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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017236 Yersinia ruckeri strain QMA0440 isolate 14/0165-5k chromosome, complete genome 2 crisprs cas3,DEDDh,csa3,DinG,c2c9_V-U4 2 0 8 0

Results visualization

1. NZ_CP017236
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017236_1 2703804-2703886 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017236_2 2977842-2978067 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017236_2 2.1|2977900|38|NZ_CP017236|PILER-CR 2977900-2977937 38 NZ_CP017236.1 2978068-2978105 1 0.974
NZ_CP017236_2 2.2|2977996|63|NZ_CP017236|PILER-CR 2977996-2978058 63 NZ_CP017236.1 2978115-2978177 4 0.937

1. spacer 2.1|2977900|38|NZ_CP017236|PILER-CR matches to position: 2978068-2978105, mismatch: 1, identity: 0.974

gcccttcgggccgttgctaaagcaacgttgtctcgcta	CRISPR spacer
gcccttcgggtcgttgctaaagcaacgttgtctcgcta	Protospacer
**********.***************************

2. spacer 2.2|2977996|63|NZ_CP017236|PILER-CR matches to position: 2978115-2978177, mismatch: 4, identity: 0.937

cgaacttccgaccactcggttcgtagcaagtgtcattaggataccgctaaaagcagaaaa	CRISPR spacer
cgaacttccgaccgctcggttcgtagcaagtgtcattaggataccgctaaaagcagaaaa	Protospacer
*************.**********************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 318488 : 332779 13 Organic_Lake_phycodnavirus(100.0%) tail NA
DBSCAN-SWA_2 1306366 : 1344854 49 Escherichia_phage(25.0%) terminase,capsid,integrase,lysis,holin,transposase attL 1300025:1300042|attR 1336568:1336585
DBSCAN-SWA_3 1574026 : 1655121 85 Escherichia_phage(18.6%) terminase,protease,capsid,integrase,holin,transposase attL 1629129:1629144|attR 1634549:1634564
DBSCAN-SWA_4 1674064 : 1692728 17 Tupanvirus(25.0%) plate,tRNA,integrase attL 1681425:1681448|attR 1686089:1686112
DBSCAN-SWA_5 2130324 : 2201487 74 Yersinia_phage(31.91%) protease,terminase,head,capsid,integrase,tRNA,tail,holin,transposase,portal attL 2151199:2151258|attR 2197732:2197916
DBSCAN-SWA_6 2353411 : 2362965 8 Brazilian_cedratvirus(16.67%) protease,tRNA NA
DBSCAN-SWA_7 2594971 : 2716427 152 Salmonella_phage(22.54%) terminase,protease,head,tRNA,capsid,integrase,tail,holin,plate,transposase,portal attL 2642260:2642275|attR 2716562:2716574
DBSCAN-SWA_8 3047637 : 3056381 7 Escherichia_phage(16.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage