CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP017576	Bacillus thuringiensis strain SCG04-02 plasmid PSCG5, complete sequence	0 crisprs	NA	0	0
NZ_CP017573	Bacillus thuringiensis strain SCG04-02 plasmid PSCG61, complete sequence	0 crisprs	NA	0	0
NZ_CP017575	Bacillus thuringiensis strain SCG04-02 plasmid PSCG11, complete sequence	0 crisprs	NA	0	0
NZ_CP017574	Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence	1 crisprs	csa3,DEDDh,cas9,cas14j,RT	1	2
NZ_CP017577	Bacillus thuringiensis strain SCG04-02, complete genome	3 crisprs	DinG,cas14k,csa3,cas3,RT,Cas14u_CAS-V,WYL,c2c9_V-U4,DEDDh	2	6

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017574_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017574_1

233155-233340

Orphan

Consensus_repeat	Method
GAAACCAGAACAGAAGCCAGAGCAGAAACC	CRT

3 spacers

The CRISPR arrays of NZ_CP017574_1

>merge|NZ_CP017574|1|233155-233340|CRT
GAAACCAGAACAGAAACCAGAGCAGAAACCAGAACAGAAGCCAGAGCAGAAACCAGAACAGAAGCCAGAGCAGAAACCAGAGCAAAAGCCAGAACAGAAGCCAGAACAGAAACCAGAACAGAAGCCAGAGCAGAAACCAGAGCAAAAGCCAGAGCAGAAACCAGAACAGAAGCAAGCAGAAACAAC

>NZ_CP017574|1|1|233155-233340|CRT
GAAACCAGAACAGAAACCAGAGCAGAAACC	AGAACAGAAGCCAGAGCA
GAAACCAGAACAGAAGCCAGAGCAGAAACC	AGAGCAAAAGCCAGAACAGAAGCCAGAACA
GAAACCAGAACAGAAGCCAGAGCAGAAACC	AGAGCAAAAGCCAGAGCA
GAAACCAGAACAGAAGCAAGCAGAAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017574.1\|WP_065212428.1\|216830_217670_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_065212417.1\|236690_237215_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_000939328.1\|236095_236284_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_087635070.1\|229025_230789_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236545
NZ_CP017574.1\|WP_081283917.1\|222640_223882_+\|DUF3854-domain-containing-protein	unknown	unknown	gnl\|CDD\|372412
NZ_CP017574.1\|WP_000533694.1\|224377_224608_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_065212425.1\|225782_227519_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_029948450.1\|217928_218171_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP017574.1\|WP_065212420.1\|233678_234128_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_000695112.1\|235550_236072_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_081283915.1\|234726_235281_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP017574.1\|WP_065212416.1\|238558_239554_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_065212415.1\|239550_240405_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163448
NZ_CP017574.1\|WP_065212418.1\|236356_236668_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_065212436.1\|237858_238542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373078
NZ_CP017574.1\|WP_065212427.1\|218172_219723_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_000565596.1\|237227_237827_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017574.1\|WP_065212426.1\|224630_225602_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|223642
NZ_CP017574.1\|WP_081283916.1\|220764_222606_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP017574.1\|WP_065212424.1\|227544_228540_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511

Protein	Function_ID	Function_description	E-value
NZ_CP017574.1\|WP_081283917.1\|222640_223882_+\|DUF3854-domain-containing-protein	gnl\|CDD\|372412	pfam12965, DUF3854, Domain of unknown function (DUF3854). A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This domain is likely to be related to the Toprim domain.	0.00132274
NZ_CP017574.1\|WP_087635070.1\|229025_230789_+\|hypothetical-protein	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.52078e-16
NZ_CP017574.1\|WP_029948450.1\|217928_218171_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.99552e-10
NZ_CP017574.1\|WP_065212436.1\|237858_238542_+\|hypothetical-protein	gnl\|CDD\|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	4.69022e-06
NZ_CP017574.1\|WP_065212415.1\|239550_240405_+\|hypothetical-protein	gnl\|CDD\|163448	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.	3.94468e-16
NZ_CP017574.1\|WP_065212426.1\|224630_225602_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|223642	COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription].	3.43827e-38
NZ_CP017574.1\|WP_081283916.1\|220764_222606_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	5.0039e-118
NZ_CP017574.1\|WP_065212424.1\|227544_228540_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	3.95639e-54
NZ_CP017574.1\|WP_081283915.1\|234726_235281_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.32368e-44

>NZ_CP017574.1|WP_087635070.1|229025_230789_+|hypothetical-protein
MQNNRKRNVIKERIRQEKERRERLLAEEEEQYEDVNKDPISEQIQQEHLEQPRNQREESVNVNLPKNESSNSNPALDWITTIQNQAGTSENDLKIKEAEEAIEREEEVRKQAEAEARRKAEEEAKERAEAEARRKAEEEARERAEAEARRKAEEEARKQAEAEARRKAEEEAREREEVEARRKAEEEARKRAEAEARRKAEEEARKQAEAEARRKAEEEARKQAEAEARRKAEEEAREREEVEARRKAEEEARKQAEAEARRKAEEEAREREEVEARRKAEEEARKRAEAEARRKAEEEARKRVEAQRKEEEKKLEEVRKRRLEEEKKIKDAQKRQKIVVAKSEPESDEINLNNERNQPNENKFEQEEKVAIDKKGILNNMKKYKYAIIGVASIVLLVVAGFAFSNMKNSQAASANNVNSLEVNANLINGLRLSAVQKYQDAALEFDKVDYKKLGKEDKKAVLFTYLLSGKAQKAIDLEQDFAESVVSYYIAVDNLKKVKELKTKNPLINFEIAALDNKHEEVIKLRDQVPLDGRREGIIVNSYLKLNKSEEAKKFAQKVGNKDLLEKINNSTPNSSATSVATISAG
>NZ_CP017574.1|WP_065212424.1|227544_228540_+|DNA-polymerase-III-subunit-delta
MPTYVLYGKETYLLEDKVKGIIQEFTNNTKEDLNVVEFDMEEETIQTAINEAEEYSFFGGKKIVITRNANFLTSDNNKELNHDVNYILSFLEKKMEDSVLILIVNQEKLDQRKKVVKELKKKAIIFEAKTLNQAETATWILKYANNKNIQISNESVQELIVSVGCDLRCLKNEVDKLYAYSNGGKEITIDAIAAVTVKSLEQSIFNLSEYLLSQDTNKAIELFNELILKKHNPIQILATLIYKFDMLFKIKVLQNCTKDKELIGILGCHPYVLQKSKEQIKGFNLSKDDLGNILCILTEADNNMKMGKDSYLTMEISITKISDVLRTSLII
>NZ_CP017574.1|WP_065212425.1|225782_227519_+|hypothetical-protein
MQKREKVFSLRKELGKKLKNNGFSKEFMDIQLKFRKPINQYSTAELKEETLKALIKYYRRKIEQVTSYKELEEIIEGIPFSRQSIEISEIEAEGYSSAIHLLTDINPKLKERRNDYKERFTVRNFKELLPINIKVKKFSNNKQQFLEKTGIAFGKMPIRKSAHLRSYRIKTDYKSYRLIDLGTLLAEAFLENSLEIFIISNPELYEYQGIKFCFENKMENGNVVDVYVDMKIDNMNAEGRMVFEKLKKFKYISANAELNIIPVVDETRSFYKLYLNSEYNVIHNFNDLHYKIMLREFIDRQENIKKHIKIRGDKATVYARFFETKKHINKSTFKVMKNNCFKENFGYVELDNDVDLMKFKKIEREFLEFKKVVPLPELNDHSFRVKKLGRIKADGVYVSSPVKALIVDIAAPNSFAHECLHLIDYTVMKDSTLLSEGIRFRPIVDRYIELVSKKVDSLENGDAFKSQWFSNKKYNKDYYLDYSEIFARAGEMYLFYIAKIETSFLYDNYNSIVFPKDDELMNMISDYFKWLFLKLKAQLPKKERSIMKILNDTKSSVDTLSAAPLEYVINSDGQLTLF
>NZ_CP017574.1|WP_065212426.1|224630_225602_+|sigma-70-family-RNA-polymerase-sigma-factor
MNQSYSRINRDESLNKTITQGTAAVTIKPMPNTEENNNNIRGIGNYKVLSKEESLHLFKRYKHGEKDLRDYLFHVNEGLVLSIARNFKNKHPDIEFDDLVQEGNEGMLRAMEDFNPDLGYCFSTYAFWWIQKSMVGIIRKKKSGPFKIPTHVNQFNLKYVELEDKYLQRYNRTPSVEEVVKELNVTRETVIRHKVYYKRATTMTLDIDTINEDVGISTPFFDDKSAIPSTNEMIIEDLNYEIWLIFDEVLNPKQKMVLNLCFGLLDGKVYLHKEIAKALMITTERVSQIKDEAIKKLKKCQHKSEIFNLLHEKMKVMDELNMA
>NZ_CP017574.1|WP_000533694.1|224377_224608_+|hypothetical-protein
MGRRVSEKKTKEQFLYERRKQLEIMEGISSICKGCDIYKELRKTKAHKEVSNTCAKECKLISSVQKETKLFLETIR
>NZ_CP017574.1|WP_081283917.1|222640_223882_+|DUF3854-domain-containing-protein
MRCRAGEKLEIASKAYLSLLVNETETKIICGRIESDTKLGEAGYLHIVNEKQKRGYDFSPDQMVKEHKKKNDYTLDVLYYMFLQELELREEHIEMLTGPERRIAIETINIRNYKSFPMKPWDVTKEIIKKAGGKTSLIVGIPGFYAKETKDGRYFTFAGRRDSLLIPQRNIYNQICGFQYRIDNPKYVTVVRDHKPSFQAAVIEQPNIIEVTYKINGKKESLFKGAVDVKEWYEIDYEGKKIGEVQLKLESKYIWVSSGGKFHGTGAGNPLPIHVAVPSRELQYWERGELIKKDNVWITEGSLKADISAENLDELLTNEEKLMYGTTVVSIPGVKVWRILIDPLKKMGVKQATFALDMDMITNPDVQRTLLECAQALYQEGISINYASWDINLGKGLDDLLLQDYIPAVEKVR
>NZ_CP017574.1|WP_081283916.1|220764_222606_+|group-II-intron-reverse-transcriptase/maturase
MKGDATLNTSLRHWEYYGMHTVFDNLYKSSTENQSFRKLYRIIISEENILLAYRSIKSNKGSKTEGTDKFTIDNYKGMTKGEFIQFIRDDLTNYKPKAVRRKMIPKPNGEKRPLGIPCMKDRLIQQMFKQVLEPIAEAKFHKHSYGFRPIRSANHAIARCASLVNRYQLNYVVDIDIRGFFDNVNHTLLMKQLWNMGIKDRIVLKIIMKMLKAPIKGEGLPSKGTPQGGILSPLLSNIVLNDLDQWVYSQWEGFKTKREYSGDNKKNRALKTTNLKEGYIVRYADDFKIFARDWKTAQKWYYAVRLYLKERLKLDISLEKSKVINLRRGYSEFLGFKICAKVKGSNNKGRLKYVMQTNIKNKKKQEIKSKVKKKIKKIQKEPIAENILNLNQYIAGIQNYFKYATNVFRELKDVSYKLSTLMYNRLKYISKKKYPLNANQTYKKRYSLTYKTWEIAGVYIYPLHDINYVVTRLLPNKYNVYTIEGRAAIYKNLDMMVNSQLEVLRKSLTLNNSIEFYDNRLSRYSMKKGRCEITERFLYAYEVHCHHYIPLHLGGDDSYNNLRIIHVDIHKLIHATRLETIEKYMKEWSLNDEMVRKINQYRKKCNLKAITMN
>NZ_CP017574.1|WP_065212427.1|218172_219723_+|hypothetical-protein
MKVLVLKSIATELKKVIEEFFPGDEIIEVTYTNIDDYNEVFAVFVDSEEIIGENGSSYIAMLRQNLRANYKICLADELDSLELDLITHPFKVVDNTPDSLHSYLQKIIMVNSRSDVGEGDQENSGSKESRDKNNEDIEIESHIVEEVKIRKLSTDKNEQDNIVQNETKAIEKYNDGNVAASKENYLEKPLEKPNDNNSKDDICSREGTPVSEEIKKETIKRESVLAISEETYEKAILNLRNYINIPVHRRKLIGEKVIGVWSPINRVGVTSFLTNLAVFMANYSISISVLEGVSNTPKLYSYVQKFLKIDERWISLSDYLINPNLTTQHIPLHYKRVTFFPFNRNNYKCFTDNIMNRYYIEGLRFFDLVFLDIPSGPMVKHTLESLKHIDELWILCNNDVYNYNLASKFITQKINPKVETKLIFIDQFEFSKPKIIQKMFESDILFEFPSIFEEVAKIQYSNRLFIEDDATFAKLKPGFEHIMNYLIPESNFKGIYNDESNVKRIWNVMKKIIINP
>NZ_CP017574.1|WP_029948450.1|217928_218171_+|helix-turn-helix-transcriptional-regulator
MEGGGRLLIDTLKPENDSEILVLCRKRLGIKQNELAKELGVTPSHLSNIENGKYELSYKMRKQLCRLLEEFNLSREQGGA
>NZ_CP017574.1|WP_065212428.1|216830_217670_-|hypothetical-protein
MFKKRKYQSLEDVHDALLAPFEKNELKYKDGKPYIPHYQARKRLIEILGVYGFSIEYPIQELYAEPSSVPPIMWARTTCKLTLDFSEWGGEKRIVYGTDAKKLNRFSNKEKNIENGVVGQICDLGDDEKSAMARAFVKACESIGIGLYLCLNPNHQQTSNTTPPSNSNYNELWNIVNNYEKALKINIDDRKEILISSYPKQRDFKKLNEKQLEFYISIIKHSAEIAVMATNSNTEKLILNELSRCCNQQFNNFKTTIGFMNEAAVEYTGSYLKQSKSAI
>NZ_CP017574.1|WP_065212420.1|233678_234128_+|hypothetical-protein
MNIVQLPNRVFKAKEEREKNEYVNYIRDVVFANCTKGEIEKFNEVLMSKKENLIKRQLSLLFFNSIVRSSLKEALYVALDAEVEFPINQEQGEKLLDFKIRKEREEVKDYFTVLEDKIINEVDDETKIQLAENYNSEDFRRFIYKFLYQ
>NZ_CP017574.1|WP_081283915.1|234726_235281_-|signal-peptidase-I
MEFDLQLKKRLISIFPILIFIIGVTLLLLRQFVFFPYKVSGVSMENTLFNNDKVLINHLSHSLEDLHRFDIVVVNSPLENTSNNKTIIKRVIGLPGDTIEYKSQQLYINGLVVKDLYAKGKTADFSLKGIYGFDKVPNDTIFILGDNREESLDSRFKEIGFVPLNNIEGKVVLRYKPLDRFVKF
>NZ_CP017574.1|WP_000695112.1|235550_236072_+|hypothetical-protein
MKIKRLFLVLGVLAMMFVFYNTFIKDEPQTDALTPIKVEDLKQKIQYDYLFEDELSQNVINDLGGQFKLIFDDIDKNGHLTIYQNKKELEMFLGNHVTTAELADEFTSDYFSTNKNYKVTYKSKPSLFNYEEPRTVTKVKKGLFLVKQNDLILEFKYVPEIDGFRISEITYLK
>NZ_CP017574.1|WP_000939328.1|236095_236284_+|hypothetical-protein
MLQIRTVIADALNIDKEVNGFLKYCDNHGKIVKEIKPGGIINREYDQGQPLVTVLVVYEEKN
>NZ_CP017574.1|WP_065212418.1|236356_236668_+|hypothetical-protein
MKIITKVAVFNYKEFENSLLEMNNRELDVDDLMVPIDLAKVLKFIRKDSFSVKELLDQNFQLELIVAAADYMRPELFENQTILDEITGNVEYADTTDEDFPFF
>NZ_CP017574.1|WP_065212417.1|236690_237215_+|hypothetical-protein
MWNDIEEFFVGNDTTGIYDMYNSFFQLIYFICSSKDLLAKANMDDYEIAIQDHDIESNSECAHINFVNALLQSINDECKFQAAFLMDEEEVYLFQLEDSVFREYNKKLFLNDTCLLQIKSNIDLKNVKDIFPDLVLISDYANEDVFYVIHEDIHDVLDTKKLNRYIDLLILIKE
>NZ_CP017574.1|WP_000565596.1|237227_237827_+|hypothetical-protein
MIDIWEGLEMDEHEENSNLTIINLISLFISMKNEGVPAELFEEVVIQKLDWNAEFYSYNGFNPYTELVEGILNCIGYLEEATVREYLECEANELFEGDFDEPIILVFIPLPSGYEMNDIKNVFKDKVIHFKEDVDNEFDNEFAFVMCSQFEYFDVFTWIELFEVVYFIKKVQEEKENFNFSLYKEEIVGRTYFDNLFKN
>NZ_CP017574.1|WP_065212436.1|237858_238542_+|hypothetical-protein
MDDLGVIKKDFKFPAVELGKSIARSISLAKEELDFEFNYDSGFIPKNLKQHLSVGTKDGIKHFYFLELEKANRKVELWRGNHKEKLTFNIVGFPKVLLVLAVLQNPKGVKSFQSAFAFAMKDEPIKLDSPLYVYPFPNVYYSGNVCMGGNKPSTIENLTAFERWFHQLPFGADMYTPDRISKDLELKNKSDVFQLFSFLDGKEFNDNWLVSYKKTYKQLVNEFKNSK
>NZ_CP017574.1|WP_065212416.1|238558_239554_+|hypothetical-protein
MSKKELDIFDYLLEENKQSEKNGAETINSLDEGTILAIQKMEEQKRASEENRASRLKEPNRSKQQQASKKEQKDNKQKPDNDAIIRDYKLWKLNNETVVKYWGNTHALIEYFSEEEILNNGKPDFMEISGEKLRERMENSGYDELVKGHVIMGYIKDKNIITVSIDMKKKGNSTKITPFFPIPQYILQTFIEHAKFYATKELELHAEVYLDQNGCYEIVFPKQKVNKYWVKPETDILMQMEKRLVLQIHSHHNMSEIPSVLDNQNEVVPNIIYVIVGRLHRYFPSIHARIYKDGLHQQVDLTKVFASPFNVNGPLEQVEVVESAIHEVDEI
>NZ_CP017574.1|WP_065212415.1|239550_240405_+|hypothetical-protein
MIQLYPFNVDIPIHIVQVGTGGTGSLVAQYVAQQMVTSRITEIKGILADADNIEEKNLRNQYFIKNEIGKKKADVLAKRYSNPFGIDLRSYSEEYIETTDLLMKLFDSLKVNNKKESIKILISCVDNNFSRQQFHQFFNEQENIVYIDTGNDAVDLIKGNPSEKTIKQQEESGYTGQTVTGLRVKGETILAPVAELYPDVLTDEDTIAPSDISCDQVIVSQPQRRITNQYSALAVNNMLNFIVNQYLIVNHHMVFHAKKGYSRAFPVTEEQRQLFNLTNKGIKE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP017574	Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence	233233-233262	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NC_014172	Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence	59732-59761	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009595	Bacillus cereus strain 3a plasmid pBFC_3, complete sequence	225450-225479	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009595	Bacillus cereus strain 3a plasmid pBFC_3, complete sequence	225498-225527	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009606	Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence	91685-91714	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009606	Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence	91733-91762	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP053994	Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence	165456-165485	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP053994	Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence	165504-165533	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP053992	Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence	148472-148501	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP053992	Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence	148520-148549	0	1.0
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NC_014172	Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence	59804-59833	1	0.967
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP017574	Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence	233293-233322	2	0.933
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	25161-25190	2	0.933
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	25173-25202	2	0.933
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	25209-25238	2	0.933
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	39730-39759	2	0.933
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	39742-39771	2	0.933
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NC_014172	Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence	59672-59701	4	0.867
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	25149-25178	5	0.833
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	39694-39723	5	0.833
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NC_010933	Bacillus cereus strain G9241 plasmid pBC210, complete sequence	177337-177366	5	0.833
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009591	Bacillus cereus G9241 plasmid pBC210, complete sequence	97362-97391	5	0.833
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009940	Bacillus cereus strain 03BB87 plasmid pBCX01, complete sequence	10247-10276	5	0.833
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	331105-331134	5	0.833
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009967	Bacillus cereus E33L plasmid pBCO_1, complete sequence	114644-114673	5	0.833
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	207529-207558	5	0.833
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	121889-121918	5	0.833
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP017574	Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence	233125-233154	6	0.8
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NC_014172	Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence	59864-59893	6	0.8
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009595	Bacillus cereus strain 3a plasmid pBFC_3, complete sequence	225582-225611	6	0.8
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP009606	Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence	91817-91846	6	0.8
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP053994	Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence	165588-165617	6	0.8
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP053992	Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence	148604-148633	6	0.8
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	180277-180306	6	0.8
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	121865-121894	7	0.767
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	180241-180270	7	0.767
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	119115-119144	8	0.733
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	170576-170605	8	0.733
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	125871-125900	8	0.733
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP044459	Acinetobacter indicus strain B18 plasmid pB18-4, complete sequence	10042-10071	8	0.733
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	193709-193738	8	0.733
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	48453-48482	8	0.733
NZ_CP017574_1	1.2\|233233\|30\|NZ_CP017574\|CRT	233233-233262	30	MN694017	Marine virus AFVG_250M1107, complete genome	30037-30066	9	0.7

1. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP017574 (Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

2. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NC_014172 (Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

3. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009595 (Bacillus cereus strain 3a plasmid pBFC_3, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

4. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009595 (Bacillus cereus strain 3a plasmid pBFC_3, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

5. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009606 (Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

6. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009606 (Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

7. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP053994 (Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

8. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP053994 (Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

9. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP053992 (Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

10. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP053992 (Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccagaaca	Protospacer
******************************

11. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NC_014172 (Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence) position: , mismatch: 1, identity: 0.967

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagaacagaagccaaaaca	Protospacer
*************************.****

12. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP017574 (Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence) position: , mismatch: 2, identity: 0.933

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagagcagaaaccagaaca	Protospacer
***************.*****.********

13. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 2, identity: 0.933

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agaacagaagccagaacagaagccagaaca	Protospacer
***.**.***********************

14. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 2, identity: 0.933

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agaacagaagccagaacagaagccagaaca	Protospacer
***.**.***********************

15. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 2, identity: 0.933

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agaacagaagccagaacagaagccagaaca	Protospacer
***.**.***********************

16. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.933

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agaacagaagccagaacagaagccagaaca	Protospacer
***.**.***********************

17. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.933

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agaacagaagccagaacagaagccagaaca	Protospacer
***.**.***********************

18. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NC_014172 (Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence) position: , mismatch: 4, identity: 0.867

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagcaaaagccagagcagaaaccagcaga	Protospacer
***************.*****.**** * *

19. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 5, identity: 0.833

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaaaccagaacagaagccagaaca	Protospacer
..*. ****.********************

20. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaaaccagaacagaagccagaaca	Protospacer
..*. ****.********************

21. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NC_010933 (Bacillus cereus strain G9241 plasmid pBC210, complete sequence) position: , mismatch: 5, identity: 0.833

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaaaccagaacagaagccagaaca	Protospacer
..*. ****.********************

22. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009591 (Bacillus cereus G9241 plasmid pBC210, complete sequence) position: , mismatch: 5, identity: 0.833

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaaaccagaacagaagccagaaca	Protospacer
..*. ****.********************

23. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009940 (Bacillus cereus strain 03BB87 plasmid pBCX01, complete sequence) position: , mismatch: 5, identity: 0.833

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaaaccagaacagaagccagaaca	Protospacer
..*. ****.********************

24. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaaaccagaacagaagccagaaca	Protospacer
..*. ****.********************

25. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 5, identity: 0.833

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccagaacagaagccagagca	Protospacer
..*. **********************.**

26. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 5, identity: 0.833

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccagaacagaagccagagca	Protospacer
..*. **********************.**

27. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 5, identity: 0.833

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccagaacagaaaccagaaca	Protospacer
..*. ****************.********

28. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP017574 (Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence) position: , mismatch: 6, identity: 0.8

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccggaacagaagccagagca	Protospacer
..*. *******.**************.**

29. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NC_014172 (Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence) position: , mismatch: 6, identity: 0.8

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccggaacagaagccggaaca	Protospacer
..*. *******.***********.*****

30. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009595 (Bacillus cereus strain 3a plasmid pBFC_3, complete sequence) position: , mismatch: 6, identity: 0.8

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccggaacagaagccagagca	Protospacer
..*. *******.**************.**

31. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP009606 (Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence) position: , mismatch: 6, identity: 0.8

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccggaacagaagccagagca	Protospacer
..*. *******.**************.**

32. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP053994 (Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccggaacagaagccagagca	Protospacer
..*. *******.**************.**

33. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP053992 (Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccggaacagaagccagagca	Protospacer
..*. *******.**************.**

34. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 6, identity: 0.8

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaaagaaaagccagaacaaaagccagagca	Protospacer
..*. *************.********.**

35. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 7, identity: 0.767

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agaacaaaagccagaacagaaaactgtagg	Protospacer
***.*****************. * * * .

36. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 7, identity: 0.767

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
agagaaaaagccagaacagaaaactgcagg	Protospacer
**** ****************. * * * .

37. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.733

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
acgatcaaagccagaacagaggccagaatc	Protospacer
* ... **************.*******.

38. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 8, identity: 0.733

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
acgatcaaagccagaacagaggccagaatc	Protospacer
* ... **************.*******.

39. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.733

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
acgatcaaagccagaacagaggccagaatc	Protospacer
* ... **************.*******.

40. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP044459 (Acinetobacter indicus strain B18 plasmid pB18-4, complete sequence) position: , mismatch: 8, identity: 0.733

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaagcaaaagtcagaatagaagccaattga	Protospacer
..********.*****.********.   *

41. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 8, identity: 0.733

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
gaagcaaaagtcagaatagaagccaattga	Protospacer
..********.*****.********.   *

42. spacer 1.2|233233|30|NZ_CP017574|CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
cgccttgaacccagaacagaacccagaaca	Protospacer
 *  . .** *********** ********

43. spacer 1.2|233233|30|NZ_CP017574|CRT matches to MN694017 (Marine virus AFVG_250M1107, complete genome) position: , mismatch: 9, identity: 0.7

agagcaaaagccagaacagaagccagaaca	CRISPR spacer
aacagtaaagccggaacagaagccagagat	Protospacer
*. .  ******.**************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6334 : 75018

Bacillus_phage(33.33%)

tRNA,transposase,integrase

attL 50439:50455|attR 78900:78916

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081283918.1\|6334_6535_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_065212445.1\|6677_8333_-	peptidase M4 family protein	NA	NA	NA	NA
WP_065212446.1\|8922_9642_+\|tRNA	tRNA-dependent cyclodipeptide synthase	NA	NA	NA	NA
WP_065212447.1\|9677_10898_+	cytochrome P450, cyclodipeptide synthase-associated	NA	NA	NA	NA
WP_065212448.1\|11023_11494_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_065212449.1\|11792_12269_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_065212450.1\|12326_13541_+	MFS transporter	NA	NA	NA	NA
WP_065212451.1\|14605_15742_+	AMP-binding protein	NA	NA	NA	NA
WP_065212452.1\|15757_17137_+	hypothetical protein	NA	NA	NA	NA
WP_065212453.1\|17133_18495_+	hypothetical protein	NA	NA	NA	NA
WP_065212454.1\|18497_19838_+	MATE family efflux transporter	NA	NA	NA	NA
WP_065212455.1\|20861_21863_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_065212456.1\|22262_23435_+\|integrase	site-specific integrase	A0A142F1N9	Bacillus_phage	6.8e-06	24.4
WP_081283919.1\|23444_23711_+	hypothetical protein	NA	NA	NA	NA
WP_001025757.1\|23775_23994_+	alpha/beta-type small acid-soluble spore protein	A0A1P8CX76	Bacillus_phage	2.1e-17	66.2
WP_157668423.1\|24555_24744_+	hypothetical protein	NA	NA	NA	NA
WP_065212458.1\|25392_26013_+	HAD family hydrolase	NA	NA	NA	NA
WP_065212459.1\|26101_26281_+	hypothetical protein	NA	NA	NA	NA
WP_065212460.1\|26549_27311_+	hypothetical protein	NA	NA	NA	NA
WP_065212461.1\|27311_28292_-	hypothetical protein	NA	NA	NA	NA
WP_065212462.1\|28497_28968_-	DUF5065 family protein	NA	NA	NA	NA
WP_065212463.1\|29332_30031_+	DUF1963 domain-containing protein	NA	NA	NA	NA
WP_157668424.1\|31867_32077_+	hypothetical protein	NA	NA	NA	NA
WP_065212464.1\|33378_33930_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_065212559.1\|35386_36049_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.3e-62	55.0
WP_065212560.1\|36048_36543_+	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	4.5e-60	71.8
WP_065212465.1\|36535_37252_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.8e-55	44.9
WP_065212466.1\|37324_37822_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	8.8e-48	57.9
WP_065212467.1\|37832_38399_+	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	1.1e-43	49.7
WP_065212468.1\|38596_39274_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.0e-67	60.4
WP_065212469.1\|40703_42644_-	ABC transporter permease	NA	NA	NA	NA
WP_065212470.1\|43500_44502_-	VanZ family protein	NA	NA	NA	NA
WP_065212471.1\|45231_46122_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJP1	Virus_Rctr41k	4.0e-19	29.1
WP_065212472.1\|46181_49217_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	1.0e-69	23.0
WP_065212473.1\|49713_52638_+	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	1.2e-72	32.4
50439:50455	attL	NA	NA	NA	NA
WP_065212474.1\|52689_53058_+	hypothetical protein	NA	NA	NA	NA
WP_065212475.1\|53291_54020_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_065212561.1\|57067_57346_+	DNA-binding protein	NA	NA	NA	NA
WP_065212478.1\|57712_59014_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_065212479.1\|59199_60441_-	cation/H(+) antiporter	NA	NA	NA	NA
WP_065212480.1\|60437_61853_-	tyrosine phenol-lyase	NA	NA	NA	NA
WP_087957241.1\|62227_62386_+\|transposase	transposase	A0A1B1P776	Bacillus_phage	4.9e-05	54.7
WP_065212481.1\|63032_64382_+	YncE family protein	NA	NA	NA	NA
WP_065212482.1\|64570_65647_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_065212483.1\|65926_66151_+	hypothetical protein	NA	NA	NA	NA
WP_140150569.1\|66424_67489_+\|integrase	tyrosine-type recombinase/integrase	L7TK95	Rhizobium_phage	5.6e-07	27.0
WP_065212562.1\|67481_67862_+\|transposase	transposase	NA	NA	NA	NA
WP_142937736.1\|68100_68325_-	hypothetical protein	NA	NA	NA	NA
WP_065212485.1\|68477_69398_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_065212486.1\|69743_71084_+	FAD-binding oxidoreductase	S4VRT3	Pandoravirus	1.4e-36	38.8
WP_081283923.1\|71113_72136_+	hypothetical protein	NA	NA	NA	NA
WP_065212487.1\|73899_75018_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WIF9	Clostridium_phage	1.0e-11	27.0
78900:78916	attR	NA	NA	NA	NA

DBSCAN-SWA_2

263872 : 324626

Bacillus_phage(71.43%)

transposase,protease,integrase,bacteriocin

attL 262351:262366|attR 290361:290376

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
262351:262366	attL	NA	NA	NA	NA
WP_065212399.1\|263872_265045_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_087635072.1\|265565_266522_+	hypothetical protein	NA	NA	NA	NA
WP_065212299.1\|267221_267428_-	hypothetical protein	NA	NA	NA	NA
WP_065212298.1\|267641_269057_+	tyrosine phenol-lyase	NA	NA	NA	NA
WP_065212297.1\|269053_270307_+	cation/H(+) antiporter	NA	NA	NA	NA
WP_065212296.1\|270455_271757_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_065212295.1\|272170_272755_+	hypothetical protein	NA	NA	NA	NA
WP_065212294.1\|272870_273176_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065212293.1\|273301_273583_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A1B1P791	Bacillus_phage	6.3e-11	32.1
WP_000448532.1\|273604_273838_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_065212292.1\|274063_274255_+	hypothetical protein	NA	NA	NA	NA
WP_000053742.1\|274388_274982_-	cell division protein FtsN	NA	NA	NA	NA
WP_065212291.1\|275272_275605_-	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_065212290.1\|275716_276016_-	hypothetical protein	NA	NA	NA	NA
WP_065212289.1\|276635_277442_-	acetyltransferase	NA	NA	NA	NA
WP_065212288.1\|278334_278748_-	hypothetical protein	NA	NA	NA	NA
WP_065211993.1\|282709_282919_+	pesticidal protein	NA	NA	NA	NA
WP_065211964.1\|283118_283985_-	hypothetical protein	NA	NA	NA	NA
WP_000067994.1\|284080_284422_-	hypothetical protein	NA	NA	NA	NA
WP_065211965.1\|284818_285160_-	hypothetical protein	NA	NA	NA	NA
WP_065211966.1\|285386_286508_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_140150558.1\|286525_286885_-	hypothetical protein	NA	NA	NA	NA
WP_065211967.1\|286985_289229_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	7.5e-46	29.3
WP_065211968.1\|291355_293050_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
290361:290376	attR	NA	NA	NA	NA
WP_065211969.1\|294006_295719_+	hypothetical protein	NA	NA	NA	NA
WP_140150559.1\|297776_298040_-	DUF3967 domain-containing protein	NA	NA	NA	NA
WP_065211970.1\|298309_299152_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_065211971.1\|299353_300790_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_065211972.1\|301058_301757_-	DUF1282 domain-containing protein	NA	NA	NA	NA
WP_065211973.1\|301865_303065_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_065211974.1\|303061_303742_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.0e-35	38.4
WP_065211975.1\|303738_304929_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_065211976.1\|304965_306018_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_065211977.1\|306035_306557_-	stage II sporulation protein M	NA	NA	NA	NA
WP_065211978.1\|306553_307270_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.2e-27	31.6
WP_065211979.1\|307266_308985_-	hypothetical protein	NA	NA	NA	NA
WP_065211980.1\|309059_309689_-	YIP1 family protein	NA	NA	NA	NA
WP_065211981.1\|309779_310079_-\|bacteriocin	circularin A/uberolysin family circular bacteriocin	NA	NA	NA	NA
WP_065211982.1\|310400_310742_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_065211983.1\|311332_311791_+	hypothetical protein	NA	NA	NA	NA
WP_065211984.1\|311970_312612_-	DUF3967 domain-containing protein	A0A1Z1LZN4	Bacillus_phage	1.6e-09	33.3
WP_157668427.1\|312985_313126_+	hypothetical protein	NA	NA	NA	NA
WP_157668428.1\|313704_313914_-	hypothetical protein	NA	NA	NA	NA
WP_065211987.1\|316534_316759_-	hypothetical protein	A0A1B1P780	Bacillus_phage	1.1e-21	75.7
WP_065211988.1\|317483_318410_-	EamA family transporter	NA	NA	NA	NA
WP_065211989.1\|318506_319247_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_065211990.1\|319243_319975_-	2OG-Fe dioxygenase family protein	NA	NA	NA	NA
WP_065211994.1\|321388_322312_+	hypothetical protein	NA	NA	NA	NA
WP_065211991.1\|322988_323267_-	hypothetical protein	NA	NA	NA	NA
WP_087635073.1\|323504_324626_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	S6AND0	Bacillus_phage	8.3e-171	80.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017577

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017577_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017577_1

1346303-1346413

Orphan

Consensus_repeat	Method
AAAATGAAACCGATTTTTGATGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017577_1

>merge|NZ_CP017577|1|1346303-1346413|CRISPRCasFinder
AAAATGAAACCGATTTTTGATGCACAAGAGGCATGGCAGGAGAAAATGAAACCGATTTTCGATGCACAAGAGGCATGGCAGGAAAAAATGAAACCGATTTTCGATGCACAA

>NZ_CP017577|1|1|1346303-1346413|CRISPRCasFinder
AAAATGAAACCGATTTTTGATGCACAA	GAGGCATGGCAGGAGAAAATGAAACCGATTTTCGATGCACAAGAGGCATGGCAGGAA
AAAATGAAACCGATTTTCGATGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017577.1\|WP_000251640.1\|1348611_1349115_+\|phage-terminase-small-subunit-P27-family	unknown	unknown	gnl\|CDD\|377461
NZ_CP017577.1\|WP_065212688.1\|1350999_1352253_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377413
NZ_CP017577.1\|WP_065212697.1\|1339669_1340839_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_065212696.1\|1341288_1341975_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP017577.1\|WP_065212694.1\|1343581_1344064_+\|ArpU-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273725
NZ_CP017577.1\|WP_065212695.1\|1342595_1343225_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_086426929.1\|1346431_1347154_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_065212700.1\|1337324_1337576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_065212692.1\|1344819_1345770_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|238257
NZ_CP017577.1\|WP_061113368.1\|1347514_1347724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_065212690.1\|1348106_1348484_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NZ_CP017577.1\|WP_065212701.1\|1337131_1337299_+\|DUF3954-domain-containing-protein	unknown	unknown	gnl\|CDD\|315731
NZ_CP017577.1\|WP_065212698.1\|1338461_1338656_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_065212687.1\|1352239_1352950_+\|Clp-protease-ClpP	unknown	unknown	gnl\|CDD\|132927
NZ_CP017577.1\|WP_065212685.1\|1354180_1354468_+\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
NZ_CP017577.1\|WP_065212693.1\|1344063_1344606_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271192
NZ_CP017577.1\|WP_065212691.1\|1347862_1348117_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_065212699.1\|1337596_1338079_+\|nucleoside-triphosphate-pyrophosphohydrolase-family-protein	unknown	unknown	gnl\|CDD\|212148
NZ_CP017577.1\|WP_065212686.1\|1352987_1354160_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_CP017577.1\|WP_065212689.1\|1349116_1350811_+\|terminase-large-subunit	unknown	unknown	gnl\|CDD\|226974

Protein	Function_ID	Function_description	E-value
NZ_CP017577.1\|WP_000251640.1\|1348611_1349115_+\|phage-terminase-small-subunit-P27-family	gnl\|CDD\|377461	pfam05119, Terminase_4, Phage terminase, small subunit.	1.78768e-32
NZ_CP017577.1\|WP_065212699.1\|1337596_1338079_+\|nucleoside-triphosphate-pyrophosphohydrolase-family-protein	gnl\|CDD\|212148	cd11541, NTP-PPase_u4, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from bacteria and archaea. This family corresponds to a group of uncharacterized hypothetical proteins from bacteria, showing a high sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, members in this family consist of a single MazG-like domain that contains a well conserved divalent ion-binding motif EXX[E/D].	5.83984e-35
NZ_CP017577.1\|WP_065212696.1\|1341288_1341975_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	0.00267171
NZ_CP017577.1\|WP_065212694.1\|1343581_1344064_+\|ArpU-family-transcriptional-regulator	gnl\|CDD\|273725	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions].	5.01347e-15
NZ_CP017577.1\|WP_065212692.1\|1344819_1345770_+\|nucleoside-hydrolase	gnl\|CDD\|238257	cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleoside hydrolase to scavenge purine and/or pyrimidines from the environment. .	6.8637e-118
NZ_CP017577.1\|WP_065212690.1\|1348106_1348484_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	2.5092e-06
NZ_CP017577.1\|WP_065212701.1\|1337131_1337299_+\|DUF3954-domain-containing-protein	gnl\|CDD\|315731	pfam13128, DUF3954, Protein of unknown function (DUF3954). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 60 amino acids in length.	9.48191e-15
NZ_CP017577.1\|WP_065212687.1\|1352239_1352950_+\|Clp-protease-ClpP	gnl\|CDD\|132927	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	6.95498e-74
NZ_CP017577.1\|WP_065212685.1\|1354180_1354468_+\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	9.57811e-22
NZ_CP017577.1\|WP_065212693.1\|1344063_1344606_+\|site-specific-integrase	gnl\|CDD\|271192	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	7.77968e-65
NZ_CP017577.1\|WP_065212688.1\|1350999_1352253_+\|phage-portal-protein	gnl\|CDD\|377413	pfam04860, Phage_portal, Phage portal protein. Bacteriophage portal proteins form a dodecamer and is located at a five-fold vertex of the viral capsid. The portal complex forms a channel through which the viral DNA is packaged into the capsid, and exits during infection. The portal protein is though to rotate during DNA packaging. Portal proteins from different phage show little sequence homology, so this family does not represent all portal proteins.	1.73723e-105
NZ_CP017577.1\|WP_065212686.1\|1352987_1354160_+\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	9.51416e-71
NZ_CP017577.1\|WP_065212689.1\|1349116_1350811_+\|terminase-large-subunit	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	2.82704e-115

>NZ_CP017577.1|WP_065212692.1|1344819_1345770_+|nucleoside-hydrolase
MQKKVLLFTDLGIDDAFAILYTFFRKDIQLVGIVADYGNVSRENVIRNINYLKYIAGREEIPVFLGASVPLTGILIQYFPEVHGKVGLGPIIPPEISYSVFPLNDIYQIIESNLEDLTIINLGRLSSLATTFVLNLETMRNVRECICMGGAFFYPGNVTAVAEANFYADPYAANLILQHAKNLTIIPLNVTQHAIVTPEMVEQIDAFHRNTQDLAGLIIKPMLDYYYNFYSKSNPGISGSPMHDFVTVWYLLNREAVSLSRVPIKVIPDQGEGFGQSIADFRFVTNPGYKTHNVAFQFDYERFRKDIMETFLKKRV
>NZ_CP017577.1|WP_065212693.1|1344063_1344606_+|site-specific-integrase
MNFVQPIRDPEQIQQLKGYFKEKSLRNYILFIMGINTGLRISDILKLKVGDLKGSHISMREMKTGKQKRIQITAALRRELKWYIEDMEDYEYLIKSRQGKNRPIGRSMAYKILSGAAAEFGLDEIGTHTLRKTFGYHMYMQTKNIALLMEIFNHSSERVTLRYIGVNQDAMDKAMTRFKI
>NZ_CP017577.1|WP_065212694.1|1343581_1344064_+|ArpU-family-transcriptional-regulator
MTKQLSFLPKIDRTATQEELEGVLESVRIHRQFGMMRKEMKVTPSYEIREHGPTHTVGKPLEDVVIANIQQSKREEWLEKMSLSIDQFLNRLGNGRAGSIQRDIIYKRYLEEEDVCDYMVFNEIGMSERTYRRWKSKAFYKLAFALGLEVYETEETGGNE
>NZ_CP017577.1|WP_065212695.1|1342595_1343225_+|hypothetical-protein
MENQFKEIFGAWIAAIGTITSAIGSTPFDFISSNLRKDLNVYGNVLQAVGNALEADGQGEVSLEQIGNEIQSIGNVTVISGLIIEFKEETQIKLVIAGNWTQALGGLTALADESLNIIGNLLQSIGNSLQAIGGIEELKSIRNEDRSNKEGNVNDVEKDIDTQVNKKTNENEEGKLIDIIGSWVQAVGSVISLIGQIREESEELEGNDE
>NZ_CP017577.1|WP_065212696.1|1341288_1341975_-|CPBP-family-intramembrane-metalloprotease
MNSLYDRRPSSTLTVIIGILLILIAYVGLAYTSLPFNFTFIALAGVIALYLNYGIYGLKSAFSPLQKGVIKIILIGYIWYAVQSSLVAAVIKFGFNFPVASNGATNVFVDNTPAQFIYNALDIIFSLIGEECLVLIPSILAIYFLKKHGVNEKRSMIIVTIVGAFFFGLAHYSTYNGNLVQIFFIIGLARLPFNWVAFKANSLWASSITHILFDFTPFLTALLFSILR
>NZ_CP017577.1|WP_065212697.1|1339669_1340839_+|hypothetical-protein
MSLQELLISRTNTAVVMKSGNDSTAFIGGNPFKTINGAITAINTKGATGITIFVFPGIYDEKVVIPNGNSLRGISLWTVIIRQQNATSNTTVLTMGENTRVEDITVLGTSSIHVDLTGIAFPGTTSQTSRLRTAVITVDNSTASTSGTSNVYGIHSFGTGIPDESISTVRATTITAKSAGLGNKRAILINTNSHNFHCRDVNLTTTSSGGAGSYIGAEVNRIGAQLSLRLASVQGTTADISQSAGTLILSSANLINSNANNLGFSTVLQPTTIIWADPSGLPTGGTRFYRPGTAAVSNTEVFIRLSQKSVVKSLSVRARVGPGGTNTDTWTIRKNGVDTPLVVSLTGAQTSNITSNISTTFQAGDSISLKVTVSTLSAIADTVIQVDIF
>NZ_CP017577.1|WP_065212698.1|1338461_1338656_-|hypothetical-protein
MTSKPLVITLPPISKTKITFYSSSGDVINHTFFTNETSEPIATFAYCPIDFERFETKRMPVLIK
>NZ_CP017577.1|WP_065212699.1|1337596_1338079_+|nucleoside-triphosphate-pyrophosphohydrolase-family-protein
MNIMENGVFQATKLMSEAKNEDQVINEATVLQIASILSIDELNDYQEATLRTWNNKTDFGGRVSNAALGLTGEAGEVADIVKKAIYHGHGFQPSHCPGEEDGNTYKLALELGDILYYLSIMAHELGYTLQDIAEMNIAKLAKRYPDGFSREASQARVDVK
>NZ_CP017577.1|WP_065212700.1|1337324_1337576_+|hypothetical-protein
MSVARNHEVMKESRLKVYIVLEEANFIWDERDVVRFRKMWSQGMSLPKMAKALRRHQAEVALLVIDQADKYLIENRPIGLGIC
>NZ_CP017577.1|WP_065212701.1|1337131_1337299_+|DUF3954-domain-containing-protein
MKKVEIDVSSNKLYIVKDGNVTTVNPPMSGFGEQVAIWVNGKVDRVDTKFTEKIK
>NZ_CP017577.1|WP_086426929.1|1346431_1347154_+|hypothetical-protein
MSPIIEIQNSIREKIQSIIEMYNKIDWDLLREAVAEEIKELEGILVEQEENYWCLDIGTATAIVNGVIAKDDLSEYMDENLESIVTKIVQDPIYELHATLIQEAYQAYKAGFYKLCAMPLFAAFEHVVKLWCFGYIKKDNIVVNHKPNRYGIKKVMDPENYNHVEKENLNKIFVLSVFRMYEKIFADIPKQLGQELNRNAIAHGYHDYNSLSKVDIQKLFQLLKATLILKSFEPYKVAES
>NZ_CP017577.1|WP_061113368.1|1347514_1347724_+|hypothetical-protein
MKLDKQEQAVAIGTFISMLGQELVNDRIDKQKLESVLPIFNEMQDNTTPKQKREAMISLLEKAVDEFLK
>NZ_CP017577.1|WP_065212691.1|1347862_1348117_+|hypothetical-protein
MQVYCSNCNEDYDMQPQVAQLPKRIEKCFYICPHCGHEHVAAYVNDKVRKHQADIAKCHERINKNNLAIEDEMKRLRKRMEGAE
>NZ_CP017577.1|WP_065212690.1|1348106_1348484_+|HNH-endonuclease
MPSKPFKPCKSLGCNELTRDKYCAKHIEKEKETVRYYDKHIRNKSSRSFYNSRLWKDMRELIYRRDHGLCVQCRNKDIIKIGDVVDHIIPIRVDWSKRLEPTNLQTLCHACHNKKTKEDEKKNKK
>NZ_CP017577.1|WP_000251640.1|1348611_1349115_+|phage-terminase-small-subunit-P27-family
MVRIGRKAKPIHLHLLEGNTNRLTKDEIEQRLKAEKQLQAKKDKVKPPTWLDSVAKKEFRRIAGELLELDVITNIDVNALATYCDAYSDYVECTKIIREEGLLVEYTNKAAETNKVPHPLLTKKKQLHEQMKALAVEFGLTPSARAKIVIPNSKQGPKTNVEKEFDV
>NZ_CP017577.1|WP_065212689.1|1349116_1350811_+|terminase-large-subunit
MIRQWMLDYCDDVLNGEVVACQKHKQACKRFLKDIEREGSEDFLYVFKEEKALRFLKWMSLFKHTKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYIGATKTEQSKIVWNEIKAQMNGCEDLKGKFNIAYGKIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGRTFLKGELQSALDVPEKMRNYLTKNMNRWVDMKENGYMDMQKWKDCKETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVISHSFMPEDTLAEKRKTDKVPYDLWVQQKWITTTPGAVVDYEYIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPTKDFREQVYQKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKTTERIDSIAAVINSHVRCMLNSGEMDLNSYILSQDFSF
>NZ_CP017577.1|WP_065212688.1|1350999_1352253_+|phage-portal-protein
MIFRHLFKNQDTTDLKNHSPWFKSLFGYQAASGEKVTVESSLGVPTVYRCINILANSVAMLPFQVFRKTSKGRERDKMHQVSFVLERRPNPYQSPFKFKHLIETHRNTWGNAYINIHWGADGRPKELWALNPAVTTPIVDLKTNKLWYFTSLPDGTPIKITDDDIIHLTTLSTDGLKGKPPIQIARESIGSSQAAQKFKGKFFTNGAAHSGILKTQQALGKEAKDVLRDAWEEANTGLNNAQRIAILDAGLEFEKVGMPLKDAQFIEGMKFDKAEIANIFNIPLHMINELDRATFSNIEQQALDFIQNTLSPILIQYEEEFSYKTFSFNEQKRYYLKFNLTSLLRADSKSRAEFYKIMLDAGAFSINKVLELEDIDGIGEYGDKHRVDLNHVSIEIADEYQLAKASGGLSLKGGEDN
>NZ_CP017577.1|WP_065212687.1|1352239_1352950_+|Clp-protease-ClpP
MRTIKDVFTIKNQTESSADLFIYGDIINNTGWKWDDSDIMPDDVKNILGQLDDKSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGDRVVVPSNAFLMIHKPWTYAAGNAIDFRKAAEDLDNIESGIMNVYKENLKEGIEIEEIQQLVDAETWLSGEEAEKYFNIEVVEAKEVAACSSDYFDKYQKTPSKVVAKSPSLPKNDLNEQLKIQNVLDLLEL
>NZ_CP017577.1|WP_065212686.1|1352987_1354160_+|phage-major-capsid-protein
MDKHEQELRQRVADLKAKAEEFNNSGKYEDAKATIEEAKNAKNELDNYLAMEQIQVPEPVNSQTGALPPASIQNEDTSYKEVFMKAIRGKSLSHEEASVMQEYKAALSENTGKDGGYIVPEDITTTINQLKQTVDNLEQYVNVQPVSTNKGARTLEKRAASTPFAPLSEYGNPNAMQEIASPQFDRLPYVIEDYAGFLPVPNDLLNDTDQALEAYLRQWIAKKSIATRNYLILQEINKLTKVDLKDYKGIKTALNVTLDPAFSAVANIITNQDGFNYLDQLEDKDGRPLLQPDPTNPTRKLLSGKPVIVLSNKTIATDKDGKAPFIVGDLKEAVVLWDRQQLSLDMTKEGGSAWRGNTTEFRAIEREDVTLWDTEAVVYGQITVVPKTGA
>NZ_CP017577.1|WP_065212685.1|1354180_1354468_+|phage-gp6-like-head-tail-connector-protein
MVLKLEEAKKYLRVDGDEEDDLITSFVIAAEIYIKNATSKNVDLKSELAKLAARILIAHWHENREAVGKAEQLAFSLQSILVQLQYCGGDSSESG

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Crispr_ID: NZ_CP017577_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017577_2

3979600-3979733

Orphan

Consensus_repeat	Method
GTTGATTTCTCTTCTTTTTGAGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP017577_2

>merge|NZ_CP017577|2|3979600-3979733|CRISPRCasFinder
GTTGATTTTTCTTCTTTCTTCGGTTCTTCTTTTTTGTCACTAGTTGAACCGCTTGTTGATTTCTCTTCTTTTTGAGACTTGTCTTCTGTTTTACTTTCTGGTTTCGTGCTCGTTGACTTCTCTTCTTTTTGAGA

>NZ_CP017577|2|2|3979600-3979733|CRISPRCasFinder
GTTGATTTTTCTTCTTTCTTCGG	TTCTTCTTTTTTGTCACTAGTTGAACCGCTT
GTTGATTTCTCTTCTTTTTGAGA	CTTGTCTTCTGTTTTACTTTCTGGTTTCGTGCTC
GTTGACTTCTCTTCTTTTTGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017577.1\|WP_059304263.1\|3971945_3972827_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP017577.1\|WP_000411274.1\|3984681_3985986_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP017577.1\|WP_000931959.1\|3976669_3977104_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP017577.1\|WP_000998925.1\|3988742_3990245_-\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235622
NZ_CP017577.1\|WP_059304262.1\|3970064_3971885_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011
NZ_CP017577.1\|WP_000367486.1\|3987220_3988741_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
NZ_CP017577.1\|WP_059304325.1\|3973072_3973840_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226870
NZ_CP017577.1\|WP_065212345.1\|3983455_3984475_-\|stage-II-sporulation-protein-D	unknown	unknown	gnl\|CDD\|274332
NZ_CP017577.1\|WP_065212346.1\|3990241_3992104_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_CP017577.1\|WP_047792182.1\|3982348_3983356_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP017577.1\|WP_000393137.1\|3974642_3975386_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226453
NZ_CP017577.1\|WP_016513260.1\|3973951_3974653_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP017577.1\|WP_000544012.1\|3978695_3978968_-\|sporulation-transcriptional-regulator-SpoIIID	unknown	unknown	gnl\|CDD\|378813
NZ_CP017577.1\|WP_002005985.1\|3986025_3986736_-\|YwmB-family-TATA-box-binding-protein	unknown	unknown	gnl\|CDD\|370056
NZ_CP017577.1\|WP_000467973.1\|3975645_3976323_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP017577.1\|WP_047792181.1\|3980621_3981326_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP017577.1\|WP_000008901.1\|3979277_3979412_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_000057889.1\|3986781_3987018_-\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|227173
NZ_CP017577.1\|WP_000457978.1\|3977533_3978535_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237563
NZ_CP017577.1\|WP_000170866.1\|3981325_3982168_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
NZ_CP017577.1\|WP_059304263.1\|3971945_3972827_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	0
NZ_CP017577.1\|WP_000411274.1\|3984681_3985986_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP017577.1\|WP_000931959.1\|3976669_3977104_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	5.26499e-95
NZ_CP017577.1\|WP_000998925.1\|3988742_3990245_-\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235622	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed.	6.06753e-178
NZ_CP017577.1\|WP_059304262.1\|3970064_3971885_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NZ_CP017577.1\|WP_000367486.1\|3987220_3988741_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	3.27701e-151
NZ_CP017577.1\|WP_059304325.1\|3973072_3973840_-\|tyrosine-protein-phosphatase	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.74258e-107
NZ_CP017577.1\|WP_065212345.1\|3983455_3984475_-\|stage-II-sporulation-protein-D	gnl\|CDD\|274332	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell. [Cellular processes, Sporulation and germination].	5.24617e-135
NZ_CP017577.1\|WP_047792182.1\|3982348_3983356_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.81869e-31
NZ_CP017577.1\|WP_000393137.1\|3974642_3975386_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	3.29286e-84
NZ_CP017577.1\|WP_016513260.1\|3973951_3974653_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	5.21663e-83
NZ_CP017577.1\|WP_000544012.1\|3978695_3978968_-\|sporulation-transcriptional-regulator-SpoIIID	gnl\|CDD\|378813	pfam12116, SpoIIID, Stage III sporulation protein D. This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.	1.17272e-38
NZ_CP017577.1\|WP_065212346.1\|3990241_3992104_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_CP017577.1\|WP_000467973.1\|3975645_3976323_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	1.72392e-81
NZ_CP017577.1\|WP_047792181.1\|3980621_3981326_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	8.58216e-05
NZ_CP017577.1\|WP_002005985.1\|3986025_3986736_-\|YwmB-family-TATA-box-binding-protein	gnl\|CDD\|370056	pfam08680, DUF1779, TATA-box binding. TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis contains a circularly permuted TATA-box binding protein-like fold. Jian-Xiang Liu, Qi Xie, Jun Lin. Protein Structural Data Mining and Evolutionary Bioinformatic Analysis on Domains of TATA-box Binding Protein-like Fold. Life Science Journal 2014; 11(2): 298-302 (not yet in PubMed 27-02-2014).	5.16446e-34
NZ_CP017577.1\|WP_000057889.1\|3986781_3987018_-\|DUF1146-domain-containing-protein	gnl\|CDD\|227173	COG4836, COG4836, Predicted membrane protein [Function unknown].	1.23409e-23
NZ_CP017577.1\|WP_000457978.1\|3977533_3978535_-\|rod-shape-determining-protein	gnl\|CDD\|237563	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.	0
NZ_CP017577.1\|WP_000170866.1\|3981325_3982168_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.20989e-89

>NZ_CP017577.1|WP_000008901.1|3979277_3979412_-|hypothetical-protein
MSFLFVLSTAIILLFVLFTLYYYIAGKKEVPHHQLLEEEFEREE
>NZ_CP017577.1|WP_000544012.1|3978695_3978968_-|sporulation-transcriptional-regulator-SpoIIID
MHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ
>NZ_CP017577.1|WP_000457978.1|3977533_3978535_-|rod-shape-determining-protein
MFARDIGIDLGTANVLIHVKGKGIVLNEPSVVAIDRNSGKVLAVGEEARSMVGRTPGNIVAIRPLKDGVIADFEITEAMLKYFINKLDVKSFFSKPRILICCPTNITSVEQKAIREAAERSGGKTVFLEEEPKVAAVGAGMEIFQPSGNMVVDIGGGTTDIAVLSMGDIVTSSSIKMAGDKFDMEILNYIKRKYKLLIGERTSEDIKIKVGTVFPGARSEELEIRGRDMVTGLPRTITVCSEEITEALKENAAVIVQAAKGVLERTPPELSADIIDRGVILTGGGALLHGIDMLLAEELKVPVLIAENPMHCVAVGTGIMLENIDRLPKRALR
>NZ_CP017577.1|WP_000931959.1|3976669_3977104_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGRLAFFAGIDNCRFKKQVRPGDQLRLEVEMTRVRGPIGKGKAIATVDGEVACEAEITFAIGDKKE
>NZ_CP017577.1|WP_000467973.1|3975645_3976323_-|CpsD/CapB-family-tyrosine-protein-kinase
MFGRKRRKPLRQLITHKEPKSRITEQYRNIRTNIEFTSVDNHVRSIIVTSADPGDGKTTTISNLAVVFGQQGKKVLLIGADLRKPTIQNLFAIHSSNGLTNLLSGQAKLMQCIQKTDIENVYLMAAGPIPPNPAELLGSRAMDEALLEAYNMFDIILIDTPPVLAVTDAQILANKCDGIVLVVRSEKTEKDKIVKAKQILDKASGKLLGVVLNDKREEKEQYGYY
>NZ_CP017577.1|WP_000393137.1|3974642_3975386_-|capsular-polysaccharide-biosynthesis-protein
MEETISLKELFHILKKRLAMILVIAFGAAIVSAIISFFFMTPIYQSSTQILVNQKKQEGAMFQAGEIQTNIQLTNTYKVIIKSPVILEQVNEKLNLNMTSQALTGKINVANEKDSQVISVTAEDKDPKLARDIANATADVFKGEVAKIMNVDNVTVLSKAEVAENQSPIKPRPMLNVAIAFVVGLMASVGLAFLLEYLDNTVKKEEDVESLLGLPVLGIVARMDEETMNVKSHAPSSRKVRGQTIGS
>NZ_CP017577.1|WP_016513260.1|3973951_3974653_-|CpsD/CapB-family-tyrosine-protein-kinase
MALNLFKKKKNHRQRRQLIAHQQPKSPISEQYRNIRTNIEFAAIDTNLHSLMVTSANPSEGKTTTTANMAVVFAQQGKKVLLIDADMRKPAMHQMFQVDNIFGLTNVLTNSERLEKCVQTTLVDNLHFLACGPIPPNPAELLGSKSMKELLGQAYSMYDLVIFDMPPILAVTDAQIMANVCDASILVVRSESTEKETAVKAKGLLESAKGKLLGVVLNDREREQGLYYYYGAN
>NZ_CP017577.1|WP_059304325.1|3973072_3973840_-|tyrosine-protein-phosphatase
MIDLHCHILPGIDDGAQTVTDSLAMAQQAVSEGIHTIVATPHHQNGKYVNERISIIHHVKQLNDELQQHNIPLTILPGQEVRLYGDLLEDYEAGKIGTLNETNKYIFIEFPSNHVPRYAEQLLYELRVKGMIPIIVHPERNAELIERPDKLYNLVNKGALTQVTAGSLLGKFGKKIKKFSLQLVEHNLTHMIASDAHNTTSRGFHLAESYELIEKEFGMSVMSDLKENPYLLISGKAIYKEDPEQIRRKKLFGIF
>NZ_CP017577.1|WP_059304263.1|3971945_3972827_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKKVRKAIIPAAGLGTRFLPVTKAMPKEMLPIVDKPTIQYIVEEAIESGIEDIIIVTGKGKRAIEDHFDHSFELEQSLLEKGKHEMLEKVQASSKINIHYIRQKEPKGLGHAVWCARKFIGNEPFAVLLGDDIVQAETPCLRQLMDEYEGTQSSVIGVQTVSENETHRYGIIDPIEQNDRRYQVRQFVEKPAVGTAPSNLAIMGRYVLTPEIFMFLENQQTGAGGEIQLTDAIQRLNEVQRVFAYDFEGTRYDVGEKFGFIKTTIEMALQNEELNVELMKYMKELVKKEEVHS
>NZ_CP017577.1|WP_059304262.1|3970064_3971885_-|polysaccharide-biosynthesis-protein
MSYRKRLSLLILLDSFIVLTAVYLSYWFIHPNVLSKIPMTVVISSITLLCSHHVFAAIYKLYNKAWEYASIGELKQIFKAITLSIIVTAIVQQIINHDIYVRILAIAWMLHLLLIGGSRFVWRMFRDTYIAKATDKKRTLIIGAGSAGTMVVRQLQHNKEADLYPIAFVDDDRNKQKLEIYNVPVVGTTNHIQEIVEDNDIEHIIIAIPSLNRGQINEIFEKCRKTKAKTQIVPMLEDLLDGKLSVNEFRDVQVEDLLGREPIKLDDAGIGEKITGKTILVTGAGGSIGSEICRQVMKYKPAKIVLLGHGENSIYNIEMEMRVTYKDTVEITTEIADIQDRHKIFEIMKKHQPYIVYHAAAHKHVPLMERNPEEAVKNNIFGTKNVAEAADTFKVNTFVMVSTDKAVNPTNVMGATKRFAEMIVQHMASVSTSTRFVAVRFGNVLGSRGSVIPLFKKQIQKGGPVTVTHPDMIRYFMTIPEASRLVIQAGTLARGGELFVLDMGDPVKIVDLAKNLITLSGFSIEEIGIEFTGLRPGEKMYEELLNDGEIHPEQIFPKIHIGKAVLIDRDILMQFIKDFEEMNKREIRERLLDIACFNYEKEMVKQ
>NZ_CP017577.1|WP_047792181.1|3980621_3981326_-|ABC-transporter-permease
MTFSMRRVSAIFRKEVQDFKTNSQVLLMAFLPIILSFLFSRFGVGKEMLGITTITAFLFVAGFVQSMVIAEEKEKHTLRVLMLSPASSVEVLLGKSLLTSGLTMVICIANLFILDQLNINLPLVGLIFLCGTILFIVLGTMIGLLASSVPQTSIIGMPILMTMYLAVQFEPMVENKVIKTMIGYLPTSHIVKALKSLVGGSGFSSISGHVLNVAVWLIISLVVCLIVYKKKQLD
>NZ_CP017577.1|WP_000170866.1|3981325_3982168_-|ABC-transporter-ATP-binding-protein
MTLAIEMKDVMKSFSGKTALRNVNIEVKQGEIFGFLGPSGSGKTTTVKILTSQLLHSVGTVRVLGKDITGPSSIDYKRIGILTDNSGLYERLSIYDNLLLFCDLYDCKKERIDEVLTQVNLLDDKKTPVKKLSKGMKQRVTLARAILHKPDILFLDEPTSALDPVNVQNIHKILKDLNEEGTTIFLTTHNMDEAETLCNRIAFLCGGEIVALDTPENLRLQYAKDQIEVVLKGKRKEVVQKDELGANRISEWMKKGELLSIHSHEPTLGDIFIEVTGRGL
>NZ_CP017577.1|WP_047792182.1|3982348_3983356_-|ATP-binding-cassette-domain-containing-protein
MALLELKQLGKANQLPEMELKVEKGQCIVLQCNNHTAKVLHRIIIGQEEASTGNVLFEGEAIGKKNYSRIGFCFLKDEAYDRLKVKEYFKFLIGLYESKISIEEVVQSVGLLDKLNVKVEKLSFSEKRRLHIGRVMIHNPDLIILEEPEQNVDIESTVIIRKAIMKMKEQGKAIFITSSFLSDALSLTEDVYILNNDGVKKIEIEQEEVEEVGEEKVIQMIPQMKLERIPAKVNDKIILLDPMEIHFIETQNGVTHIHVREGDFVCALTLSELEARLTGFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDERKSSIPLSKGRMDELKGVIGL
>NZ_CP017577.1|WP_065212345.1|3983455_3984475_-|stage-II-sporulation-protein-D
MKFSKPLFITVALLIALVIIVPAALVIPFAKAKVGEETASKTPPAIESIPAPGKVDTAVQVAVYREKQKKVETLPVEEYVTGVVASEMNASFEIEALKAQALAARTFVVQRMLSGGKKNNADVTDTVKDQVYKSKDELKKQWGNNYENNLKKIEEAVSKTAGQVLTYDGKPISASFFSTSNGRTENAADYWGNDYPYLKSVDSPWDQASPKFTSEQTFTVADFQKRLGVKVLADGKVGNIKDLTEGKRVKDVTFQGKTLTGKEVREKLDLRSSDFTWKQQGDKIIVTTKGFGHGVGMSQYGANGMAAEGKKYTDIVAHYYKGVEIKTMNDYEGKLMVKK
>NZ_CP017577.1|WP_000411274.1|3984681_3985986_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEKIIVRGGKRLNGTVRVEGAKNAVLPIIAAALLASDGKNVLSEVPVLSDVYTINEVLRHLNAEVVFENNQVTIDSSKELNIEAPFEYVRKMRASVQVMGPLLARNGRARIALPGGCAIGSRPIDQHLKGFEAMGAKVQVGNGFVEAYVEGELKGAKIYLDFPSVGATENIMSAATLAKGTTILENAAKEPEIVDLANFLNAMGAKVRGAGTGTIRIEGVDKLYGANHSIIPDRIEAGTFMVAAAITGGDILIENAVPEHLRSITAKMEEMGVKIIEENEGVRVIGPDKLKAVDIKTMPHPGFPTDMQSQMMALLLQADGTSMITETVFENRFMHVEEFRRMNADIKIEGRSVIMNGPNSLQGAEVAATDLRAAAALILAGLVSEGYTRVTELKHLDRGYVNFHKKLAALGATIERVNEKVEEVKEQEVSDLHA
>NZ_CP017577.1|WP_002005985.1|3986025_3986736_-|YwmB-family-TATA-box-binding-protein
MKLKLKAILIVALSVVLFLVGYREMKPISDEQKMESMIKALEKNDAKVEKWSWLARETKTISNIHTFQKLLNDVKEKANIQKWEVEQSPDGYKATSYKKLSSYEERVVVTWSKENTKENTFIIFEVSGAKWDPKYVQNMNKIFSEKPIIYTCVQGVLNDKIEGVLQNKTNQVLKDLSARAIEQVEERAFVSVSAYNKKWDDALSTNREKINVQIAIRSTDNKDTIVVGTPIITSEY
>NZ_CP017577.1|WP_000057889.1|3986781_3987018_-|DUF1146-domain-containing-protein
MAQLLGQQALIAIVSHLLFITITWWALQGIHIERLMKSGKVLQTRVLLILITIAIGTSVSNFFLDYLGYSKSLTYLVK
>NZ_CP017577.1|WP_000367486.1|3987220_3988741_-|NADH-quinone-oxidoreductase-subunit-NuoN
MDMNTLLSLSWHLMVPEFIILGAAILLSICDLFFKLNHRYVALGAIAAIVLAIVSLITLYSEPAGDILNGSFVLDGFSKGFKTLLLGASALILCTAMSDDKKNPIEDKGEYYYLFLMALLGAMFMASSVDFITLFVGLELLSLSSYILVGIRKKSRASNEAAMKYVISGGIGTAITLFGMSYLYGITGSTNIVDMQKVLTGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKIAGFLLIIRLFLMIFASVLIQGDMQSLYGHMSIYIAVLASITMIVGNVVALKQYNIKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQNNEENITIFTGLYKRSPFTAIMMTIFILSLAGIPGTAGFIGKINIFLGALHVEPAHYVLASIMMGTTVVSFVYYFRILQQMFFRTGETEERIRLPLNIKVVMSLCAISIVILGIMPMIGYNFFYEYFPLMKDFFFLGNVVQ
>NZ_CP017577.1|WP_000998925.1|3988742_3990245_-|NADH-quinone-oxidoreductase-subunit-M
MNDLLLTFFIFSPLLGILLLVLTPKKELRTVRALGLFGTALPFGIAIVLACTYASGKNLSLFDEKMKWIKFGDFTAVDKRWFSIYYELGIDGLSLVMMVLTALLATLAAIAAFSIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVELKEILRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRATLQVTFGKKEWEAKSDIHGWEYVPVLLLIFCIIAIGVMPEILGDPLQNTLKTLGVK
>NZ_CP017577.1|WP_065212346.1|3990241_3992104_-|NADH-quinone-oxidoreductase-subunit-L
MIDYAWLIPLFPLVSFLLLIIFGKKIREGSSVLSIFFVFLSFILAVLVLIERFSEASVKHKWVWLRAGDVDISFGFEVTALGALMLFIVTLVSLLVHVYSKGYMKGDERLPTFYAYLGLFTFAMLGLVISTNLLQLYIFWELVGLGSFLLIGFYFFKEEAKAAAKKAFIMTRIGDVGLFIGMILIFWYAGSFEYDAIFRAIYTGDLPPYMITITAILIFIGAMGKSGQFPLHTWLPDAMEGPTPVSALIHAATMVAAGVYLVATMFPLFSASTVAMQTVAIVGAFTAIFAASIGLVQTDIKKVLAYSTVSQLGYMMLALGSAGYVAGIFHLTTHAFFKALLFLAAGSVIHAVHTQNINKMGGLQKKMKVTGTLFLIGTLAISGVPLLSGFFSKDEILAATWMNGNYVLFTLAVIAAFLTAFYMFRLYFLVFTGETKTKEEVHESPRVMTYPMIVLGVLAVVAGYINTPWFGTFLGDWLTKDVGFKVEETHGPVWIMIVATLVSFAGIALAYFIYRKKSISRNWAGGTETSLYNLLKEKYYVDELYNMTVIPITKGIAHVLRLFEVYVVEGIAVLIASVVKGTSNLGSKLQNGNVQVYGTVTAVSLAVLVIILLYTGGDLR

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Crispr_ID: NZ_CP017577_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017577_3

5292905-5293033

Orphan

Consensus_repeat	Method
AGGAGCAAACCAAATGGCAGGTGGCGTAAATCAATTAGCAGATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017577_3

>merge|NZ_CP017577|3|5292905-5293033|CRISPRCasFinder
AGGAGCAAACCAAATGGCAGGTGGCGTAAATCAATTAGCAGATGGTTCAAGCCAAGTAACAGATGGTTTAGGAACATTATCTGTAGGAGCAAACCAAATGGCAGGTGGCGTAAATCAATTAGCAGATGG

>NZ_CP017577|3|3|5292905-5293033|CRISPRCasFinder
AGGAGCAAACCAAATGGCAGGTGGCGTAAATCAATTAGCAGATGG	TTCAAGCCAAGTAACAGATGGTTTAGGAACATTATCTGT
AGGAGCAAACCAAATGGCAGGTGGCGTAAATCAATTAGCAGATGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017577.1\|WP_000784676.1\|5297161_5297896_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NZ_CP017577.1\|WP_000620467.1\|5295095_5295605_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP017577.1\|WP_000567010.1\|5296852_5296981_-\|YhfH-family-protein	unknown	unknown	gnl\|CDD\|379490
NZ_CP017577.1\|WP_000963381.1\|5290090_5290663_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP017577.1\|WP_006916060.1\|5299624_5301157_+\|fatty-acid--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|236072
NZ_CP017577.1\|WP_000984146.1\|5286484_5287330_-\|membrane-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_000103715.1\|5295799_5296813_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP017577.1\|WP_000184510.1\|5287559_5287961_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NZ_CP017577.1\|WP_065211725.1\|5283631_5285998_+\|endonuclease	unknown	unknown	gnl\|CDD\|225249
NZ_CP017577.1\|WP_000140291.1\|5294276_5294582_+\|DUF2087-domain-containing-protein	unknown	unknown	gnl\|CDD\|226378
NZ_CP017577.1\|WP_063220298.1\|5299034_5299463_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_001986098.1\|5294059_5294272_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_000726775.1\|5279604_5280540_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|183526
NZ_CP017577.1\|WP_001228071.1\|5280559_5281981_+\|protoporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|237009
NZ_CP017577.1\|WP_065211721.1\|5294608_5294962_-\|PlcR-regulated-protein-PRP2	unknown	unknown	gnl\|CDD\|379617
NZ_CP017577.1\|WP_065211724.1\|5286130_5286430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017577.1\|WP_065211723.1\|5287963_5289877_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|310280
NZ_CP017577.1\|WP_013141801.1\|5278543_5279590_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP017577.1\|WP_065211726.1\|5282037_5283390_-\|DUF4026-domain-containing-protein	unknown	unknown	gnl\|CDD\|338635
NZ_CP017577.1\|WP_000897277.1\|5297905_5298895_+\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|161920

Protein	Function_ID	Function_description	E-value
NZ_CP017577.1\|WP_000620467.1\|5295095_5295605_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.55712e-15
NZ_CP017577.1\|WP_000567010.1\|5296852_5296981_-\|YhfH-family-protein	gnl\|CDD\|379490	pfam14149, YhfH, YhfH-like protein. The YhfH-like protein family includes the B. subtilis YhfH protein, which is functionally uncharacterized. Its expression is repressed by the Spx paralogue MgsR, which regulates genes involved in stress response. This family of proteins is found in bacteria. Proteins in this family are typically between 42 and 53 amino acids in length.	3.52581e-13
NZ_CP017577.1\|WP_000963381.1\|5290090_5290663_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.571e-14
NZ_CP017577.1\|WP_000184510.1\|5287559_5287961_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.82262e-44
NZ_CP017577.1\|WP_000103715.1\|5295799_5296813_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.56346e-114
NZ_CP017577.1\|WP_000140291.1\|5294276_5294582_+\|DUF2087-domain-containing-protein	gnl\|CDD\|226378	COG3860, COG3860, Uncharacterized protein conserved in bacteria [Function unknown].	4.70267e-24
NZ_CP017577.1\|WP_065211725.1\|5283631_5285998_+\|endonuclease	gnl\|CDD\|225249	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only].	2.26155e-71
NZ_CP017577.1\|WP_000784676.1\|5297161_5297896_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	9.0311e-87
NZ_CP017577.1\|WP_006916060.1\|5299624_5301157_+\|fatty-acid--CoA-ligase-family-protein	gnl\|CDD\|236072	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP017577.1\|WP_000726775.1\|5279604_5280540_+\|ferrochelatase	gnl\|CDD\|183526	PRK12435, PRK12435, ferrochelatase; Provisional.	0
NZ_CP017577.1\|WP_001228071.1\|5280559_5281981_+\|protoporphyrinogen-oxidase	gnl\|CDD\|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	0
NZ_CP017577.1\|WP_065211721.1\|5294608_5294962_-\|PlcR-regulated-protein-PRP2	gnl\|CDD\|379617	pfam14470, bPH_3, Bacterial PH domain. Proteins in this family are distantly related to PH domains.	2.20269e-19
NZ_CP017577.1\|WP_065211723.1\|5287963_5289877_+\|M56-family-metallopeptidase	gnl\|CDD\|310280	pfam05569, Peptidase_M56, BlaR1 peptidase M56. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. homologs to this peptidase domain, which corresponds to Merops family M56, are also found in a number of other bacterial genome sequences.	6.57771e-47
NZ_CP017577.1\|WP_013141801.1\|5278543_5279590_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP017577.1\|WP_065211726.1\|5282037_5283390_-\|DUF4026-domain-containing-protein	gnl\|CDD\|338635	pfam13218, DUF4026, Protein of unknown function (DUF4026). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 450 amino acids in length. The family is found in association with pfam10077.	6.31864e-176
NZ_CP017577.1\|WP_000897277.1\|5297905_5298895_+\|lipoate--protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	2.90203e-139

>NZ_CP017577.1|WP_000963381.1|5290090_5290663_+|TetR/AcrR-family-transcriptional-regulator
MAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAESAIRSDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLKIAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLKGLSN
>NZ_CP017577.1|WP_065211723.1|5287963_5289877_+|M56-family-metallopeptidase
MINTLINVYLPHFFDWLIETSLMASILVGFILCIKVLFRNKLTPRWQYMLWIVLMIRLLLPWSPDSSYSIYSLLSYSSSVSEVIPKNMPATENIVNIESDRKVELESNSKMVTKTSEPEVKVSSEKQTTFSLYQLALYVWLAGVIVLAVITFLTNRRLYSYIKKQPDITDEQVATVFNRCKQSMKMKKAVSLRLAGKIASPTVFSFFRPKVLLSKKHMKVLNEQQLQYVFYHELAHIKRNDVAVNWIMYSLILLNWFNPILWYAYFCMREDQELACDAYALTFIDKEEQIAYGHTIITLLQHYSYQVPSLANLSRNKRTLKRRIVMIKKFQKKSYRLSLLGIIAIVAIASLSLFNARTTEGKEKQEDKVEQSKDAFQNAVDTLFGTEEKARKEWGMSNWQYENRTAFLYHAEKALTKEEFENYVQLYKEVLQIEKKGLVRLNLPENFQGDIKEVKEERLSTENREKLKEIRNKTTPYEDKVGKYLTYTVEEVQQHVDFQIKRPTYTIKGYTQKDERVNYYLKIKPEFTIELEYTNGKGNYTISQSQVFGESKDPFSHQFIVPENIEKYELEGNQIFYATHHSDSNLQGMKMIVPAKGKNSAYQIVIINHSLENPGEAVFDKNVNKEELEKIMLSMLK
>NZ_CP017577.1|WP_000184510.1|5287559_5287961_+|BlaI/MecI/CopY-family-transcriptional-regulator
MTNQLPKISEAELEIMKVLWSSSPQTANEIIEELEDAMDWKPKTIRTLINRLVQKEAVSYHQDKGRMYAYYPLVSQHNYLQVETKSLLKRFCGAAFKPLLVNFLKEEKLSSEDINELKRILDEKTEENKRKDR
>NZ_CP017577.1|WP_000984146.1|5286484_5287330_-|membrane-protein
MMRALRLNIKQAFCNRVSLIIMFSGFVLICIYHYYYVIRYLGDAANGPISTDIKWIGFRGNEMDVYLLLMPVIASLPFSTSYNSDKSDGFKPFVSKEISLFSYSVTKYIVTFFCGGLLYTFPFILSLLFCKLTIPDGVPTAGSGIINDNGMFANLYETSPITYIAVYIGINFLFAGLMALLGLAASAWSQKDYMALLFPFATTSIPYVLLNTVLPTIGGAPIHLYDPRQPLHGMSPYILTIQCAFFLLVSLIMYIQGVKRDRKKYRRRLQKRERCRKAFQV
>NZ_CP017577.1|WP_065211724.1|5286130_5286430_+|hypothetical-protein
MQLQINGKVMNQFAIFFSTIVMLQFVADITGLTSHLDITYNLIHTAASYITFSLAVIFTLIGARRELSKYAIVSLCLVIAIKAIYFVAVVILWGLAGTP
>NZ_CP017577.1|WP_065211725.1|5283631_5285998_+|endonuclease
MAVKKLLSVFLSFLLLLSFTGTLAQAEETASMSVEKAIQVFKQQGKTKGIVEGYIVGYTQSSSKYTKDPAKFDDTNVAIADSPNETNPDKIMPVQLPKGDVRTAVNVKDHPENIGKKVSLTGTFELYFSNPGLKSVTAYKFQGEGQNRVSDVVASPNSGEVAKGTAVTLTTNTEGATIYYTLDGSNPTNKSVRYNGQIIVNENSVVKAIAEKEGLTSSAISTFSFIIVNNEPVRIHDIQGKSHMSPYNGKKVNNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQVDGVVEEYVGPGYAERFETDLTTTEIKASRVAVIAKDQSLPAPIVLGENGVKIPDQIIDNDAFGLFDPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNLYVTVKNGGDKIVTQYGTPLLDENQLNPERLSVKVPRDYVAKVGDIFTGDITGVVGYDYGSFRISPITELPAVVDGGFKQVGANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNGSINDGTTDASLSAKRIIDAVLEIRGPKYEYVEIAPNNNQDGGAPGANIRVGFFYNPSRVKLATVPKLLDKNVVRIGDENPLFESTRKPLAAEFTFQGQNIVVVANHLNSKLGDATPFGKVQPLVLKSEDKRIQLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLAQIDLKKAS
>NZ_CP017577.1|WP_065211726.1|5282037_5283390_-|DUF4026-domain-containing-protein
MEVQTETYRAAMNGTLERHFSDMIAVIPTRITIEQLKQRLENITTKVDELKIVYSDETSLIVELHMDETIIPYELHIDEANDPEEYKMYNRQDSTIVDRNFEDAAFGTEIFTRTLFVGDVLDCFFQQIQFLWNLAPDLLFVIDSSAAMKVLSRNYIEYHVENELLPDIPDLYVIHSVYEDDKEGEPTQYWFHTHGLLRAGVTEIELIIPNRISSYYGIGDLFQTFANNAVENGQVPMNEPIVIAHSQQGSIHTVAVPWEKGLSYIGHKTSMDQLSSIEDEEVKLQPIDAQNTFLGGMDARDEYHQSPSVLLFKFNTSEEYIESFFKEHEEATGLMFYKTNSETDRMAYNAKNTFGYFSNIFQIEKSNEEFRFLAKFGVSYEEGKSEHMWFEMQHITEDLIQGILINEPYFIEDMSEGNSYHLDFDNLTDWVIYAGDAVIQPNNLYMFIGE
>NZ_CP017577.1|WP_001228071.1|5280559_5281981_+|protoporphyrinogen-oxidase
MRKKVVIIGGGITGLTAMYNLQKNIHEKNLPIDTLLIEASGKLGGKIQTVRKDGFTIERGPDSFLARKESAARLVKELGLGDELVNNQAGQSFILVNNRLHKMPNGSMMGIPTQITPFLFSGLFSPIGKLRAGFDLLMPRSKPVSDQSLGQFFRHRLGNEVVENLIEPLLSGIYAGDIDEMSLMSTFPQMYQIEQKHRSISLGMRTLAPKEEKAEPKKGMFQTVKTGLESIVKSLEAKMHEGTIIKGTRIEKVAKQGDGYTITLSNGKEIEADAIVVATSHKVLPSMFAQYKQFRFFRNIPSTSVANVALAFQKSAIQRDINGTGFVVSRNSDYTITACTWTHKKWPHTTPEGKTLLRCYVGRAGDEAVVEQTEEELVQLVLEDLRKTMDITEDPEFTIVSRWKEAMPQYTVGHNERMKKLTTFMEKELPGIYLAGSSYAGAGLPDCMNQGEEAAKRVLSHLEKVIDAELIAQ
>NZ_CP017577.1|WP_000726775.1|5279604_5280540_+|ferrochelatase
MKKKIGLLVMAYGTPYKEEDIERYYTHIRRGRKPSPEMLEDLTERYRAIGGISPLATITLEQAKKLEKRLNEVQDEVEYHMYLGLKHIEPFIEDAVKDMHNDGIQDAIALVLAPHYSTFSVKSYVGRAQEEAEKLGNLTIHGIDSWYKEPKFIQYWVDAVKGIYNGMSDAEREKAVLIVSAHSLPEKIIAMGDPYPDQLNETADYIARGAEVANYAVGWQSAGNTPDPWIGPDVQDLTRELNEKHGYTSFVYAPVGFVAEHLEVLYDNDFECKVVTDEIGAKYYRPEMPNASDAFIDCLTDVVLKKKESVL
>NZ_CP017577.1|WP_013141801.1|5278543_5279590_+|uroporphyrinogen-decarboxylase
MVRTINETFLKACRGERTDYVPAWYMRQAGRSQPEYRKIKEKYSLFEITHNPELCAYVTKLPVDQYNVDAAILYKDIMSPLPAIGVDVEIKSGIGPVIDNPIRSLQDVEKLGEINPEDDVPYILDTIRLLTTEMLDVPLIGFSGAPFTLASYMIEGGPSRNYHNTKAFMYAEPKAWFALMDKLADMVITYLKAQINAGAKAVQIFDSWVGTVNVADYRVFIKPAMERIFAEVRKMGVPMIMHGVGAAHLVNEWHDLPLDVVGLDWRLPIEEARARGVHKAVQGNMDPSFLLAPWSVIEEHVKSILDQGMKQPGYIFNLGHGVFPEVNPDTLKRLTTFIHEYSKGQLAK
>NZ_CP017577.1|WP_001986098.1|5294059_5294272_+|hypothetical-protein
MMKGNLTYYFIVNPLIIFLVYALSPILFDKEVYTSMKDAFGILTFYYVLMGGYYFIDILSEKIKKKSDGG
>NZ_CP017577.1|WP_000140291.1|5294276_5294582_+|DUF2087-domain-containing-protein
MTESEMKFRDTTIRNFFDKEDRLKSIPGQKKKKLVLLEHLISKLNAENQYTEKEINTFIKQYHDDFCTIRREFIVQGFMNREDNMYCINGREVWTKWEELK
>NZ_CP017577.1|WP_065211721.1|5294608_5294962_-|PlcR-regulated-protein-PRP2
MNPILTAAKQLLHKEEKILSTLKCSLTGYMITHKVPYPGMLLATNQRLLFFSQYKNTFIAEFDYEKILSIETKRRIFDKKIIFYYEDEHITLGYITSSNVEAFIDLLRRKCKISTNS
>NZ_CP017577.1|WP_000620467.1|5295095_5295605_+|GNAT-family-N-acetyltransferase
MIRLVKETDAEAIMNIRKEIILSETTTKFFIVSPKKLPNDMNAEREKIRKSNEKGNLYIVYEVDGKVVGFLIFNRYELERLQHAGTMGMGIKEAYCNQGIGTKLIEFLISWAKGQKGLEKICLGVVSVNDRAIKVYKRMGFVEEGRQRKQIKYEDGSYGDDVLMGFYIE
>NZ_CP017577.1|WP_000103715.1|5295799_5296813_+|LacI-family-DNA-binding-transcriptional-regulator
MSTIEDVAKLAGLSRTTVSRVINNHPYVSDEKKKRVQLAMKHLGFVPNSAARRLRKQKTETIAVLVPRITNPFFSRFIEAIEIAASEHKYKLIICQTRYLPEKEMEYLQLLSTKQVDGIILCSLENPWEDVEPYLQHGPIVLCNEYIEEANIPTVKFDHAQGAYIAAKHVLDQGYRNLIFCRGNETKVVSQQRKMGFLRAITEKSRQVEAIDFLENAFSWEDGKRIFHEVLKDKKNPTAILAGGDEVAAGIISEAKRHNWSIPDDLAVIGFDNQILSQITEPGITTIEQPIDEMARKVVDLMMDKIHTKNYRKKELYEFELELLVKGSTMKDKMLLA
>NZ_CP017577.1|WP_000567010.1|5296852_5296981_-|YhfH-family-protein
MIDQPMEFFRNLPTKTCAHCGKEIDEQHEAYHNKCDDCVHEE
>NZ_CP017577.1|WP_000784676.1|5297161_5297896_+|MBL-fold-metallo-hydrolase
MKMTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATTRQLPELPIYGHTFDENGFHSLTHEPHTKGIPYNPEETLQIGTFSISFLKTVHPVTCFAMRITAGNDIVVYSADSSYIPEFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDANVKELLLTHLPHTGNPSDLVTEAKQIFSGHITLAHSGYVWNS
>NZ_CP017577.1|WP_000897277.1|5297905_5298895_+|lipoate--protein-ligase
MLFIDNKGITDPRINLAIEEYCVKNLDINETYLLFYINEPSIIIGKNQNTVEEINADYVKEKGIHVVRRLSGGGAVYHDLGNLNFSFITKDDGDSFSNFKKFTEPVTKALSKLGVNAELSGRNDILAEGRKISGNAQFATKGRMFSHGTLLFDSEIDHVVSALKVKMDKIQSKGIKSIRSRVANITEFLNEEMTTEEFRQLLLETIFEGETEIPTYELTENDWKEIHKLSEERYQNWDWNYGKSPKFNLQHSHRFPVGQVDVRLEVKKGTVTECKIYGDFFGSLDVHDIEERLTGVQFDKDAFTAALEGVDIARYFGNITTEDFLHLFF
>NZ_CP017577.1|WP_063220298.1|5299034_5299463_+|hypothetical-protein
MKRVMYVILLLSFVIGMTACNSGLPSSRTILSIGKPAEDNVIYFTHTDNRRKIQEIQDMFQNKKWKRNETFSTVNKTPDVVFSIDEDNTGLPTLYVTVYFHEDGADALNLHGEHTTLNKEELNKLREKMNAYYPKMISGLVS
>NZ_CP017577.1|WP_006916060.1|5299624_5301157_+|fatty-acid--CoA-ligase-family-protein
MNLVQSLAETAKKKGDKPAYIFMDQSVSYDQLNKMVTRFSGNLAEMGIGKGDNVALVVGNSPHFLVGLYGTMKAGATVIPVNPIYTADEMHYILQNGDVKTIIVLDVLLPVIQSLTTRLPSLENIIICETSSDFNHTETEKMKTFTSFVGTGDTTYEGPELDEEDVAVILYTSGTTGKPKGAMLTHKNLYSNASDVASYLQYTADDRVVAALPMFHVFCLTVAVNAPIVNGATILMLPKFSPKEVFRICRTYEPTIFAGVPTMYNYLYLFEEASAEDVKTLRLCISGGASMPVALLQNFEKRFNVIVSEGYGLSEASPVTCFNPLDRPRKPGSIGTNIWHVENKIVNELGEEVPVGAVGELIVRGPNVMKGYYNAPEDTAATLKDGWLYTGDLAKMDEEGYFYIVDRKKDIVLVGGYNVYPREVEEVLYTHESVAEVVVIGVPDENLGEAVRAYVVLKQTNVTEEELMHYCTLHLAKYKVPKSIEFLIELPKNTTGKLLRRALREKAMQV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017577_2	2.1\|3979623\|31\|NZ_CP017577\|CRISPRCasFinder	3979623-3979653	31	JX238501	Bacillus phage phiAGATE, complete genome	124559-124589	8	0.742
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812210	Flavobacterium phage vB_FspS_hemulen9-1, complete genome	22854-22887	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812215	Flavobacterium phage vB_FspS_lillamy9-4, complete genome	22191-22224	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812216	Flavobacterium phage vB_FspS_lillamy9-5, complete genome	22191-22224	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NC_048835	Flavobacterium phage vB_FspS_lillamy9-1, complete genome	22191-22224	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812213	Flavobacterium phage vB_FspS_lillamy9-2, complete genome	22191-22224	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812230	Flavobacterium phage vB_FspS_sniff9-2, complete genome	21831-21864	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812209	Flavobacterium phage vB_FspS_hemulen6-2, complete genome	22983-23016	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812218	Flavobacterium phage vB_FspS_lillamy9-7, complete genome	21454-21487	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812233	Flavobacterium phage vB_FspS_snork9-1, complete genome	22007-22040	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812219	Flavobacterium phage vB_FspS_morran9-1, complete genome	22308-22341	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812217	Flavobacterium phage vB_FspS_lillamy9-6, complete genome	21930-21963	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NC_048840	Flavobacterium phage vB_FspS_snork6-1, complete genome	22137-22170	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NC_048839	Flavobacterium phage vB_FspS_sniff9-1, complete genome	22057-22090	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NC_048842	Flavobacterium phage vB_FspS_stinky9-1, complete genome	21673-21706	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812232	Flavobacterium phage vB_FspS_snork6-2, complete genome	21655-21688	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	MN812208	Flavobacterium phage vB_FspS_hemulen6-1, complete genome	22983-23016	9	0.735
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47181-47214	11	0.676
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47565-47598	11	0.676
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47949-47982	11	0.676
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	48333-48366	11	0.676
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	48717-48750	11	0.676
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	49101-49134	11	0.676
NZ_CP017577_2	2.2\|3979677\|34\|NZ_CP017577\|CRISPRCasFinder	3979677-3979710	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	49485-49518	11	0.676

1. spacer 2.1|3979623|31|NZ_CP017577|CRISPRCasFinder matches to JX238501 (Bacillus phage phiAGATE, complete genome) position: , mismatch: 8, identity: 0.742

ttcttcttttttgtcactagttgaaccgctt	CRISPR spacer
ctaaccttttttgccactagttaaaccgccc	Protospacer
.*  .********.********.******..

2. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812210 (Flavobacterium phage vB_FspS_hemulen9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

3. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812215 (Flavobacterium phage vB_FspS_lillamy9-4, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

4. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812216 (Flavobacterium phage vB_FspS_lillamy9-5, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

5. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NC_048835 (Flavobacterium phage vB_FspS_lillamy9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

6. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812213 (Flavobacterium phage vB_FspS_lillamy9-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

7. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812230 (Flavobacterium phage vB_FspS_sniff9-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

8. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812209 (Flavobacterium phage vB_FspS_hemulen6-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

9. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812218 (Flavobacterium phage vB_FspS_lillamy9-7, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

10. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812233 (Flavobacterium phage vB_FspS_snork9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

11. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812219 (Flavobacterium phage vB_FspS_morran9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

12. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812217 (Flavobacterium phage vB_FspS_lillamy9-6, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

13. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NC_048840 (Flavobacterium phage vB_FspS_snork6-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

14. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NC_048839 (Flavobacterium phage vB_FspS_sniff9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

15. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NC_048842 (Flavobacterium phage vB_FspS_stinky9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

16. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812232 (Flavobacterium phage vB_FspS_snork6-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

17. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to MN812208 (Flavobacterium phage vB_FspS_hemulen6-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

18. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

19. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

20. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

21. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

22. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

23. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

24. spacer 2.2|3979677|34|NZ_CP017577|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

694204 : 702254

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000755526.1\|694204_695446_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	9.7e-11	31.8
WP_001194314.1\|695545_696310_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000453883.1\|696550_698311_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.8e-273	98.2
WP_000612414.1\|698396_699074_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.1e-122	99.1
WP_065211678.1\|699070_700144_+	HAMP domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	8.8e-186	97.2
WP_000818985.1\|700371_701091_+	3-ketoacyl-ACP reductase	W8CYX9	Bacillus_phage	5.9e-61	100.0
WP_001258540.1\|701381_702254_+	aminoglycoside 6-adenylyltransferase	E4ZFP8	Streptococcus_phage	1.6e-65	44.8

DBSCAN-SWA_2

1301052 : 1382353

Bacillus_phage(71.05%)

bacteriocin,holin,tail,head,transposase,portal,capsid,terminase,protease,integrase,tRNA

attL 1342994:1343010|attR 1357709:1357725

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061457221.1\|1301052_1301709_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000290886.1\|1302030_1302234_+	hypothetical protein	NA	NA	NA	NA
WP_002195526.1\|1302261_1302504_-	hypothetical protein	NA	NA	NA	NA
WP_065212712.1\|1302614_1303541_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_065212711.1\|1303622_1304480_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001021703.1\|1304535_1305033_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_000397610.1\|1305289_1305919_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001079450.1\|1306171_1306873_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000492432.1\|1306869_1307772_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000551042.1\|1307914_1308085_+	DUF2197 domain-containing protein	NA	NA	NA	NA
WP_000558598.1\|1308492_1310046_+\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_001128402.1\|1310105_1310534_-	cell wall hydrolase	NA	NA	NA	NA
WP_000285667.1\|1310684_1311599_+	acetamidase/formamidase family protein	NA	NA	NA	NA
WP_000238994.1\|1311726_1312434_+	response regulator transcription factor	NA	NA	NA	NA
WP_002183605.1\|1312430_1313414_+	sensor histidine kinase	NA	NA	NA	NA
WP_000376264.1\|1313650_1314277_-	hypothetical protein	NA	NA	NA	NA
WP_000661373.1\|1314834_1316463_+	ABC-F type ribosomal protection protein	A0A1B0RXA0	Streptococcus_phage	7.8e-53	34.3
WP_000343079.1\|1316483_1317068_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_065212710.1\|1317327_1318098_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-32	39.9
WP_000144161.1\|1318072_1320007_+	ABC transporter permease	NA	NA	NA	NA
WP_000744466.1\|1320075_1320747_+	hypothetical protein	NA	NA	NA	NA
WP_001165491.1\|1320812_1321154_-	DUF3914 domain-containing protein	NA	NA	NA	NA
WP_000517073.1\|1321433_1322675_+	lipase	NA	NA	NA	NA
WP_000701770.1\|1322762_1323788_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_065212709.1\|1323877_1325326_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_000690435.1\|1325330_1326245_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_000144509.1\|1326551_1327241_+	thiaminase II	NA	NA	NA	NA
WP_002082716.1\|1327638_1327902_+	DUF3937 domain-containing protein	NA	NA	NA	NA
WP_065212708.1\|1328460_1328781_+\|bacteriocin	heterocycloanthracin/sonorensin family bacteriocin	NA	NA	NA	NA
WP_002041181.1\|1329274_1329760_+	hypothetical protein	NA	NA	NA	NA
WP_065212707.1\|1330071_1330773_+	DUF3962 domain-containing protein	NA	NA	NA	NA
WP_065212706.1\|1330811_1331921_-\|integrase	site-specific integrase	A0A0U3U8Y8	Bacillus_phage	6.4e-147	79.1
WP_065212705.1\|1332466_1333618_+	hypothetical protein	NA	NA	NA	NA
WP_000720921.1\|1333655_1333802_+	hypothetical protein	NA	NA	NA	NA
WP_065212704.1\|1334122_1334476_-	helix-turn-helix transcriptional regulator	A0A0U3SD25	Bacillus_phage	2.8e-48	86.2
WP_000854271.1\|1334676_1334868_+	helix-turn-helix transcriptional regulator	A0A0U3SLC2	Bacillus_phage	8.3e-23	85.2
WP_000522030.1\|1334922_1335189_+	helix-turn-helix domain-containing protein	A0A0U3ULL9	Bacillus_phage	2.9e-37	94.1
WP_065212703.1\|1335410_1336478_+	DnaD domain protein	H0USU2	Bacillus_phage	3.8e-56	61.4
WP_000799091.1\|1336481_1336760_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	2.7e-14	64.4
WP_065212702.1\|1336752_1337112_+	cell division protein SepF	A0A1B1P7A1	Bacillus_phage	1.2e-30	52.6
WP_065212701.1\|1337131_1337299_+	DUF3954 domain-containing protein	A0A1B0T6B8	Bacillus_phage	1.6e-14	66.0
WP_065212700.1\|1337324_1337576_+	hypothetical protein	A0A0K2CNP4	Brevibacillus_phage	2.5e-06	34.9
WP_065212699.1\|1337596_1338079_+	nucleoside triphosphate pyrophosphohydrolase family protein	A0A0U4IBD0	Bacillus_phage	9.8e-20	47.7
WP_065212698.1\|1338461_1338656_-	hypothetical protein	NA	NA	NA	NA
WP_065212697.1\|1339669_1340839_+	hypothetical protein	F2Y2K8	Organic_Lake_phycodnavirus	1.9e-08	26.7
WP_065212696.1\|1341288_1341975_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_065212695.1\|1342595_1343225_+	hypothetical protein	NA	NA	NA	NA
1342994:1343010	attL	NA	NA	NA	NA
WP_065212694.1\|1343581_1344064_+	ArpU family transcriptional regulator	H0USV3	Bacillus_phage	1.2e-70	81.9
WP_065212693.1\|1344063_1344606_+\|integrase	site-specific integrase	W8CYP1	Bacillus_phage	1.5e-88	90.6
WP_065212692.1\|1344819_1345770_+	nucleoside hydrolase	NA	NA	NA	NA
WP_086426929.1\|1346431_1347154_+	hypothetical protein	NA	NA	NA	NA
WP_061113368.1\|1347514_1347724_+	hypothetical protein	A0A0S2GM40	Bacillus_phage	2.7e-27	92.8
WP_065212691.1\|1347862_1348117_+	hypothetical protein	A0A2H4J3B1	uncultured_Caudovirales_phage	1.4e-41	92.9
WP_065212690.1\|1348106_1348484_+	HNH endonuclease	H0USW1	Bacillus_phage	7.6e-68	97.6
WP_000251640.1\|1348611_1349115_+\|terminase	phage terminase small subunit P27 family	A0A0S2GLF2	Bacillus_phage	8.8e-88	98.8
WP_065212689.1\|1349116_1350811_+\|terminase	terminase large subunit	H0USW3	Bacillus_phage	2.2e-311	98.0
WP_065212688.1\|1350999_1352253_+\|portal	phage portal protein	A0A2H4J371	uncultured_Caudovirales_phage	1.0e-230	95.0
WP_065212687.1\|1352239_1352950_+\|protease	Clp protease ClpP	W8CYT5	Bacillus_phage	1.1e-123	95.8
WP_065212686.1\|1352987_1354160_+\|capsid	phage major capsid protein	W8CYN2	Bacillus_phage	2.8e-201	93.0
WP_065212685.1\|1354180_1354468_+\|head,tail	phage gp6-like head-tail connector protein	H0USW7	Bacillus_phage	1.7e-43	97.9
WP_065212684.1\|1354454_1354778_+\|head	phage head closure protein	H0USW8	Bacillus_phage	7.0e-54	94.4
WP_060851857.1\|1354770_1355205_+	HK97 gp10 family phage protein	H0USW9	Bacillus_phage	9.6e-75	96.5
WP_065212683.1\|1355201_1355561_+	DUF3168 domain-containing protein	A0A0S2GLE3	Bacillus_phage	5.2e-58	94.1
WP_000896776.1\|1355561_1356167_+\|tail	tail protein	A0A288WG55	Bacillus_phage	2.6e-94	88.1
WP_000779162.1\|1356216_1356534_+	hypothetical protein	W8CYN3	Bacillus_phage	3.1e-46	87.6
WP_000344056.1\|1356563_1356740_+	hypothetical protein	Q3HL07	Bacillus_phage	1.4e-13	67.2
WP_065212682.1\|1356755_1360607_+\|tail	phage tail tape measure protein	A0A2H4J380	uncultured_Caudovirales_phage	0.0e+00	92.0
1357709:1357725	attR	NA	NA	NA	NA
WP_081283938.1\|1360621_1362103_+\|tail	phage tail protein	A0A0S2GLF9	Bacillus_phage	2.2e-288	96.8
WP_065212681.1\|1362099_1366137_+	hypothetical protein	W8CYT7	Bacillus_phage	0.0e+00	83.7
WP_065212680.1\|1366176_1366602_+\|holin	phage holin family protein	A0A0S2MVC4	Bacillus_phage	3.5e-69	94.3
WP_065212679.1\|1366601_1367534_+	N-acetylmuramoyl-L-alanine amidase	A0A0S2MVR5	Bacillus_phage	4.3e-165	88.1
WP_065212678.1\|1367617_1367914_-	hypothetical protein	NA	NA	NA	NA
WP_065212677.1\|1368589_1369291_+	hypothetical protein	NA	NA	NA	NA
WP_065212676.1\|1369416_1370301_+	hypothetical protein	NA	NA	NA	NA
WP_065212675.1\|1370672_1372355_+	RNAseH domain-containing protein	NA	NA	NA	NA
WP_000732188.1\|1372561_1373326_+	DUF3959 family protein	NA	NA	NA	NA
WP_000905568.1\|1373471_1373888_+	DUF3995 domain-containing protein	NA	NA	NA	NA
WP_000878369.1\|1374008_1374212_+	hypothetical protein	NA	NA	NA	NA
WP_000362067.1\|1374540_1374753_-	hypothetical protein	NA	NA	NA	NA
WP_000565686.1\|1374962_1375967_+	DUF1835 domain-containing protein	NA	NA	NA	NA
WP_000282687.1\|1376112_1376517_+	hypothetical protein	NA	NA	NA	NA
WP_065212674.1\|1376676_1377912_+	cytochrome P450	NA	NA	NA	NA
WP_000106396.1\|1378179_1379463_+	MFS transporter	NA	NA	NA	NA
WP_001069204.1\|1379452_1380085_+	Vat family streptogramin A O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	1.6e-25	43.1
WP_000046095.1\|1380155_1380311_+	DUF1540 domain-containing protein	NA	NA	NA	NA
WP_002196012.1\|1380379_1380553_-	hypothetical protein	NA	NA	NA	NA
WP_000204967.1\|1380479_1380749_+	cytochrome P450	NA	NA	NA	NA
WP_000606464.1\|1380866_1381268_+\|transposase	IS200/IS605 family transposase	Q332K6	Clostridium_botulinum_C_phage	2.0e-50	71.2
WP_000084148.1\|1381273_1382353_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1C9EG99	Acidianus_two-tailed_virus	5.1e-16	27.2

DBSCAN-SWA_3

2434897 : 2446629

Bacillus_phage(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000413738.1\|2434897_2435518_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	8.2e-19	62.2
WP_000976237.1\|2435608_2436412_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_000031383.1\|2436412_2436955_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_001102628.1\|2436947_2437271_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_000725955.1\|2438309_2439365_-	SH3 domain-containing protein	A0A1B0T6C8	Bacillus_phage	2.4e-143	69.2
WP_000570187.1\|2439361_2439601_-\|holin	holin	A0A0A7AR38	Bacillus_phage	1.3e-25	78.7
WP_000348875.1\|2439600_2439837_-	hypothetical protein	A0A2H4J382	uncultured_Caudovirales_phage	1.8e-14	87.2
WP_002026207.1\|2439914_2440121_-	hypothetical protein	NA	NA	NA	NA
WP_001051360.1\|2440469_2441291_-	M23 family metallopeptidase	A0A218KCJ1	Bacillus_phage	1.2e-20	38.6
WP_025921790.1\|2441640_2442618_-	lysozyme family protein	A0A223LKM8	Bacillus_phage	1.1e-33	43.9
WP_000464425.1\|2442856_2443243_-	DUF1492 domain-containing protein	A0A288WG73	Bacillus_phage	2.6e-47	71.4
WP_000511420.1\|2443361_2444234_-	DnaD domain protein	A0A2H4J394	uncultured_Caudovirales_phage	6.8e-96	65.3
WP_001189065.1\|2444386_2444581_-	hypothetical protein	A0A1C8E9A1	Bacillus_phage	1.7e-15	71.0
WP_063220698.1\|2444592_2445351_-	antirepressor	A0A2H4JBC7	uncultured_Caudovirales_phage	1.2e-96	69.0
WP_000283431.1\|2445553_2445766_-	hypothetical protein	A6M975	Geobacillus_virus	1.6e-11	63.0
WP_000241483.1\|2445957_2446629_+	helix-turn-helix domain-containing protein	A0A2H4J441	uncultured_Caudovirales_phage	5.7e-34	41.0

DBSCAN-SWA_4

3254748 : 3262434

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000221062.1\|3254748_3255672_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-45	43.5
WP_000247675.1\|3255797_3256733_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-21	24.7
WP_000018035.1\|3256734_3257427_-	response regulator transcription factor	B5LWA6	Feldmannia_species_virus	1.4e-06	28.8
WP_001014310.1\|3257769_3257964_+	YwbE family protein	NA	NA	NA	NA
WP_065211809.1\|3258002_3259202_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	1.8e-70	41.0
WP_000587818.1\|3259497_3259821_+	heme oxygenase	NA	NA	NA	NA
WP_001086126.1\|3259893_3260658_-	class B sortase	NA	NA	NA	NA
WP_000403758.1\|3260690_3261461_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.7e-13	27.1
WP_001036848.1\|3261450_3262434_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	27.2

DBSCAN-SWA_5

4451621 : 4459569

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000917311.1\|4451621_4451906_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	1.2e-20	54.8
WP_065211772.1\|4451944_4453579_+	chaperonin GroEL	A0A219YK78	uncultured_virus	4.5e-157	58.0
WP_000743909.1\|4453985_4455524_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	8.8e-22	31.7
WP_000833082.1\|4455908_4457234_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	6.4e-45	30.1
WP_000929885.1\|4457378_4458080_+	response regulator transcription factor	W8CYM9	Bacillus_phage	7.3e-40	36.9
WP_000719222.1\|4458063_4459569_+	aminopeptidase AmpS	W8CYF6	Bacillus_phage	1.2e-31	30.3

DBSCAN-SWA_6

4507401 : 4515777

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000625682.1\|4507401_4508709_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.9e-21	25.3
WP_001170544.1\|4508797_4509517_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	4.0e-49	44.3
WP_000278823.1\|4509509_4509764_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666774.1\|4509760_4510444_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_000055564.1\|4510427_4512647_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	2.0e-163	41.2
WP_000879025.1\|4512631_4514047_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.3e-55	35.4
WP_001262439.1\|4514152_4515193_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	1.2e-67	45.9
WP_000088589.1\|4515189_4515777_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.1e-28	37.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017574

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017577

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection