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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021744 Streptomyces albireticuli strain MDJK11 chromosome, complete genome 8 crisprs csa3,cas4,DEDDh,DinG,WYL,cas14k,cas3 0 2 4 0

Results visualization

1. NZ_CP021744
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021744_1 526552-526651 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021744_2 2235703-2235794 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021744_3 5288078-5288167 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021744_4 5344203-5344317 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021744_5 5462789-5462894 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021744_6 5631498-5631582 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021744_7 5711310-5711404 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021744_8 6614766-6614879 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021744_3 3.1|5288107|32|NZ_CP021744|CRISPRCasFinder 5288107-5288138 32 NZ_CP020372 Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence 211720-211751 7 0.781
NZ_CP021744_4 4.1|5344240|41|NZ_CP021744|CRISPRCasFinder 5344240-5344280 41 NZ_CP018784 Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence 253734-253774 9 0.78
NZ_CP021744_3 3.1|5288107|32|NZ_CP021744|CRISPRCasFinder 5288107-5288138 32 NZ_HG938356 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence 1614771-1614802 10 0.688
NZ_CP021744_4 4.1|5344240|41|NZ_CP021744|CRISPRCasFinder 5344240-5344280 41 NZ_CP018784 Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence 265173-265213 10 0.756

1. spacer 3.1|5288107|32|NZ_CP021744|CRISPRCasFinder matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 7, identity: 0.781

gggccgggcgggcgctctccacctcc-cgataa	CRISPR spacer
ccgccaggcgggcgcgctccacctcctcggtc-	Protospacer
  ***.********* ********** **.*  

2. spacer 4.1|5344240|41|NZ_CP021744|CRISPRCasFinder matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 9, identity: 0.78

gggagcgcgatcctctgtagctcaattggcagagcagccgg	CRISPR spacer
acacccttgatcccctgtagctcaattggcagagcacccgg	Protospacer
. .  * .*****.********************** ****

3. spacer 3.1|5288107|32|NZ_CP021744|CRISPRCasFinder matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 10, identity: 0.688

gggccgggcgggcgctctccacctcccgataa	CRISPR spacer
ctactggccgggcgcactccacctcccgcgtc	Protospacer
  .*.** ******* ************    

4. spacer 4.1|5344240|41|NZ_CP021744|CRISPRCasFinder matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 10, identity: 0.756

gggagcgcgatcctctgtagctcaattggcagagcagccgg	CRISPR spacer
tgcgctgcacgcctccgtagctcaattggcagagcatccgg	Protospacer
 * . .**.  ****.******************** ****

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 485935 : 522248 27 Bacillus_phage(25.0%) tail,plate,holin NA
DBSCAN-SWA_2 1366589 : 1377943 16 Mycobacterium_phage(60.0%) NA NA
DBSCAN-SWA_3 3576243 : 3630371 44 Streptomyces_phage(46.67%) holin,integrase,protease,tail attL 3574575:3574591|attR 3584508:3584524
DBSCAN-SWA_4 8000302 : 8070755 48 Mycobacterium_phage(50.0%) bacteriocin,integrase,transposase,tail attL 8056609:8056630|attR 8060912:8060933
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage