CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	0 crisprs	RT,DEDDh,PD-DExK,csa3	0	2
NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	3 crisprs	csa3	3	0
NZ_CP021829	Sinorhizobium meliloti strain HM006 chromosome, complete genome	4 crisprs	DEDDh,WYL,cas3,csa3,RT	0	8
NZ_CP021832	Sinorhizobium meliloti strain HM006 plasmid accessoryA, complete sequence	0 crisprs	RT,WYL,csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

450851 : 526617

Corynebacterium_phage(22.22%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014528301.1\|450851_452051_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	5.7e-93	47.9
WP_027990595.1\|452579_453560_-	nod/exo genes transcriptional regulator SyrM	NA	NA	NA	NA
WP_086017713.1\|455660_455831_+	hypothetical protein	NA	NA	NA	NA
WP_026029798.1\|456289_457231_+	transcriptional regulator NodD3	NA	NA	NA	NA
WP_003532793.1\|457525_457771_-	protein SyrA	NA	NA	NA	NA
WP_014528569.1\|458819_459137_-	ferredoxin III, nif-specific	NA	NA	NA	NA
WP_013845750.1\|459811_460309_-	nitrogen fixation protein NifX	NA	NA	NA	NA
WP_013845751.1\|460740_462168_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA
WP_013845752.1\|462221_463763_-	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA
WP_017263778.1\|463853_465356_-	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA
WP_003532770.1\|465455_466349_-	nitrogenase iron protein	NA	NA	NA	NA
WP_013845755.1\|468568_469456_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_088202250.1\|469436_470549_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_013845757.1\|470560_471868_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_013845758.1\|471880_472177_+	ferredoxin family protein	NA	NA	NA	NA
WP_017263775.1\|472398_474024_+	nif-specific transcriptional activator NifA	NA	NA	NA	NA
WP_088202251.1\|474240_475713_+	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA
WP_010967429.1\|475744_475939_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_003532756.1\|476126_476333_+	putative nitrogen fixation protein NifT	NA	NA	NA	NA
WP_088202252.1\|478086_480159_-	recombinase family protein	K4JU73	Streptococcus_phage	1.7e-07	21.2
WP_014528559.1\|480145_480325_-	hypothetical protein	NA	NA	NA	NA
WP_153428678.1\|480864_481011_+	hypothetical protein	NA	NA	NA	NA
WP_086019128.1\|481036_482225_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.5e-48	40.8
WP_013845763.1\|483013_484486_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013845764.1\|484567_485647_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-30	39.3
WP_014528554.1\|485643_486444_-	ABC transporter permease	NA	NA	NA	NA
WP_014528553.1\|486445_487321_-	ABC transporter permease	NA	NA	NA	NA
WP_088202253.1\|487413_488424_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003536940.1\|488461_488788_-	NIPSNAP family protein	NA	NA	NA	NA
WP_010967420.1\|488793_490257_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_014528551.1\|490262_491303_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_014528550.1\|491299_492235_-	flavin reductase family protein	NA	NA	NA	NA
WP_014528549.1\|492231_493065_-	alpha/beta fold hydrolase	A0A1D8EVD1	Mycobacterium_phage	2.5e-07	37.4
WP_088202254.1\|493083_493686_-	amino acid synthesis family protein	NA	NA	NA	NA
WP_088202255.1\|494439_495837_-\|transposase	transposase	NA	NA	NA	NA
WP_014528546.1\|497034_497730_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_015242447.1\|498865_500527_-	nodulation protein NoeB	NA	NA	NA	NA
WP_014528544.1\|500533_501964_-	nodulation protein NoeA	NA	NA	NA	NA
WP_003534891.1\|501941_502157_-	hypothetical protein	NA	NA	NA	NA
WP_014528543.1\|502353_502905_-	nodulation acetyltransferase NodL	NA	NA	NA	NA
WP_014528542.1\|504227_505091_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA
WP_014528541.1\|505094_505247_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA
WP_014528540.1\|505258_505990_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA
WP_088202256.1\|506001_507621_-	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA
WP_014528537.1\|508381_509017_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_074853794.1\|509096_509444_-	transcriptional regulator	NA	NA	NA	NA
WP_088202257.1\|510093_510786_-	stachydrine N-demethylase Stc3	NA	NA	NA	NA
WP_026029811.1\|512358_512640_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	8.0e-14	40.9
WP_086017704.1\|513498_513996_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013845291.1\|514405_514663_+	WGR domain-containing protein	NA	NA	NA	NA
WP_014528532.1\|514902_515502_-	hypothetical protein	NA	NA	NA	NA
WP_014528531.1\|515751_516207_-\|transposase	transposase	NA	NA	NA	NA
WP_014528301.1\|516722_517922_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	5.7e-93	47.9
WP_014528529.1\|519397_520285_+	hypothetical protein	NA	NA	NA	NA
WP_088202258.1\|520943_522635_+	type IV secretion system ATPase VirD4	NA	NA	NA	NA
WP_014528527.1\|523002_523728_-	response regulator	W8CYM9	Bacillus_phage	1.1e-17	30.7
WP_011971014.1\|524746_525052_-	hypothetical protein	NA	NA	NA	NA
WP_011971015.1\|525051_526617_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.6

DBSCAN-SWA_2

562112 : 644638

Pseudomonas_phage(16.67%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086019128.1\|562112_563302_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.5e-48	40.8
WP_011971014.1\|563733_564039_-	hypothetical protein	NA	NA	NA	NA
WP_011971015.1\|564038_565604_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.6
WP_011971016.1\|565675_566023_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.0e-26	54.9
WP_011971017.1\|566019_566403_-	IS66 family insertion sequence hypothetical protein	A0A1B0YZU7	Pseudomonas_phage	1.5e-07	40.8
WP_014528497.1\|567400_568126_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_014528496.1\|568976_569426_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	3.3e-17	47.5
WP_127529204.1\|570049_570340_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_088202261.1\|570954_572373_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_014528033.1\|573194_573398_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	8.0e-08	51.7
WP_003535607.1\|574050_574572_+	hypothetical protein	NA	NA	NA	NA
WP_017267611.1\|574629_574839_-	hypothetical protein	A0A291AUN9	Sinorhizobium_phage	3.3e-25	86.2
WP_127529153.1\|574958_575318_-	hypothetical protein	A0A291AUV7	Sinorhizobium_phage	1.7e-13	68.3
WP_088202262.1\|575317_575578_-	chitinase	A0A291AUV5	Sinorhizobium_phage	2.3e-31	80.0
WP_017267555.1\|576320_576542_+	hypothetical protein	NA	NA	NA	NA
WP_094179301.1\|576979_577141_+	hypothetical protein	NA	NA	NA	NA
WP_003535613.1\|577430_577874_+	helix-turn-helix transcriptional regulator	A0A1V0EEW3	Caulobacter_phage	2.7e-08	51.7
WP_015241594.1\|579015_579462_-	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	1.0e-31	54.2
WP_088202263.1\|579431_579722_-	hypothetical protein	NA	NA	NA	NA
WP_017267549.1\|579746_580004_-	hypothetical protein	F1C5D5	Cronobacter_phage	3.9e-15	42.2
WP_003535620.1\|580530_580680_-	hypothetical protein	NA	NA	NA	NA
WP_011970824.1\|580895_581033_+	hypothetical protein	NA	NA	NA	NA
WP_015241591.1\|581399_581666_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_074935191.1\|581995_582127_+	exopeptide	NA	NA	NA	NA
WP_003535637.1\|582326_582578_+	acyl carrier protein	NA	NA	NA	NA
WP_010968824.1\|583750_584047_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	8.4e-22	58.7
WP_088202264.1\|584122_585769_+	chaperonin GroEL	A0A219YK78	uncultured_virus	8.7e-177	63.3
WP_088199099.1\|586755_588165_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-30	37.0
WP_088202266.1\|591799_592057_+	hypothetical protein	NA	NA	NA	NA
WP_003537730.1\|592566_593001_+	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	2.7e-24	47.4
WP_010967235.1\|593313_593721_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_088202267.1\|593720_593975_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_014528484.1\|596627_596957_-	hypothetical protein	NA	NA	NA	NA
WP_088202268.1\|597084_598695_-	tyrosinase family protein	NA	NA	NA	NA
WP_088202269.1\|598758_599151_-	hypothetical protein	NA	NA	NA	NA
WP_086017712.1\|602847_603405_-	NUDIX hydrolase	A0A2H4IB87	Erwinia_phage	4.0e-09	34.5
WP_014528033.1\|603923_604127_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	8.0e-08	51.7
WP_014528489.1\|606917_607163_+	hypothetical protein	NA	NA	NA	NA
WP_088202270.1\|609030_610008_-	hypothetical protein	NA	NA	NA	NA
WP_088202271.1\|611057_611420_+	hypothetical protein	NA	NA	NA	NA
WP_014526646.1\|613334_614594_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.5e-30	30.1
WP_088202272.1\|615767_616871_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_088202567.1\|619005_620535_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.2e-118	43.6
WP_012477343.1\|620547_621285_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-57	47.5
WP_088202568.1\|624129_626094_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	3.5e-79	36.0
WP_088202273.1\|626282_628250_-	acyl CoA:acetate/3-ketoacid CoA transferase	NA	NA	NA	NA
WP_088202274.1\|628257_629364_-	class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC	NA	NA	NA	NA
WP_088202275.1\|629360_629948_-	hypothetical protein	NA	NA	NA	NA
WP_088202276.1\|629954_631130_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_088202569.1\|631180_632062_-	hypothetical protein	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.2e-10	34.9
WP_157718316.1\|632313_632877_-	hypothetical protein	NA	NA	NA	NA
WP_153428688.1\|632984_633449_+	hypothetical protein	NA	NA	NA	NA
WP_088202570.1\|635420_635780_+	Nif11 family protein	NA	NA	NA	NA
WP_088202279.1\|636060_636420_+	Nif11 family protein	NA	NA	NA	NA
WP_088202280.1\|636472_637927_+	radical SAM family RiPP maturation amino acid epimerase	NA	NA	NA	NA
WP_088202281.1\|637923_639870_+	RiPP maturation radical SAM protein 1	NA	NA	NA	NA
WP_088202282.1\|640242_641475_+	hypothetical protein	NA	NA	NA	NA
WP_088202284.1\|642338_642980_+	transglycosylase SLT domain-containing protein	L7TQZ1	Rhizobium_phage	5.5e-26	45.9
WP_088202285.1\|643303_644638_-\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021831

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021831_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021831_1

895527-895644

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021831_1

>merge|NZ_CP021831|1|895527-895644|CRISPRCasFinder
GATCGACCTCGCCGCCGCTACCGCCGACACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGCTGCTTCCGGCGCCGCCGACGCCGCCGCC

>NZ_CP021831|1|1|895527-895644|CRISPRCasFinder
GATCGACCTCGCCGCCGCTACCGCCGA	CACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGC
TGCTTCCGGCGCCGCCGACGCCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021831.1\|WP_010975825.1\|909607_910630_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP021831.1\|WP_014527142.1\|908355_909519_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP021831.1\|WP_014527141.1\|906307_908350_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP021831.1\|WP_010975842.1\|882156_882780_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP021831.1\|WP_088202680.1\|882776_883754_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP021831.1\|WP_010975843.1\|881066_881957_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP021831.1\|WP_080664352.1\|899767_900160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_080599897.1\|889755_890682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_015243022.1\|902784_906123_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NZ_CP021831.1\|WP_088202681.1\|883750_885976_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP021831.1\|WP_088202683.1\|890706_891948_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP021831.1\|WP_044558301.1\|889082_889553_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP021831.1\|WP_010975834.1\|892027_892945_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP021831.1\|WP_080664350.1\|910853_911342_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_027990785.1\|911348_912806_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP021831.1\|WP_080591096.1\|888337_888880_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_088202682.1\|886056_887838_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP021831.1\|WP_010975831.1\|900250_901402_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP021831.1\|WP_014527139.1\|901389_902172_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP021831.1\|WP_010975829.1\|902260_902659_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP021831.1\|WP_010975825.1\|909607_910630_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021831.1\|WP_014527142.1\|908355_909519_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021831.1\|WP_014527141.1\|906307_908350_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021831.1\|WP_010975842.1\|882156_882780_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP021831.1\|WP_088202680.1\|882776_883754_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	2.55217e-90
NZ_CP021831.1\|WP_010975843.1\|881066_881957_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NZ_CP021831.1\|WP_015243022.1\|902784_906123_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NZ_CP021831.1\|WP_088202681.1\|883750_885976_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP021831.1\|WP_088202683.1\|890706_891948_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	3.96972e-67
NZ_CP021831.1\|WP_044558301.1\|889082_889553_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.96877e-16
NZ_CP021831.1\|WP_010975834.1\|892027_892945_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP021831.1\|WP_027990785.1\|911348_912806_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP021831.1\|WP_088202682.1\|886056_887838_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.15081e-170
NZ_CP021831.1\|WP_014527139.1\|901389_902172_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP021831.1\|WP_010975831.1\|900250_901402_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.75634e-171

>NZ_CP021831.1|WP_010975834.1|892027_892945_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP021831.1|WP_088202683.1|890706_891948_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISIDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP021831.1|WP_080599897.1|889755_890682_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPERPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP021831.1|WP_044558301.1|889082_889553_-|GNAT-family-N-acetyltransferase
MLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP021831.1|WP_080591096.1|888337_888880_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVFDDHCRVNQMIKCRRKEQNRLDVP
>NZ_CP021831.1|WP_088202682.1|886056_887838_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCAILLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIASVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFKASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISGEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP021831.1|WP_088202681.1|883750_885976_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARTEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQLDGKLTSIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDTSTPTYMRGPGEASGIHALECAIDELAYKLQMDPLALRRANEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP021831.1|WP_088202680.1|882776_883754_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPETIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP021831.1|WP_010975842.1|882156_882780_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NZ_CP021831.1|WP_010975843.1|881066_881957_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NZ_CP021831.1|WP_080664352.1|899767_900160_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRAQRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP021831.1|WP_010975831.1|900250_901402_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NZ_CP021831.1|WP_014527139.1|901389_902172_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP021831.1|WP_010975829.1|902260_902659_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP021831.1|WP_015243022.1|902784_906123_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP021831.1|WP_014527141.1|906307_908350_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP021831.1|WP_014527142.1|908355_909519_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP021831.1|WP_010975825.1|909607_910630_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP021831.1|WP_080664350.1|910853_911342_-|hypothetical-protein
MPPSSTRACSYLLLWREPLPWGETGFQLCGLPTASLGRGEGQAACRLPPCGGLVGEMAGRPEGVERQTLQCRRRRICREHTLQHSEDAVIRLRHVVLMGEQESRPPLACRPSPPQGGRIPAAGPRSRFCVLPVASFWACEGQTVYRLPQGNGPAGGSDVYMP
>NZ_CP021831.1|WP_027990785.1|911348_912806_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP

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Crispr_ID: NZ_CP021831_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021831_2

895734-895833

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021831_2

>merge|NZ_CP021831|2|895734-895833|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGAAGCCGCCGCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGTCGCCGCCCTGCCCGCCACCGCCGCCGAT

>NZ_CP021831|2|2|895734-895833|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGA	AGCCGCCGCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGT
CGCCGCCCTGCCCGCCACCGCCGCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021831.1\|WP_010975825.1\|909607_910630_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP021831.1\|WP_014527142.1\|908355_909519_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP021831.1\|WP_014527141.1\|906307_908350_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP021831.1\|WP_010975842.1\|882156_882780_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP021831.1\|WP_088202680.1\|882776_883754_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP021831.1\|WP_010975843.1\|881066_881957_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP021831.1\|WP_080664352.1\|899767_900160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_080599897.1\|889755_890682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_015243022.1\|902784_906123_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NZ_CP021831.1\|WP_088202681.1\|883750_885976_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP021831.1\|WP_088202683.1\|890706_891948_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP021831.1\|WP_044558301.1\|889082_889553_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP021831.1\|WP_010975834.1\|892027_892945_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP021831.1\|WP_080664350.1\|910853_911342_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_027990785.1\|911348_912806_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP021831.1\|WP_080591096.1\|888337_888880_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_088202682.1\|886056_887838_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP021831.1\|WP_010975831.1\|900250_901402_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP021831.1\|WP_014527139.1\|901389_902172_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP021831.1\|WP_010975829.1\|902260_902659_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP021831.1\|WP_010975825.1\|909607_910630_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021831.1\|WP_014527142.1\|908355_909519_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021831.1\|WP_014527141.1\|906307_908350_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021831.1\|WP_010975842.1\|882156_882780_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP021831.1\|WP_088202680.1\|882776_883754_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	2.55217e-90
NZ_CP021831.1\|WP_010975843.1\|881066_881957_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NZ_CP021831.1\|WP_015243022.1\|902784_906123_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NZ_CP021831.1\|WP_088202681.1\|883750_885976_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP021831.1\|WP_088202683.1\|890706_891948_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	3.96972e-67
NZ_CP021831.1\|WP_044558301.1\|889082_889553_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.96877e-16
NZ_CP021831.1\|WP_010975834.1\|892027_892945_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP021831.1\|WP_027990785.1\|911348_912806_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP021831.1\|WP_088202682.1\|886056_887838_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.15081e-170
NZ_CP021831.1\|WP_014527139.1\|901389_902172_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP021831.1\|WP_010975831.1\|900250_901402_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.75634e-171

>NZ_CP021831.1|WP_010975834.1|892027_892945_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP021831.1|WP_088202683.1|890706_891948_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISIDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP021831.1|WP_080599897.1|889755_890682_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPERPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP021831.1|WP_044558301.1|889082_889553_-|GNAT-family-N-acetyltransferase
MLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP021831.1|WP_080591096.1|888337_888880_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVFDDHCRVNQMIKCRRKEQNRLDVP
>NZ_CP021831.1|WP_088202682.1|886056_887838_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCAILLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIASVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFKASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISGEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP021831.1|WP_088202681.1|883750_885976_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARTEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQLDGKLTSIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDTSTPTYMRGPGEASGIHALECAIDELAYKLQMDPLALRRANEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP021831.1|WP_088202680.1|882776_883754_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPETIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP021831.1|WP_010975842.1|882156_882780_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NZ_CP021831.1|WP_010975843.1|881066_881957_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NZ_CP021831.1|WP_080664352.1|899767_900160_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRAQRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP021831.1|WP_010975831.1|900250_901402_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NZ_CP021831.1|WP_014527139.1|901389_902172_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP021831.1|WP_010975829.1|902260_902659_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP021831.1|WP_015243022.1|902784_906123_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP021831.1|WP_014527141.1|906307_908350_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP021831.1|WP_014527142.1|908355_909519_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP021831.1|WP_010975825.1|909607_910630_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP021831.1|WP_080664350.1|910853_911342_-|hypothetical-protein
MPPSSTRACSYLLLWREPLPWGETGFQLCGLPTASLGRGEGQAACRLPPCGGLVGEMAGRPEGVERQTLQCRRRRICREHTLQHSEDAVIRLRHVVLMGEQESRPPLACRPSPPQGGRIPAAGPRSRFCVLPVASFWACEGQTVYRLPQGNGPAGGSDVYMP
>NZ_CP021831.1|WP_027990785.1|911348_912806_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP

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Crispr_ID: NZ_CP021831_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021831_3

895908-896027

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021831_3

>merge|NZ_CP021831|3|895908-896027|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCGCACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGGTGCCGCCCGCACCGCCGCCGCCGCCGA

>NZ_CP021831|3|3|895908-896027|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCG	CACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGG
TGCCGCCCGCACCGCCGCCGCCGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021831.1\|WP_010975825.1\|909607_910630_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP021831.1\|WP_014527142.1\|908355_909519_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP021831.1\|WP_014527141.1\|906307_908350_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP021831.1\|WP_010975842.1\|882156_882780_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP021831.1\|WP_088202680.1\|882776_883754_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP021831.1\|WP_010975843.1\|881066_881957_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP021831.1\|WP_080664352.1\|899767_900160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_080599897.1\|889755_890682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_015243022.1\|902784_906123_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NZ_CP021831.1\|WP_088202681.1\|883750_885976_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP021831.1\|WP_088202683.1\|890706_891948_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP021831.1\|WP_044558301.1\|889082_889553_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP021831.1\|WP_010975834.1\|892027_892945_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP021831.1\|WP_080664350.1\|910853_911342_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_027990785.1\|911348_912806_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP021831.1\|WP_080591096.1\|888337_888880_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021831.1\|WP_088202682.1\|886056_887838_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP021831.1\|WP_010975831.1\|900250_901402_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP021831.1\|WP_014527139.1\|901389_902172_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP021831.1\|WP_010975829.1\|902260_902659_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP021831.1\|WP_010975825.1\|909607_910630_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021831.1\|WP_014527142.1\|908355_909519_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021831.1\|WP_014527141.1\|906307_908350_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021831.1\|WP_010975842.1\|882156_882780_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP021831.1\|WP_088202680.1\|882776_883754_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	2.55217e-90
NZ_CP021831.1\|WP_010975843.1\|881066_881957_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NZ_CP021831.1\|WP_015243022.1\|902784_906123_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NZ_CP021831.1\|WP_088202681.1\|883750_885976_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP021831.1\|WP_088202683.1\|890706_891948_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	3.96972e-67
NZ_CP021831.1\|WP_044558301.1\|889082_889553_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.96877e-16
NZ_CP021831.1\|WP_010975834.1\|892027_892945_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP021831.1\|WP_027990785.1\|911348_912806_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP021831.1\|WP_088202682.1\|886056_887838_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.15081e-170
NZ_CP021831.1\|WP_014527139.1\|901389_902172_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP021831.1\|WP_010975831.1\|900250_901402_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.75634e-171

>NZ_CP021831.1|WP_010975834.1|892027_892945_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP021831.1|WP_088202683.1|890706_891948_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISIDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP021831.1|WP_080599897.1|889755_890682_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPERPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP021831.1|WP_044558301.1|889082_889553_-|GNAT-family-N-acetyltransferase
MLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP021831.1|WP_080591096.1|888337_888880_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVFDDHCRVNQMIKCRRKEQNRLDVP
>NZ_CP021831.1|WP_088202682.1|886056_887838_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCAILLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIASVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFKASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISGEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP021831.1|WP_088202681.1|883750_885976_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARTEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQLDGKLTSIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDTSTPTYMRGPGEASGIHALECAIDELAYKLQMDPLALRRANEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP021831.1|WP_088202680.1|882776_883754_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPETIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP021831.1|WP_010975842.1|882156_882780_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NZ_CP021831.1|WP_010975843.1|881066_881957_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NZ_CP021831.1|WP_080664352.1|899767_900160_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRAQRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP021831.1|WP_010975831.1|900250_901402_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NZ_CP021831.1|WP_014527139.1|901389_902172_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP021831.1|WP_010975829.1|902260_902659_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP021831.1|WP_015243022.1|902784_906123_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP021831.1|WP_014527141.1|906307_908350_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP021831.1|WP_014527142.1|908355_909519_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP021831.1|WP_010975825.1|909607_910630_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP021831.1|WP_080664350.1|910853_911342_-|hypothetical-protein
MPPSSTRACSYLLLWREPLPWGETGFQLCGLPTASLGRGEGQAACRLPPCGGLVGEMAGRPEGVERQTLQCRRRRICREHTLQHSEDAVIRLRHVVLMGEQESRPPLACRPSPPQGGRIPAAGPRSRFCVLPVASFWACEGQTVYRLPQGNGPAGGSDVYMP
>NZ_CP021831.1|WP_027990785.1|911348_912806_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085274-1085318	0	1.0
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151496-1151540	0	1.0
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373266-373310	0	1.0
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085279-1085323	0	1.0
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634337-634381	0	1.0
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302265-1302309	0	1.0
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895761-895805	0	1.0
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423128-1423172	0	1.0
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795069-795113	0	1.0
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054100-1054144	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656013-656057	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772894-772938	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292351-292395	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225853-1225897	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998536-998580	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651469-651513	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636463-636507	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233510-233554	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644528-644572	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558514-558558	1	0.978
NZ_CP021831_2	2.1\|895761\|45\|NZ_CP021831\|CRISPRCasFinder	895761-895805	45	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658142-658186	1	0.978
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651262-651324	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085463-1085525	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636256-636318	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151685-1151747	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233303-233365	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644321-644383	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634130-634192	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302058-1302120	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895554-895616	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	773083-773145	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558307-558369	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292540-292602	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1422921-1422983	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373455-373517	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	794862-794924	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	657935-657997	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1226042-1226104	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998725-998787	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085468-1085530	3	0.952
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054289-1054351	4	0.937
NZ_CP021831_1	1.1\|895554\|63\|NZ_CP021831\|CRISPRCasFinder	895554-895616	63	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656199-656261	4	0.937
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651643-651708	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085079-1085144	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1053905-1053970	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636637-636702	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151301-1151366	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233684-233749	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644702-644767	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634511-634576	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	655818-655883	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302439-1302504	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895935-896000	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772699-772764	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558688-558753	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292156-292221	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423302-1423367	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373071-373136	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795243-795308	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658316-658381	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225658-1225723	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998341-998406	6	0.909
NZ_CP021831_3	3.1\|895935\|66\|NZ_CP021831\|CRISPRCasFinder	895935-896000	66	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085084-1085149	6	0.909

1. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

2. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

3. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

4. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

5. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

6. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

7. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

8. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

9. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

10. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

11. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

12. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

13. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

14. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

15. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

16. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

17. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

18. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

19. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

20. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

21. spacer 2.1|895761|45|NZ_CP021831|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

22. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

23. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

24. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

25. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

26. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

27. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

28. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

29. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

30. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

31. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

32. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

33. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

34. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

35. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

36. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

37. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

38. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

39. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

40. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

41. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

42. spacer 1.1|895554|63|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

43. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

44. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

45. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

46. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

47. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

48. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

49. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

50. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

51. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

52. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

53. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

54. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

55. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

56. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

57. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

58. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

59. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

60. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

61. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

62. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

63. spacer 3.1|895935|66|NZ_CP021831|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP021829

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021829_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021829_1

646654-646800

Orphan

Consensus_repeat	Method
TCTCCCCGCATGCGGGGAGAAGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP021829_1

>merge|NZ_CP021829|1|646654-646800|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGGAATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCCTCTCCCCGCATGCGGGGAGAGGGTTAGGGTGAGGGGCGGTCGTCCCCGCGCGCGGGGAGAAGGT

>NZ_CP021829|1|1|646654-646800|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGG	AATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCC
TCTCCCCGCATGCGGGGAGAGGGT	TAGGGTGAGGGGCGGT
CGTCCCCGCGCGCGGGGAGAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021829.1\|WP_014529988.1\|635690_636419_+\|pilus-assembly-protein-CpaD	unknown	unknown	gnl\|CDD\|227748
NZ_CP021829.1\|WP_003531958.1\|650570_651653_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NZ_CP021829.1\|WP_003537743.1\|645386_645731_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP021829.1\|WP_010968384.1\|637858_639259_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP021829.1\|WP_003531955.1\|655172_655553_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|224716
NZ_CP021829.1\|WP_003531957.1\|651833_653693_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP021829.1\|WP_010968383.1\|636441_637728_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227298
NZ_CP021829.1\|WP_003531959.1\|649437_650571_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NZ_CP021829.1\|WP_010968395.1\|658565_659384_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP021829.1\|WP_010968385.1\|639317_640328_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP021829.1\|WP_010968387.1\|642967_643777_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343
NZ_CP021829.1\|WP_010968390.1\|646830_647790_-\|glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240641
NZ_CP021829.1\|WP_010968391.1\|647800_649429_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NZ_CP021829.1\|WP_010968394.1\|656742_658548_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP021829.1\|WP_010968386.1\|640335_641319_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP021829.1\|WP_013844980.1\|655614_656634_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP021829.1\|WP_010968389.1\|645739_646594_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP021829.1\|WP_010968392.1\|653984_655052_+\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|226293
NZ_CP021829.1\|WP_003537933.1\|641547_642711_+\|IS4-like-element-ISRm16-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP021829.1\|WP_010968388.1\|643907_645299_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|223338

Protein	Function_ID	Function_description	E-value
NZ_CP021829.1\|WP_014529988.1\|635690_636419_+\|pilus-assembly-protein-CpaD	gnl\|CDD\|227748	COG5461, COG5461, Type IV pili component [Cell motility and secretion].	3.19225e-111
NZ_CP021829.1\|WP_003531958.1\|650570_651653_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP021829.1\|WP_003537743.1\|645386_645731_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.39809e-11
NZ_CP021829.1\|WP_010968384.1\|637858_639259_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	0
NZ_CP021829.1\|WP_003531955.1\|655172_655553_+\|methylglyoxal-synthase	gnl\|CDD\|224716	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism].	2.60323e-72
NZ_CP021829.1\|WP_003531957.1\|651833_653693_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP021829.1\|WP_010968383.1\|636441_637728_+\|transcriptional-regulator	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	6.1818e-120
NZ_CP021829.1\|WP_003531959.1\|649437_650571_-\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP021829.1\|WP_010968395.1\|658565_659384_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01351e-123
NZ_CP021829.1\|WP_010968385.1\|639317_640328_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.38407e-115
NZ_CP021829.1\|WP_010968387.1\|642967_643777_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	1.63751e-80
NZ_CP021829.1\|WP_010968390.1\|646830_647790_-\|glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240641	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family. This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.07536e-138
NZ_CP021829.1\|WP_010968391.1\|647800_649429_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NZ_CP021829.1\|WP_010968394.1\|656742_658548_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP021829.1\|WP_010968386.1\|640335_641319_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	7.10359e-56
NZ_CP021829.1\|WP_013844980.1\|655614_656634_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.33162e-165
NZ_CP021829.1\|WP_010968389.1\|645739_646594_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21182e-26
NZ_CP021829.1\|WP_010968392.1\|653984_655052_+\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|226293	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane].	5.68793e-158
NZ_CP021829.1\|WP_003537933.1\|641547_642711_+\|IS4-like-element-ISRm16-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.69173e-26
NZ_CP021829.1\|WP_010968388.1\|643907_645299_+\|aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0

>NZ_CP021829.1|WP_010968389.1|645739_646594_+|C40-family-peptidase
MPEVLDRRLNAYREDIAEARLRGLVEAKRFVEGTPAAVSVPVTPLRARPEAGCGTDTELLYGETVRVLDVADGWAWVRSDLDGYVGYVPENVVQPPQAPATHLVAVPRTFVYRGADLRFPQAFALSMGSRIAVVGEAETRGTRYFLLDGGLAIVADHCIPAAGALTEDYVAIAARFLETPYLWGGRSGFGIDCSGLVQLAMQMAGRNAPRDSDMQASGLGRAIEREELTRGDLVFWKGHVAIMEDEKTLLHANGHTMTVAREGLEDAIRRIGWLYAQPTGYRRP
>NZ_CP021829.1|WP_003537743.1|645386_645731_+|winged-helix-turn-helix-transcriptional-regulator
MPVELTPSQALGLWHAVSLEQVRVDSRDLTLRQMAILLQIYLVPPPHTVRGLAASLGVTKPVITRALDTMGALGLVDRIRDERDRRNVIIKRTVEGALYLEKFGDLIINQGRKM
>NZ_CP021829.1|WP_010968388.1|643907_645299_+|aminopeptidase
MAPFQFIERQSPFNTSNGKTLPIFAVTPAHIETGSIDPIALDWAKKAGFKAESGAVLLIPSADGHLGGALFGLGANPSDEPFLTGKLARALPAGKWHIETAPLTANRLALGYGLGSYRFERYKSAKTDAPTLLIPADSDATDIKRQLAGVFLARDLINTPTNDMGPEALEAAFRALAAHYKADVSVISGEALLTENFPLVHTVGRASAEAPRLLEMRWGRKGHRKVTLVGKGVCFDTGGLDIKPAASMLLMKKDMGGAANVMGLALMIMDAKLKVDLRVIVPVVENSISANAFRPGDIYKSRKGLTVQIDNTDAEGRLILADALAYADEEKTDLVVDMATLTGAARVALGPDLPPFFTDDDDLARDLAEASLTVDDPVWRMPLYRGYDKDVSARIADLTNAPSGGMAGSITAALFLKRFVTNAKSWVHFDIFGWAQSERPHSPIGGEAQAIRALYHHIGRIAG
>NZ_CP021829.1|WP_010968387.1|642967_643777_-|tetratricopeptide-repeat-protein
MTMQDNFSFSLRRLATGVAVAMVALSLSACAGQQGRKELTTGSIPKLTRPVQSMNATELAAAAERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIAGQELTSEQAEANVAYLRSVLSQQGAWKQLAKAD
>NZ_CP021829.1|WP_003537933.1|641547_642711_+|IS4-like-element-ISRm16-family-transposase
MRFTPSIFAQLLKAIDRRSFQAIVDRHAGDAYDKCFTSWDHLVALIYAQLSATTSLRGLEASFNANSQHHYHLGSGRLMRSTLSDANRRRPVAVFAETFALLAGQLDRQTRREGTKMLRLIDSTPIPLGKLYDWAKSNGRIRGMKLHVVYDPKADCPGILDITDANVNDAQIGRTITIEKGATYVFDKGYCHYGWWTAIAEAGASFVTRPKTNMGLALVAERPVEQPQGDGFLVLEDSQVSLASKGDSKLPIGLRRVIVKRQDGDTITLLTNDLERSAVEIGQLYKDRWQIELLFRWIKQHLKIRKFLGNNDNAIRLQIFAAMIAYALLRIAARLARVPLPILRFTDLVTQCLFQRKSIAEIHKPPQVNPSRPKPRTIPNQMVFRYA
>NZ_CP021829.1|WP_010968386.1|640335_641319_+|type-II-secretion-system-F-family-protein
MAGWIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIQVADKF
>NZ_CP021829.1|WP_010968385.1|639317_640328_+|type-II-secretion-system-F-family-protein
MFGIDITVLGLAGLVALAAAALAYGVLYPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFDI
>NZ_CP021829.1|WP_010968384.1|637858_639259_+|CpaF-family-protein
MPAVQPVPVERSAAPVLGETVAAPSRPQAAAPPQRRRAPRAEDYYDTKSQVFSALIDTIDLSQLSKLDIESAREEIRDIVNDIITIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDIADIMVNGAGQIFIEVGGKVEESEIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGTALTIRKFKKDKLTLEQLVRFGSITPEAAVLLQIIGRVRCNIVISGGTGSGKTTLLNCLTRYIDSTERIITCEDSAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYTLPARTVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIVGRHVSTGIGRPHFWDRARYFNEDKRLAATLDAMEKQQ
>NZ_CP021829.1|WP_010968383.1|636441_637728_+|transcriptional-regulator
MNAIEYTIDSGGTGDWPADGTRPGDLEQLRPLPRISIHAFCESEAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELAPLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEPLGRSLAFIGAKGGCGSSVIAHNCAWGISNLFSTETILADLDLPYGTANIDFDQDPPQGIAEAVFAPERLDEVFLDRLLTRCSEHLSLLAAPSMLDRAYDFETGAFQPILEILQRSAPVSVLDLPHGWTDWTRSVLSAADEVVITAAPDLASLRNAKNLLDALKKLRPNDKVPHLVLNQVGVPKRPEIAPDEFCASLEIEAAAIIPFDAVLFGNASNSGRMIAEIDRKSPAAETFAQLSHLLTGRTAIKKARRGGLGKVLAKLGRR
>NZ_CP021829.1|WP_014529988.1|635690_636419_+|pilus-assembly-protein-CpaD
MQKRSAARTSLERQPPMALNRLPHRVVLYAIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWRGTDKGDGGTTIVFN
>NZ_CP021829.1|WP_010968390.1|646830_647790_-|glyoxylate/hydroxypyruvate-reductase-A
MPAKSPVIVDLKFIPEEVEAALAGAFPGREVIDLADPAHQERDLSGIDYAVVWKSAPDLFSRAPDLKVVFSGGAGVDHVLTLPGLPDVPLVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESGLPLEHVVDKVAGY
>NZ_CP021829.1|WP_010968391.1|647800_649429_-|ABC-transporter-ATP-binding-protein
MTDTLLSVRDLSVAFHQGGETSLAVDRISFDIKRGETVALVGESGSGKSVSANSILKLLPYPAASHPSGEILFNGKDLLKASDDELRHVRGNDVTMIFQEPMTSLNPLHTIEQQIGEILEIHQDLKGAAARARTLELLEQVGIREAEKRLGAYPHQLSGGQRQRVMIAMALANRPELLIADEPTTALDVTVQAQILELLKSLKDEHGMSMLFITHDLGIVRKIADRVCVMTKGKIVETGPTAEIFANPQHAYTRHLLASEPRGEPPPSDASRPIVIEAKDMKVWFPIKAGFLRRVVDHVKAVDGIDLTLRAGQTLGVVGESGSGKTTLGLALTRLISSKGRIAFVGEDIDAYSFREMRPLRNRMQVVFQDPYGSLSPRMSIADIIGEGLKIHEKALTDGERDQRVAAALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPQFVMLDEPTSALDMSVQAQVVDLLRDLQRKHNLAYLFISHDLRVVRALANEVIVMRLGKVVEQGPAERIFEAPTEDYTKALMAAAFNLEAVNLAAVHQ
>NZ_CP021829.1|WP_003531959.1|649437_650571_-|ABC-transporter-permease
MSTATAYAGAPEKGWLTPIGRRRWQNFKANRRGYWSLWLFLLLFGLSLFAEFIANDKPILASYKGEILVPVLFDYPEEKFGGFLAETDYRSDFIRDEIGANGWMIWPPIRYSYQTVNSSIPHSAPTPPFWLMSEEERCSAYPQGADDPGCIAGNLNWLGTDDQARDVMARMIYGFRISVLFGLALTIASAVIGVSAGAVQGYFGGWTDLLMQRFIEIWSSMPVLYILLIIAAILPPGFFILLGIMLLFSWVGFVGVVRAEFLRARNFEYVNAARALGVGNGTIMYRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQGKSNLQAPWLGLTAFFAMSIMLSLLIFVGEATRDAFDPRKTFR
>NZ_CP021829.1|WP_003531958.1|650570_651653_-|microcin-C-ABC-transporter-permease-YejB
MGAYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVGGGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDLIIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTKNSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYIFSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFERRDV
>NZ_CP021829.1|WP_003531957.1|651833_653693_-|ABC-transporter-substrate-binding-protein
MPNFCRTVKPGLAASLLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKSAEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFDMVKEHNPLFSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKVPAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIADPAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELPYYGMDFPDAWWSKNTAAK
>NZ_CP021829.1|WP_010968392.1|653984_655052_+|penicillin-insensitive-murein-endopeptidase
MKFDARAALRRCGSTVLALIMGVSLVSAEAAANDAPPAKELFGAKDLPMQAAPASFGFYSKGCLAGGVAIPTDGPTWQAMRLSRNRRWGHPAMIALIERFSHDAVEKIGWPGLLLGDISQPRGGPMLSGHASHQIGLDADIWLTPMPQRTLSYQERETISATSMLDKSKFLTVDPSIWTPSHARLIMMAASYPQVERVFVNPAIKKKLCDTWRGDRAALGKVRPIYGHDYHFHIRIKCPPGSKGCKDQAVVPAGDGCDKSLAWWFTDEPWAKPKQKPGAKPPKPKFAKLADLPKACALVLNGPAPASEQEATYGTAYRAPAAIPAAATSIEAVIEAAGEAPLANIPVPSPRPGLQ
>NZ_CP021829.1|WP_003531955.1|655172_655553_+|methylglyoxal-synthase
MADRKCLALIAHDQKKDDLAAFAKANEAVLSKWKIVATGTTGGRVLDVCPALDIVRLKSGPLGGDQQIGALIATGDVDCLIFFVDPLTAMPHDVDVKALMRLAIVYDIPMALNRATAEQLIDFRRN
>NZ_CP021829.1|WP_013844980.1|655614_656634_+|glucokinase
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDKTSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLASLGLEDVLVINDFEAQALAIAAPADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFRIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMRTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR
>NZ_CP021829.1|WP_010968394.1|656742_658548_+|ABC-transporter-ATP-binding-protein
MNAKDRNKRAVDSETITGILKRVIAENGRDHIRGYAFAIACLVVVAATTGFTAWIMEAVVNEAFANRRADIVLLICGAIFAAFVLRGLATYGQAVALSKIGNNIVARYQRRLYAHLMALSVGYFHEHRSAQLAAKVSQNVSGIRDVLNMTVTSIARDLLTLIGLVVVMFSKDWLLSLIVFFVAPPLLLGLRYISRRLRLATREAVEVNSRVLGAMQETIQGITIVKAFTMENELRRKVESIIDRAENRANRIARLSERTAPMTETFAGLAISSVLAYAAFRTIYHNVPPGAFFAFVTALLMAYDPARRLARLQVSMERAAVNARMIYEILDTVPHQRDRPDATELRLGEATVELRDVRFAYGTGEEILKGVSFRAEGGKTTALVGPSGAGKSTIISLIPRFYDPLSGEILIDGQNIAGVTKQSLRAGLAYVSQQPYLFEGSIRDNIRYGRPDATDAEIEEAARLAYAHDFILAQPQGYDTPVGEHGVTLSGGQRQRLSIARALVRNAPVLLLDEATSALDTESEAAVQKALEEAMSGRTVIVIAHRLSTVVNADKIVVMKEGIVVEEGSHEELARRPDGLYARLHNLQGSGADTVAEAQIL
>NZ_CP021829.1|WP_010968395.1|658565_659384_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGVAVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARHARVIKSGNMSLGVNLLGVLTEKAARALPAGGWDIEILEMHHKHKVDAPSGTALLLGEAAARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSATDRSIFARGAVAAALWGRSRKPGFYSMLDVLGLD

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Crispr_ID: NZ_CP021829_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021829_2

1562929-1563039

Orphan

Consensus_repeat	Method
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021829_2

>merge|NZ_CP021829|2|1562929-1563039|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTCCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAAACGGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

>NZ_CP021829|2|2|1562929-1563039|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAAAC
GGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021829.1\|WP_010969001.1\|1565643_1566657_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274313
NZ_CP021829.1\|WP_003527334.1\|1564666_1565554_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP021829.1\|WP_088201963.1\|1568239_1569727_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP021829.1\|WP_010968995.1\|1552712_1555367_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NZ_CP021829.1\|WP_003527322.1\|1570834_1571791_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP021829.1\|WP_003527321.1\|1571819_1573322_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP021829.1\|WP_010968996.1\|1555792_1556731_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP021829.1\|WP_003527345.1\|1558294_1558450_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_010969005.1\|1569719_1570739_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP021829.1\|WP_010969002.1\|1566757_1567159_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP021829.1\|WP_010968994.1\|1550031_1552350_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP021829.1\|WP_010969000.1\|1563447_1564446_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NZ_CP021829.1\|WP_088201962.1\|1559735_1561025_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP021829.1\|WP_003527344.1\|1558487_1558664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_010968992.1\|1545628_1547026_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP021829.1\|WP_010968997.1\|1558802_1559663_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NZ_CP021829.1\|WP_010968993.1\|1547060_1550021_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NZ_CP021829.1\|WP_010969003.1\|1567297_1568224_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP021829.1\|WP_003527320.1\|1573401_1573722_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|224656
NZ_CP021829.1\|WP_003527346.1\|1556740_1558030_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030

Protein	Function_ID	Function_description	E-value
NZ_CP021829.1\|WP_003527320.1\|1573401_1573722_-\|YnfA-family-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	3.23612e-41
NZ_CP021829.1\|WP_088201963.1\|1568239_1569727_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	3.79656e-52
NZ_CP021829.1\|WP_010969000.1\|1563447_1564446_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87733e-106
NZ_CP021829.1\|WP_010968995.1\|1552712_1555367_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NZ_CP021829.1\|WP_003527322.1\|1570834_1571791_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.0146e-08
NZ_CP021829.1\|WP_003527321.1\|1571819_1573322_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP021829.1\|WP_010968996.1\|1555792_1556731_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.33806e-16
NZ_CP021829.1\|WP_010969005.1\|1569719_1570739_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.67535e-71
NZ_CP021829.1\|WP_010969002.1\|1566757_1567159_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	3.33936e-42
NZ_CP021829.1\|WP_010968994.1\|1550031_1552350_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.01082e-54
NZ_CP021829.1\|WP_003527334.1\|1564666_1565554_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	2.97932e-138
NZ_CP021829.1\|WP_088201962.1\|1559735_1561025_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP021829.1\|WP_010969001.1\|1565643_1566657_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|274313	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. [Energy metabolism, Fermentation].	0
NZ_CP021829.1\|WP_010968992.1\|1545628_1547026_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.58696e-52
NZ_CP021829.1\|WP_010968997.1\|1558802_1559663_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.76855e-63
NZ_CP021829.1\|WP_010968993.1\|1547060_1550021_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NZ_CP021829.1\|WP_010969003.1\|1567297_1568224_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.46621e-74
NZ_CP021829.1\|WP_003527346.1\|1556740_1558030_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41852e-81

>NZ_CP021829.1|WP_088201962.1|1559735_1561025_-|Hsp70-family-protein
MASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEAGQAAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWEATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAACYFARNLDRDATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNIVSPLIGKGSLFKSFDKLLEVPSSYYANFGRWNQLSIFKTLRDFTELKKLVRASLEPEKLESFVELIEHDEGYPLYQAVSATKMRLSQAEETEFAFAPLGERARRTVRRDEFEGWIAPDLARIEEALDEVLSTTATTPDGIDKVFLTGGTSFVPAVRRLFENRFGKERIESGGELLSIAHGLALIGERDDIAAWTAAA
>NZ_CP021829.1|WP_010968997.1|1558802_1559663_-|uracil-DNA-glycosylase
MISANDLSRSELAALLAFHAEAGVEWLLEEEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAIPDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNSARNLVFAEGSAASGVMIIGPMPYADDDRDGRPFAGRHGEMLERMLSGIGLSREDVLLANAVPWRPPGNRVPSAREADICRPFIERQIALAEPKQLLLLGNFTARFFFGGETIHQLRGEWRELTFGGTSIPTLATLHPQDLVAAPINKRFAWLDLLAFKSRLG
>NZ_CP021829.1|WP_003527344.1|1558487_1558664_-|hypothetical-protein
MTARYRPIHSSFETLRYAGASSRTPFNSFGSAANEQLTAIGLARTTRPAQIFAEFIQR
>NZ_CP021829.1|WP_003527345.1|1558294_1558450_-|hypothetical-protein
MSKPLDSIRALVDTISDIRTAVRASREYSRLSIASDGRRVHDGAASRLLPS
>NZ_CP021829.1|WP_003527346.1|1556740_1558030_-|MFS-transporter
MLANFASVFSLMLSTFLMMVAFGLQSYVIPVRSVAESWSTLTISIFATGYTLGFTLSCIVTPKFVLRVGHVRVFTALITLLSIAILMCGLVVDWRAWIGFRAVSGFAIAGSYLVIESWLNERVTNENRGLLFSLYLITTMVGTIGGQYLVPLGDPSNTSLFILCGVLFSLALLPTALSSSPMPAPPARANFDIPALYRRSPVAVVGGFLAGALSGAWLNLGGVFTQKIGLSTGEGATLLASLLAGSAISQVPIGRASDRMDRRIVMVACGIAGVVSCLAMSVSIASSPPVLYALAACIGTVLFPIYALNVAHANDLARPDEYVEISSGLMITYGLGTISGPLMVGPVMDRFGPVALFIALAVYFALYSGYAAWRILQREQHDGLVAKTDFQATTVLPTPGPDVTGPLAQQDAGELIEDDTVPAWEQRAE
>NZ_CP021829.1|WP_010968996.1|1555792_1556731_+|DMT-family-transporter
MDADDASPMKGIVLKVLSVVVFVCMSTCIKAAGDDIPTGQITFYRSAFAMVPILGFLACRGALRDAFRTTDITGHLVRGFVGILAMSCGFYGLVHLPLPEAIAIGYAMPLLAVAFAAIFLGEIVRLYRWSAVFVGLAGVFIITWPRLTLFNEGGFGSAEAMGAVAVLLSAALGATAMVLVRKLVQKERTHTIVLYFSLSAAVFSLATLPFGWSELSWQAFVLLTIAGFCGGVGQILLTESYRHADMSTIAPFEYTSIVLGIVIGYFLFGDVPTATMLAGTAIVVGAGIFIIYREHRLGLERKGARKHVTPQG
>NZ_CP021829.1|WP_010968995.1|1552712_1555367_-|aminopeptidase-N
MRTNTGQIVHLENYRPTDFVLERVDLTFELDPRETKVEARMIFHRREGVSPSAPLVLDGDELTMTGLLLDQVAVPGTLYEATDDTLTIRGLPEAAPFEITVTTALSPETNTKLMGLYRTSDVYCTQCEAEGFRRITYFPDRPDVLAVYTVNIIADKASAPLLLSNGNYLGGADMGDGRHFASWFDPHPKPSYLFALVAGDLGVVEDAFTTASGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEEVFGREYDLDIFMIVAVSDFNMGAMENKGLNIFNDKYVLADPETATDADYANIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADMRSRAVKRIAEVRHLKSEQFPEDAGPLAHPVRPTQYREINNFYTTTVYEKGSEVTRMIATILGRDLFKKGMDLYFERHDGQAVTIEDFIACFEAASGRDLKQFSLWYHQAGTPLVTATGTYDAARQTYTLSLEQTVPPTPGQSSKAPMHIPLRFGLLLPDGSEARPSAVSGAEITGDVLHLTERKQTVTFSGIPSEPVPSFNRGFSAPVNLHLTQSAEHRALIARHETDLFARWQALNAMALDNLVKAAAEARTGQPIDCDDALVDALLAAAGDDRLEPAFRSQVMSLPSETDIGREIGSNNDPDAIYAGRQAILAAIATAGKDTFARLVNEMSLSGPFRPDADSAGRRALRNSGLSYLVYADGSPDKAADAFSSANNMTDLSQALTLLAHRFPDARETADALAVFKKRFADNALVIDKWFAIQATIPGASTLDRVRALMSDPLFNASNPNRVRSLVGTFAFANATGFNRIDGEGYRFLARQILDIDTRNPQLAARILTSMRSWRSLEKIRAGHARSALEEIARASNLSADVSDIVDRMLKDEH
>NZ_CP021829.1|WP_010968994.1|1550031_1552350_-|PAS-domain-containing-protein
MADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAFLLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTEFLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKRTRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGLTMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDRG
>NZ_CP021829.1|WP_010968993.1|1547060_1550021_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAEAIERSLSDIDVVAIRPASQADAKAALSVLKDAAKGSDHIAKLIASDAPLKDFLVAAFALSPFLRDTARSHPAILEALLSETLPAFLKRRIEAARVAWRGDAAGAALPDAEIMTRLRRAKREVAFAVALADLSRLFGGRETTGWLSDFAEAAVSAAIDHLLLGAHESGKFVLKDSSAPSTASGVVVLGMGKLGAGELNYSSDIDLVVFYDPQSSIITNRDDAPETFARLLRRLIRILQERTGDGYVFRTDLRLRPDPGSTPLAIPVEAAMLYYESRGQNWERAAFIKARPIAGDLEAGERFLKELTPFVFRKYLDYAAIADIHSIKRQIHAHKGHGEIAVKGHNIKLGRGGIREIEFFVQTQQLIAGGRTPALRLRQTETMLRMLAESGWIDGATAEELIEAYWFLRDVEHRIQMVHDEQTHLLPETEPELRRIAYMLGFEDTASFSNALSRVLRTVERRYAQLFEQEAKLSTETGNLVFTGQQDDPDTLETLKKLGFQRPSDIANIIRTWHYGRYRATQSVEARERLTELTPELLRVFGESRRADEAFLRFDHFLSGLPAGIQLFSLLGNNPGLLSLIVNIMSSAPRLADIIAAKPHVFDGMLEPGLLAELPTRDYLAPRIATFVGGGRHYEEVLDRLRIIAAEQRFLIGIRLLTGAITGLQAGRALTDLADLIIAAALDAVLEEVRSAHGRFPGGRVAIVGMGKLGSHELTAGSDIDLILLYDYDDEVLESDGAKPLDPVRYFTRVTQRLIAALSAPTAEGILYDVDMRLRPSGNKGPVATRITAFAKYQRTEAWTWEHLALTRARCICGDESLVGEAEAIFAEILTEKRDIAKIRKDVEEMRGLIDKEKPPKDIWDFKLIPGGLVDIEFIAQYLALVAPARGVTSPPAGTHTLEALKALGAGMMNANDLDTAAEALVLFTELSQLVRLCIDGDFDPKEAPAGLVDLVCRAGDYPDLTHLEADIRRLSKAVRRIFQGVVAAA
>NZ_CP021829.1|WP_010968992.1|1545628_1547026_+|HAMP-domain-containing-histidine-kinase
MSRISVLFRTTAVRLSALYLVLFSLCAAFLVFYVTGMSERLLQQQTRDSIAAEVTQIADVYDRAGINGLLRSLERRARQPGANLYVIAGPNGEILAGNVAALQPGLLDDEGWKSEPFRYRRFTDESRAERHVALAQVLVLDNGLRILVGRDLQEPEKFRVLVRQALMVALGIMGLGALVIWFGIGRNALRRIDRMSEASTKIMAGDLSQRLPTSGSGDEFDRLSESLNAMLERIEKLNEGLKQVSDNIAHDLKTPLTRLRNKAEAALADTEGSNQSGALEQIIAESDQLIRTFNALLMISRVEAGSAVAEMSEVDLARIVADCVELYEPLAEDKEMRIEAEAAPGVAISGNRELISQALGNLIDNAIKYAEGAENPLIRVEMMRSDRHVVLTVADHGPGIPENMRGEVVKRFVRLDESRSKPGTGLGLSLVDAVMEMHRGSLELSATEEDGRGLAVRMVFPAVAT
>NZ_CP021829.1|WP_010969000.1|1563447_1564446_+|ABC-transporter-substrate-binding-protein
MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAELVVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVPKYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAGFTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCNTVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQASGEEGAKHFLEENPDLWTKWVSPEVAEKIKAAL
>NZ_CP021829.1|WP_003527334.1|1564666_1565554_+|proline/glycine-betaine-ABC-transporter-permease
MEWLTKFPHMDDDRLRQLKKIIDEGFRSFTRAYGDAIESFFDPLQFFLIHAERFMTRTPWPIILILIAVIAWFASRNWKIVAGAIGTLLLIGYLDMWDDTMKTISMIFVCTVLSIAIGIPMGIIMSRSDRFQNIVNPVLDVMQTMPSFVYLIPVVMLLGIGKVPGLIAVVIYAIPPMIRLTNLGIRLVDKDVLEAADAFGSSNWQKLKNVQMPLALPTIMAGINQTIMMALAMVVIASMIGVQGLGQPVLKAIANQYFTLGIFNGLAIVGIAIIFDRVSQAYGRRLQRHREIIHG
>NZ_CP021829.1|WP_010969001.1|1565643_1566657_-|zinc-binding-alcohol-dehydrogenase-family-protein
MRAVAYKTPQPIANETALIDVDLPVPTPGERDLLVEVRAVSVNPVDTKVRAGVQPEPEQLKVLGWDAAGVVKAVGPKVTLFKPGDEVFYAGAIDRPGTNAELHLVDERIVGRKPQSLDFAAASALPLTAITAWETIFDRLRVNDPVPGAANAVLIIGGAGGVGSIAIQLLRALTNVTVIATASRAETREWALKLGAHHVLDHSRPLAAEIEQLALGAPAFVFSTTNTDKHVDEIVKLIAPQGRFALIDDLAVLDVTPFKRKSVSIHWEMMFARPLFGTPDMIEQHNLLNRVAELVDGGKIRTTLTETLGPIDAATLRKAHQMIETGRTRGKLVLAGF
>NZ_CP021829.1|WP_010969002.1|1566757_1567159_+|helix-turn-helix-transcriptional-regulator
MSRPRAKLTNTFPGCPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSVTPRMLTRQLRELEEAALLSRTVFPVVPPRVDYALTARGESLKPVIMALKAWGDENVLCDGDSMTLKPLESRSRPELKGA
>NZ_CP021829.1|WP_010969003.1|1567297_1568224_+|diacylglycerol-kinase-family-lipid-kinase
MKVKAIFNRDGGTFRTTDMDAYSRKVEEDFRAAGHEIEIAVVGADEMRDTLETACGRGDLDAIVAGGGDGTISAAAGVAWKTGMPLGIVPAGTMNLVARSLKLPLDIWKVPEVLANGRIIDADIGSADGRAFVHQFSMGLHARMVRYRQSYRFASRLGKISASTRAAIGVIFNPPDFEIEFDADGHRERRHVSAISVSNNHFGHDTLMYAEDLTSGHLGFYTAPPLSPAGVAKLSFDILRGKFRSSTLITEMSALTVDLHFPKMDRKINCVIDGELVPIRSGRVALRVHPGELKLLVGSQESNAGKTV
>NZ_CP021829.1|WP_088201963.1|1568239_1569727_-|glycosyltransferase-family-39-protein
MLEAVNRRPGAAVLAVAGYFLLCIILRVSVSSSLEIDEAEQAFLSQFLALGYGPQPPFYNWLQYGLAELIGPSLATMTILKNGLLFLCCLFYGLAARLVLADRRLPPIAMLGVLTLPPVFLLAQRDLSHTVAALFAVSLFLYGFLRTLKRPSLFSYLLTGVAVGIGLMAKYNFVLVPVAAIVAVLPERELRARILDWRILPAIAIATLIVLPHAYWMLQNFGFASGGTLNEMREREAEGLLLQAFYGVYSLGSAIIGGSLGPLLVFGLVFRGKLRAIWQAESQWSRIIGRMLALCLIAVLLVVLGVAATHVREKWLVLFLVLIPLYLCLKIEAANIDLTDSLRRFFLLVCVIALGALVMVSARAVVRPWFGDYSRLNIPYAAFAEAVAQAEGGQPALILANDKQIAGNLRTQFSRAQVTMPRPSNALPVDMSRRPLLLVWHDDAQPEAPVPDLLRNALSELGVPGAAAAPRHLALPYLYGTGSDRYGFSYIWVAE
>NZ_CP021829.1|WP_010969005.1|1569719_1570739_-|glycosyltransferase-family-2-protein
MNRIEEPVKPMTEVLEGVELSIVVPVFNEEESVGPLVTRIRAAMAGFLKSWELILVDDGSTDRTLPNARKELSNPDLQLKIIELQKNFGQTAAMQAGIDAASGRLIATLDGDLQNDPADIPNMVAAIEERGLDLLVGWRQNRRDALILRKIPSWCANVLIGKITGVRLHDYGCSLKIYRGSIIKQVKLMGEMHRFIPAWVAGVVPSSRIGEMPVTHHARHYGTSKYGISRTFRVILDLLAVLFFMRYKARPGHFFGSIGLAAGGLSVLILLYLAIDKFILGNDIGTRPMLIVGVMLFLSSIQLITTGILSEMMARAYFRDDEVTSYIVRQTFEREQPHA
>NZ_CP021829.1|WP_003527322.1|1570834_1571791_+|flippase-like-domain-containing-protein
MNTNWERSRRSWLARNRLALISAAAIAAYAIFVEWVWGWPVLLRQWAEIGVGPVLSALALLVATYFIRCYRIHDYFPGETRGRFLSLFRVTQVHNLLNIMLPFRAGETSFPLLMRSEFGVPLVRGTAALFVMRLLDLHALLTVAAVGLVAGRGQGAIGWVLWLIAFLSPLAFFLMKEKALTVMRRVAPAKAGPLLDEAEAGLPIGIPAFLRAWAMTMLNWAVKVVVLAWVLAIMGVAPLAASFGGALGGELSSVLPVHAPAGVGTYAAAIVAGAVSFGASADQATLETLGRASVNAHLMVIVSAVAGTMLSLLLRPKA
>NZ_CP021829.1|WP_003527321.1|1571819_1573322_-|AMP-nucleosidase
MNKRISSNSVLSVATPEPFEPQLFDDPTEAVDCLEALYERNTRFLCEGFEGLGKSGRPLTRFRACYPQVSIETSSFGHVDSRLSFGYVSAPGVYTTTITRPKLFRHYLKEQLGHLMRNHGVGVTVSESSTPIPLHFAFGEGAHVEASAAESIDIPLRDLFDAPDLTTTDDEIANGSYEPGPGEPSPLAPFTAQRIDYSLARLSHYTATSARHFQNFVLFTNYQFYVDEFCAWARQQMAEGGNGYTAFIEPGNITTPAGADRPDADYSLARLPQMPAYHLKKKGHGGITLVNIGVGPSNAKTITDHIAVLRPHVWLMLGHCAGLRNSQRLGDYVLAHAYMREDHVLDDDLPVWIPLPALAEVQVALQDAVAEVTGYKGYDLKQIMRTGTVATIDNRNWELRDQRGPVKRLSQARAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRTQVSQHLKIGILALQKLAAMPPEKLHSRKLRSFYETSFQ
>NZ_CP021829.1|WP_003527320.1|1573401_1573722_-|YnfA-family-protein
MPAYAIYFLAALAEITGCFAFWSWLRLGKSALWLIPGMASLALFAWLLTMVDAAAAGRTYAAYGGVYIVASLSWLWLAEGVRPDHWDMTGAAVALAGSAIILAGPR

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Crispr_ID: NZ_CP021829_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021829_3

2260297-2260380

Orphan

Consensus_repeat	Method
GGGTGTCACCGTGACACCCCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021829_3

>merge|NZ_CP021829|3|2260297-2260380|CRISPRCasFinder
GGGTGTCACCGTGACACCCCTCGGCGTCGTCGGTGTCACCCGTCCCTGTCGCCGCTGTCACGGGTGTCACCGTGTCACGGGTGA

>NZ_CP021829|3|3|2260297-2260380|CRISPRCasFinder
GGGTGTCACCGTGACACCCCTCG	GCGTCGTCGGTGTCACCCGTCCCTGTCGCCGCTGTCAC
GGGTGTCACCGTGTCACGGGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021829.1\|WP_088202063.1\|2251589_2251979_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_088202075.1\|2262482_2264000_-\|S-adenosylmethionine-binding-protein	unknown	unknown	gnl\|CDD\|227069
NZ_CP021829.1\|WP_088202066.1\|2254396_2255674_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|227039
NZ_CP021829.1\|WP_088202065.1\|2253466_2254324_-\|Clp-protease-ClpP	unknown	unknown	gnl\|CDD\|132927
NZ_CP021829.1\|WP_088202062.1\|2250541_2251129_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274035
NZ_CP021829.1\|WP_088202070.1\|2258258_2258621_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NZ_CP021829.1\|WP_088202067.1\|2255687_2257394_-\|terminase-large-subunit	unknown	unknown	gnl\|CDD\|226974
NZ_CP021829.1\|WP_088202071.1\|2258826_2259486_-\|antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|193574
NZ_CP021829.1\|WP_088202076.1\|2264145_2264394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_088202080.1\|2266852_2267026_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_088202077.1\|2264614_2265067_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_088202073.1\|2260863_2262168_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_088202078.1\|2265286_2265538_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_088202064.1\|2252052_2253456_-\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|227000
NZ_CP021829.1\|WP_088202069.1\|2257955_2258213_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_024311587.1\|2264393_2264615_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_088202207.1\|2265626_2266328_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|119397
NZ_CP021829.1\|WP_088202068.1\|2257377_2257869_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_088202079.1\|2266549_2266732_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_088202074.1\|2262176_2262482_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP021829.1\|WP_088202075.1\|2262482_2264000_-\|S-adenosylmethionine-binding-protein	gnl\|CDD\|227069	COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription].	4.73582e-23
NZ_CP021829.1\|WP_088202066.1\|2254396_2255674_-\|phage-portal-protein	gnl\|CDD\|227039	COG4695, COG4695, Phage-related protein [Function unknown].	1.24688e-102
NZ_CP021829.1\|WP_088202065.1\|2253466_2254324_-\|Clp-protease-ClpP	gnl\|CDD\|132927	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	4.97479e-70
NZ_CP021829.1\|WP_088202062.1\|2250541_2251129_-\|hypothetical-protein	gnl\|CDD\|274035	TIGR02215, conserved_hypothetical_protein, phage conserved hypothetical protein, phiE125 gp8 family. This model describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. Members of this family show some similarity to members of pfam05135, a putative DNA packaging protein family. [Mobile and extrachromosomal element functions, Prophage functions].	1.7332e-25
NZ_CP021829.1\|WP_088202070.1\|2258258_2258621_-\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	2.58697e-05
NZ_CP021829.1\|WP_088202067.1\|2255687_2257394_-\|terminase-large-subunit	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	9.2628e-94
NZ_CP021829.1\|WP_088202071.1\|2258826_2259486_-\|antitermination-protein-NusG	gnl\|CDD\|193574	cd08000, NGN, N-Utilization Substance G (NusG) N-terminal (NGN) domain Superfamily. The N-Utilization Substance G (NusG) and its eukaryotic homolog Spt5 are involved in transcription elongation and termination. NusG contains an NGN domain at its N-terminus and Kyrpides Ouzounis and Woese (KOW) repeats at its C-terminus in bacteria and archaea. The eukaryotic ortholog, Spt5, is a large protein composed of an acidic N-terminus, an NGN domain, and multiple KOW motifs at its C-terminus. Spt5 forms a Spt4-Spt5 complex that is an essential RNA Polymerase II elongation factor. NusG was originally discovered as an N-dependent antitermination enhancing activity in Escherichia coli and has a variety of functions, such as being involved in RNA polymerase elongation and Rho-termination in bacteria. Orthologs of the NusG gene exist in all bacteria, but its functions and requirements are different. The diverse activities suggest that, after diverging from a common ancestor, NusG proteins became specialized in different bacteria.	4.49842e-23
NZ_CP021829.1\|WP_088202207.1\|2265626_2266328_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	7.34354e-13
NZ_CP021829.1\|WP_088202064.1\|2252052_2253456_-\|phage-major-capsid-protein	gnl\|CDD\|227000	COG4653, COG4653, Predicted phage phi-C31 gp36 major capsid-like protein [General function prediction only].	3.79482e-137

>NZ_CP021829.1|WP_088202071.1|2258826_2259486_-|antitermination-protein-NusG
MIMQRSTFTGSPIALRGHDRFADRMRRITDGLLDEGALVTTNCRINGGKAPWFALRVWTGREKDVEKTLDAMGIRSLVPMRKGPDHRRRGRVIEGAMMPVIHGYVLVQMIASAEYLAGLLGVEHAIDVLGGCERPMRVSDAEVSRFNTLARGGTYDWERPVDLSLRAGEAVWISAGPFCDRKAKVVTPNRNGRGDVVVSISIMGGEVPVTVPLALLKKL
>NZ_CP021829.1|WP_088202070.1|2258258_2258621_-|HNH-endonuclease
MGRLSTIKPRLATLAPKIGRAPGDEKARLRERDQQVGWRSWYKTARWQKLRMSVLIRDRFTCQMIGCGRIEPNTSLLVADHKLQHHGDEALFWDENNLQCLCKTCHDKLKQKQERAQARW
>NZ_CP021829.1|WP_088202069.1|2257955_2258213_-|hypothetical-protein
MSVRNVRAKFFVSEVRHVGTPATDPFAVVTLLPVFSTYGDGKANESWSKHTPSGKIEMNITNPNAIDAFDVGKAYFVDFTPVEGA
>NZ_CP021829.1|WP_088202068.1|2257377_2257869_-|hypothetical-protein
MTENFDLFGNPYVERPTKRGRPPHEVTKKTRNRVSMLVALGWANPRIASALGVTLPTLHKHYFYELRQRDVARDRLELRRLELAWEMAEAGNVGAFKEFGKMLERNDRMEIEREMGARPKEDGKSAAAERVGKKVIDKQRAVDADADLMAELEREASHNVGHC
>NZ_CP021829.1|WP_088202067.1|2255687_2257394_-|terminase-large-subunit
MLDTADLPRFACPDWWDRIQAGQTPMADVPLNQEKAAKAVAFFNRLRLPDVPGNPPLSEACGEWFRDILCAFLASEDPETARRLVWELLCMVPKKNSKTTYVAALGLTALYMEEAPNRQMLIVAPSQNISERCFEQAQGMIRIDQRLDAIFKVQDHVKCITRNKTGTQLNVKTFDTSIVTGEIPILTIIDELHELGKKAKAAAVMQQIRGGGITKQRGQVLMITTQSDEPPAGIWRTELDKARKIRDGKGGASPIMLPVLYEYPVEKQLDQDYWRNPKNWDLILPNMGLSIDRQAIVDDYENNGKVNKEAEQIWASQHLNIEIGVGLGGDGWSGALHWMSCVDSTLADLDALLERSEVCTIGIDWGGADDLAALYVIGREAMTKRWLGWGTAWARKTVFEQRKGIAQRLHKFAEDGDLIICASGEDQAASAAAICRRVADSGLLPETAGIGLDSAGVALLIDALEAEELEQPLVQAVTQGWKLQTAISSVPLKLEDRRFLHGDQDIMAWCVGNAKQTLKGSNYVVTKEVSGAAKIDMLMALFNAAMLMFLNPEAKGLSVYRDRGLLVM
>NZ_CP021829.1|WP_088202066.1|2254396_2255674_-|phage-portal-protein
MAFWSKLFGGASAPAAQPQAAYQDKGGGVIISTPQELEAAMRGGSMTGSGVSITPDRAMRVAAVFACVRIRSGVVANMPLHIKRRVDERTREDASDNPLWKIFRRRPNRWQTPAQFKRMMQAHLLLRGKAYAMIVWSRGSVLELIPMHPDRVECKQNDDLSLSYVYTRKDGRKIKLSQRDVFHLVGLTLDGVNGVSVITYARETIGFSVSMENHGASVFKNGARASVVLKHPTTLGKEGLEFLRASLDEYRAGGESEGKALILEEGMSTEQLSMTSEDAQWIESRKFSRTDIAMFFGVPPHMIGDTEKSSSWGTGIEVQTQGFVTFSAEDDLTIWEETINRDLIPEESDLYAKFNRGALVRGDIKARWDAHVKALQWGVASPNEIRALEDMNPREGGDVYYPPPNTAGGKDDGGGDEPVKNSEDR
>NZ_CP021829.1|WP_088202065.1|2253466_2254324_-|Clp-protease-ClpP
MSLRQLPEAKTFQRPQNFQWDAPSDVLAKWAEVPMAAADDSENTITMFEVIGEDWWTGGGVTAKRVSAALRSIGNKDVKVKVNSPGGDMFEGIAIYNLLRSHPAKVTVEVLGWAASAASIIAMAGDEIRMGLGTFMMVHNAWGVVVGNRHDMREAASLFDGFDSAIADIYEARTGMKRKDIEKLMDAETFMGPSEAVEKGFADAVDNGIEVPSAGAAKNMDRGLMARRQTEAALARAGFSRDKRSELLSELGAAAAPRDASRKPAARDAGIDLAAVRQLIETIRT
>NZ_CP021829.1|WP_088202064.1|2252052_2253456_-|phage-major-capsid-protein
MKFGTLVAAFSVAAIACAVIAFAAVGAVDLHAWIPGSDSVGTSLAMTIMPAFNQRARGHVGVRADGTNAAAILAELKQTFEAFKTEREAELKGINAKFADVVQTEKVDRINAEVTKLQKALDDVNATMAAIRIGGAGGDVDPDVAEHAQAFNRWFRKGVDAGLSDLEVKAKLTTQSDPDGGYLVPEEMESTIDRIVGTVSAVRSMSRVIQISTDTYKKLVNMGGATSGWVGEEQARTDTNTPTLRELAVNTGEIYAQPAATQKMLDDGRIDIAAWLGDEVSIEFAEKEGAAFVSGNGVNKPRGILAYDTVANASYEWGKLGYVKTGAAAAFAGTDPADALISLYYALKQQYRNGASWLLSDAVMETVRKFKDGQGNYLWAPPSGPAMVSTILGKPVATDDNMPALGANAFPVAFGNFTRGYLIVDRTGIRVLRDPYTSKPNVLFYTTKRVGGGVVNFEALKLLKCEA
>NZ_CP021829.1|WP_088202063.1|2251589_2251979_-|hypothetical-protein
MKDTYSALNFAHTLEPAARTASANGAGVDLRGYNSALVQVVAGVWTDGTHTPKLQESDDDSTYTDVAAADLLGSFTVIDGADDDAQTFKVGYKGNKRYIRGATTVAGATTGAVYGMIVIRSHANDAPVA
>NZ_CP021829.1|WP_088202062.1|2250541_2251129_-|hypothetical-protein
MLRPIRISAPDAKPVSLVEAKGAAKVDFDDDNALIEGMIDAAISRLDGWSGVLGRCLINQEWRLSLCDWPTCRFIRLPFPDVSAATVKYFDEDNAEQTVSASLVTRLEDERGTIIRFSDDFAFPSVFDDRGDGVQVEFTAGYGENAADVPHAIRTAILLIVAHWYNNREASTEGQQSEIPFGASALIAPFRRVGV
>NZ_CP021829.1|WP_088202073.1|2260863_2262168_+|hypothetical-protein
MDYRIYELVSSPFDGTGKRAYRGGETGDLYPLYERVFAFGQELAATILPNDNLQKLYLDLKLSVEKATLESLQPNGPWPTLPVLYEGTVHLFLQRAEALQKSSSQEELRQLCIALFCALLVEFSAVEVTGVNLDTSALATSLHAEVASYVSWRTFSQLKSDVDLGISNLTSGAEEKFNSVIGSAQDQIQKMIERDTALQQQDSLLRARIQEILGGVQSEAKQLEDQAAAAHATFSKVLEQSKENEDRIALSQESIKRHADAIREELRIDSTRKLWQRRANEGTFAFWISALAIAGFLVGPIAYSFSHLEDLISTLRLIGDAATTGIDTGESAGAAQLTANAVARLAVITVPLAVYFWGVKLLVRYNARSMMLMDDARQRQTMMEVYTHLIEHNGATSEERALVLNALFRPAPGHGPENVEPPNFTELLSKASAK
>NZ_CP021829.1|WP_088202074.1|2262176_2262482_-|hypothetical-protein
MTSMLPIIEELADAADNSARARWLLEVPLAVIIRDPVTIHRLLSAAGFHEGLAYFAAEIAALSATRGRDGLAPNTIRMTREYARIGIQVIARGALEGKVCA
>NZ_CP021829.1|WP_088202075.1|2262482_2264000_-|S-adenosylmethionine-binding-protein
MSDQLPKLGPRAREIVDAVLREGIYRASKESEIAICRNLNSRQLLSRDKRDGAVWYPTAKLCELAGVTPPEIGQGGEGGPGAPDSRVQPEEGADRLPAPAEIEPSPTAELPPLTRLPHHPLAALFPMLPDDELRRLADDIEANGQQEPVWLFGGKILDGRNREAACHLVGIDAWTKEYEGKDPLGFVLSLNLHRRHLTESQRAMVAARIVDWERGINQNTAGDANLHAREAGRRLSISERAVKAAKRVRDHGVEALSDAIRDGRISVHAGEALSHLGRAAQEEALQLEEKEIIKRAKEIRQKRQEIRHAVRLTHMAHVAEAGTSTAGKVRQKFPVIYADPPWQFGVRSEVTGREKSAENHYPTMPTDAICALFDEIGAPAKADAVLFLWATNPMLPDAFRVMAAWGFTYVHHWIWDKEVAGTGYWGRDRHELLLIGRRGDPVSPLPGSQPETVYRERKGRHSAKPDYFAEQIERLYPAMPRLEMFCRSPRSGWTAWGFEAATGGN
>NZ_CP021829.1|WP_088202076.1|2264145_2264394_-|hypothetical-protein
MDRATRSPACWTASGPVGPRCIALLRRVRASGDTYTLVRNVDRDAVVKALAGGFVAWVGHSRDVVRLTARGAEYLDRLARVE
>NZ_CP021829.1|WP_024311587.1|2264393_2264615_-|hypothetical-protein
MDGGPENPTKTVTAICALLPDDPEAAVSVVTVACAAAAITAGLDDESTVDGLRAALESMRGNGLGDIGRKGVH
>NZ_CP021829.1|WP_088202077.1|2264614_2265067_-|hypothetical-protein
MRAISDEHASVIKAATAAAYEALGGVNRAAESLGVASSTLTKYASTGEEWRDSFIRLDLAAELDRRCDHPFLLTAMSRIVKDERVSSFGAVTASAVLRLDGVLDDVVRTVAQAIEDGRIDAAERQAIRSRIVAAKQDLARLEAMMMDGAA
>NZ_CP021829.1|WP_088202078.1|2265286_2265538_-|hypothetical-protein
MTLREQLILVSDEFGRARGIGRQRVSTIVLNRGSTLDLLAQGRSDLNTGTFERAMIWFSENWPEGAEWPGGVPRPVLQTEAAE
>NZ_CP021829.1|WP_088202207.1|2265626_2266328_+|LexA-family-transcriptional-regulator
MTETIHDRIKERLRIMDLSPQAASMKAGLSKDTLRKLLANRDQLPTGKTLSALAPALEVSEQWLLTGQDSGPSQPAQPHQEVRVANIELPTNSAMPKDVPVLGTAAGSHHRGAFQLTSDAIDYVRRPPALMGTKDIYSLYVEGSSMEPQYWQGDLVYVHPHKPARSGDAVVVQCRIGEEEIEGTVEATIGLYVRRTGEALIIRKHNPPAEIEIKNEAIISYHKVLTMNELFGI
>NZ_CP021829.1|WP_088202079.1|2266549_2266732_+|hypothetical-protein
MQPNGGIHTRNTIKSMAEAMRSVGDGCTKDDLLLKGFTERQINIFGPKATELATVMAQAA
>NZ_CP021829.1|WP_088202080.1|2266852_2267026_+|hypothetical-protein
MTEHFIGHNKARLEASPNRFFLACAILALSIAFLMSAALAGTTAFRKEWQFASDANV

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Crispr_ID: NZ_CP021829_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021829_4

2526076-2526188

Orphan

Consensus_repeat	Method
CCCTCATTCCTGTGCTTGTCACAGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021829_4

>merge|NZ_CP021829|4|2526076-2526188|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAATGAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCTCCCTCATTCCTGTGCTCGTCACAGGAAT

>NZ_CP021829|4|4|2526076-2526188|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAAT	GAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCT
CCCTCATTCCTGTGCTCGTCACAGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021829.1\|WP_013844508.1\|2520216_2521239_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NZ_CP021829.1\|WP_003534093.1\|2524030_2525950_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP021829.1\|WP_010969519.1\|2531936_2533328_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|213618
NZ_CP021829.1\|WP_010969508.1\|2516751_2517435_-\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NZ_CP021829.1\|WP_013844510.1\|2527000_2528734_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NZ_CP021829.1\|WP_010969509.1\|2517732_2518554_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180462
NZ_CP021829.1\|WP_003534106.1\|2514788_2515433_+\|autoinducer-synthase	unknown	unknown	gnl\|CDD\|226430
NZ_CP021829.1\|WP_003535076.1\|2534186_2534882_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_CP021829.1\|WP_010969517.1\|2528875_2529778_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021829.1\|WP_010969507.1\|2515600_2516728_+\|DUF2865-domain-containing-protein	unknown	unknown	gnl\|CDD\|371363
NZ_CP021829.1\|WP_010969510.1\|2518925_2520119_-\|phytanoyl-CoA-dioxygenase	unknown	unknown	gnl\|CDD\|227609
NZ_CP021829.1\|WP_003535070.1\|2530330_2531704_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662
NZ_CP021829.1\|WP_003534108.1\|2513894_2514632_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NZ_CP021829.1\|WP_010969521.1\|2535817_2537713_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225536
NZ_CP021829.1\|WP_010969518.1\|2529799_2530195_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP021829.1\|WP_003535074.1\|2533532_2534075_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NZ_CP021829.1\|WP_010969513.1\|2522079_2523762_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP021829.1\|WP_010969520.1\|2535101_2535785_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP021829.1\|WP_010969515.1\|2526576_2526999_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP021829.1\|WP_010969512.1\|2521249_2522077_-\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893

Protein	Function_ID	Function_description	E-value
NZ_CP021829.1\|WP_013844508.1\|2520216_2521239_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	1.08222e-88
NZ_CP021829.1\|WP_003534093.1\|2524030_2525950_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.21123e-140
NZ_CP021829.1\|WP_010969519.1\|2531936_2533328_-\|glutathione-disulfide-reductase	gnl\|CDD\|213618	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. [Energy metabolism, Electron transport].	0
NZ_CP021829.1\|WP_010969508.1\|2516751_2517435_-\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	4.8092e-111
NZ_CP021829.1\|WP_013844510.1\|2527000_2528734_+\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	0
NZ_CP021829.1\|WP_010969509.1\|2517732_2518554_-\|SDR-family-oxidoreductase	gnl\|CDD\|180462	PRK06198, PRK06198, short chain dehydrogenase; Provisional.	7.66456e-165
NZ_CP021829.1\|WP_003534106.1\|2514788_2515433_+\|autoinducer-synthase	gnl\|CDD\|226430	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.55042e-97
NZ_CP021829.1\|WP_003535076.1\|2534186_2534882_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.21528e-117
NZ_CP021829.1\|WP_010969507.1\|2515600_2516728_+\|DUF2865-domain-containing-protein	gnl\|CDD\|371363	pfam11064, DUF2865, Protein of unknown function (DUF2865). This bacterial family of proteins has no known function.	1.36883e-30
NZ_CP021829.1\|WP_010969510.1\|2518925_2520119_-\|phytanoyl-CoA-dioxygenase	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	4.07293e-103
NZ_CP021829.1\|WP_003535070.1\|2530330_2531704_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NZ_CP021829.1\|WP_003534108.1\|2513894_2514632_+\|transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	3.50703e-21
NZ_CP021829.1\|WP_010969521.1\|2535817_2537713_-\|murein-L,D-transpeptidase	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP021829.1\|WP_010969518.1\|2529799_2530195_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.93053e-44
NZ_CP021829.1\|WP_003535074.1\|2533532_2534075_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	3.19008e-64
NZ_CP021829.1\|WP_010969513.1\|2522079_2523762_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP021829.1\|WP_010969520.1\|2535101_2535785_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.43772e-103
NZ_CP021829.1\|WP_010969515.1\|2526576_2526999_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	2.76293e-23
NZ_CP021829.1\|WP_010969512.1\|2521249_2522077_-\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	1.73907e-62

>NZ_CP021829.1|WP_003534093.1|2524030_2525950_+|LTA-synthase-family-protein
MARIDSAVSSSQVYADGESSSARYTRTLSGARSALFTLLIAIALVFTVEVIVRWSWPDTVAYFADPMRPAWTTVAVFFLAMLGVDALFGREHKAALLIAPLAVVPAFISQQKQVFLSDPLYPTDFLFGRQIMELMPVLVKDRPWTAVGVVAGLIAAIVVGALLLRFAWQNFPKLTRRERLMRIAFALPLLVAFWNIMDYNQFSWIRDRLRVIPIMWDQTENYRHNGFALAFAINLPMANVNAPAGYMADAIDRIPVKPLPAGTTHRGKPDVIVLMSESFWDPTRLPKVKLTPDPMPTIRELQGGNVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRNPIPSLATFFRGEGYVSRAIHPFQGWFWNRTAVYKAFGFDMFRSEENMPAMQKRGIFASDESLTKEIIRQADEVEDPFFFFAVTLQGHGPYEANRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDSLKMLMDWAKERDRETIIVLFGDHLPPLNTVYSSTGYMKGITAERKGPKDQMKAEHETPLVVWSNKTGPKKNIGTISPAFLSYQILKQAGYEHPYYTGFLGKVYDHYRVLDRYMLIRKNGKDVADWLRQPKVPASLRDYRFLQHDMMFGKRYSTERFFKSHAELYSAGL
>NZ_CP021829.1|WP_010969513.1|2522079_2523762_-|NAD+-synthase
MTAQKAAPSTLRIAVAQLNPTVGDIAGNVAKAREARTAAAREGADLLLLTELFISGYPPEDLVLKPAFLKACEQAVEKLAAETADGGPGVVIGFPRQAAGLRHNSVAVLDGGRVIAIRDKVDLPNYGEFDEKRVFDAGEMPGPVNFRGVRIGIPVCEDIWGDLGVCETLAESGAEILLSPNGSPYYRGKVDVRHQVVLRQVIETGLPMIYANQLGGQDELVFDGASFAFNADKSLAFQMSQFEEAVAVSEWKRGAGGWISANGLKSRIPEGEEADYRACMLGFRDYVNKNGFRNVVLGLSGGIDSAICTALAVDALGEERVRTVMLPYRYTSRESLRDAEACAKALGCRYDIVAIEEPVEGFLSALADTFEGTEAGITEENLQSRTRGTILMAISNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYALARWRNGTVPPGALGPSGEVIPQNIIDKAPSAELRPDQTDQDSLPPYPVLDDILECLVEKEMSTEEIVARGHEEATVHRIEHLLYIAEYKRRQSAPGVKITRKNFGRDRRYPITNRFRDRG
>NZ_CP021829.1|WP_010969512.1|2521249_2522077_-|TolB-family-protein
MRSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYEPEE
>NZ_CP021829.1|WP_013844508.1|2520216_2521239_+|LacI-family-transcriptional-regulator
MAHPFLVKDIAFQAGLSTATVDRVLNGRRGVRQQTVMRVNAAIRELERQQAGLEVQGRKYAVDVVMEAPERFTEAVRKAFESEAATFMPTVFRSRFHFAETMRPQDISQLLDRIRLRGTDGVVLKAPDVPEIAAAVARLENAGVAVVTLVTDLPHSSRTAYAGADNRAAGETAAYLIGERFADRPATVLVTISSSRFRGEEEREIGFRRVLREKYPHIGVVEISEGHGRNEETGALALKAIASHPEINAAYSIGGGNRAVLDAFGQLQRGCVLFVAHDLDEDNLDLLRQGLVQFVLHHDLKTDVRMAFHAVLERRGALRASEKRHLSAVEVITPYNLPRI
>NZ_CP021829.1|WP_010969510.1|2518925_2520119_-|phytanoyl-CoA-dioxygenase
MKTDNPARARLERVWLNEAACDIEEFRAAVEHRVSLADYPHAADCQKNILIYDSARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVANLLQVSSAFGRAMETVDREHMCVVLFPALKVLAAGGKLTQDEIANAVAACAEGYSFPTNLDRDPPVGGLAPRTQAQLMHEALAGEWSVEAFAEALADQAAKKLS
>NZ_CP021829.1|WP_010969509.1|2517732_2518554_-|SDR-family-oxidoreductase
MSTDHARLDGKIAIVTGGTQGLGATIAALFAERGAAGVVICGRNAAKGEAKAAEIAAATGSKVVYVPADLERVEDARAVAAACDRAFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEVIKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHDAPANWLEKAAASQPFGRLVDPAEVARACAYLSSAESGLMTGSVICFDQSIWGAYDASPHPEAPL
>NZ_CP021829.1|WP_010969508.1|2516751_2517435_-|5,6-dimethylbenzimidazole-synthase
MLPDPNGCLTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
>NZ_CP021829.1|WP_010969507.1|2515600_2516728_+|DUF2865-domain-containing-protein
MSASPKVASKIRRIAAVLVPLALAAAGPAAASGVCERLSARLAGLPTGFTTNASLRDFTGAVSRQNIELRRAKNDRRRMECSSDSVVVIGGDDEAACAELDDTIARMEASLRQLKAQRRHLIGGGDDDVRRRILAAMELNGCSGAPREGWDAGSAEGQFASAADGTEVHRNILRDLPPDSGAYPLLLDAPRAELPLTDDDFAGSLRTMCVRTCDGAFFPISSHATPADFGRDADLCRARCPGAETELYYHVLATEEADQMVSATTGRPYTDLPTAFAYRARSVGSPGICGCGIPDPATDANGQKAVSAGKLTVVSPSVITIGSEKKAPAKPIAERPYDPAKNKVRVVGPTFLPQEESAIDLKHPLGPRYQPLQEN
>NZ_CP021829.1|WP_003534106.1|2514788_2515433_+|autoinducer-synthase
MIRIVNGNGRSQHPQAIDEMFRLRKRVFHDFLKWDVKTEGDWEIDHYDKANPLYVMSYSPDTGKIRGSLRLLPTLGPNMLDDTFPILLGDNPEIRSASVWESSRFCIDPEISQDRASNQVTIAAAELMCGVGEMSLASGISHIVTVTDVFLERMFRRMGCPGERIADPHRIGSVHAVAIAWEVSRNLLETMKAVASIEGTVLDRPMSLETARAA
>NZ_CP021829.1|WP_003534108.1|2513894_2514632_+|transcriptional-regulator
MANQQAVLNLLDIVEYGGCADPERFFALMRRTFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLYRIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALIPTI
>NZ_CP021829.1|WP_010969515.1|2526576_2526999_+|pilus-assembly-protein
MSVFNRLLASRKGAAAIEFAIIAPLFFMCVLTLIAYGIYLSAAHSIQQVAADAARTAIAGLSLEERERLATDYIRRTTMNQTFIDSSRMNVTVRDDANNTNQFTVTISYDASDLPIWKLFTFALPGEQIERYATIRVGGI
>NZ_CP021829.1|WP_013844510.1|2527000_2528734_+|hypothetical-protein
MHGATTAFRRCLKSRTGNIGVSAALVMPLVVASMGLGIDYGYLTLQRRELQSVADLASIAAAADVSSAEEAVLAHFRSNDLGFAVSTPSGLMTVDGKLLPNDVETAAKGVATIVRGRYVPDPAIDAGQRFIRGALPADAVQVTLEKKGDIYLAALFSEPPDLSVIGTAASSKIAAFSVGSRLASLNGGLLNAILGQMLGTNIALKVMDYEALIDADIDIQPFLKIIATRLSLTAASYEDVLTAELTVPQLLGSLRLVQGLSGTVTSALKTVELATAGNKQTLTLAQILNIDPKKSLGVDAGSDWAMKVSALQIVSAAAVIANGEHQIALDAVAGLPGIASVKVRLAIGEPPLETPSHRLGSPGAAVRTAQTRLAVEVVIDGLAALAGTRIRLPIYVELAHAEAKLSDIRCYGGTPENAAVIIDAVPGVAEIALGDVDPTVLSSFSSDARVTRARLLDGLIKIDGIAHVESKNLQPSRLAFSPAEVSSRTIKSVSTRDILSSTTRTLLGNLDAQINVGGLLSIGSPTLLQQALAQTLGAVTAPVDQLLYNLLLLVGVRVGEADVRVTGVKCQRPVLVQ
>NZ_CP021829.1|WP_010969517.1|2528875_2529778_+|hypothetical-protein
MQRVAEKGSSEQQVPTGLTVGDLVRNPNFPQILQAGARTLIALNDLFPRVARLVASHQKWMLTQAAYSLHLERDVNNPESGITAARLLKFMRDTGGASRNTAAAFLAELVAYKMLQPASGGRTKRARPLEPTEVSETAMRLWFKSQMSTIDLLDGGTRVERVEADKSIFERAQPLAARRLLSDSRWTTPPKGVAIFVWSESGGVILDDLMTRVSEFAPMDGKVWVEVSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEYVSWQAVKIEALASAYDQASDWAA
>NZ_CP021829.1|WP_010969518.1|2529799_2530195_-|GFA-family-protein
MEINEGGCLCGAVRFKTRGKLRELIFCHCSQCRKQTGLYYAATNVLDREMEVEGVENVTWYRSSNEARRGFCRYCGSALFWKADGLDYTSILAGTFDGSVALEPGYHIFCADKGHYYDISDDLPRFAGSRP
>NZ_CP021829.1|WP_003535070.1|2530330_2531704_-|3-deoxy-7-phosphoheptulonate-synthase-class-II
MAQTWTPNSWRQKPIQQVPDYPDLAVLDSVEARLAKYPPLVFAGEARRLKSALANVAEGRGFLLQGGDCAESFAEHGADTIRDFFRAFLQMAVVLTFGAQQPVVKVGRIAGQFAKPRSSGVEKQGDVTLPSYRGDIINGIEFTEEARVPNPERQVMAYRQSAATLNLLRAFAMGGYANLENVHQWMLGFVKDSPQAERYRKLADRISETMDFMKAIGITAENHPSLRETDFFTSHEALLLGYEQALTRVDSTSGDWYATSGHMIWIGDRTRQPDHAHIEYCRGIKNPLGLKCGPSLTADGLLELIDILNPANEAGRLTLICRFGHDKVAEHLPRLIRAVEREGKKVVWSCDPMHGNTITLNNYKTRPFERILSEVESFFQIHRAEGSHPGGIHIEMTGNDVTECTGGARALSGDDLADRYHTHCDPRLNADQALELAFLLAERMKGGRDEKKMVVNG
>NZ_CP021829.1|WP_010969519.1|2531936_2533328_-|glutathione-disulfide-reductase
MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGERVG
>NZ_CP021829.1|WP_003535074.1|2533532_2534075_-|DUF2059-domain-containing-protein
MNKFAGLARTFATAAILVSVSVPAVRAQDVTEDQIKAARATIAALGVTNSFDNILPNLAERLKNTLIQASPNHQELITATVDEKALSLAGRRSDLEREAATIYAKTFTVEELNAIADFYNSTAGKKLLNDGPIASREMLKAADIWAAGVSRDLTSEATKSLDEKIGNAPAANAGAAAPAQ
>NZ_CP021829.1|WP_003535076.1|2534186_2534882_-|ribose-5-phosphate-isomerase-RpiA
MDARQMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASGFQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGRIPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEGARTLTAS
>NZ_CP021829.1|WP_010969520.1|2535101_2535785_+|phosphoglycolate-phosphatase
MSLPLVVFDLDGTLVDTAPDLVASLNHAVTQAGIEPVTYADLTHLVGHGARAMIERTFALRGRTIAEEELTWQMKEFVDFYHGSMPGESLPYPGLIEALDRLQDAGLKLAVCTNKPEMLAKRLLEGLGLLGRFAAISGGDTFTVRKPHADHLLSTVSNAGGMAERAVMVGDSLNDVLVARNASVPSIVVPFGYSDVPIESLLPDRIIGHFDELTPDLVETVLSRKPK
>NZ_CP021829.1|WP_010969521.1|2535817_2537713_-|murein-L,D-transpeptidase
MRIIKSAAIVTLMSGCVVATMDVQPASAITFMDFIRGGKKRDVQEQVQPRRQLPGVDMFAPQRLDQKAAKPPRITGPRYYTYKAEPLRRIATDRLVDPVVTGSVLNGALPPMLRSPLADARQFLPEVDVRAPAEVAKAVENFYGTRTDFLWIEGTGVSGRAKAALGVLSDAAKVGLDPLDYAVIVPPEDFDRGDMIAREKDLVRFEIAMSAAVLTYVQDTVRGRIDPNRISGYHDFKRKNVDLLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGGRVVPSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLGVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFDDVYERDMYMNRAFEATRKARSLEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1765109 : 1770789

Rhizobium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088201970.1\|1765109_1765469_-	hypothetical protein	B4UTV3	Rhizobium_phage	6.6e-05	37.2
WP_088201971.1\|1765461_1766046_-	hypothetical protein	A0A0F6YP10	Sinorhizobium_phage	1.3e-13	55.7
WP_088201972.1\|1766035_1766470_-	DUF968 domain-containing protein	NA	NA	NA	NA
WP_088201973.1\|1766470_1766650_-	hypothetical protein	NA	NA	NA	NA
WP_088201974.1\|1766646_1767075_-	hypothetical protein	NA	NA	NA	NA
WP_088201975.1\|1767074_1767554_-	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	4.2e-39	50.9
WP_088201976.1\|1767553_1768066_-	DNA repair protein Rad52	A0A1B1IQW3	uncultured_Mediterranean_phage	2.4e-24	48.5
WP_157718294.1\|1768062_1768656_-	hypothetical protein	NA	NA	NA	NA
WP_153514719.1\|1768748_1768892_-	hypothetical protein	NA	NA	NA	NA
WP_153514721.1\|1769279_1769456_-	hypothetical protein	NA	NA	NA	NA
WP_088201980.1\|1769455_1769695_-	hypothetical protein	A0A0U2BX35	Paracoccus_phage	3.1e-06	40.4
WP_088201981.1\|1769691_1769949_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_088202203.1\|1769948_1770149_-	hypothetical protein	NA	NA	NA	NA
WP_088201982.1\|1770283_1770625_-	hypothetical protein	NA	NA	NA	NA
WP_153514723.1\|1770636_1770789_-	hypothetical protein	A0A0F6WCV9	Sinorhizobium_phage	1.3e-05	82.8

DBSCAN-SWA_2

2118565 : 2129813

uncultured_Mediterranean_phage(80.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969277.1\|2118565_2119600_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6
WP_086017693.1\|2119693_2120512_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.7e-32	34.7
WP_010969279.1\|2120504_2121224_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.8e-40	45.2
WP_010969280.1\|2121288_2122398_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	37.6
WP_003534564.1\|2122492_2122699_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.2e-08	65.9
WP_010969282.1\|2122772_2123420_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534569.1\|2123416_2124259_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_017277617.1\|2124395_2125679_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-101	47.0
WP_088202034.1\|2125706_2126477_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.2e-22	30.9
WP_014526709.1\|2126473_2127127_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.6e-15	34.6
WP_010969285.1\|2127297_2127951_+	biotin transport regulator	NA	NA	NA	NA
WP_010969286.1\|2128274_2129813_+	LysM peptidoglycan-binding domain-containing protein	I3PV24	Clostridium_phage	1.0e-14	32.8

DBSCAN-SWA_3

2207098 : 2270494

Sinorhizobium_phage(31.71%)

integrase,protease,head,transposase,tail,capsid,tRNA,portal,terminase

attL 2205270:2205287|attR 2246536:2246553

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2205270:2205287	attL	NA	NA	NA	NA
WP_046067457.1\|2207098_2208472_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_153318583.1\|2208625_2208802_+	hypothetical protein	NA	NA	NA	NA
WP_010969335.1\|2208875_2209712_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003528321.1\|2209713_2210493_-	TatD family hydrolase	NA	NA	NA	NA
WP_010969336.1\|2210507_2212058_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	5.1e-102	38.6
WP_010969337.1\|2212287_2212599_+	pyrophosphatase	NA	NA	NA	NA
WP_010969338.1\|2212689_2213721_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	7.3e-12	29.2
WP_003528315.1\|2213717_2214422_-	dTMP kinase	M1PSC7	Streptococcus_phage	3.2e-35	40.3
WP_010969340.1\|2214479_2215634_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.1e-43	32.5
WP_003528312.1\|2215690_2216731_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.6e-17	51.1
WP_003528311.1\|2217180_2217396_+	hypothetical protein	NA	NA	NA	NA
WP_003528309.1\|2217456_2217717_+	hypothetical protein	NA	NA	NA	NA
WP_010969343.1\|2220093_2221632_+	DUF1254 domain-containing protein	M1IA53	Paramecium_bursaria_Chlorella_virus	5.0e-33	28.8
WP_013844460.1\|2221998_2222163_+	hypothetical protein	NA	NA	NA	NA
WP_003528303.1\|2222387_2223104_+	transcriptional repressor LexA	A0A0N9RTK0	Paenibacillus_phage	1.2e-05	34.4
WP_014526762.1\|2223442_2224522_-	calcium-binding protein	NA	NA	NA	NA
WP_010969345.1\|2224922_2225270_+	membrane protein	NA	NA	NA	NA
WP_010969346.1\|2225317_2225611_-	hypothetical protein	NA	NA	NA	NA
WP_088202036.1\|2225996_2227331_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_088202037.1\|2227422_2228457_-	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	3.2e-124	64.5
WP_088202038.1\|2228653_2229022_+	hypothetical protein	NA	NA	NA	NA
WP_088202039.1\|2229195_2229585_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_153428668.1\|2229728_2231369_+	calcium-binding protein	NA	NA	NA	NA
WP_153428669.1\|2231659_2232313_-	hypothetical protein	NA	NA	NA	NA
WP_088202042.1\|2232442_2232775_-	DUF1515 domain-containing protein	A0A291AUW4	Sinorhizobium_phage	1.1e-41	81.5
WP_153428670.1\|2232774_2233014_-	hypothetical protein	J7F8X5	Agrobacterium_phage	1.2e-15	58.8
WP_088202043.1\|2232898_2233135_-	hypothetical protein	A0A291AUV7	Sinorhizobium_phage	3.0e-22	67.9
WP_088202206.1\|2233134_2233923_-	glycoside hydrolase family 108 protein	A0A1V0DY74	Dinoroseobacter_phage	4.2e-28	34.2
WP_088202044.1\|2234041_2234233_+	hypothetical protein	NA	NA	NA	NA
WP_088202045.1\|2234398_2235310_-	hypothetical protein	NA	NA	NA	NA
WP_088202046.1\|2235508_2236279_+	ABC transporter permease	NA	NA	NA	NA
WP_088202047.1\|2236252_2237128_-	hypothetical protein	NA	NA	NA	NA
WP_088202048.1\|2237267_2238509_+	hypothetical protein	NA	NA	NA	NA
WP_088202049.1\|2238526_2238757_+	hypothetical protein	NA	NA	NA	NA
WP_153428672.1\|2241460_2243647_-	hypothetical protein	A0A291AUU6	Sinorhizobium_phage	0.0e+00	73.9
WP_088202051.1\|2243643_2244045_-	hypothetical protein	A0A291AUV2	Sinorhizobium_phage	3.6e-52	74.1
WP_088202052.1\|2244034_2244619_-	transcriptional regulator	A0A291AUU9	Sinorhizobium_phage	2.2e-106	92.8
WP_088202053.1\|2244621_2245344_-	hypothetical protein	A0A291AUU7	Sinorhizobium_phage	5.9e-69	56.7
WP_088202054.1\|2245343_2247569_-	tape measure protein	A0A141GEX2	Brucella_phage	1.0e-39	30.5
2246536:2246553	attR	NA	NA	NA	NA
WP_088202055.1\|2247681_2248110_-	gene transfer agent family protein	A0A141GEX0	Brucella_phage	1.9e-43	68.5
WP_088202056.1\|2248109_2248565_-	hypothetical protein	A0A141GEW9	Brucella_phage	1.7e-34	47.7
WP_088202057.1\|2248633_2248834_-	hypothetical protein	NA	NA	NA	NA
WP_088202058.1\|2248833_2249244_-	DUF3168 domain-containing protein	B4UTQ1	Rhizobium_phage	4.6e-34	56.7
WP_088202059.1\|2249240_2249672_-	hypothetical protein	A0A141GEW6	Brucella_phage	7.7e-32	51.3
WP_088202060.1\|2249671_2250016_-\|head,tail	head-tail adaptor protein	B4UTP9	Rhizobium_phage	1.5e-14	38.7
WP_088202061.1\|2250019_2250517_-	hypothetical protein	NA	NA	NA	NA
WP_088202062.1\|2250541_2251129_-	hypothetical protein	A0A141GEW4	Brucella_phage	1.5e-46	46.9
WP_088202063.1\|2251589_2251979_-	hypothetical protein	A0A0F7L2Y9	uncultured_marine_virus	1.3e-09	42.0
WP_088202064.1\|2252052_2253456_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	3.7e-83	42.0
WP_088202065.1\|2253466_2254324_-\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	6.8e-64	51.1
WP_088202066.1\|2254396_2255674_-\|portal	phage portal protein	A0A2D1GNU4	Pseudomonas_phage	5.6e-62	37.2
WP_088202067.1\|2255687_2257394_-\|terminase	terminase large subunit	I3ULZ6	Rhodobacter_phage	1.3e-191	60.6
WP_088202068.1\|2257377_2257869_-	hypothetical protein	I3ULZ5	Rhodobacter_phage	3.7e-30	46.8
WP_088202069.1\|2257955_2258213_-	hypothetical protein	A0A068C9A1	Rhizobium_phage	2.1e-13	52.4
WP_088202070.1\|2258258_2258621_-	HNH endonuclease	I3ULZ4	Rhodobacter_phage	2.0e-33	58.0
WP_088202071.1\|2258826_2259486_-	antitermination protein NusG	NA	NA	NA	NA
WP_088202072.1\|2259469_2260699_-	helix-turn-helix domain-containing protein	A0A291AUS5	Sinorhizobium_phage	7.6e-109	70.1
WP_088202073.1\|2260863_2262168_+	hypothetical protein	NA	NA	NA	NA
WP_088202074.1\|2262176_2262482_-	hypothetical protein	A0A291AUK8	Sinorhizobium_phage	4.0e-19	53.1
WP_088202075.1\|2262482_2264000_-	S-adenosylmethionine-binding protein	A0A2I7RQZ3	Vibrio_phage	5.3e-11	28.9
WP_088202076.1\|2264145_2264394_-	hypothetical protein	NA	NA	NA	NA
WP_024311587.1\|2264393_2264615_-	hypothetical protein	NA	NA	NA	NA
WP_088202077.1\|2264614_2265067_-	hypothetical protein	NA	NA	NA	NA
WP_088202078.1\|2265286_2265538_-	hypothetical protein	R9TNB3	Rhizobium_phage	5.1e-12	52.0
WP_088202207.1\|2265626_2266328_+	LexA family transcriptional regulator	R9TRS6	Rhizobium_phage	3.6e-55	46.8
WP_088202079.1\|2266549_2266732_+	hypothetical protein	NA	NA	NA	NA
WP_088202080.1\|2266852_2267026_+	hypothetical protein	NA	NA	NA	NA
WP_088202081.1\|2267315_2267612_+	hypothetical protein	A0A291AUJ5	Sinorhizobium_phage	1.5e-18	61.2
WP_088202082.1\|2267767_2268889_+	phage Gp37/Gp68 family protein	A0A291AUR0	Sinorhizobium_phage	1.3e-134	62.0
WP_088202083.1\|2268885_2269587_+	hypothetical protein	A0A219YFC7	Ochrobactrum_phage	1.1e-43	45.0
WP_088202084.1\|2269583_2270120_+	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	2.1e-26	44.9
WP_088202085.1\|2270116_2270494_+	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	1.6e-46	68.3

DBSCAN-SWA_4

2692914 : 2700148

Sinorhizobium_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969636.1\|2692914_2693253_-	DUF1515 domain-containing protein	A0A291AUW4	Sinorhizobium_phage	2.5e-38	75.9
WP_086017682.1\|2693245_2693539_-	hypothetical protein	A0A076G7I0	Sinorhizobium_phage	1.6e-09	49.3
WP_010969637.1\|2693617_2694430_-	membrane protein	L7TMU6	Rhizobium_phage	6.9e-26	38.1
WP_074934873.1\|2694441_2694624_+	hypothetical protein	NA	NA	NA	NA
WP_010969638.1\|2694875_2695718_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_010969640.1\|2695807_2696272_-	hypothetical protein	A0A0F6R5Y6	Sinorhizobium_phage	4.2e-28	44.4
WP_088202101.1\|2696271_2697705_-	DNA packaging protein	C8CLI4	Xylella_phage	4.8e-171	65.1
WP_003530046.1\|2697844_2698186_+	GFA family protein	NA	NA	NA	NA
WP_010969642.1\|2698211_2698367_-	DUF3309 domain-containing protein	NA	NA	NA	NA
WP_010969643.1\|2698705_2699110_+	hypothetical protein	NA	NA	NA	NA
WP_011970797.1\|2699202_2700148_+\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7

DBSCAN-SWA_5

3033469 : 3043104

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003532953.1\|3033469_3035524_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6
WP_107010522.1\|3035612_3035738_-	hypothetical protein	NA	NA	NA	NA
WP_013844736.1\|3035956_3036991_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_010969853.1\|3037014_3038202_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	9.2e-35	27.8
WP_010969854.1\|3038461_3040372_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_010969855.1\|3040417_3042421_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_003532937.1\|3042654_3043104_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4

DBSCAN-SWA_6

3074870 : 3124431

Klosneuvirus(14.29%)

tRNA,protease,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969874.1\|3074870_3075590_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003534512.1\|3075645_3075951_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_010969876.1\|3076181_3077285_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_003534506.1\|3077757_3078213_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010969877.1\|3078209_3078680_+	MaoC family dehydratase	NA	NA	NA	NA
WP_003534501.1\|3078725_3079268_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-35	45.5
WP_010969878.1\|3079442_3079628_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_010969879.1\|3079646_3080906_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	4.3e-51	42.1
WP_010969880.1\|3080902_3081535_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_003534495.1\|3081531_3082155_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_010969882.1\|3082513_3083527_+	MoxR family ATPase	NA	NA	NA	NA
WP_010969883.1\|3083530_3084451_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010969884.1\|3084447_3087261_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_010969885.1\|3087271_3089341_+	membrane protein	NA	NA	NA	NA
WP_010969886.1\|3089355_3089907_-	N-acetyltransferase	NA	NA	NA	NA
WP_010969887.1\|3090164_3091157_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010969888.1\|3091322_3091529_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_088202132.1\|3091591_3092500_+	cell filamentation protein Fic	NA	NA	NA	NA
WP_010969890.1\|3092624_3093116_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003534453.1\|3093198_3094101_+	metallophosphoesterase	NA	NA	NA	NA
WP_010969891.1\|3094294_3094810_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003534449.1\|3094813_3095641_+	anti-sigma factor	NA	NA	NA	NA
WP_003534446.1\|3095763_3096192_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_010969893.1\|3096188_3096440_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_010969894.1\|3096577_3098287_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_003534440.1\|3098387_3098525_-	hypothetical protein	NA	NA	NA	NA
WP_003534438.1\|3098758_3099346_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3
WP_010969897.1\|3101387_3102299_-	aminoglycoside phosphotransferase APH(3')	Q75ZG1	Hepacivirus	8.6e-17	30.2
WP_010969898.1\|3102330_3102795_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	47.1
WP_010969899.1\|3102791_3103712_-	cation transporter	NA	NA	NA	NA
WP_010969900.1\|3103880_3106070_-	anthranilate synthase	NA	NA	NA	NA
WP_088202133.1\|3106343_3108575_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_014529145.1\|3108698_3109685_+	extensin family protein	NA	NA	NA	NA
WP_010969903.1\|3109845_3111525_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_010969904.1\|3111615_3112839_-	DUF2333 family protein	NA	NA	NA	NA
WP_088202134.1\|3112842_3114132_-	hypothetical protein	NA	NA	NA	NA
WP_003537933.1\|3114315_3115479_+\|transposase	IS4-like element ISRm16 family transposase	NA	NA	NA	NA
WP_010969906.1\|3115656_3116061_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_010969907.1\|3116173_3118090_-	ATP-binding protein	NA	NA	NA	NA
WP_010969908.1\|3118093_3119242_-	hypothetical protein	NA	NA	NA	NA
WP_003535848.1\|3119303_3120392_-	hypothetical protein	NA	NA	NA	NA
WP_010969910.1\|3120552_3121140_-	thymidine kinase	A0A0K2FHC3	Enterobacter_phage	4.1e-52	54.7
WP_088202135.1\|3121426_3122383_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013844756.1\|3122539_3123385_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010969913.1\|3123381_3124431_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-20	33.7

DBSCAN-SWA_7

3589013 : 3602737

Pelagibacter_phage(22.22%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088202164.1\|3589013_3591596_-	hypothetical protein	Q5GQD0	Synechococcus_phage	6.5e-09	36.0
WP_088202165.1\|3591595_3592138_-	hypothetical protein	NA	NA	NA	NA
WP_088202166.1\|3592137_3594591_-	hypothetical protein	A0A0F7L7G6	uncultured_marine_virus	9.5e-111	30.2
WP_157718308.1\|3594751_3595093_+	hypothetical protein	W6PP19	Citrobacter_phage	6.7e-07	36.4
WP_088202168.1\|3595089_3595878_-	hypothetical protein	M1I7K5	Pelagibacter_phage	1.0e-10	31.6
WP_088202169.1\|3595930_3596359_-	hypothetical protein	A0A221SAL8	Ralstonia_phage	4.5e-08	35.2
WP_088202170.1\|3596371_3597283_-	hypothetical protein	A0A1B1IW42	uncultured_Mediterranean_phage	2.4e-75	53.5
WP_088202171.1\|3597426_3598311_-	hypothetical protein	NA	NA	NA	NA
WP_088202172.1\|3598307_3598574_-	hypothetical protein	NA	NA	NA	NA
WP_088202173.1\|3598566_3600168_-	hypothetical protein	M1INZ1	Pelagibacter_phage	4.6e-114	44.4
WP_088202174.1\|3600316_3600838_-	hypothetical protein	NA	NA	NA	NA
WP_088202175.1\|3600834_3602241_-	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	6.6e-32	39.9
WP_088202176.1\|3602308_3602737_-\|terminase	terminase small subunit protein	F8TUR4	EBPR_podovirus	2.3e-36	58.4

DBSCAN-SWA_8

3610479 : 3618130

Sinorhizobium_phage(37.5%)

integrase

attL 3610806:3610819|attR 3624658:3624671

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_153514723.1\|3610479_3610632_+	hypothetical protein	A0A0F6WCV9	Sinorhizobium_phage	1.3e-05	82.8
WP_088201982.1\|3610643_3610985_+	hypothetical protein	NA	NA	NA	NA
3610806:3610819	attL	NA	NA	NA	NA
WP_088202203.1\|3611119_3611320_+	hypothetical protein	NA	NA	NA	NA
WP_088201981.1\|3611319_3611577_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_088201980.1\|3611573_3611813_+	hypothetical protein	A0A0U2BX35	Paracoccus_phage	3.1e-06	40.4
WP_153514721.1\|3611812_3611989_+	hypothetical protein	NA	NA	NA	NA
WP_153514719.1\|3612376_3612520_+	hypothetical protein	NA	NA	NA	NA
WP_157718312.1\|3612471_3613206_+	ribonuclease H	NA	NA	NA	NA
WP_088201976.1\|3613202_3613715_+	DNA repair protein Rad52	A0A1B1IQW3	uncultured_Mediterranean_phage	2.4e-24	48.5
WP_088201975.1\|3613714_3614194_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	4.2e-39	50.9
WP_088201974.1\|3614193_3614622_+	hypothetical protein	NA	NA	NA	NA
WP_088201973.1\|3614618_3614798_+	hypothetical protein	NA	NA	NA	NA
WP_088201972.1\|3614798_3615233_+	DUF968 domain-containing protein	NA	NA	NA	NA
WP_088201971.1\|3615222_3615807_+	hypothetical protein	A0A0F6YP10	Sinorhizobium_phage	1.3e-13	55.7
WP_088201970.1\|3615799_3616159_+	hypothetical protein	B4UTV3	Rhizobium_phage	6.6e-05	37.2
WP_088202195.1\|3616325_3616538_-	hypothetical protein	B4UTV0	Rhizobium_phage	1.0e-13	52.9
WP_088202196.1\|3616871_3617303_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_088202197.1\|3617146_3618130_+\|integrase	site-specific integrase	A0A291AUQ3	Sinorhizobium_phage	1.9e-09	23.4
3624658:3624671	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021830

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021831

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP021829

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection