.1|WP_002829957.1|442755_444588_+|APC-family-permease
MFSYLKRILIGKPLKTLDESGQALTKFKALALLSSDALSSIAYGTEEILSVLIVLSAAATWYSIPIAAIVLVLLFAITVSYRQIIKAYPSGGGAYVVASKNWGTSAGLVAGGSLLVDYMLTVAVSVTSGTEAITSAIPALQKYHVAIAVLIVLGIMALNLRGLRESASFLTIPVYLFVVVISIMIIVGLYNIVTGQVTYHAAAAIGSTVPGMTFVLFMRALSSGSSSLTGVEAISNAVPNFKKPRRKNAAATLAIMSLILASFFAGITFLAYYSGITPMSSQTVLSQIGVTVFGHGIFYYILQLSTALILAVAANTGFSAFPMLAYNLAKDKFMPHAYMDRGDRLGYSNGIISLAAGAIVLILIFGGQTGLLIPLYAIGVFVPFTLSQSGMIVHWKREGGAHWWINASANLLGALLSAVLVVCLLFLHFSNVWPYFVVMPLLLRMFYKIRKHYDEVADQLRVVEKGKVNLHDYDGSTVIVLVSNVTQVTSGAINYARSIGDYVIAMHVSFDANPEKEHKTAMEFKAEYPDVRFIDIHSSYRSITNPTLRFCDVIAKRAAERNYTTTVLVPQFVPRKPWQNILHNQTGLRLRAALNSRENIIVSTYNYHLK
>NZ_CP021487.1|WP_002831110.1|444809_445985_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MRFEIVVSLFATMIISAILTPFVRRIAFKIGAVDKPNARRVNKVPMPTMGGLAIFLAFNFSLFFLLRNQIPNPQFYGIFFGECIIMLTGIIDDIFELKPSQKMIGILLAALAVYWFAEVQMTTLTLPFIGIVHLGWFSLPITLIWIAAITNAINLLDGLDGLATGVTIIALFTTGFTGLFFLPSTNIYIVIMIFTLVAAEVGFLPYNFFPARIYLGDTGALFIGFMIAVFSLSGLKNATFISVLIPVMILGVPLTDTIYAILRRLLNKQSIAHADKRHLHHRLMQMGLTHRQTVLVIYGISMIFSFIALLYPLSTLWGSVLLTIGILVGIELFVEAIGLVGENRTPMLSWIKRLVRTTTSKTASNEFKEEDTLKDRVRSRSERHQQKKHHD
>NZ_CP021487.1|WP_002831111.1|446052_446691_-|YigZ-family-protein
MKLILSVKEPVTTEQDIKKSRFISRIIPVQTEEEAQTKLQDIREIEAKATHNCFAYVLGDHQDIQRASDDGEPSGTAGAPILEVLKRENLTNVLVVVTRYFGGIKLGAGGLIRAYGSSTSLAVQSATLMESVDQELLAITIDYQNNDQLTYYLEQHQITQVNHEYTTQVITTVAVDQDQVADLKAELTGLFSGNVSFKDGGQQRVQVPYQPQ
>NZ_CP021487.1|WP_005916127.1|446722_448042_+|DEAD/DEAH-box-helicase
MEAKVKEKYYGRLVPVNQAEATDPTVNYFPAVIVKKRRIQCQRCGATTKLKEGSLPNQQYYCRHCINLGRMSTLVKLGNLPEPNHFPVGRSYLKWQGQLTPDQQRCANEIISSIKQQTDRLLWAVTGAGKTEMLFPGINFALKKALRVAIASPRIDVVLELHPRIQAAFPEIAIALLHGRTSTPYTYTQLVLCTTHQLLRFYHAFDVLIIDEVDSFPFAMNPALHYAAHQARKECGTTIYLTATPDGQLLKDSRSHRLPTSYLTRRFHGHPLPEIKMVSGCNWQKLIHRRRLPERLRQFLMAQAKAQRQFLVFVPRIDQLSSVLQAIQKQFPELDLATVYAEDPDRIEKVSAMREGQLTGLITTTILERGVTFPGIDVAVLGADDEIFSMAALVQIAGRVGRSPKRPTGTVLFIGQMLTRRIKRAQRQIKFMNQQAFKQ
>NZ_CP021487.1|WP_005916130.1|448326_448713_+|ComF-family-protein
MRKAFCNDFINFIQSLVKEDEHLVPIPVDQGTIKVRGFNQVAGLIEGLEFEPVLISQRSEQARHQFQRSRRERLQRENPFRVVEPNKVAGAKWVIIDDIYTTGVTVRQAGRELSKHGARQVRSITLCR
>NZ_CP021487.1|WP_002829951.1|448841_449396_+|ribosome-associated-translation-inhibitor-RaiA
MLDFNVRGENIEVTESIRDYVEKRIGKIEKYFDQGANPKAHVNLKVYQDRTAKVEVTIPLPYLVLRAEETSPDLYASVDLVTDKLERQIRKYKTKINRKSRETGYKGVEIPQEDAREDEEEASEFDIVRTKQVSLKPMGAEEAILQMDMLGHNFFIYEDADTGSVDIVYRRHDGRYGLIESANE
>NZ_CP021487.1|WP_002829950.1|449544_451908_+|preprotein-translocase-subunit-SecA
MANILKKWVESDAREIKRLGKKADKIDALKDEMAQLSDEELKAKTPEFKERLKNGETLDDILIEAFAVAREGAKRVLGLFPFRVQLIGGMVLHGGNIAEMKTGEGKTLTATLPVYLNALGGEGVHVVTVNEYLAERDSTEMGELYKWLGLTVGVNTAEMSPDEKREAYNCDITYSTNSEIGFDYLRDNMVVYKEDMVQRPLNFALIDEVDSVLIDEARTPLIISGQTEPSVTLYQRADRFVKTLTDGDYTIDWESKSISLTENGIRRGEKYFNTDNLYDVENSALNHHIDQALRANYIMTKDKDYVVSDDGEVLIVDSFTGRVMEGRRFSDGLHQAIEAKEHVEIQDGSKTMANITYQNLFRMYKKLSGMTGTAQTEAEEFREIYNMEVVSVPTNRPVVRDDRPDLLYPTLESKFKAVVKEIKKLHTKGQPVLVGTVAVETSEYLSRLLDRERIPHVVLNAKNHAREAEIVANAGQKGAVTIATNMAGRGTDIKLGPGVVELGGLAVIGTERHESRRIDNQLRGRSGRQGDVGMSQFYLSLEDDLMIRFGSERIKDLLSRMKVADEDAVIQSRLISRQVESAQKRVEGNNYDARKNVLQYDDVMRAQREVIYAERQQVIMEEHSLKDVLMPMVYRTIDRVVDAHTAKTKKSYDLDTIVEFARTTLVNENDINIEDLEGKSANEIKDYLKQLADQMYKQKEDALYAPEQILEFEKVVILRVVDQHWTDHIDAMDQLRQSVGLRGYGQLNPLVEYQQEGYRMFNEMVTDIEYETTRLFMKSEIRQNLER

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Crispr_ID: NZ_CP021487_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021487_2

624068-624171

Orphan

Consensus_repeat	Method
TTAGCTCAGTTGGGAGAGCATCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021487_2

>merge|NZ_CP021487|2|624068-624171|CRISPRCasFinder
TTAGCTCAGTTGGGAGAGCATCTGCCTTACAAGCAGGAGGTCACAGGTTCGAGCCCTGTATCCTCCATTATCTTGAGCCGTTAGCTCAGTTGGTAGAGCATCTG

>NZ_CP021487|2|2|624068-624171|CRISPRCasFinder
TTAGCTCAGTTGGGAGAGCATCTG	CCTTACAAGCAGGAGGTCACAGGTTCGAGCCCTGTATCCTCCATTATCTTGAGCCG
TTAGCTCAGTTGGTAGAGCATCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021487.1\|WP_065124322.1\|631503_633921_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP021487.1\|WP_005919135.1\|635869_636589_+\|16S-rRNA-pseudouridine(516)-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP021487.1\|WP_008842200.1\|611954_612143_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021487.1\|WP_065124319.1\|637651_638113_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP021487.1\|WP_065124320.1\|636695_637526_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NZ_CP021487.1\|WP_024862477.1\|616425_617442_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP021487.1\|WP_065124321.1\|634176_635859_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP021487.1\|WP_002829779.1\|612285_612552_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
NZ_CP021487.1\|WP_008842202.1\|614348_615122_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP021487.1\|WP_065124323.1\|630462_631098_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP021487.1\|WP_065124600.1\|608330_609308_+\|GMP-reductase	unknown	unknown	gnl\|CDD\|235479
NZ_CP021487.1\|WP_008842201.1\|612551_614276_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP021487.1\|WP_065124598.1\|617486_618491_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP021487.1\|WP_065124324.1\|626991_628182_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP021487.1\|WP_008842208.1\|629906_630470_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377744
NZ_CP021487.1\|WP_002829774.1\|615207_616395_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340844
NZ_CP021487.1\|WP_005919149.1\|626088_626820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021487.1\|WP_002829785.1\|607458_607713_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021487.1\|WP_002830670.1\|628357_629827_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
NZ_CP021487.1\|WP_081276402.1\|609531_611739_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616

Protein	Function_ID	Function_description	E-value
NZ_CP021487.1\|WP_065124322.1\|631503_633921_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP021487.1\|WP_005919135.1\|635869_636589_+\|16S-rRNA-pseudouridine(516)-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	1.20075e-86
NZ_CP021487.1\|WP_065124319.1\|637651_638113_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.17753e-25
NZ_CP021487.1\|WP_065124320.1\|636695_637526_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	5.67848e-75
NZ_CP021487.1\|WP_002830670.1\|628357_629827_+\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.2669e-65
NZ_CP021487.1\|WP_002829779.1\|612285_612552_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	7.13708e-55
NZ_CP021487.1\|WP_024862477.1\|616425_617442_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	3.40373e-35
NZ_CP021487.1\|WP_065124323.1\|630462_631098_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	4.69741e-48
NZ_CP021487.1\|WP_065124600.1\|608330_609308_+\|GMP-reductase	gnl\|CDD\|235479	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional.	0
NZ_CP021487.1\|WP_008842201.1\|612551_614276_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP021487.1\|WP_065124598.1\|617486_618491_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.81535e-32
NZ_CP021487.1\|WP_065124324.1\|626991_628182_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP021487.1\|WP_008842208.1\|629906_630470_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	1.83868e-70
NZ_CP021487.1\|WP_002829774.1\|615207_616395_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340844	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (EC 2.4.1.337, UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.	8.27925e-139
NZ_CP021487.1\|WP_065124321.1\|634176_635859_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.63087e-140
NZ_CP021487.1\|WP_008842202.1\|614348_615122_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.20097e-30
NZ_CP021487.1\|WP_081276402.1\|609531_611739_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0

>NZ_CP021487.1|WP_065124598.1|617486_618491_+|flippase-like-domain-containing-protein
MILAGLVIFGYSLRGVNLHQVSHDILNLNVGWLLVALLCIILYLGFEAVATKVLVESNGDRLSWKDAIRIPLIEQLFNGLTPFSSGGQPAQLVALMQSGIEGGRASSVLLMKFVVFQSMVVLNFIFSLLIGFQYLEDKIKFLSWFVLFGFLIHLAVIIGLLMIMYWHNFTKKMFDLIFIPIKRFTKPERYLRWKTSIDAKVDTFYLESVRMKSQWRLLAKVALLTFLQLLFYYLIPYFILLALGKIHVHLIMVTCLHVLIFMVISLFPIPGGAGGAEYGFSVIFAQFVGNSSKLVLAMIIWRLLTYYFGMFAGMFATVIKPNRINRIAPKKTSE
>NZ_CP021487.1|WP_024862477.1|616425_617442_+|glycosyltransferase-family-4-protein
MPIKVNMFSSASKVKGQGVGSAYEELIRLLKTHFPKEIDLSINRYTQADISHYHTIDPQFFASTFTKKRGVKVGYVHFLPETIEGSLKIPQPFRWLFYKYIIAFYKRMDQIVVVNPTFIDQLVKYGIKREIITYIPNFVRKDEFYQYDAEQRRQVRERLGVQNRFTILGIGQVQERKGVKDFIKLAQQHPEMYFIWAGGFSFGRLTDGYADLKKVVDNPPANLKFTGIVDRNKLVEYYNAADLFLLPSYNELFPMSVLEAFSCGTPVMLRDLDLYHSIIKGYYIAADNYAEMDQKLSALVKNPAQLRDYQQRADQASAEYSEDHLAEIWLKYYSSLLK
>NZ_CP021487.1|WP_002829774.1|615207_616395_+|glycosyltransferase-family-4-protein
MNIGLFTDTYFPQVSGVATSIKTLRDQLEKQGHQVYIFTTTDPKVDTNVYERNVFRFTSIPFVSFTDRRIAISGFIRATQIAKELNLDIVHTQTEFSLGWMGKFVAKALKIPVIHTYHTMYEDYLHYVANGKLLKPYHVKQMTRAFCYHIDGIVAPSERVQRTIQRYGIQVPTRIIPTGVNLEQYQKDSNPQQCREALGYDAKTPVLLSLSRLAYEKNIQEVIDCFPAILKEVPDAQLLIVGDGPARTSLENQVHDLGLEKHVKFTGEINNDQVYRYYQAADLFVSASDSESQGLTYIEAMASHLKVVAKSGPYTDELLDDPSLGKVFDTEAQLVQAIKRYIEHPDEFNDPRPREKKLYEISADYFGKRIVDYYNSAISAHADLEHGSKKESELE
>NZ_CP021487.1|WP_008842202.1|614348_615122_+|alpha/beta-hydrolase
MEFILKTGETIYYEDQGEGIPILFLTGFGGNTEIWSGQVNFFLQHGYRVIRLDYLNHGRSDRVDYDLKIGDLADEVLQLVDALEIKEPIGIGNSMGAAVLWNILSIRGWDFVSKAIFVDQSPRMMNDDQWHYGFKNLSEANFEQLMSEPILRPAYRRIEGYVYKNSKAIDSKYPFSQPKNRSLVKGHARKDWRPVLRAATKPVLFILGEKSPFFNPQMGDALKQLNSRIQVEVMPNVGHIPMAEEPAQFNQLVLRFL
>NZ_CP021487.1|WP_008842201.1|612551_614276_+|phosphoenolpyruvate--protein-phosphotransferase
MTGTLKGIAASDGIAIAKAYLMVDPDLSFEKKTITDVDAEINRLHDALEQSKKELTLIKAKAAENLGAEEAEVFEAHLTILSDPELIGNIEDKIKNDTINAEEATKEVTDNFIAMFEAMTDNAYMQERAADIRDVTKRLMSHLLGVELPNPALIDSEVIIVAHDLTPSDTAQLDRRYVKGFITDIGGRTSHSAIMSRTLEIPAVVGSEKATTSVKQGDMMIVDGLTGDALINPSDDEIKEYEQKSADFKAQKAEWEKLKNERTVSKDGVHFDLAANVGTPDDLQGVLDNGGEAVGLFRSEFLYMNASELPSEDQQFEAYKKVVEGMNGKQVVVRTMDIGGDKDLPYLPLPEEMNPFLGYRAIRISLDRTDLFRTQLRALLRASAYGKLAIMFPMIATVAEFKKARAIYDDERQKMIDAGTKVGEIQVGMMMEIPAAAMIADKLAKYVDFFSIGTNDLIQYSFAADRGNEKVSYLYQPYNPSLLRLIKQTIDASHAEGKWTGMCGEMAGDQIAVPILMGLGLDEFSMSATSILKTRSLMKKLSTDDMKKLAEKAITEAETNEDVIKLVEETVNNK
>NZ_CP021487.1|WP_002829779.1|612285_612552_+|phosphocarrier-protein-HPr
MEKRDFHVIAETGIHARPATLLVQAASKFNSDIQLTYKDKSVNLKSIMGVMSLGVGQGADVTISADGDDEADAIAALEDTMKKEGLSE
>NZ_CP021487.1|WP_008842200.1|611954_612143_+|hypothetical-protein
MRDYLKLLNDLKDGVLDELTITAEEFQDFQPVFMDFPERKQLIGEAQRGGTITYRYENNKKQ
>NZ_CP021487.1|WP_081276402.1|609531_611739_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MLCQNCHKNEATIHLYTNVNGRRTEVNLCQNCYQLLKNQQLNNNNGNGGARMAQDPFGFGNLDDIFRAMQGGNVSRPEDMYGQQVPPTQAGRGGGNNPNGGNGSSLLGQYGLNLTDLAKQGKIDPVIGRDKEIERVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQRIVEGSVPQKLLNKQIIRLDVVSLVQGTGIRGQFEQRMQELMKEVQNNPDLIVFIDEIHEIVGAGNAEGGMDAGNVLKPALARGDFQLVGATTLKEFRDIEKDAALARRLQPVQVDEPSEEEAIKILKGIQKKYEDYHHVHYTDDAIAAAVKLSKRYIQDRYLPDKAIDLLDEAGSKKNLTINVADPETIQKKIDEAEAEKKKALESEDYEKAAYYRDQVSKLEKNKDGATNKEDEPTITAEDMEKIIESKTDIPVGDLQKQEQEQLQNLASNLKAHVIGQDEAVDKISRAIRRNRIGLNGTGRPIGSFLFVGPTGVGKTELAKQLADQLFGSKDAMIRFDMSEYMEPHSISKLIGSPPGYVGYEEAGQLTEQVRRHPYSLILLDEVEKAHPDVMHMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGSGDVEADVGFGAAMQGKTHSVLDKLGNYFKPEFLNRFDDIVEFHALTKDNLMQIVDLMIADVNKMLATQGLHVNVTKPVEERLVELGYDPKMGARPLRRVIQEQIEDRIADFYLDHPSEKQLIARIKDDKIEVAPDDKK
>NZ_CP021487.1|WP_065124600.1|608330_609308_+|GMP-reductase
MKVFDYEDIQLIPAKCVVRSRSECDPTVELGKHTFKLPVVPANMQTIINEEIAEKLAADGYFYIMHRFEPETRLAFVKKMKAKGLISSISVGVKDGEYDFIDELAAKNLVPDYITIDVAHGHAQTVIDMIHYIKEKLPESFVIAGNVGTPEGVRELESAGADATKIGIGPGKVCITKLKTGFGTGGWQLSALRWCAKVARKPLIADGGIRNHGDIAKSIRFGATMVMIGSLFAGHIESPGETKVADGVTYKEYFGSASQYQKGEAKNVEGKKIWIHQRGHLADTLKAMREDLQSAISYAGGRDLESIRKVDYVIVKNSIFNGDIL
>NZ_CP021487.1|WP_002829785.1|607458_607713_+|hypothetical-protein
MSKNLKIDLNTDELIGSREASLMWGKQKDYVRTIYNKYPERFPTGTIRKFGKQLIVTREGMESVTGIKYEDLDKKNIEKAKLPR
>NZ_CP021487.1|WP_005919149.1|626088_626820_-|hypothetical-protein
MNKIKIPKINYHVDRKSYLPAILAVILTSTIWYFSGHFSSEPFKHNLTVQIIFFLASFMANFITFDQLTNKTNLRLIAPLAVIPVAFFIILLVSKERYVSLLGLLTLVPFVSVFLPFQGKNGVGLISFAFSISVLSPIAFFYIRNAFVSSMFLKTCLLLCLVFLMILFSVFVAHPEQFIYLEIGLLVVITIFGFVLFKQWSAVLYPMIGILGWYLPRVKLPRNFILLVLIILICVTFLFTAGH
>NZ_CP021487.1|WP_065124324.1|626991_628182_+|methionine-adenosyltransferase
MSERHLFTSESVSEGHPDKIADQISDAILDELLKNDPDARVACETTVTTGLVVVVGEISTTAYIDIQKVVRKTIKDIGYVGGEYGFDGENCAVIVAIDEQSPDIAQGVDDSLETREGHEDRLNRIGAGDQGLMFGYATDETKELMPLPIMLSHHLMQRIAKLRKEQVISYLRPDAKAEVTVEYDDNDQPVRVDTVVLSTQHDPDVTLEQIRKDVIEKIIKEVIPAELLDEKTNFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGAAHHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGLAKKAEVQIAYAIGVAEPVSVMVDTFGTGKVSEEALTKAVRQIFDLRPAGIIEMLDLKRPIYKQTAAYGHFGRTDVDLPWEKTDKVAELKAFFQK
>NZ_CP021487.1|WP_002830670.1|628357_629827_+|MFS-transporter
MKKKQTNVALVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVNLMNWVISIFLLTNAIFTPIYGKLSDIFGRKRVFIIGIIIFLIGSMLSGLAHSMTTLIIWRALQGIGAGSIMPVSNTIIADIYSLEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNLSWHWIFFINVPIGIITIILIQLYLKEEVSVHRKKIDYWGSVWLMLSLLGLMYGFQLLGESTASKLILGLSFIIFVVAGALFIRQERRAEDPIIFLDLFNDRTFVIQNVATMLVSGLLIGFEVYLPTWTQGILGLPASLAGFAVTPSSVLWIFGSFLAGKMLVKLKANQILRISLTILAIGSFLLAVIPASTPFVAFFFIAAILGVGFGITITSTLVISQQLVSKDRIGVATSFNTLAKTLGQTIMMSVFGIIMNGTINMGIAHHPRINMTMMNQVINPQTAKQLPADLLPTLRDILYSALHNIYICGFILIIVAIVINAFSRPRTQKNK
>NZ_CP021487.1|WP_008842208.1|629906_630470_-|methyltransferase-domain-containing-protein
MLDNAMQYSHRLLAEVVQPGDHVVDATMGNGHDTLFLANLVQSQGRVFSFDIQAAALSATEARLEKQLPDHQHVQLIQDSHDQLAQYVDTPISGAVFNLGYLPGGNKQIITHSASTIAAVQQCLQLLKVGGRVVLVCYYGHPGGAAELAKLLEFTANLDQHQFTCLRYEFINQVHQPPILLAIERRK
>NZ_CP021487.1|WP_065124323.1|630462_631098_-|phosphatase-PAP2-family-protein
MRFKKFGWLILNWLPLLGLLTLVISVSNRWNWVHTYDRYLQKIIHGWQSPGLTPLVKIYTQLGNAKPFIFISIVILGMLLWRGYDRLAAFFLANVVLGNAINHLIKLWIRRPRPHFRLITIGGYSFPSGHSVAAMLLFGSLIFITTQTVRSHKWRISWILTCIILMLLLGLSRVYLNVHYPSDVTAGLLLGLVILQTTHWIFYRKKESQHA
>NZ_CP021487.1|WP_065124322.1|631503_633921_+|leucine--tRNA-ligase
MAYNHKEIEPKWQRYWQKHETFKTVESEQKPKYYALDMFPYPSGQGLHVGHPEGYTATDIMSRMKRMQGYKVLHPMGWDAFGLPAEQYAMKTGNNPKDFTAHNIKNFKRQIQSLGFSYDWSREVNTTDPEYYKWTQWIFEQLYKKGLAYEKETLVNWAPDLMGGTVVANEEVVNGKTERGGFPVYRKPMKQWILKITAYADRLIDDLDLVDWPDSIKEMQKNWIGRSIGASVFFDVEDSDQKIEIFTTRADTLYGATYLVISPEHPLVDQLTTLESKAAVEEYKQAVATKSDLERTDLNKDKTGVFTGSYAVNPVNGKKIPIWIADYVLASYGTGAVMAVPAHDPRDYEFARKFKIDIVPVIGGGNLDEEAYTGDGPHINSGFLDGLNKQEAIDKMLDWLEEHGAGHKKVNYRLRDWVFSRQRYWGEPIPVIHWEDGETTLVPEDELPLRLPATDNIKPSGTGESPLANLEDWLNVVDENGRKGRRETNTMPQWAGSSWYFLRYVDPKNQNKIADEDLLKEWLPVDLYVGGAEHAVLHLLYARFWHKVLYDLGVVPTKEPFQKLVNQGMILGSNHEKMSKSKGNVVNPDDIVERFGADTLRLYEMFMGPLTESVAWSEEGLNGSRKWIERVWRLMIDDNNHLRDRITMINDHKLDLIYNQTVKKVTEDYENMRFNTAISQMMVFVNEAYKADALPMVYMEGLVKLLSPIVPHVAEEIWQIMGHDETITYEAWPTYDESKLVQDTVQVILQVNGKVRSKVEVEKDLDQAELEKIALADERIQQWTAEKDIKKVIVIPNKIVNIVAK
>NZ_CP021487.1|WP_065124321.1|634176_635859_+|polysaccharide-biosynthesis-protein
MDKPSEFDTAESQYLGSQPLRENSGNSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVIWFGVYSDQANALYTKGYNIYSFFLIAAIAGIPSAISKQVAHYNAINEFALGQRLYKRGLLLSVGTGVVCAAILFFGAPFLNDGDPNVTTVLHALAWAVLVIPTMSLTRGFFQGYQEMGPSAVSQFIEQLARVAYMLVTAYLIMYKNHGDWVYGVAQSTFAAFIGALGGLLVLIGYFVKYRRRLRYLSQHSVNGLAISTTSLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMRSVSDYSATVLNNMFAIFAFNANKLVMIVISLASALAVTSVPILSEAKTRGDRAEISRQVADSILLFSFLMIPSALGMAAVAQPAYTLFYHLSDVGTAILQFNSYVAIVLGLFTVISAVMQGIGENVLAVKYFVVGMIVKFIFQFPMVAIFSAVGSLISTAIGFAVVNWLILRHINREYGLDYDKINGFIGKIITYSFGTFFIAFVVTNGLYLVMNPANKVQALIVILVAATLGGLFYVVCVLKSRLADEIIGGRAAGLRRMLKIK
>NZ_CP021487.1|WP_005919135.1|635869_636589_+|16S-rRNA-pseudouridine(516)-synthase
MRVDKFLHDMNVGTRSQIRKLIKEKAVFVNDVVAKSGRVKVDPVVDQVRLGEQVITYQQYFYFMMNKPLGVVTATEDRKQKTVMDLFNKVDFRKDLFPVGRLDKDTEGLLLITNNGPLAHQLLAPERHVQKTYEAVVTGQITDPAVKQFADGMVLKDGTQLKPADLTILNYSALDEQTLVHVTLKEGKYHQVRRMFGSLGERVVSLKRISFGPLQLEEGLLPGTYRELSDEEIEKLKTE
>NZ_CP021487.1|WP_065124320.1|636695_637526_-|NAD(P)H-hydrate-dehydratase
MLKISRQTLKSHWPVRQKQSHKGTYGHLLLIAGNAQYGGAGILAASAAVYAGGGLVTLATAKNNFTAVRATLAEIMLIDFTDFDQLSQSLANATGVVIGPGLGTDSTSLAVLNFTLAHIAEGVPLIIDGSAIDLVAQHDLQVSHHPTIYTPHQMEWQRLSGIKIADQSVERNQAVVDQLNATVVLKHYHTEIYAPAAPVAQIMAGNPGMATGGSGDSLTGILLALIAQANSVNEGVRLGTFLHSYTADLIYEHEAVVLPHRLIRRLPAVLKQLTQP
>NZ_CP021487.1|WP_065124319.1|637651_638113_+|universal-stress-protein
MDYKKILFGYDGSPESMAAFNRAVEIAKSNHAKLIIASVMKKQHANTASVSLGFGVIETGIDLQDTLGQWKTTLEKLKQDAQQQGLPAEDIEVVFKQGSPKSMLSYTLPKEYDVDLIVLGATGMGTVAQVILGSTASYVVENAAPDVVIVKNN

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Crispr_ID: NZ_CP021487_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021487_3

1509457-1509613

Orphan

Consensus_repeat	Method
ATCTCTTCGTCGCCTAGCTCCTCGACATTACTGTGAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP021487_3

>merge|NZ_CP021487|3|1509457-1509613|PILER-CR
ATTTCTTCGTCGCCTAGCTCCTCGACATTACTGTGACACTCTCAACGGTTCGGATCTTGCCAATCACTCGTCGCCTTGCTCCTCCTTCTTGGAGTCCTATCGCATGGAGCGTCTCTAGCAATCTCTTCGTCGCCTAGCTCCTCGACATTACTGTGAC

>NZ_CP021487|3|2|1509457-1509613|PILER-CR
ATTTCTTCGTCGCCTAGCTCCTCGACATTACTGTGAC	ACTCTCAACGGTTCGGATCTTGCCAATCAC
TCGTCGCCTTGCTCCTCCTTCTTGGAGTCCTATCGCA	TGGAGCGTCTCTAGCAATCTCTTCGTCGCCTAGCTC
CTCGACATTACTGTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021487.1\|WP_065124675.1\|1508464_1509091_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP021487.1\|WP_002832208.1\|1507803_1508262_+\|flavodoxin	unknown	unknown	gnl\|CDD\|180922
NZ_CP021487.1\|WP_002832221.1\|1520241_1520814_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP021487.1\|WP_008841091.1\|1505077_1506208_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP021487.1\|WP_065124673.1\|1512252_1513680_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP021487.1\|WP_024862999.1\|1502962_1504531_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP021487.1\|WP_002832222.1\|1520835_1521477_-\|glycoside-hydrolase-family-73-protein	unknown	unknown	gnl\|CDD\|224619
NZ_CP021487.1\|WP_065124672.1\|1513679_1515140_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP021487.1\|WP_065124677.1\|1498341_1499076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021487.1\|WP_005918921.1\|1500690_1502859_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP021487.1\|WP_005918925.1\|1499318_1499681_-\|DUF1634-domain-containing-protein	unknown	unknown	gnl\|CDD\|377927
NZ_CP021487.1\|WP_002832220.1\|1519068_1520208_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|235674
NZ_CP021487.1\|WP_005918907.1\|1511229_1512225_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|237282
NZ_CP021487.1\|WP_065124668.1\|1525537_1526656_+\|DUF4767-domain-containing-protein	unknown	unknown	gnl\|CDD\|374270
NZ_CP021487.1\|WP_005918900.1\|1515139_1515454_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP021487.1\|WP_065124670.1\|1521577_1522186_-\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|227029
NZ_CP021487.1\|WP_002832202.1\|1504597_1505002_-\|glycerol-3-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|173922
NZ_CP021487.1\|WP_005918898.1\|1515473_1516631_-\|CamS-family-sex-pheromone-protein	unknown	unknown	gnl\|CDD\|377863
NZ_CP021487.1\|WP_002832206.1\|1506288_1506843_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP021487.1\|WP_065124676.1\|1506935_1507751_-\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|237619

Protein	Function_ID	Function_description	E-value
NZ_CP021487.1\|WP_065124675.1\|1508464_1509091_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	8.07948e-26
NZ_CP021487.1\|WP_002832208.1\|1507803_1508262_+\|flavodoxin	gnl\|CDD\|180922	PRK07308, PRK07308, flavodoxin; Validated.	6.43634e-46
NZ_CP021487.1\|WP_002832221.1\|1520241_1520814_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.2203e-114
NZ_CP021487.1\|WP_008841091.1\|1505077_1506208_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	7.75449e-60
NZ_CP021487.1\|WP_065124673.1\|1512252_1513680_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP021487.1\|WP_024862999.1\|1502962_1504531_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP021487.1\|WP_002832222.1\|1520835_1521477_-\|glycoside-hydrolase-family-73-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	6.48525e-64
NZ_CP021487.1\|WP_065124672.1\|1513679_1515140_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP021487.1\|WP_002832220.1\|1519068_1520208_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.77244e-57
NZ_CP021487.1\|WP_005918921.1\|1500690_1502859_-\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	1.53318e-158
NZ_CP021487.1\|WP_005918925.1\|1499318_1499681_-\|DUF1634-domain-containing-protein	gnl\|CDD\|377927	pfam07843, DUF1634, Protein of unknown function (DUF1634). This family contains many hypothetical bacterial and archaeal proteins. A few members of this family are annotated as being putative transmembrane proteins, and the region in question in fact contains many hydrophobic residues.	9.2811e-29
NZ_CP021487.1\|WP_005918907.1\|1511229_1512225_-\|diacylglycerol-kinase	gnl\|CDD\|237282	PRK13055, PRK13055, putative lipid kinase; Reviewed.	0
NZ_CP021487.1\|WP_065124668.1\|1525537_1526656_+\|DUF4767-domain-containing-protein	gnl\|CDD\|374270	pfam15983, DUF4767, Domain of unknown function (DUF4767). This domain family is found in bacteria, and is approximately 140 amino acids in length. There is a single completely conserved residue Q that may be functionally important.	3.09903e-43
NZ_CP021487.1\|WP_005918900.1\|1515139_1515454_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	9.55701e-35
NZ_CP021487.1\|WP_065124670.1\|1521577_1522186_-\|ECF-transporter-S-component	gnl\|CDD\|227029	COG4684, COG4684, Predicted membrane protein [Function unknown].	2.31584e-13
NZ_CP021487.1\|WP_002832202.1\|1504597_1505002_-\|glycerol-3-phosphate-cytidylyltransferase	gnl\|CDD\|173922	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.	4.28211e-70
NZ_CP021487.1\|WP_005918898.1\|1515473_1516631_-\|CamS-family-sex-pheromone-protein	gnl\|CDD\|377863	pfam07537, CamS, CamS sex pheromone cAM373 precursor. This family includes CamS, from which Staphylococcus aureus sex pheromone staph-cAM373 is processed.	8.56407e-152
NZ_CP021487.1\|WP_002832206.1\|1506288_1506843_-\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	3.25922e-114
NZ_CP021487.1\|WP_065124676.1\|1506935_1507751_-\|recombination-regulator-RecX	gnl\|CDD\|237619	PRK14135, recX, recombination regulator RecX; Provisional.	2.51662e-92

>NZ_CP021487.1|WP_065124675.1|1508464_1509091_-|N-acetyltransferase
MEKDYLIRLEQPADYQKTEAMVREAFWNVYRPGCYEHYVLHVLRKSSEFVPQLNLVMEKDHQIIGQICFVKAKLVDKNGNEVPVLTFGPLSIAPAYQRKGYGKKLLDYGIAQARKWGASALCIEGNLAFYKHAGFEIATTKGIRYASEPENGELPYFLAKELREGFFEQVQGALYYTPSAYYVSESDVNKFDQQFPPKEKRVLPGQLA
>NZ_CP021487.1|WP_002832208.1|1507803_1508262_+|flavodoxin
MPTAKVVFATITGNNEDCADIITEALEDLGVEVDETEISQTDAAELKDYDINVIVPYTYDEGALPEEGLDFYDDLADLDLSGKIYGVAGSGDTFYEEFYCVAVDKFSEALTKANATKGTADLKINLAPESQEDLDHLDQFAQDLVDAYNAQN
>NZ_CP021487.1|WP_065124676.1|1506935_1507751_-|recombination-regulator-RecX
MININSEETKKITKITAQKRAGRYNVFLDGEYAFPISEETFIHFRLGKGMAVNGTLLKEIGEYETNAEAYNIALTYITGQLRTENEVRQKLRQQDYEESIIEAVIAKLADLNLLDDQEYAKSYVRTMMRTGDKGPRYLINHLRQKGVLENDLQAGLQLFTDVEQVALAVRVGQKLQKRHQAQALRQQQLKIRQNLMQKGFTSEIIEKALAEIEFTVDSDAEYEKLRKLGERLLRRYQGQPEYQRTTKIKRSLYQKGFEMELIERFLNENDS
>NZ_CP021487.1|WP_002832206.1|1506288_1506843_-|DUF402-domain-containing-protein
MSQYSDGPKEGEYIAIKSYKHDGSLHRTWRETMVLKNSQDEFIGCNDHTVVIEDNDRRWVTREPALVYFNKHTWFNVVAMIRDNGVSYYCNIASPYVLDREALKYIDYDLDVKVFPNGERRLLDTDEFEQFSRQWHYSADTIQILLDSVRELTDWINKKRGPFSVEFINIWYKRYLNIAERNTR
>NZ_CP021487.1|WP_008841091.1|1505077_1506208_-|AI-2E-family-transporter
MFEKFRKTPLMYWSLELLIIATLLWVCTKIDFLFSPIGTFISTVFMPLILATFLYYMLHPLVKLLMKVHYKKFRISRTWAVVLVFVGFLLLIAWGISSFLPSLIDQISQMLGNLPMIAKKLQVAIPQLVDHSWLRKVDFDPYLKNLNSEIGQYAEQFLANMTNSIGNIIAALTNITVIVITVPIILFYMLKDGYKLIPTISRIVPEHNRKSVLDLFYSMSDTLSSYISGQVIECIFVGTFTVIGYMIIHQPYGLVLGVIAGICNIIPYVGPYFGIFPSLLVAIAQSPEQVISVIIVVLIVQQVDGNLIYPNVIGKSLQIHPLTIIILLLVAGKLAGILGMILAVPTYAIVKVLINFIHHIWVLDRDKIEEKVKPEK
>NZ_CP021487.1|WP_002832202.1|1504597_1505002_-|glycerol-3-phosphate-cytidylyltransferase
MTRVITYGTFDLLHKGHVRLLKRARELGDHLTVCLSTDEFNAVKGKKAYTPYEDRKYILEAIKYVDEVIPERGWDQKINDVKENDIDIFVMGDDWKGQFDFLKDYCKVIYLPRTEGISTTKIKRDLGLGDYKKD
>NZ_CP021487.1|WP_024862999.1|1502962_1504531_-|peptide-chain-release-factor-3
MNQAELKAAVDKRRTFAIISHPDAGKTTITEQLLLFGGVVREAGTVKARKTGNYAKSDWMEIEKKRGISVTSSVMQFDYAGKRINILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEPQTKKLFQICKMRGIPIFTFMNKLDRDGREPLDLVNELEEVLGIDAYPMNWPIGMGKGLAGLYDIYNNRIELHTDEPEYLALDSNGELKEPNPIEEESVFQDAMMEVDLMKEAGNQFDEAKIAKGELTPVFFGSALTNFGVKTFLDAYLQFAPAPSAHKVADGEQIQPTDEEFSGFVFKIQANMNPNHRDRIAFLRICSGEFDRGMDVTLKRTGKTLRLSNSTQFMADARENVERAVAGDIIGLYDTGNFQIGDTIYAGKQPVQFEKLPQFTPELFMGVSAKNVMKQKSFHKGIQQLVQEGAVQLYTNYTTGDYILGAVGQLQFEVFQFRMQNEYNSEVVMQPMGKKIARWINPEQLDEKMSSSRNLLVKDRAGQPLFLFENQFAERWFKGKYPDVELTAKL
>NZ_CP021487.1|WP_005918921.1|1500690_1502859_-|LTA-synthase-family-protein
MNRLWGKFRRGLNTKFGFFMLITGLFWLKSYIAYQTKFTLGVQGGMQELILAISPLGFAILLFGIGLYIRGKWAYWYMIVMDAILSTWLFANILYYREFSDFITFNLIKGSGAASDNLGKSLMGILRPTDFLVFVDVIFVIAILAFGFAKIDQQRFKLVNSLAVTILSIGVLAANLALAYSNRSGLLTRTFDNNYIVKYLGLQSFTLYDGVKTVQNSNKKKEAKSSQLKPINEFLKKNNVPANIEYKGVAKGKNVIIIHLESLQQFVINQKWKGKEITPNINKFYNDKNTLAYDNFFNQVGQGKTADAEMMLENSLFGLPEGSAMVTDGTTNTFQSMPAIMDQHGYTTAAFHGDVASFWNRDNAYKSFGYQYFFSKQYYSLKKGYVSGYGMKDKLFLQQSAKFLEELPQPFYAKLITVSNHYPYGIEKKNVSIDPWETGDSTVDPYVQTAHYLDQAVGELISYLKKTGLYDKSLIMMYGDHYGISNNHKPAIAKILGLKGVTNYDLAMFQKVPFMIHAPGLKGGVNHNYSGEIDVMPTLLNLLGIDTPGAYQFGHDINSKQYNQIVAFRNGDFVSKKYTKYGGDLYYTATGEQITDETASQKREVKQIQQYVNNELNYSDRIINGDLLRFADLDWFKKVNKADYSYTKKTALKNLKKAQKSKTSLLEQNHGRSTVDDYVTDAPELPENEDKAASSSSSSNSSSEDSSHSGSSSADPATQEDK
>NZ_CP021487.1|WP_005918925.1|1499318_1499681_-|DUF1634-domain-containing-protein
MNAKQKEMNHVELLIGRILQVGVYISAIVIICGIGLWLVKNGSGYAGALPTRLGVIFQGAMQLKPYAVLMLGIFLLILTPVLRVVVSIYAFAKEGDRLYVAITTIVLIILIIGMTIGYQG
>NZ_CP021487.1|WP_065124677.1|1498341_1499076_-|hypothetical-protein
MKVEPNVVISEFIVNMTDDLYHKDNSKIDISEKVKKQADSLANFKVPYYVLTNGPGQENLEKGLTITHVDLFEHYPDLTLYFYRILMAFDFLKDHPEIEKAALTDAGDVTMLNYPFDSVREGILYIGDETSSLFNTAIIINSDAPTYMKDFIWENNDLPILNLGIMVGTRDVLIEYLGIMVKLITEAEVKIKQGDDSYRLGKFEMLISNYVAYRYFSNRLIHGREVSTIFNGHQEVSSAWFKHK
>NZ_CP021487.1|WP_005918907.1|1511229_1512225_-|diacylglycerol-kinase
MRKRARIIYNPTSGREMIKQHLVEILAVFEKAGYETSAFATTPEPNSAKNEAHRAAKDGFDLVVAAGGDGTINEVVNGIAPLHRRPKLAIIPAGTTNDYARALRIPREDPVAAAKVVLQNQRMKMDIGKAGDNYFINIAAGGLLTELTYDVPSNLKSIFGYLAYIVKGAEMLPRVKPVEMDIEYDGEHFHGQASMFFLALTNSIGGFEQIVPDASLDDGKFTMIIVKSSSLPDLLHLMVKALNGKHVDDPRIIYRKARKVVVNPVNERVMVNLDGEYGGDAPMVFKNLKRHIDMFTNLDSVPVSEPEDDEYRQVEEQFVAEVQNLSQDDQE
>NZ_CP021487.1|WP_065124673.1|1512252_1513680_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MNFKTTIGLEVHIELKTNSKIFSPSPVEFGDQPNENTNVIDWGYPGVLPQTNKGVVEAGMMAAKALHANIARTQHFDRKNYFYPDNPKAYQITQADTPIGTDGWIEIEVDGKKKKVGIAEMHIEEDAGKNTHNPNGYSYVDLNRQGTPLIEIVSKPDIESPDEAYAYLEALRQRIQFTGISDVKMEEGSMRVDVNISIRPEGSNTYGTKAELKNINSFNFVRKGLAYEEKRQQKLLLSGGEVRPETRRYDEATGQTILMRVKEGADDYRYFPEPDLPSITISDEWIKAVEDKMPEMPGKRRARYVNELGLSDYDAMVLTQTKEMSDFFEAAIAFDADPKLVANYLMGDVNAYLNDQKVDLQDTKITPEHLASMVKMISDETISSKIAKKVFKAITKGEEPVSWVKERGLVQLSDPAVLKPIITQVVDDNEQSVIDFKNGKDRAVGFLVGQIMKQTKGQANPKVVNQILMQELNAR
>NZ_CP021487.1|WP_065124672.1|1513679_1515140_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MKFFDITVTELHQKLVDRELTVTELVSQTLDQIEADQAVLNDFVTINRDEALKQAQAIDEKGVDPDNLWAGIPIAVKDNIVTKGLKTTASSKMLSNFTPIYDATVIERLKANDVIVIGKTNLDEFAMGGSTETSFYGTTRNPWDHTKVPGGSSGGSATTVAAGNSIAALGSDTGGSIRQPASYTGIVGVKPTYGRISRYGLIAFGSSLDQIGPMTRTVKDNAALLNIIAGMDERDLTSSDKEVPDFTAKIGQDIKGMKIALPKEYLGKGINADVKATIKQAVQTLTDLGATVEEVSLPRSNYGVAAYYIIGSSEASSNLQRFDGIRYGYRADDVKNLEDVYVKSRSEGFGDEVKRRIMLGTYALSAGSYDAFFKKAAQVRTLIIDDFNKVFENYDLIIGPTAPTPAYKIGAEVDDPTTMYMNDVLTIPVNLAGLPAMSLPAGFSEGMPVGLQMIAKPFDEQTMYQAGAAFEAATNFYQKHPETEDK
>NZ_CP021487.1|WP_005918900.1|1515139_1515454_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MTVENNITKNDVAHVATLAKLKLDDAQLEKFTNQFEDIIDLVEQLNEVDTTDVEPTFNVTDQLNRMREDQAVRSGDKEALLNNAPDTEDGFIRVPAILDESEEA
>NZ_CP021487.1|WP_005918898.1|1515473_1516631_-|CamS-family-sex-pheromone-protein
MKVTKKISLLVATLLLGVGLSACGGLNNSSMSSATNNVTGEKNKKTTYQTTGSSSGQYAGVIKNGKYVVSKSRGLTADQNGNVNNTKSFETGLQDVSKEVFAPSKYVFQEGQYLSSDTVQSWLDRKSKKNPDGLNPKDNGSKDPDKRNPIYLQALEEQDYMQKSGNSLKLKGVTIGLAMNTVDYYQKKQYGAEYETKISDAEIKEQSTRIAKEVLQRLRKKDEFKNIPIVIAVYKQASNDSLTGGTFIRYSNNQGNQLASWKNLDYKNVVYPIGDNESTPNSNDSTAFDNFKTQVESFFPNLSGITAKARYKGDSMQGMSVTITTQFYSETEINSFTQFVSTQAEKYLPSGVNIDITIRSSDDVQSFLSRSSKDKTFSSHVFTSY
>NZ_CP021487.1|WP_002832220.1|1519068_1520208_-|ATP-grasp-domain-containing-protein
MENEVITSKKIIYPGDMIGIIGEGRSSVQLVTTAKSMGFKVSVYVTSEQNEVVHYADKSFVGSLNDGEKLQRFAERCKIVMYESEMVDIKIIKYLQQFVSIPQGTQLLELNQDRIIEKATMEQLGIKTAPYVTIVDLDDLYDSVNEIGYPGILQPILKDPLNEQSLLLESEIDVPKAAPLLERGTYLLQSWPDTGREVALSVVKGQNHRQKMFPMVENIYQNHHLKETRVPVDIDPRIQNNLLEQATKIANSIEYVGVFSIVFYVQDGEIYLKRLIPGIHRSQNIFNLASNTTVYEETLRALSGMVISDIRLQVPTIMLNVAEPQMQKIKTQWLIKDNWHFHFYPQVSEHKDENHVGYVLADGDNVKQIQEQIDNTDVW
>NZ_CP021487.1|WP_002832221.1|1520241_1520814_-|xanthine-phosphoribosyltransferase
MKLLEDKIRSEGIVLPHNVLKVDGFLNHQVDPQLMFEIGKEFARLFKDQKVTKILTVESSGIAPAVMTGLAMDVPVIFARKHKSLTLKDDLYTASVYSYTKQTSNQISISKRFIDSNDRVLIIDDFLANGQAVSGLFDIADAAKIDVVGVGIVIEKTFQKGSQIIKDRNVQLESLAKIKALTDDGQVEFE
>NZ_CP021487.1|WP_002832222.1|1520835_1521477_-|glycoside-hydrolase-family-73-protein
MAKKKRRRKNNFFYQQGQLKVSSIIGLLLVVCLVVELGMKLRTEATQVTDNLTTTSATAQRHQQFIKTIAPYAQQMQRQYGILPSITMAQAILESDWGQSTLSKKFNNYYGIKGDSDQNSRYFKTQEFVNGKWVTVAARFKVYSSWQESMRDHSLLLVNGTNWNPRQYQAVITASDYKQAAQALYDAQYATDPDYPAKLINLIQKYNLNQYDK
>NZ_CP021487.1|WP_065124670.1|1521577_1522186_-|ECF-transporter-S-component
MQQANYARKISILALFAAIIIIQNYVPLIGYIPVGPLEITTIHITVIVAAILLGPVDGGIIGGIWGLVDWLRAITVTSSALGNVVMVNPLISIVPRILIGVITGWLVNWLIKTRVPQQATFLIGAIVGSLVNTVLVLSLIYVFYHNGSQVYTALNLKELMPYLLTVAGMHGIPEAIAAGIIVPLLATPLLKFSKIGQQRFKQ
>NZ_CP021487.1|WP_065124668.1|1525537_1526656_+|DUF4767-domain-containing-protein
MQNLKRTFGWLASIGMGALLLTACGNSNSSSSSVHQNTATDLTKSSQARSTTHKATPSALWDQRKAEQLSSFMESFGQTMDQSYTACTPGHNTTYAGLHYPDDLKQQRTAFDDQKLSAGWAPTGKGHYRVNVVAVYEDPGQGTLGGHVYLFAIKDGKPVVYHTSQNQGMPDNLTHFTTTENQTLRQGFAKIVAGQQVALPNKSSSSKKAVAPTHHYVKFVFPQWMQGTWYSADDDGKIEKLVVTGNLLNTDGVKTPTYDRASRTAADMKVLNGGGKPDPAKTDWGAGGLNSPSGSLFGDPSKVSQVVNVRGWYQGAGDGTYFYTSTEKDGGQPFTVLTQAGGAGMWLTAHYYRSVGLAKQHQDEHYSTDRDN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021487_1	1.17\|438976\|30\|NZ_CP021487\|CRT	438976-439005	30	JN700520	Staphylococcus phage StB12, complete genome	7254-7283	4	0.867
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	MN693447	Marine virus AFVG_25M466, complete genome	28191-28220	6	0.8
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	MN698240	Pelagibacter phage HTVC026P, complete genome	8967-8996	6	0.8
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	AP014442	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C27A-MedDCM-OCT-S26-C72, * SEQUENCING IN PROGRESS *, 7 ordered pieces	5507-5536	6	0.8
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	MN693479	Marine virus AFVG_25M465, complete genome	2205-2234	6	0.8
NZ_CP021487_1	1.15\|438911\|30\|NZ_CP021487\|CRISPRCasFinder	438911-438940	30	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	351468-351497	6	0.8
NZ_CP021487_1	1.17\|438976\|30\|NZ_CP021487\|CRT	438976-439005	30	NZ_CP028882	Borreliella bavariensis PBi plasmid lp28-3, complete sequence	22440-22469	6	0.8
NZ_CP021487_1	1.17\|438976\|30\|NZ_CP021487\|CRT	438976-439005	30	NC_017804	Borreliella garinii BgVir plasmid lp54, complete sequence	58009-58038	6	0.8
NZ_CP021487_3	3.1\|1509494\|30\|NZ_CP021487\|PILER-CR	1509494-1509523	30	NC_031280	Acinetobacter phage vB_AbaM_phiAbaA1, complete genome	47055-47084	6	0.8
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	MN693447	Marine virus AFVG_25M466, complete genome	28191-28221	7	0.774
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	MN698240	Pelagibacter phage HTVC026P, complete genome	8967-8997	7	0.774
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	AP014442	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C27A-MedDCM-OCT-S26-C72, * SEQUENCING IN PROGRESS *, 7 ordered pieces	5506-5536	7	0.774
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	MN693479	Marine virus AFVG_25M465, complete genome	2205-2235	7	0.774
NZ_CP021487_1	1.16\|438910\|31\|NZ_CP021487\|CRT	438910-438940	31	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	351468-351498	7	0.774
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	GU071097	Synechococcus phage S-SSM5, complete genome	162631-162661	8	0.742
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	KY065458	Streptococcus phage IPP17, complete genome	2147-2176	8	0.733
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	MK448914	Streptococcus phage Javan348, complete genome	2147-2176	8	0.733
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	KY065462	Streptococcus phage IPP21, complete genome	2147-2176	8	0.733
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	KY065454	Streptococcus phage IPP12, complete genome	2148-2177	8	0.733
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	GU071097	Synechococcus phage S-SSM5, complete genome	162631-162660	8	0.733
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	KY065471	Streptococcus phage IPP30, complete genome	2147-2176	8	0.733
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	KY065461	Streptococcus phage IPP20, complete genome	2147-2176	8	0.733
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	KY065470	Streptococcus phage IPP29, complete genome	2147-2176	8	0.733
NZ_CP021487_1	1.14\|438845\|30\|NZ_CP021487\|CRISPRCasFinder	438845-438874	30	AP014440	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S30-C70, * SEQUENCING IN PROGRESS *, 2 ordered pieces	1676-1705	8	0.733
NZ_CP021487_1	1.15\|438911\|30\|NZ_CP021487\|CRISPRCasFinder	438911-438940	30	MN694669	Marine virus AFVG_250M354, complete genome	11076-11105	8	0.733
NZ_CP021487_1	1.15\|438911\|30\|NZ_CP021487\|CRISPRCasFinder	438911-438940	30	NZ_CP012641	Massilia sp. WG5 plasmid unnamed 1, complete sequence	200-229	8	0.733
NZ_CP021487_1	1.15\|438911\|30\|NZ_CP021487\|CRISPRCasFinder	438911-438940	30	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	370076-370105	8	0.733
NZ_CP021487_1	1.1\|438448\|31\|NZ_CP021487\|PILER-CR,CRT	438448-438478	31	NC_048053	Dickeya phage vB_DsoM_JA29, complete genome	104794-104824	9	0.71
NZ_CP021487_1	1.1\|438448\|31\|NZ_CP021487\|PILER-CR,CRT	438448-438478	31	MH389777	Dickeya phage vB_DsoM_JA11, complete genome	104074-104104	9	0.71
NZ_CP021487_1	1.1\|438448\|31\|NZ_CP021487\|PILER-CR,CRT	438448-438478	31	MH460462	Dickeya phage vB_DsoM_JA33, complete genome	104064-104094	9	0.71
NZ_CP021487_1	1.1\|438448\|31\|NZ_CP021487\|PILER-CR,CRT	438448-438478	31	MH460460	Dickeya phage vB_DsoM_JA13, complete genome	104268-104298	9	0.71
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	KY065458	Streptococcus phage IPP17, complete genome	2146-2176	9	0.71
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	MK448914	Streptococcus phage Javan348, complete genome	2146-2176	9	0.71
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	KY065462	Streptococcus phage IPP21, complete genome	2146-2176	9	0.71
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	KY065454	Streptococcus phage IPP12, complete genome	2147-2177	9	0.71
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	KY065471	Streptococcus phage IPP30, complete genome	2146-2176	9	0.71
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	KY065461	Streptococcus phage IPP20, complete genome	2146-2176	9	0.71
NZ_CP021487_1	1.7\|438844\|31\|NZ_CP021487\|PILER-CR,CRT	438844-438874	31	KY065470	Streptococcus phage IPP29, complete genome	2146-2176	9	0.71
NZ_CP021487_1	1.8\|438449\|30\|NZ_CP021487\|CRISPRCasFinder	438449-438478	30	NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	87798-87827	9	0.7
NZ_CP021487_1	1.8\|438449\|30\|NZ_CP021487\|CRISPRCasFinder	438449-438478	30	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	36181-36210	9	0.7
NZ_CP021487_1	1.9\|438515\|30\|NZ_CP021487\|CRISPRCasFinder	438515-438544	30	NZ_CP031163	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence	197629-197658	9	0.7
NZ_CP021487_1	1.16\|438910\|31\|NZ_CP021487\|CRT	438910-438940	31	MN694669	Marine virus AFVG_250M354, complete genome	11075-11105	9	0.71
NZ_CP021487_1	1.16\|438910\|31\|NZ_CP021487\|CRT	438910-438940	31	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	370076-370106	9	0.71
NZ_CP021487_1	1.16\|438910\|31\|NZ_CP021487\|CRT	438910-438940	31	NZ_CP012641	Massilia sp. WG5 plasmid unnamed 1, complete sequence	199-229	9	0.71
NZ_CP021487_1	1.12\|438713\|30\|NZ_CP021487\|CRISPRCasFinder	438713-438742	30	NC_008208	Aeromonas phage 25, complete genome	7986-8015	10	0.667
NZ_CP021487_1	1.12\|438713\|30\|NZ_CP021487\|CRISPRCasFinder	438713-438742	30	DQ529280	Aeromonas salmonicida bacteriophage 25, complete genome	7986-8015	10	0.667

1. spacer 1.17|438976|30|NZ_CP021487|CRT matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 4, identity: 0.867

cacgatttaccgttttaggaatgatttaga	CRISPR spacer
gacgatttaccgttctaggagtgatttaaa	Protospacer
 *************.*****.*******.*

2. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to MN693447 (Marine virus AFVG_25M466, complete genome) position: , mismatch: 6, identity: 0.8

caatattaatatcttcaatccaattggact	CRISPR spacer
tttcattaatatcttcaatccaattaaact	Protospacer
.  .*********************..***

3. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to MN698240 (Pelagibacter phage HTVC026P, complete genome) position: , mismatch: 6, identity: 0.8

caatattaatatcttcaatccaattggact	CRISPR spacer
tctcattaatatcttcaatccaattaaact	Protospacer
.  .*********************..***

4. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to AP014442 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C27A-MedDCM-OCT-S26-C72, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 6, identity: 0.8

caatattaatatcttcaatccaattggact	CRISPR spacer
tctcattaatatcttcaatccaattaaact	Protospacer
.  .*********************..***

5. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to MN693479 (Marine virus AFVG_25M465, complete genome) position: , mismatch: 6, identity: 0.8

caatattaatatcttcaatccaattggact	CRISPR spacer
tttcattaatatcttcaatccaattaaact	Protospacer
.  .*********************..***

6. spacer 1.15|438911|30|NZ_CP021487|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcaatcggaaaagcagcaggtattccag	CRISPR spacer
tgccaatcggaaaaacagcaagtattttag	Protospacer
*  ***********.*****.*****..**

7. spacer 1.17|438976|30|NZ_CP021487|CRT matches to NZ_CP028882 (Borreliella bavariensis PBi plasmid lp28-3, complete sequence) position: , mismatch: 6, identity: 0.8

cacgatttaccgttttaggaatgatttaga	CRISPR spacer
tagaaattagcgtattaggaatgatttaga	Protospacer
.* .* *** *** ****************

8. spacer 1.17|438976|30|NZ_CP021487|CRT matches to NC_017804 (Borreliella garinii BgVir plasmid lp54, complete sequence) position: , mismatch: 6, identity: 0.8

cacgatttaccgttttaggaatgatttaga	CRISPR spacer
tagaaattagcgtattaggaatgatttaga	Protospacer
.* .* *** *** ****************

9. spacer 3.1|1509494|30|NZ_CP021487|PILER-CR matches to NC_031280 (Acinetobacter phage vB_AbaM_phiAbaA1, complete genome) position: , mismatch: 6, identity: 0.8

actctcaacggttcggatcttgccaatcac	CRISPR spacer
attatcaacggttcagatcgtgccaatgat	Protospacer
*.* **********.**** ******* *.

10. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to MN693447 (Marine virus AFVG_25M466, complete genome) position: , mismatch: 7, identity: 0.774

ccaatattaatatcttcaatccaattggact	CRISPR spacer
gtttcattaatatcttcaatccaattaaact	Protospacer
 .  .*********************..***

11. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to MN698240 (Pelagibacter phage HTVC026P, complete genome) position: , mismatch: 7, identity: 0.774

ccaatattaatatcttcaatccaattggact	CRISPR spacer
gtctcattaatatcttcaatccaattaaact	Protospacer
 .  .*********************..***

12. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to AP014442 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C27A-MedDCM-OCT-S26-C72, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 7, identity: 0.774

ccaatattaatatcttcaatccaattggact	CRISPR spacer
gtctcattaatatcttcaatccaattaaact	Protospacer
 .  .*********************..***

13. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to MN693479 (Marine virus AFVG_25M465, complete genome) position: , mismatch: 7, identity: 0.774

ccaatattaatatcttcaatccaattggact	CRISPR spacer
gtttcattaatatcttcaatccaattaaact	Protospacer
 .  .*********************..***

14. spacer 1.16|438910|31|NZ_CP021487|CRT matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.774

cttgcaatcggaaaagcagcaggtattccag	CRISPR spacer
atgccaatcggaaaaacagcaagtattttag	Protospacer
 *  ***********.*****.*****..**

15. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to GU071097 (Synechococcus phage S-SSM5, complete genome) position: , mismatch: 8, identity: 0.742

ccaatattaatatcttcaatccaattggact	CRISPR spacer
caaatattaagatcttgaatccaataaaaaa	Protospacer
* ******** ***** ******** ..*

16. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to KY065458 (Streptococcus phage IPP17, complete genome) position: , mismatch: 8, identity: 0.733

caatattaatatcttcaatccaattggact	CRISPR spacer
ctatataaatatcttcaatgcaatttttaa	Protospacer
* **** ************ *****

17. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to MK448914 (Streptococcus phage Javan348, complete genome) position: , mismatch: 8, identity: 0.733

caatattaatatcttcaatccaattggact	CRISPR spacer
ctatataaatatcttcaatgcaatttttaa	Protospacer
* **** ************ *****

18. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to KY065462 (Streptococcus phage IPP21, complete genome) position: , mismatch: 8, identity: 0.733

caatattaatatcttcaatccaattggact	CRISPR spacer
ctatataaatatcttcaatgcaatttttaa	Protospacer
* **** ************ *****

19. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to KY065454 (Streptococcus phage IPP12, complete genome) position: , mismatch: 8, identity: 0.733

caatattaatatcttcaatccaattggact	CRISPR spacer
ctatataaatatcttcaatgcaatttttaa	Protospacer
* **** ************ *****

20. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to GU071097 (Synechococcus phage S-SSM5, complete genome) position: , mismatch: 8, identity: 0.733

caatattaatatcttcaatccaattggact	CRISPR spacer
aaatattaagatcttgaatccaataaaaaa	Protospacer
 ******** ***** ******** ..*

21. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to KY065471 (Streptococcus phage IPP30, complete genome) position: , mismatch: 8, identity: 0.733

caatattaatatcttcaatccaattggact	CRISPR spacer
ctatataaatatcttcaatgcaatttttaa	Protospacer
* **** ************ *****

22. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to KY065461 (Streptococcus phage IPP20, complete genome) position: , mismatch: 8, identity: 0.733

caatattaatatcttcaatccaattggact	CRISPR spacer
ctatataaatatcttcaatgcaatttttaa	Protospacer
* **** ************ *****

23. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to KY065470 (Streptococcus phage IPP29, complete genome) position: , mismatch: 8, identity: 0.733

caatattaatatcttcaatccaattggact	CRISPR spacer
ctatataaatatcttcaatgcaatttttaa	Protospacer
* **** ************ *****

24. spacer 1.14|438845|30|NZ_CP021487|CRISPRCasFinder matches to AP014440 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S30-C70, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 8, identity: 0.733

caatattaatatcttcaatccaattggact	CRISPR spacer
tttcattaatatcttctatccaattaaatt	Protospacer
.  .************ ********..*.*

25. spacer 1.15|438911|30|NZ_CP021487|CRISPRCasFinder matches to MN694669 (Marine virus AFVG_250M354, complete genome) position: , mismatch: 8, identity: 0.733

ttgcaatcggaaaagcagcaggtattccag	CRISPR spacer
atgcaataggaaaagcagctggtataaatt	Protospacer
 ****** *********** *****

26. spacer 1.15|438911|30|NZ_CP021487|CRISPRCasFinder matches to NZ_CP012641 (Massilia sp. WG5 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.733

ttgcaatcggaaaagcagcaggtattccag	CRISPR spacer
aacggatcggcaaagcagccggtattccgg	Protospacer
    .***** ******** ********.*

27. spacer 1.15|438911|30|NZ_CP021487|CRISPRCasFinder matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 8, identity: 0.733

ttgcaatcggaaaagcagcaggtattccag	CRISPR spacer
cgaggatcggtaaagcatcaggtattccgg	Protospacer
. . .***** ****** **********.*

28. spacer 1.1|438448|31|NZ_CP021487|PILER-CR,CRT matches to NC_048053 (Dickeya phage vB_DsoM_JA29, complete genome) position: , mismatch: 9, identity: 0.71

taatttagagctgtatttgaataagcaccct	CRISPR spacer
taatttagacctgtgtttgaatatagcttat	Protospacer
********* ****.******** .  .. *

29. spacer 1.1|438448|31|NZ_CP021487|PILER-CR,CRT matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 9, identity: 0.71

taatttagagctgtatttgaataagcaccct	CRISPR spacer
taatttagacctgtgtttgaatatagcttat	Protospacer
********* ****.******** .  .. *

30. spacer 1.1|438448|31|NZ_CP021487|PILER-CR,CRT matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 9, identity: 0.71

taatttagagctgtatttgaataagcaccct	CRISPR spacer
taatttagacctgtgtttgaatatagcttat	Protospacer
********* ****.******** .  .. *

31. spacer 1.1|438448|31|NZ_CP021487|PILER-CR,CRT matches to MH460460 (Dickeya phage vB_DsoM_JA13, complete genome) position: , mismatch: 9, identity: 0.71

taatttagagctgtatttgaataagcaccct	CRISPR spacer
taatttagacctgtgtttgaatatagcttat	Protospacer
********* ****.******** .  .. *

32. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to KY065458 (Streptococcus phage IPP17, complete genome) position: , mismatch: 9, identity: 0.71

ccaatattaatatcttcaatccaattggact	CRISPR spacer
tctatataaatatcttcaatgcaatttttaa	Protospacer
.* **** ************ *****

33. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to MK448914 (Streptococcus phage Javan348, complete genome) position: , mismatch: 9, identity: 0.71

ccaatattaatatcttcaatccaattggact	CRISPR spacer
tctatataaatatcttcaatgcaatttttaa	Protospacer
.* **** ************ *****

34. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to KY065462 (Streptococcus phage IPP21, complete genome) position: , mismatch: 9, identity: 0.71

ccaatattaatatcttcaatccaattggact	CRISPR spacer
tctatataaatatcttcaatgcaatttttaa	Protospacer
.* **** ************ *****

35. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to KY065454 (Streptococcus phage IPP12, complete genome) position: , mismatch: 9, identity: 0.71

ccaatattaatatcttcaatccaattggact	CRISPR spacer
tctatataaatatcttcaatgcaatttttaa	Protospacer
.* **** ************ *****

36. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to KY065471 (Streptococcus phage IPP30, complete genome) position: , mismatch: 9, identity: 0.71

ccaatattaatatcttcaatccaattggact	CRISPR spacer
tctatataaatatcttcaatgcaatttttaa	Protospacer
.* **** ************ *****

37. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to KY065461 (Streptococcus phage IPP20, complete genome) position: , mismatch: 9, identity: 0.71

ccaatattaatatcttcaatccaattggact	CRISPR spacer
tctatataaatatcttcaatgcaatttttaa	Protospacer
.* **** ************ *****

38. spacer 1.7|438844|31|NZ_CP021487|PILER-CR,CRT matches to KY065470 (Streptococcus phage IPP29, complete genome) position: , mismatch: 9, identity: 0.71

ccaatattaatatcttcaatccaattggact	CRISPR spacer
tctatataaatatcttcaatgcaatttttaa	Protospacer
.* **** ************ *****

39. spacer 1.8|438449|30|NZ_CP021487|CRISPRCasFinder matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 9, identity: 0.7

aatttagagctgtatttgaataagcaccct	CRISPR spacer
ccatacgagctgtatttgaatcagcacagg	Protospacer
   *  *************** *****

40. spacer 1.8|438449|30|NZ_CP021487|CRISPRCasFinder matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

aatttagagctgtatttgaataagcaccct	CRISPR spacer
ccatacgagctgtatttgaatcagcacagg	Protospacer
   *  *************** *****

41. spacer 1.9|438515|30|NZ_CP021487|CRISPRCasFinder matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 9, identity: 0.7

agcatgtcggcactcgtcccgcctacccgt	CRISPR spacer
acggcctcggcactcgtcacgcctaccttc	Protospacer
*  .. ************ ********. .

42. spacer 1.16|438910|31|NZ_CP021487|CRT matches to MN694669 (Marine virus AFVG_250M354, complete genome) position: , mismatch: 9, identity: 0.71

cttgcaatcggaaaagcagcaggtattccag	CRISPR spacer
gatgcaataggaaaagcagctggtataaatt	Protospacer
  ****** *********** *****

43. spacer 1.16|438910|31|NZ_CP021487|CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 9, identity: 0.71

cttgcaatcggaaaagcagcaggtattccag	CRISPR spacer
acgaggatcggtaaagcatcaggtattccgg	Protospacer
 . . .***** ****** **********.*

44. spacer 1.16|438910|31|NZ_CP021487|CRT matches to NZ_CP012641 (Massilia sp. WG5 plasmid unnamed 1, complete sequence) position: , mismatch: 9, identity: 0.71

cttgcaatcggaaaagcagcaggtattccag	CRISPR spacer
gaacggatcggcaaagcagccggtattccgg	Protospacer
     .***** ******** ********.*

45. spacer 1.12|438713|30|NZ_CP021487|CRISPRCasFinder matches to NC_008208 (Aeromonas phage 25, complete genome) position: , mismatch: 10, identity: 0.667

gttcccacatgagtgattactggaatgcgc	CRISPR spacer
taaaacacctgagtgattactggaataaaa	Protospacer
     *** *****************. .

46. spacer 1.12|438713|30|NZ_CP021487|CRISPRCasFinder matches to DQ529280 (Aeromonas salmonicida bacteriophage 25, complete genome) position: , mismatch: 10, identity: 0.667

gttcccacatgagtgattactggaatgcgc	CRISPR spacer
taaaacacctgagtgattactggaataaaa	Protospacer
     *** *****************. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

451985 : 459659

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138492733.1\|451985_453101_+	peptide chain release factor 2	B5LLF2	Mycobacterium_phage	1.4e-05	51.6
WP_065124504.1\|453113_453818_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.6e-40	39.2
WP_005916145.1\|453789_455178_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	2.6e-25	31.0
WP_087614871.1\|455405_457193_+	phosphate ABC transporter permease subunit PstC	M4QRU1	Synechococcus_phage	3.8e-08	27.7
WP_008841839.1\|457189_458077_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_065124506.1\|458081_458888_+	phosphate ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.5e-09	43.2
WP_008841837.1\|458900_459659_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.5e-17	27.9

DBSCAN-SWA_2

516678 : 526163

Enterococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065124524.1\|516678_518106_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	8.5e-11	26.8
WP_008841791.1\|518116_518692_-	ABC superfamily ATP-binding cassette transporter membrane protein	NA	NA	NA	NA
WP_002831168.1\|519141_519882_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-17	31.9
WP_065124525.1\|520404_522555_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	4.7e-255	59.4
WP_065124526.1\|522565_523153_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A288TZV3	Enterococcus_phage	1.0e-50	56.4
WP_065124527.1\|523167_523944_+	Fe-S cluster assembly ATPase SufC	W5SAS9	Pithovirus	1.1e-09	25.9
WP_065124528.1\|523924_524986_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_065124529.1\|524987_526163_+	cysteine desulfurase	Q2XUY6	environmental_halophage	5.2e-83	41.2

DBSCAN-SWA_3

850567 : 902055

Lactobacillus_phage(59.26%)

tRNA,holin,plate,terminase,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005916670.1\|850567_851305_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_005916672.1\|851485_852151_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.7e-20	32.0
WP_004165726.1\|852134_852890_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_002831503.1\|853005_853377_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_065124819.1\|853611_854202_+	hypothetical protein	NA	NA	NA	NA
WP_002831506.1\|854499_854826_-	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	1.2e-05	34.3
WP_065124818.1\|854847_855180_-	hypothetical protein	NA	NA	NA	NA
WP_002831508.1\|855576_856026_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_005916684.1\|856038_856998_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_002831510.1\|857024_857261_+	acyl carrier protein	NA	NA	NA	NA
WP_065124817.1\|857287_858232_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_065124816.1\|858316_859045_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	5.0e-07	41.6
WP_065124815.1\|859060_860287_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_065124814.1\|860291_860717_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_002831515.1\|860728_861139_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_002831516.1\|861155_862523_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_008842117.1\|862512_863337_+	hypothetical protein	NA	NA	NA	NA
WP_002831518.1\|863353_864121_+	hypothetical protein	NA	NA	NA	NA
WP_065124813.1\|864137_864896_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_065124812.1\|866296_867103_-	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_144235586.1\|867104_867956_-	hypothetical protein	NA	NA	NA	NA
WP_081276412.1\|867970_869167_-	DUF805 domain-containing protein	D6PSS5	Lactobacillus_phage	4.6e-18	39.1
WP_065124811.1\|869239_869647_-	ImmA/IrrE family metallo-endopeptidase	O03904	Lactobacillus_phage	1.4e-11	34.9
WP_008840853.1\|869658_870021_-	helix-turn-helix transcriptional regulator	A0A0P0IZG9	Lactobacillus_phage	4.2e-15	40.6
WP_065124810.1\|870163_870394_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_008840855.1\|870390_870528_+	hypothetical protein	NA	NA	NA	NA
WP_065124809.1\|870530_870755_-	hypothetical protein	NA	NA	NA	NA
WP_065124808.1\|870821_871037_+	hypothetical protein	NA	NA	NA	NA
WP_065124825.1\|871139_871586_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065124807.1\|871586_871868_+	hypothetical protein	NA	NA	NA	NA
WP_157420393.1\|871869_872013_+	hypothetical protein	NA	NA	NA	NA
WP_065124806.1\|872105_872999_+	DUF1351 domain-containing protein	U5U3Y3	Lactobacillus_phage	2.9e-25	31.1
WP_065124805.1\|873001_873838_+	hypothetical protein	Q9G0C9	Lactococcus_phage	1.2e-12	42.7
WP_065124804.1\|873830_874664_+	helix-turn-helix domain-containing protein	A0A097BYA5	Leuconostoc_phage	2.9e-43	53.5
WP_021361655.1\|874668_875391_+	hypothetical protein	E9LUU3	Lactobacillus_phage	4.1e-86	67.0
WP_157421136.1\|875347_875743_+	hypothetical protein	NA	NA	NA	NA
WP_065124802.1\|875745_876192_+	single-stranded DNA-binding protein	A0A2D1GPB7	Lactobacillus_phage	2.8e-37	62.5
WP_065124801.1\|876202_876550_+	DUF1642 domain-containing protein	NA	NA	NA	NA
WP_065124800.1\|876546_876771_+	hypothetical protein	NA	NA	NA	NA
WP_153903504.1\|876790_876949_+	hypothetical protein	NA	NA	NA	NA
WP_065124799.1\|877288_877720_+	hypothetical protein	D6PSV8	Lactobacillus_phage	2.5e-06	27.4
WP_065124798.1\|878332_879001_+	hypothetical protein	NA	NA	NA	NA
WP_032540563.1\|879069_879756_+\|terminase	terminase	V5URT8	Oenococcus_phage	2.5e-16	42.5
WP_021361666.1\|879739_881053_+\|terminase	PBSX family phage terminase large subunit	A0A286QNX6	Streptococcus_phage	3.3e-150	60.5
WP_081276410.1\|882589_883723_+	hypothetical protein	O03929	Lactobacillus_phage	1.8e-51	38.1
WP_021361667.1\|883822_884395_+	phage minor structural GP20 family protein	Q9T1B8	Listeria_phage	3.5e-24	39.0
WP_065124797.1\|884407_885277_+\|capsid	capsid protein	U3PDP8	Lactobacillus_phage	8.6e-107	66.8
WP_065124796.1\|885347_885764_+	hypothetical protein	U3PCQ2	Lactobacillus_phage	1.2e-10	31.5
WP_065124795.1\|885760_886111_+\|capsid	capsid protein	O03932	Lactobacillus_phage	3.9e-26	57.1
WP_065124794.1\|886110_886455_+	hypothetical protein	O03933	Lactobacillus_phage	1.4e-15	43.2
WP_065124793.1\|886454_886850_+	hypothetical protein	NA	NA	NA	NA
WP_065124791.1\|887478_887946_+	Ig domain-containing protein	A0A1D6Z291	Staphylococcus_phage	2.7e-22	47.0
WP_065124790.1\|888021_888414_+	hypothetical protein	NA	NA	NA	NA
WP_065124789.1\|888423_889044_+	hypothetical protein	O03936	Lactobacillus_phage	7.1e-31	41.6
WP_065124788.1\|889077_894195_+	tape measure protein	O03937	Lactobacillus_phage	7.5e-25	29.4
WP_065124787.1\|894196_895021_+\|tail	phage tail family protein	M4ZS20	Bacillus_phage	3.0e-16	25.9
WP_081276409.1\|895026_896148_+	hypothetical protein	O03938	Lactobacillus_phage	2.8e-78	42.1
WP_065124785.1\|896140_896371_+	hypothetical protein	NA	NA	NA	NA
WP_065124784.1\|896351_896762_+	hypothetical protein	NA	NA	NA	NA
WP_065124783.1\|896751_897789_+\|plate	BppU family phage baseplate upper protein	D2KRC4	Lactobacillus_phage	3.4e-17	25.9
WP_065124782.1\|897801_898623_+	collagen-like protein	NA	NA	NA	NA
WP_065124781.1\|898638_900129_+	hypothetical protein	NA	NA	NA	NA
WP_157421138.1\|900192_900450_+	hypothetical protein	NA	NA	NA	NA
WP_065124779.1\|900449_900704_+\|holin	holin	NA	NA	NA	NA
WP_065124778.1\|900687_902055_+	1,4-beta-N-acetylmuramidase	A0A1X9IGI4	Lactococcus_phage	2.7e-78	60.5

DBSCAN-SWA_4

1107355 : 1114676

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008841054.1\|1107355_1108201_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	2.1e-17	35.6
WP_008841056.1\|1108597_1109080_-	dihydrofolate reductase	A0A076GDN3	Bacillus_phage	3.6e-22	39.1
WP_008841057.1\|1110051_1111947_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.9e-50	30.3
WP_065124147.1\|1111949_1113158_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	2.9e-44	34.5
WP_008841059.1\|1113273_1114143_+	YitT family protein	M1Q1P6	Streptococcus_phage	1.2e-55	37.8
WP_065124148.1\|1114205_1114676_-	nucleoside 2-deoxyribosyltransferase	A0A1G5S9Z4	Enterococcus_phage	2.2e-16	39.9

DBSCAN-SWA_5

1180967 : 1241158

Lactobacillus_phage(72.97%)

transposase,holin,protease,head,integrase,portal,terminase,capsid,tail

attL 1198738:1198768|attR 1241290:1241320

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144235580.1\|1180967_1182251_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.6e-45	31.8
WP_065124177.1\|1182301_1183060_-	hypothetical protein	NA	NA	NA	NA
WP_065124178.1\|1183157_1183682_-	hypothetical protein	NA	NA	NA	NA
WP_065124179.1\|1183826_1184495_-	hypothetical protein	NA	NA	NA	NA
WP_144235579.1\|1184495_1184999_-	hypothetical protein	NA	NA	NA	NA
WP_065124181.1\|1184979_1186242_-	hypothetical protein	NA	NA	NA	NA
WP_065124182.1\|1186618_1187113_-	hypothetical protein	A0A097BY45	Enterococcus_phage	6.5e-19	34.8
WP_065124183.1\|1187157_1187364_-	hypothetical protein	NA	NA	NA	NA
WP_065124184.1\|1187366_1187645_-	hypothetical protein	NA	NA	NA	NA
WP_065124185.1\|1187641_1187827_-	hypothetical protein	NA	NA	NA	NA
WP_157420395.1\|1187811_1187973_-	hypothetical protein	NA	NA	NA	NA
WP_065124186.1\|1188123_1188348_-	hypothetical protein	NA	NA	NA	NA
WP_065124188.1\|1188552_1188822_-	hypothetical protein	NA	NA	NA	NA
WP_065124190.1\|1189001_1189937_-	DnaD domain protein	Q9AZA0	Lactobacillus_prophage	2.8e-39	49.5
WP_065124191.1\|1189953_1190415_-	single-stranded DNA-binding protein	U5U726	Lactobacillus_phage	1.7e-37	66.2
WP_065124192.1\|1190558_1191371_+	DUF4393 domain-containing protein	E9LUL1	Lactobacillus_phage	2.9e-24	30.9
WP_065124193.1\|1191350_1191596_-	hypothetical protein	NA	NA	NA	NA
WP_065124194.1\|1191649_1191988_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_065124195.1\|1192950_1193448_+	hypothetical protein	NA	NA	NA	NA
WP_065124196.1\|1193410_1193617_-	hypothetical protein	NA	NA	NA	NA
WP_065124197.1\|1193624_1194074_-	hypothetical protein	NA	NA	NA	NA
WP_065124198.1\|1194070_1194304_-	hypothetical protein	A0A0P0ID24	Lactobacillus_phage	1.0e-06	43.5
WP_065124199.1\|1194573_1194954_+	helix-turn-helix transcriptional regulator	E3W8B9	Leuconostoc_phage	2.8e-14	39.3
WP_157420397.1\|1194966_1195104_+	hypothetical protein	NA	NA	NA	NA
WP_157420399.1\|1195135_1195384_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_065124200.1\|1195439_1195976_+	hypothetical protein	Q38183	Lactococcus_phage	1.4e-35	47.6
WP_065124201.1\|1196137_1196692_-	hypothetical protein	NA	NA	NA	NA
WP_065124202.1\|1196832_1197141_+	hypothetical protein	NA	NA	NA	NA
WP_065124203.1\|1197285_1198434_+\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	4.8e-89	48.2
1198738:1198768	attL	NA	NA	NA	NA
WP_024862287.1\|1199843_1200086_-	hypothetical protein	NA	NA	NA	NA
WP_024862286.1\|1200203_1200563_-\|holin	holin	A0A2K9VCG4	Lactobacillus_phage	5.4e-15	62.5
WP_002830385.1\|1200578_1200842_-\|holin	holin	E9LUR9	Lactobacillus_phage	8.8e-31	82.8
WP_036672440.1\|1200841_1201972_-	LysM peptidoglycan-binding domain-containing protein	O03950	Lactobacillus_phage	2.4e-45	64.4
WP_002830387.1\|1202016_1202376_-	hypothetical protein	E9LUR7	Lactobacillus_phage	1.1e-44	78.2
WP_002830389.1\|1202390_1202639_-	hypothetical protein	NA	NA	NA	NA
WP_002830391.1\|1202680_1202890_-	hypothetical protein	NA	NA	NA	NA
WP_002830394.1\|1202882_1203110_-	hypothetical protein	NA	NA	NA	NA
WP_065124204.1\|1210529_1215380_-	transglycosylase SLT domain-containing protein	A0A2P0ZLG0	Lactobacillus_phage	9.8e-293	51.8
WP_002831798.1\|1215409_1215595_-	hypothetical protein	NA	NA	NA	NA
WP_002831799.1\|1215639_1216014_-	hypothetical protein	A0A2P0ZLH4	Lactobacillus_phage	3.2e-58	96.0
WP_002831800.1\|1216090_1216780_-\|tail	phage tail protein	A0A2P0ZLH1	Lactobacillus_phage	1.0e-107	93.2
WP_065124205.1\|1216793_1217174_-	DUF806 family protein	A0A2P0ZLF4	Lactobacillus_phage	4.1e-61	92.9
WP_087614879.1\|1217136_1217580_-	hypothetical protein	A0A2P0ZLE6	Lactobacillus_phage	2.8e-61	88.4
WP_002831805.1\|1217582_1217930_-\|head	phage head closure protein	A0A2P0ZLF0	Lactobacillus_phage	1.8e-39	67.0
WP_002831807.1\|1217919_1218252_-\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	1.0e-44	85.2
WP_002831808.1\|1218324_1219557_-\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	4.1e-211	92.9
WP_065124206.1\|1219556_1220300_-\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	9.2e-126	95.1
WP_065124207.1\|1220277_1221441_-\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	1.4e-208	93.2
WP_065124209.1\|1221626_1223525_-\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	0.0e+00	96.5
WP_065124210.1\|1223527_1223977_-\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	3.0e-79	97.3
WP_081276383.1\|1224180_1224648_-	HNH endonuclease	E9LUP7	Lactobacillus_phage	1.8e-82	94.2
WP_065124212.1\|1225154_1225598_-	hypothetical protein	NA	NA	NA	NA
WP_036672512.1\|1225798_1225987_-	hypothetical protein	NA	NA	NA	NA
WP_065124213.1\|1226173_1226422_-	hypothetical protein	A0A2K9VC51	Lactobacillus_phage	3.7e-23	59.5
WP_036672515.1\|1226808_1227054_-	hypothetical protein	NA	NA	NA	NA
WP_058121180.1\|1227054_1227348_-	hypothetical protein	NA	NA	NA	NA
WP_002830736.1\|1227514_1227886_-	hypothetical protein	NA	NA	NA	NA
WP_065124214.1\|1228064_1228700_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_065124215.1\|1228699_1228927_-	hypothetical protein	NA	NA	NA	NA
WP_065124216.1\|1228926_1229358_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0IXM5	Lactobacillus_phage	1.5e-40	55.6
WP_087614880.1\|1229362_1229770_-	hypothetical protein	NA	NA	NA	NA
WP_065124218.1\|1229769_1231002_-	DNA helicase	A0A0P0IXJ2	Lactobacillus_phage	7.7e-61	36.6
WP_065124219.1\|1230991_1231786_-	hypothetical protein	A0A0A0RQ10	Bacillus_phage	1.0e-34	53.4
WP_065124220.1\|1231806_1232334_-	DUF669 domain-containing protein	Q8W5V8	Listeria_phage	1.4e-30	42.8
WP_065124221.1\|1232333_1233089_-	AAA family ATPase	B4XYS4	Lactobacillus_phage	4.4e-67	55.3
WP_081276381.1\|1233089_1233545_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_065124223.1\|1233771_1234389_+	hypothetical protein	NA	NA	NA	NA
WP_065124224.1\|1234658_1234988_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_002830432.1\|1235001_1235724_-	phage regulatory protein	D2IYT0	Enterococcus_phage	2.2e-55	51.1
WP_065124225.1\|1235737_1235947_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065124226.1\|1236202_1236544_+	helix-turn-helix transcriptional regulator	A0A097QQ00	Enterococcus_phage	5.1e-15	37.1
WP_036672412.1\|1236552_1236960_+	ImmA/IrrE family metallo-endopeptidase	A0A0M7RF74	Lactobacillus_phage	3.1e-06	32.8
WP_002830434.1\|1237022_1238150_+	hypothetical protein	NA	NA	NA	NA
WP_036672414.1\|1238296_1238494_+	hypothetical protein	NA	NA	NA	NA
WP_002830435.1\|1238900_1239902_+	Abi family protein	M1PS09	Streptococcus_phage	1.2e-48	35.7
WP_002830436.1\|1240042_1241158_+\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	2.2e-99	51.9
1241290:1241320	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1607569 : 1616691

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024862964.1\|1607569_1608580_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	5.1e-34	36.9
WP_002832332.1\|1608586_1608922_-	hypothetical protein	NA	NA	NA	NA
WP_024862963.1\|1608937_1609567_-	dTMP kinase	M1PSC7	Streptococcus_phage	3.5e-49	50.7
WP_002832336.1\|1609992_1610592_-	recombination protein RecR	NA	NA	NA	NA
WP_002832337.1\|1610615_1610930_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_065124643.1\|1610945_1612682_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	6.2e-56	40.0
WP_036685559.1\|1612891_1613383_-	nucleoside deaminase	A0A2H4PQS8	Staphylococcus_phage	3.1e-05	31.4
WP_002832340.1\|1613375_1613981_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_002832341.1\|1614202_1614433_+	glutaredoxin-like protein NrdH	A0A0M7REK7	Lactobacillus_phage	1.6e-12	46.2
WP_008841876.1\|1614525_1616691_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	3.3e-256	60.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021487

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection