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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021507 Bacillus subtilis subsp. subtilis strain SRCM101441 chromosome, complete genome 3 crisprs csa3,cas3,DEDDh,WYL,DinG 0 1 18 0
NZ_CP021508 Bacillus subtilis subsp. subtilis strain SRCM101441 plasmid pBL1441-1 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP021507
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021507_1 839464-839685 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021507_2 980602-980707 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021507_3 3046527-3046634 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021507_3 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder 3046551-3046610 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_CP021507_3 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder 3046551-3046610 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_CP021507_3 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder 3046551-3046610 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_CP021507_3 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder 3046551-3046610 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_CP021507_3 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder 3046551-3046610 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_CP021507_3 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder 3046551-3046610 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_CP021507_3 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder 3046551-3046610 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_CP021507_3 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder 3046551-3046610 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_CP021507_3 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder 3046551-3046610 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 3.1|3046551|60|NZ_CP021507|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 653372 : 731730 92 uncultured_Caudovirales_phage(28.89%) head,plate,terminase,protease,integrase,capsid,tRNA,coat,holin,transposase,tail,portal attL 663756:663774|attR 707017:707035
DBSCAN-SWA_2 750430 : 758796 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 806454 : 872689 55 Tupanvirus(20.0%) coat,transposase NA
DBSCAN-SWA_4 1268288 : 1316256 54 Planktothrix_phage(44.44%) tRNA,transposase,coat NA
DBSCAN-SWA_5 1358283 : 1477135 124 Bacillus_phage(22.0%) plate,terminase,protease,tRNA,holin,transposase,tail,portal NA
DBSCAN-SWA_6 1864934 : 1917485 56 Bacillus_phage(47.06%) tRNA,protease,transposase,coat NA
DBSCAN-SWA_7 2097677 : 2104910 9 Bacillus_phage(85.71%) holin NA
DBSCAN-SWA_8 2322019 : 2328114 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_9 2578558 : 2619936 44 uncultured_Caudovirales_phage(28.57%) transposase,holin,coat NA
DBSCAN-SWA_10 2700812 : 2754284 56 uncultured_Mediterranean_phage(12.5%) tRNA,coat,protease NA
DBSCAN-SWA_11 3009941 : 3060933 44 Staphylococcus_phage(20.0%) coat,transposase,holin NA
DBSCAN-SWA_12 3193181 : 3289891 118 Bacillus_phage(36.96%) head,plate,protease,terminase,portal,capsid,integrase,coat,transposase,tail,holin attL 3233873:3233894|attR 3271153:3271174
DBSCAN-SWA_13 3371658 : 3439224 83 Bacillus_phage(63.83%) head,plate,protease,terminase,portal,capsid,integrase,transposase,tail,holin attL 3382726:3382748|attR 3422389:3422411
DBSCAN-SWA_14 3557617 : 3604360 43 Staphylococcus_phage(22.22%) protease,transposase,holin NA
DBSCAN-SWA_15 3782655 : 3803394 19 Shigella_phage(25.0%) tRNA,transposase,bacteriocin NA
DBSCAN-SWA_16 3813406 : 3856250 41 Enterobacteria_phage(18.18%) tRNA,protease,transposase,coat NA
DBSCAN-SWA_17 3868517 : 3916928 44 Streptococcus_phage(50.0%) protease,lysis,tRNA,transposase,holin NA
DBSCAN-SWA_18 4076452 : 4131965 50 Klosneuvirus(21.43%) protease,transposase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage