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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021819 Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence 0 crisprs DEDDh 0 0 0 0
NZ_CP021821 Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence 0 crisprs DEDDh,RT 0 0 1 0
NZ_CP021820 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence 0 crisprs csa3,RT 0 0 146 0
NZ_CP021818 Sinorhizobium meliloti strain M162 chromosome, complete genome 2 crisprs WYL,cas3,csa3 0 0 7 0

Results visualization

1. NZ_CP021820
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2752 3 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_2 11283 : 13749 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_3 20400 : 21081 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_4 29278 : 39081 8 Bacillus_virus(20.0%) NA NA
DBSCAN-SWA_5 43978 : 45529 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_6 54763 : 55222 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_7 63360 : 67007 3 Microcystis_phage(50.0%) NA NA
DBSCAN-SWA_8 71432 : 72461 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_9 83244 : 84831 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_10 115988 : 118607 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_11 131240 : 131963 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_12 146333 : 147437 1 Stenotrophomonas_phage(100.0%) NA NA
DBSCAN-SWA_13 151710 : 153935 2 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_14 158434 : 162154 5 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_15 174371 : 176473 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_16 184685 : 185399 1 Mollivirus(100.0%) NA NA
DBSCAN-SWA_17 190319 : 191369 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_18 197361 : 198297 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_19 201381 : 202730 2 Anomala_cuprea_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_20 209337 : 209868 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_21 213192 : 220749 7 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_22 232251 : 233898 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_23 239768 : 245212 4 Acinetobacter_phage(66.67%) NA NA
DBSCAN-SWA_24 251901 : 255761 5 Escherichia_phage(66.67%) NA NA
DBSCAN-SWA_25 263065 : 266559 3 Cedratvirus(50.0%) NA NA
DBSCAN-SWA_26 283684 : 285502 1 Ostreococcus_lucimarinus_virus(100.0%) NA NA
DBSCAN-SWA_27 290175 : 292152 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_28 305520 : 310840 4 Trichoplusia_ni_ascovirus(50.0%) NA NA
DBSCAN-SWA_29 317093 : 319965 3 Paenibacillus_phage(50.0%) transposase NA
DBSCAN-SWA_30 324867 : 325695 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_31 329953 : 333624 3 Ochrobactrum_phage(66.67%) NA NA
DBSCAN-SWA_32 364131 : 378819 11 Aureococcus_anophage(16.67%) NA NA
DBSCAN-SWA_33 382638 : 385970 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_34 398249 : 399920 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_35 414925 : 415948 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_36 420858 : 421944 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_37 427781 : 429305 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_38 434390 : 435188 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_39 449451 : 457278 4 Hokovirus(100.0%) NA NA
DBSCAN-SWA_40 469440 : 477828 7 Ochrobactrum_phage(40.0%) NA NA
DBSCAN-SWA_41 500969 : 503685 3 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_42 507006 : 510562 3 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_43 523572 : 525090 2 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_44 528282 : 529017 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_45 538909 : 542069 3 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_46 545220 : 546255 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_47 552297 : 552975 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_48 557961 : 560780 2 Brazilian_cedratvirus(50.0%) NA NA
DBSCAN-SWA_49 564333 : 565875 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_50 570398 : 570950 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_51 585640 : 594048 10 Catovirus(25.0%) NA NA
DBSCAN-SWA_52 597073 : 600618 3 Ostreococcus_tauri_virus(50.0%) NA NA
DBSCAN-SWA_53 605423 : 614221 8 Escherichia_phage(60.0%) NA NA
DBSCAN-SWA_54 617915 : 619844 2 Trichoplusia_ni_ascovirus(50.0%) NA NA
DBSCAN-SWA_55 626830 : 631637 4 Organic_Lake_phycodnavirus(33.33%) NA NA
DBSCAN-SWA_56 665875 : 666943 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_57 676597 : 677119 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_58 680184 : 689083 12 Pseudomonas_phage(20.0%) NA NA
DBSCAN-SWA_59 695184 : 696297 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_60 703122 : 703764 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_61 707887 : 711411 5 Niemeyer_virus(50.0%) NA NA
DBSCAN-SWA_62 721834 : 723160 2 Brazilian_cedratvirus(50.0%) NA NA
DBSCAN-SWA_63 728221 : 729718 1 Cedratvirus(100.0%) NA NA
DBSCAN-SWA_64 733431 : 738189 4 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_65 744485 : 745370 1 Mycobacterium_virus(100.0%) NA NA
DBSCAN-SWA_66 752450 : 753987 3 Sinorhizobium_phage(100.0%) NA NA
DBSCAN-SWA_67 758840 : 760261 2 Sinorhizobium_phage(50.0%) NA NA
DBSCAN-SWA_68 764708 : 766868 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_69 771870 : 773406 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_70 786885 : 788400 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_71 795725 : 796475 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_72 808566 : 809397 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_73 813847 : 821331 6 Bacillus_virus(33.33%) transposase NA
DBSCAN-SWA_74 826759 : 831611 3 Acinetobacter_phage(66.67%) NA NA
DBSCAN-SWA_75 852029 : 852809 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_76 868222 : 868891 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_77 872037 : 873213 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_78 884585 : 887906 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_79 905113 : 911485 6 uncultured_Caudovirales_phage(20.0%) NA NA
DBSCAN-SWA_80 917849 : 921447 3 Sinorhizobium_phage(50.0%) NA NA
DBSCAN-SWA_81 928067 : 929156 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_82 941817 : 947371 5 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_83 955929 : 958413 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_84 968777 : 977075 9 uncultured_virus(40.0%) NA NA
DBSCAN-SWA_85 992546 : 993698 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_86 1000651 : 1004113 3 Bacillus_virus(50.0%) transposase NA
DBSCAN-SWA_87 1013963 : 1022359 8 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_88 1027161 : 1028052 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_89 1031986 : 1033498 1 Cedratvirus(100.0%) NA NA
DBSCAN-SWA_90 1036816 : 1037875 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_91 1063156 : 1064650 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_92 1070887 : 1072621 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_93 1077330 : 1081614 5 Enterobacteria_phage(60.0%) NA NA
DBSCAN-SWA_94 1091719 : 1093489 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_95 1108246 : 1112287 5 Rhizobium_phage(50.0%) NA NA
DBSCAN-SWA_96 1115454 : 1117203 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_97 1125114 : 1126716 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_98 1132328 : 1144880 9 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_99 1151324 : 1152164 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_100 1163234 : 1168228 4 Catovirus(50.0%) transposase NA
DBSCAN-SWA_101 1171244 : 1173164 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_102 1178479 : 1179613 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_103 1184795 : 1189537 4 Mycoplasma_phage(50.0%) NA NA
DBSCAN-SWA_104 1194942 : 1195734 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_105 1204291 : 1204771 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_106 1210763 : 1215485 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_107 1219227 : 1220520 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_108 1225546 : 1226575 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_109 1243319 : 1245212 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_110 1248255 : 1249632 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_111 1258694 : 1259885 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_112 1270706 : 1271924 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_113 1275720 : 1277919 1 Megavirus(100.0%) NA NA
DBSCAN-SWA_114 1281990 : 1287445 5 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_115 1295171 : 1300587 7 Mycoplasma_phage(33.33%) NA NA
DBSCAN-SWA_116 1304835 : 1305942 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_117 1309350 : 1316846 8 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_118 1325752 : 1326850 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_119 1335150 : 1335921 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_120 1339866 : 1340877 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_121 1359148 : 1361059 1 Sinorhizobium_phage(100.0%) NA NA
DBSCAN-SWA_122 1364421 : 1366095 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_123 1387383 : 1388901 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_124 1395093 : 1396662 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_125 1402523 : 1406221 5 Sinorhizobium_phage(50.0%) NA NA
DBSCAN-SWA_126 1418984 : 1419686 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_127 1423141 : 1431375 7 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_128 1442714 : 1443661 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_129 1451970 : 1460907 9 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_130 1480791 : 1481898 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_131 1490135 : 1492951 2 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_132 1497394 : 1499182 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_133 1502801 : 1513397 8 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_134 1523851 : 1531947 10 Pseudomonas_phage(33.33%) transposase NA
DBSCAN-SWA_135 1544914 : 1545925 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_136 1560455 : 1565992 5 Trichoplusia_ni_ascovirus(33.33%) NA NA
DBSCAN-SWA_137 1569116 : 1570658 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_138 1579933 : 1585288 5 Chrysochromulina_ericina_virus(66.67%) NA NA
DBSCAN-SWA_139 1592410 : 1593940 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_140 1598181 : 1603466 4 Phaeocystis_globosa_virus(33.33%) NA NA
DBSCAN-SWA_141 1612630 : 1618850 5 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_142 1626361 : 1630608 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_143 1643693 : 1644479 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_144 1648410 : 1652787 4 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_145 1659939 : 1660770 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_146 1671929 : 1677801 5 Acinetobacter_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP021821
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 310445 : 362168 37 uncultured_virus(21.43%) holin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP021818
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021818_1 218709-218855 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021818_2 2103475-2103587 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 857702 : 866976 13 Burkholderia_virus(25.0%) portal,tail,integrase,head,capsid,terminase attL 857567:857584|attR 875191:875208
DBSCAN-SWA_2 1196234 : 1238270 58 Sinorhizobium_phage(71.79%) terminase,head,tail NA
DBSCAN-SWA_3 1746483 : 1757573 12 uncultured_Mediterranean_phage(80.0%) tRNA NA
DBSCAN-SWA_4 2716327 : 2725962 7 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_5 2741762 : 2807286 60 Streptococcus_phage(11.11%) tRNA,protease,transposase,holin NA
DBSCAN-SWA_6 3143456 : 3157603 14 EBPR_podovirus(36.36%) portal,tail,terminase NA
DBSCAN-SWA_7 3474274 : 3519774 51 Sulfitobacter_phage(22.22%) portal,tail,integrase,transposase,protease,terminase attL 3482579:3482623|attR 3519835:3519879
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage