CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP021800	Sinorhizobium meliloti strain USDA1021 chromosome, complete genome	2 crisprs	csa3,cas3,WYL,DEDDh	1	0	8
NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	3 crisprs	csa3,RT	0	3	2
NZ_CP021803	Sinorhizobium meliloti strain USDA1021 plasmid accessoryA, complete sequence	0 crisprs	WYL,RT	0	0	3
NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1 crisprs	DEDDh	0	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021800_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021800_1

516514-516626

Orphan

Consensus_repeat	Method
ATTCCTGTGACGAGCACAGGAATGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021800_1

>merge|NZ_CP021800|1|516514-516626|CRISPRCasFinder
ATTCCTGTGACGAGCACAGGAATGAGGGAGGCGGGGATGCACGGCCTGCGAGAAGTATTCCGAAGGACCGTACCCTCTCTGCCTCATTCCTGTGACAAGCACAGGAATGAGGG

>NZ_CP021800|1|1|516514-516626|CRISPRCasFinder
ATTCCTGTGACGAGCACAGGAATGAGGG	AGGCGGGGATGCACGGCCTGCGAGAAGTATTCCGAAGGACCGTACCCTCTCTGCCTC
ATTCCTGTGACAAGCACAGGAATGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021800.1\|WP_010969515.1\|515702_516125_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP021800.1\|WP_013844508.1\|521462_522485_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NZ_CP021800.1\|WP_010969510.1\|522582_523776_+\|phytanoyl-CoA-dioxygenase	unknown	unknown	gnl\|CDD\|227609
NZ_CP021800.1\|WP_013844507.1\|525973_527101_-\|DUF2865-domain-containing-protein	unknown	unknown	gnl\|CDD\|371363
NZ_CP021800.1\|WP_003534106.1\|527268_527913_-\|autoinducer-synthase	unknown	unknown	gnl\|CDD\|226430
NZ_CP021800.1\|WP_088203173.1\|518939_520622_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP021800.1\|WP_010969517.1\|512923_513826_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021800.1\|WP_010969509.1\|524147_524969_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180462
NZ_CP021800.1\|WP_010969512.1\|520624_521452_+\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NZ_CP021800.1\|WP_010969519.1\|509373_510765_+\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|213618
NZ_CP021800.1\|WP_003535076.1\|507819_508515_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_CP021800.1\|WP_010969518.1\|512506_512902_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP021800.1\|WP_013844510.1\|513967_515701_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NZ_CP021800.1\|WP_010969508.1\|525266_525950_+\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NZ_CP021800.1\|WP_010969521.1\|504988_506884_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225536
NZ_CP021800.1\|WP_003535070.1\|510997_512371_+\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662
NZ_CP021800.1\|WP_003534108.1\|528069_528807_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NZ_CP021800.1\|WP_010969520.1\|506916_507600_-\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP021800.1\|WP_003534093.1\|516751_518671_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP021800.1\|WP_003535074.1\|508626_509169_+\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725

Protein	Function_ID	Function_description	E-value
NZ_CP021800.1\|WP_010969515.1\|515702_516125_-\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	2.76293e-23
NZ_CP021800.1\|WP_013844508.1\|521462_522485_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	1.08222e-88
NZ_CP021800.1\|WP_010969510.1\|522582_523776_+\|phytanoyl-CoA-dioxygenase	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	4.07293e-103
NZ_CP021800.1\|WP_013844507.1\|525973_527101_-\|DUF2865-domain-containing-protein	gnl\|CDD\|371363	pfam11064, DUF2865, Protein of unknown function (DUF2865). This bacterial family of proteins has no known function.	1.21353e-30
NZ_CP021800.1\|WP_003534106.1\|527268_527913_-\|autoinducer-synthase	gnl\|CDD\|226430	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.55042e-97
NZ_CP021800.1\|WP_088203173.1\|518939_520622_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP021800.1\|WP_010969508.1\|525266_525950_+\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	4.8092e-111
NZ_CP021800.1\|WP_010969509.1\|524147_524969_+\|SDR-family-oxidoreductase	gnl\|CDD\|180462	PRK06198, PRK06198, short chain dehydrogenase; Provisional.	7.66456e-165
NZ_CP021800.1\|WP_010969512.1\|520624_521452_+\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	1.73907e-62
NZ_CP021800.1\|WP_010969519.1\|509373_510765_+\|glutathione-disulfide-reductase	gnl\|CDD\|213618	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. [Energy metabolism, Electron transport].	0
NZ_CP021800.1\|WP_003535076.1\|507819_508515_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.21528e-117
NZ_CP021800.1\|WP_010969518.1\|512506_512902_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.93053e-44
NZ_CP021800.1\|WP_013844510.1\|513967_515701_-\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	0
NZ_CP021800.1\|WP_003534108.1\|528069_528807_-\|transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	3.50703e-21
NZ_CP021800.1\|WP_010969521.1\|504988_506884_+\|murein-L,D-transpeptidase	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP021800.1\|WP_003535070.1\|510997_512371_+\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NZ_CP021800.1\|WP_010969520.1\|506916_507600_-\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.43772e-103
NZ_CP021800.1\|WP_003534093.1\|516751_518671_-\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.21123e-140
NZ_CP021800.1\|WP_003535074.1\|508626_509169_+\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	3.19008e-64

>NZ_CP021800.1|WP_010969515.1|515702_516125_-|pilus-assembly-protein
MSVFNRLLASRKGAAAIEFAIIAPLFFMCVLTLIAYGIYLSAAHSIQQVAADAARTAIAGLSLEERERLATDYIRRTTMNQTFIDSSRMNVTVRDDANNTNQFTVTISYDASDLPIWKLFTFALPGEQIERYATIRVGGI
>NZ_CP021800.1|WP_013844510.1|513967_515701_-|hypothetical-protein
MHGATTAFRRCLKSRTGNIGVSAALVMPLVVASMGLGIDYGYLTLQRRELQSVADLASIAAAADVSSAEEAVLAHFRSNDLGFAVSTPSGLMTVDGKLLPNDVETAAKGVATIVRGRYVPDPAIDAGQRFIRGALPADAVQVTLEKKGDIYLAALFSEPPDLSVIGTAASSKIAAFSVGSRLASLNGGLLNAILGQMLGTNIALKVMDYEALIDADIDIQPFLKIIATRLSLTAASYEDVLTAELTVPQLLGSLRLVQGLSGTVTSALKTVELATAGNKQTLTLAQILNIDPKKSLGVDAGSDWAMKVSALQIVSAAAVIANGEHQIALDAVAGLPGIASVKVRLAIGEPPLETPSHRLGSPGAAVRTAQTRLAVEVVIDGLAALAGTRIRLPIYVELAHAEAKLSDIRCYGGTPENAAVIIDAVPGVAEIALGDVDPTVLSSFSSDARVTRARLLDGLIKIDGIAHVESKNLQPSRLAFSPAEVSSRTIKSVSTRDILSSTTRTLLGNLDAQINVGGLLSIGSPTLLQQALAQTLGAVTAPVDQLLYNLLLLVGVRVGEADVRVTGVKCQRPVLVQ
>NZ_CP021800.1|WP_010969517.1|512923_513826_-|hypothetical-protein
MQRVAEKGSSEQQVPTGLTVGDLVRNPNFPQILQAGARTLIALNDLFPRVARLVASHQKWMLTQAAYSLHLERDVNNPESGITAARLLKFMRDTGGASRNTAAAFLAELVAYKMLQPASGGRTKRARPLEPTEVSETAMRLWFKSQMSTIDLLDGGTRVERVEADKSIFERAQPLAARRLLSDSRWTTPPKGVAIFVWSESGGVILDDLMTRVSEFAPMDGKVWVEVSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEYVSWQAVKIEALASAYDQASDWAA
>NZ_CP021800.1|WP_010969518.1|512506_512902_+|GFA-family-protein
MEINEGGCLCGAVRFKTRGKLRELIFCHCSQCRKQTGLYYAATNVLDREMEVEGVENVTWYRSSNEARRGFCRYCGSALFWKADGLDYTSILAGTFDGSVALEPGYHIFCADKGHYYDISDDLPRFAGSRP
>NZ_CP021800.1|WP_003535070.1|510997_512371_+|3-deoxy-7-phosphoheptulonate-synthase-class-II
MAQTWTPNSWRQKPIQQVPDYPDLAVLDSVEARLAKYPPLVFAGEARRLKSALANVAEGRGFLLQGGDCAESFAEHGADTIRDFFRAFLQMAVVLTFGAQQPVVKVGRIAGQFAKPRSSGVEKQGDVTLPSYRGDIINGIEFTEEARVPNPERQVMAYRQSAATLNLLRAFAMGGYANLENVHQWMLGFVKDSPQAERYRKLADRISETMDFMKAIGITAENHPSLRETDFFTSHEALLLGYEQALTRVDSTSGDWYATSGHMIWIGDRTRQPDHAHIEYCRGIKNPLGLKCGPSLTADGLLELIDILNPANEAGRLTLICRFGHDKVAEHLPRLIRAVEREGKKVVWSCDPMHGNTITLNNYKTRPFERILSEVESFFQIHRAEGSHPGGIHIEMTGNDVTECTGGARALSGDDLADRYHTHCDPRLNADQALELAFLLAERMKGGRDEKKMVVNG
>NZ_CP021800.1|WP_010969519.1|509373_510765_+|glutathione-disulfide-reductase
MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGERVG
>NZ_CP021800.1|WP_003535074.1|508626_509169_+|DUF2059-domain-containing-protein
MNKFAGLARTFATAAILVSVSVPAVRAQDVTEDQIKAARATIAALGVTNSFDNILPNLAERLKNTLIQASPNHQELITATVDEKALSLAGRRSDLEREAATIYAKTFTVEELNAIADFYNSTAGKKLLNDGPIASREMLKAADIWAAGVSRDLTSEATKSLDEKIGNAPAANAGAAAPAQ
>NZ_CP021800.1|WP_003535076.1|507819_508515_+|ribose-5-phosphate-isomerase-RpiA
MDARQMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASGFQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGRIPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEGARTLTAS
>NZ_CP021800.1|WP_010969520.1|506916_507600_-|phosphoglycolate-phosphatase
MSLPLVVFDLDGTLVDTAPDLVASLNHAVTQAGIEPVTYADLTHLVGHGARAMIERTFALRGRTIAEEELTWQMKEFVDFYHGSMPGESLPYPGLIEALDRLQDAGLKLAVCTNKPEMLAKRLLEGLGLLGRFAAISGGDTFTVRKPHADHLLSTVSNAGGMAERAVMVGDSLNDVLVARNASVPSIVVPFGYSDVPIESLLPDRIIGHFDELTPDLVETVLSRKPK
>NZ_CP021800.1|WP_010969521.1|504988_506884_+|murein-L,D-transpeptidase
MRIIKSAAIVTLMSGCVVATMDVQPASAITFMDFIRGGKKRDVQEQVQPRRQLPGVDMFAPQRLDQKAAKPPRITGPRYYTYKAEPLRRIATDRLVDPVVTGSVLNGALPPMLRSPLADARQFLPEVDVRAPAEVAKAVENFYGTRTDFLWIEGTGVSGRAKAALGVLSDAAKVGLDPLDYAVIVPPEDFDRGDMIAREKDLVRFEIAMSAAVLTYVQDTVRGRIDPNRISGYHDFKRKNVDLLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGGRVVPSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLGVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFDDVYERDMYMNRAFEATRKARSLEG
>NZ_CP021800.1|WP_003534093.1|516751_518671_-|LTA-synthase-family-protein
MARIDSAVSSSQVYADGESSSARYTRTLSGARSALFTLLIAIALVFTVEVIVRWSWPDTVAYFADPMRPAWTTVAVFFLAMLGVDALFGREHKAALLIAPLAVVPAFISQQKQVFLSDPLYPTDFLFGRQIMELMPVLVKDRPWTAVGVVAGLIAAIVVGALLLRFAWQNFPKLTRRERLMRIAFALPLLVAFWNIMDYNQFSWIRDRLRVIPIMWDQTENYRHNGFALAFAINLPMANVNAPAGYMADAIDRIPVKPLPAGTTHRGKPDVIVLMSESFWDPTRLPKVKLTPDPMPTIRELQGGNVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRNPIPSLATFFRGEGYVSRAIHPFQGWFWNRTAVYKAFGFDMFRSEENMPAMQKRGIFASDESLTKEIIRQADEVEDPFFFFAVTLQGHGPYEANRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDSLKMLMDWAKERDRETIIVLFGDHLPPLNTVYSSTGYMKGITAERKGPKDQMKAEHETPLVVWSNKTGPKKNIGTISPAFLSYQILKQAGYEHPYYTGFLGKVYDHYRVLDRYMLIRKNGKDVADWLRQPKVPASLRDYRFLQHDMMFGKRYSTERFFKSHAELYSAGL
>NZ_CP021800.1|WP_088203173.1|518939_520622_+|NAD+-synthase
MTAQKAAPSTLRIAVAQLNPTVGDIAGNVAKAREARTAAAREGADLLLLTELFISGYPPEDLVLKPAFLKACEQAVEKLAAETADGGPGVVIGFPRQAAGLRHNSVAVLDGGRVIAIRDKVDLPNYGEFDEKRVFDAGEMPGPVNFRGVRIGIPVCEDIWGDLGVCETLAESGAEILLSPNGSPYYRGKVDVRHQVVLRQVIETGLPMIYANQLGGQDELVFDGASFAFNADKSLAFQMSQFEEAVAVSEWKRGAGGWISANGLKSRIPEGEEADYRACMLGFRDYVNKNGFRKVVLGLSGGIDSAICTALAVDALGEERVRTVMLPYRYTSRESLRDAEACAKALGCRYDIVAIEEPVEGFLSALADTFEGTEAGITEENLQSRTRGTILMAISNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYALARWRNGTVPPGALGPSGEVIPQNIIDKAPSAELRPDQTDQDSLPPYPVLDDILECLVEKEMSTEEIVARGHEEATVHRIEHLLYIAEYKRRQSAPGVKITRKNFGRDRRYPITNRFRDRG
>NZ_CP021800.1|WP_010969512.1|520624_521452_+|TolB-family-protein
MRSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYEPEE
>NZ_CP021800.1|WP_013844508.1|521462_522485_-|LacI-family-transcriptional-regulator
MAHPFLVKDIAFQAGLSTATVDRVLNGRRGVRQQTVMRVNAAIRELERQQAGLEVQGRKYAVDVVMEAPERFTEAVRKAFESEAATFMPTVFRSRFHFAETMRPQDISQLLDRIRLRGTDGVVLKAPDVPEIAAAVARLENAGVAVVTLVTDLPHSSRTAYAGADNRAAGETAAYLIGERFADRPATVLVTISSSRFRGEEEREIGFRRVLREKYPHIGVVEISEGHGRNEETGALALKAIASHPEINAAYSIGGGNRAVLDAFGQLQRGCVLFVAHDLDEDNLDLLRQGLVQFVLHHDLKTDVRMAFHAVLERRGALRASEKRHLSAVEVITPYNLPRI
>NZ_CP021800.1|WP_010969510.1|522582_523776_+|phytanoyl-CoA-dioxygenase
MKTDNPARARLERVWLNEAACDIEEFRAAVEHRVSLADYPHAADCQKNILIYDSARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVANLLQVSSAFGRAMETVDREHMCVVLFPALKVLAAGGKLTQDEIANAVAACAEGYSFPTNLDRDPPVGGLAPRTQAQLMHEALAGEWSVEAFAEALADQAAKKLS
>NZ_CP021800.1|WP_010969509.1|524147_524969_+|SDR-family-oxidoreductase
MSTDHARLDGKIAIVTGGTQGLGATIAALFAERGAAGVVICGRNAAKGEAKAAEIAAATGSKVVYVPADLERVEDARAVAAACDRAFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEVIKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHDAPANWLEKAAASQPFGRLVDPAEVARACAYLSSAESGLMTGSVICFDQSIWGAYDASPHPEAPL
>NZ_CP021800.1|WP_010969508.1|525266_525950_+|5,6-dimethylbenzimidazole-synthase
MLPDPNGCLTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
>NZ_CP021800.1|WP_013844507.1|525973_527101_-|DUF2865-domain-containing-protein
MSASPKVASKIRRIAAVLVPLALAAAGPAAASGVCERLSARLAGLPTGFTTNASLRDFTGAVSRQNIELRRAKNDRRRMECSSDSVVVIGGDDEAACAELDDTIARMEANLRQLKAQRRHLIGGGDDDVRRRILAAMELNGCSGAPREGWDAGSAEGQFASAADGTEVHRNILRDLPPDSGAYPLLLDAPRAELPLTDDDFAGSLRTMCVRTCDGAFFPISSHATPADFGRDADLCRARCPGAETELYYHVLATEEADQMVSATTGRPYTDLPTAFAYRARSVGSPGICGCGIPDPATDANGQKAVSAGKLTVVSPSVITIGSEKKAPAKPIAERPYDPAKNKVRVVGPTFLPQEESAIDLKHPLGPRYQPLQEN
>NZ_CP021800.1|WP_003534106.1|527268_527913_-|autoinducer-synthase
MIRIVNGNGRSQHPQAIDEMFRLRKRVFHDFLKWDVKTEGDWEIDHYDKANPLYVMSYSPDTGKIRGSLRLLPTLGPNMLDDTFPILLGDNPEIRSASVWESSRFCIDPEISQDRASNQVTIAAAELMCGVGEMSLASGISHIVTVTDVFLERMFRRMGCPGERIADPHRIGSVHAVAIAWEVSRNLLETMKAVASIEGTVLDRPMSLETARAA
>NZ_CP021800.1|WP_003534108.1|528069_528807_-|transcriptional-regulator
MANQQAVLNLLDIVEYGGCADPERFFALMRRTFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLYRIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALIPTI

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Crispr_ID: NZ_CP021800_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021800_2

2102207-2102269

Orphan

Consensus_repeat	Method
CCCTCTCCCCGCATGCGGGGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021800_2

>merge|NZ_CP021800|2|2102207-2102269|CRISPRCasFinder
CCTTCTCCCCGCGCGCGGGGACGACCGCCCCTCACCCTAACCCTCTCCCCGCATGCGGGGAGA

>NZ_CP021800|2|2|2102207-2102269|CRISPRCasFinder
CCTTCTCCCCGCGCGCGGGGACG	ACCGCCCCTCACCCTAA
CCCTCTCCCCGCATGCGGGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021800.1\|WP_010968384.1\|2109746_2111147_-\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP021800.1\|WP_003531957.1\|2095312_2097172_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP021800.1\|WP_013844979.1\|2103706_2105098_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|223338
NZ_CP021800.1\|WP_010968386.1\|2107686_2108670_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP021800.1\|WP_013844980.1\|2092371_2093391_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP021800.1\|WP_010968394.1\|2090457_2092263_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP021800.1\|WP_010968391.1\|2099576_2101205_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NZ_CP021800.1\|WP_010968387.1\|2105228_2106038_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343
NZ_CP021800.1\|WP_010968389.1\|2102411_2103266_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP021800.1\|WP_010968390.1\|2101215_2102175_+\|glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240641
NZ_CP021800.1\|WP_003537933.1\|2106294_2107458_-\|IS4-like-element-ISRm16-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP021800.1\|WP_010968395.1\|2089621_2090440_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP021800.1\|WP_014529988.1\|2112586_2113315_-\|pilus-assembly-protein-CpaD	unknown	unknown	gnl\|CDD\|227748
NZ_CP021800.1\|WP_010968385.1\|2108677_2109688_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP021800.1\|WP_003531959.1\|2098434_2099568_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NZ_CP021800.1\|WP_003537743.1\|2103274_2103619_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP021800.1\|WP_003531955.1\|2093452_2093833_-\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|224716
NZ_CP021800.1\|WP_003531958.1\|2097352_2098435_+\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NZ_CP021800.1\|WP_010968392.1\|2093953_2095021_-\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|226293
NZ_CP021800.1\|WP_010968383.1\|2111277_2112564_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227298

Protein	Function_ID	Function_description	E-value
NZ_CP021800.1\|WP_010968384.1\|2109746_2111147_-\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	0
NZ_CP021800.1\|WP_003531957.1\|2095312_2097172_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP021800.1\|WP_013844979.1\|2103706_2105098_-\|leucyl-aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0
NZ_CP021800.1\|WP_010968386.1\|2107686_2108670_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	7.10359e-56
NZ_CP021800.1\|WP_013844980.1\|2092371_2093391_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.33162e-165
NZ_CP021800.1\|WP_010968394.1\|2090457_2092263_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP021800.1\|WP_010968391.1\|2099576_2101205_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NZ_CP021800.1\|WP_010968387.1\|2105228_2106038_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	1.63751e-80
NZ_CP021800.1\|WP_010968389.1\|2102411_2103266_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21182e-26
NZ_CP021800.1\|WP_010968390.1\|2101215_2102175_+\|glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240641	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family. This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.07536e-138
NZ_CP021800.1\|WP_003537933.1\|2106294_2107458_-\|IS4-like-element-ISRm16-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.69173e-26
NZ_CP021800.1\|WP_010968395.1\|2089621_2090440_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01351e-123
NZ_CP021800.1\|WP_014529988.1\|2112586_2113315_-\|pilus-assembly-protein-CpaD	gnl\|CDD\|227748	COG5461, COG5461, Type IV pili component [Cell motility and secretion].	3.19225e-111
NZ_CP021800.1\|WP_010968385.1\|2108677_2109688_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.38407e-115
NZ_CP021800.1\|WP_003531959.1\|2098434_2099568_+\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP021800.1\|WP_003537743.1\|2103274_2103619_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.39809e-11
NZ_CP021800.1\|WP_003531955.1\|2093452_2093833_-\|methylglyoxal-synthase	gnl\|CDD\|224716	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism].	2.60323e-72
NZ_CP021800.1\|WP_003531958.1\|2097352_2098435_+\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP021800.1\|WP_010968392.1\|2093953_2095021_-\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|226293	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane].	5.68793e-158
NZ_CP021800.1\|WP_010968383.1\|2111277_2112564_-\|transcriptional-regulator	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	6.1818e-120

>NZ_CP021800.1|WP_010968390.1|2101215_2102175_+|glyoxylate/hydroxypyruvate-reductase-A
MPAKSPVIVDLKFIPEEVEAALAGAFPGREVIDLADPAHQERDLSGIDYAVVWKSAPDLFSRAPDLKVVFSGGAGVDHVLTLPGLPDVPLVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESGLPLEHVVDKVAGY
>NZ_CP021800.1|WP_010968391.1|2099576_2101205_+|ABC-transporter-ATP-binding-protein
MTDTLLSVRDLSVAFHQGGETSLAVDRISFDIKRGETVALVGESGSGKSVSANSILKLLPYPAASHPSGEILFNGKDLLKASDDELRHVRGNDVTMIFQEPMTSLNPLHTIEQQIGEILEIHQDLKGAAARARTLELLEQVGIREAEKRLGAYPHQLSGGQRQRVMIAMALANRPELLIADEPTTALDVTVQAQILELLKSLKDEHGMSMLFITHDLGIVRKIADRVCVMTKGKIVETGPTAEIFANPQHAYTRHLLASEPRGEPPPSDASRPIVIEAKDMKVWFPIKAGFLRRVVDHVKAVDGIDLTLRAGQTLGVVGESGSGKTTLGLALTRLISSKGRIAFVGEDIDAYSFREMRPLRNRMQVVFQDPYGSLSPRMSIADIIGEGLKIHEKALTDGERDQRVAAALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPQFVMLDEPTSALDMSVQAQVVDLLRDLQRKHNLAYLFISHDLRVVRALANEVIVMRLGKVVEQGPAERIFEAPTEDYTKALMAAAFNLEAVNLAAVHQ
>NZ_CP021800.1|WP_003531959.1|2098434_2099568_+|ABC-transporter-permease
MSTATAYAGAPEKGWLTPIGRRRWQNFKANRRGYWSLWLFLLLFGLSLFAEFIANDKPILASYKGEILVPVLFDYPEEKFGGFLAETDYRSDFIRDEIGANGWMIWPPIRYSYQTVNSSIPHSAPTPPFWLMSEEERCSAYPQGADDPGCIAGNLNWLGTDDQARDVMARMIYGFRISVLFGLALTIASAVIGVSAGAVQGYFGGWTDLLMQRFIEIWSSMPVLYILLIIAAILPPGFFILLGIMLLFSWVGFVGVVRAEFLRARNFEYVNAARALGVGNGTIMYRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQGKSNLQAPWLGLTAFFAMSIMLSLLIFVGEATRDAFDPRKTFR
>NZ_CP021800.1|WP_003531958.1|2097352_2098435_+|microcin-C-ABC-transporter-permease-YejB
MGAYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVGGGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDLIIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTKNSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYIFSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFERRDV
>NZ_CP021800.1|WP_003531957.1|2095312_2097172_+|ABC-transporter-substrate-binding-protein
MPNFCRTVKPGLAASLLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKSAEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFDMVKEHNPLFSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKVPAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIADPAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELPYYGMDFPDAWWSKNTAAK
>NZ_CP021800.1|WP_010968392.1|2093953_2095021_-|penicillin-insensitive-murein-endopeptidase
MKFDARAALRRCGSTVLALIMGVSLVSAEAAANDAPPAKELFGAKDLPMQAAPASFGFYSKGCLAGGVAIPTDGPTWQAMRLSRNRRWGHPAMIALIERFSHDAVEKIGWPGLLLGDISQPRGGPMLSGHASHQIGLDADIWLTPMPQRTLSYQERETISATSMLDKSKFLTVDPSIWTPSHARLIMMAASYPQVERVFVNPAIKKKLCDTWRGDRAALGKVRPIYGHDYHFHIRIKCPPGSKGCKDQAVVPAGDGCDKSLAWWFTDEPWAKPKQKPGAKPPKPKFAKLADLPKACALVLNGPAPASEQEATYGTAYRAPAAIPAAATSIEAVIEAAGEAPLANIPVPSPRPGLQ
>NZ_CP021800.1|WP_003531955.1|2093452_2093833_-|methylglyoxal-synthase
MADRKCLALIAHDQKKDDLAAFAKANEAVLSKWKIVATGTTGGRVLDVCPALDIVRLKSGPLGGDQQIGALIATGDVDCLIFFVDPLTAMPHDVDVKALMRLAIVYDIPMALNRATAEQLIDFRRN
>NZ_CP021800.1|WP_013844980.1|2092371_2093391_-|glucokinase
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDKTSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLASLGLEDVLVINDFEAQALAIAAPADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFRIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMRTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR
>NZ_CP021800.1|WP_010968394.1|2090457_2092263_-|ABC-transporter-ATP-binding-protein
MNAKDRNKRAVDSETITGILKRVIAENGRDHIRGYAFAIACLVVVAATTGFTAWIMEAVVNEAFANRRADIVLLICGAIFAAFVLRGLATYGQAVALSKIGNNIVARYQRRLYAHLMALSVGYFHEHRSAQLAAKVSQNVSGIRDVLNMTVTSIARDLLTLIGLVVVMFSKDWLLSLIVFFVAPPLLLGLRYISRRLRLATREAVEVNSRVLGAMQETIQGITIVKAFTMENELRRKVESIIDRAENRANRIARLSERTAPMTETFAGLAISSVLAYAAFRTIYHNVPPGAFFAFVTALLMAYDPARRLARLQVSMERAAVNARMIYEILDTVPHQRDRPDATELRLGEATVELRDVRFAYGTGEEILKGVSFRAEGGKTTALVGPSGAGKSTIISLIPRFYDPLSGEILIDGQNIAGVTKQSLRAGLAYVSQQPYLFEGSIRDNIRYGRPDATDAEIEEAARLAYAHDFILAQPQGYDTPVGEHGVTLSGGQRQRLSIARALVRNAPVLLLDEATSALDTESEAAVQKALEEAMSGRTVIVIAHRLSTVVNADKIVVMKEGIVVEEGSHEELARRPDGLYARLHNLQGSGADTVAEAQIL
>NZ_CP021800.1|WP_010968395.1|2089621_2090440_-|4-hydroxy-tetrahydrodipicolinate-reductase
MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGVAVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARHARVIKSGNMSLGVNLLGVLTEKAARALPAGGWDIEILEMHHKHKVDAPSGTALLLGEAAARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSATDRSIFARGAVAAALWGRSRKPGFYSMLDVLGLD
>NZ_CP021800.1|WP_010968389.1|2102411_2103266_-|C40-family-peptidase
MPEVLDRRLNAYREDIAEARLRGLVEAKRFVEGTPAAVSVPVTPLRARPEAGCGTDTELLYGETVRVLDVADGWAWVRSDLDGYVGYVPENVVQPPQAPATHLVAVPRTFVYRGADLRFPQAFALSMGSRIAVVGEAETRGTRYFLLDGGLAIVADHCIPAAGALTEDYVAIAARFLETPYLWGGRSGFGIDCSGLVQLAMQMAGRNAPRDSDMQASGLGRAIEREELTRGDLVFWKGHVAIMEDEKTLLHANGHTMTVAREGLEDAIRRIGWLYAQPTGYRRP
>NZ_CP021800.1|WP_003537743.1|2103274_2103619_-|winged-helix-turn-helix-transcriptional-regulator
MPVELTPSQALGLWHAVSLEQVRVDSRDLTLRQMAILLQIYLVPPPHTVRGLAASLGVTKPVITRALDTMGALGLVDRIRDERDRRNVIIKRTVEGALYLEKFGDLIINQGRKM
>NZ_CP021800.1|WP_013844979.1|2103706_2105098_-|leucyl-aminopeptidase
MAPFQFIERQSPFNTSNGKTLPIFAVTPAHIETGSIDPIALDWAKKAGFKAESGAVLLIPSADGHLGGALFGLGANPSDAPFLTGKLARALPAGKWHIETAPLTANRLALGYGLGSYRFERYKSAKTDAPTLLIPADSDATDIKRQLAGVFLARDLINTPTNDMGPEALEAAFRALAAHYKADVSVISGEALLTENFPLVHTVGRASAEAPRLLEMRWGRKGHRKVTLVGKGVCFDTGGLDIKPAASMLLMKKDMGGAANVMGLALMIMDAKLKVDLRVIVPVVENSISANAFRPGDIYKSRKGLTVQIDNTDAEGRLILADALAYADEEKTDLVVDMATLTGAARVALGPDLPPFFTDDDDLARDLAEASLTVDDPVWRMPLYRGYDKDVSARIADLTNAPSGGMAGSITAALFLKRFVTNAKSWVHFDIFGWAQSERPHSPIGGEAQAIRALYHHIGRIAG
>NZ_CP021800.1|WP_010968387.1|2105228_2106038_+|tetratricopeptide-repeat-protein
MTMQDNFSFSLRRLATGVAVAMVALSLSACAGQQGRKELTTGSIPKLTRPVQSMNATELAAAAERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIAGQELTSEQAEANVAYLRSVLSQQGAWKQLAKAD
>NZ_CP021800.1|WP_003537933.1|2106294_2107458_-|IS4-like-element-ISRm16-family-transposase
MRFTPSIFAQLLKAIDRRSFQAIVDRHAGDAYDKCFTSWDHLVALIYAQLSATTSLRGLEASFNANSQHHYHLGSGRLMRSTLSDANRRRPVAVFAETFALLAGQLDRQTRREGTKMLRLIDSTPIPLGKLYDWAKSNGRIRGMKLHVVYDPKADCPGILDITDANVNDAQIGRTITIEKGATYVFDKGYCHYGWWTAIAEAGASFVTRPKTNMGLALVAERPVEQPQGDGFLVLEDSQVSLASKGDSKLPIGLRRVIVKRQDGDTITLLTNDLERSAVEIGQLYKDRWQIELLFRWIKQHLKIRKFLGNNDNAIRLQIFAAMIAYALLRIAARLARVPLPILRFTDLVTQCLFQRKSIAEIHKPPQVNPSRPKPRTIPNQMVFRYA
>NZ_CP021800.1|WP_010968386.1|2107686_2108670_-|type-II-secretion-system-F-family-protein
MAGWIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIQVADKF
>NZ_CP021800.1|WP_010968385.1|2108677_2109688_-|type-II-secretion-system-F-family-protein
MFGIDITVLGLAGLVALAAAALAYGVLYPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFDI
>NZ_CP021800.1|WP_010968384.1|2109746_2111147_-|CpaF-family-protein
MPAVQPVPVERSAAPVLGETVAAPSRPQAAAPPQRRRAPRAEDYYDTKSQVFSALIDTIDLSQLSKLDIESAREEIRDIVNDIITIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDIADIMVNGAGQIFIEVGGKVEESEIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGTALTIRKFKKDKLTLEQLVRFGSITPEAAVLLQIIGRVRCNIVISGGTGSGKTTLLNCLTRYIDSTERIITCEDSAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYTLPARTVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIVGRHVSTGIGRPHFWDRARYFNEDKRLAATLDAMEKQQ
>NZ_CP021800.1|WP_010968383.1|2111277_2112564_-|transcriptional-regulator
MNAIEYTIDSGGTGDWPADGTRPGDLEQLRPLPRISIHAFCESEAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELAPLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEPLGRSLAFIGAKGGCGSSVIAHNCAWGISNLFSTETILADLDLPYGTANIDFDQDPPQGIAEAVFAPERLDEVFLDRLLTRCSEHLSLLAAPSMLDRAYDFETGAFQPILEILQRSAPVSVLDLPHGWTDWTRSVLSAADEVVITAAPDLASLRNAKNLLDALKKLRPNDKVPHLVLNQVGVPKRPEIAPDEFCASLEIEAAAIIPFDAVLFGNASNSGRMIAEIDRKSPAAETFAQLSHLLTGRTAIKKARRGGLGKVLAKLGRR
>NZ_CP021800.1|WP_014529988.1|2112586_2113315_-|pilus-assembly-protein-CpaD
MQKRSAARTSLERQPPMALNRLPHRVVLYAIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWRGTDKGDGGTTIVFN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP021800_2	2.1\|2102230\|17\|NZ_CP021800\|CRISPRCasFinder	2102230-2102246	17	NZ_CP021800.1	45436-45452	1	0.941

1. spacer 2.1|2102230|17|NZ_CP021800|CRISPRCasFinder matches to position: 45436-45452, mismatch: 1, identity: 0.941

accgcccctcaccctaa	CRISPR spacer
actgcccctcaccctaa	Protospacer
**.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

284964 : 325402

Sinorhizobium_phage(58.82%)

tail,transposase,terminase,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088203129.1\|284964_286098_+	site-specific DNA-methyltransferase	A0A1B0VM49	Pseudomonas_phage	2.0e-63	39.1
WP_088203130.1\|286336_286552_+	hypothetical protein	A0A076G6Y4	Sinorhizobium_phage	1.3e-08	71.8
WP_088203131.1\|286887_287283_+	hypothetical protein	M9Q2G6	Clostridium_phage	9.2e-08	40.3
WP_088203132.1\|287224_288001_+	hypothetical protein	NA	NA	NA	NA
WP_088203133.1\|287997_288399_+	GcrA cell cycle regulator	NA	NA	NA	NA
WP_088203134.1\|288411_289017_+	hypothetical protein	A0A076G6H3	Sinorhizobium_phage	1.7e-16	46.7
WP_088203135.1\|289155_289383_+	hypothetical protein	NA	NA	NA	NA
WP_088203136.1\|289452_289704_-	acyl carrier protein	NA	NA	NA	NA
WP_017265617.1\|289745_289931_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_017265615.1\|290201_290477_-	hypothetical protein	NA	NA	NA	NA
WP_014529537.1\|290499_291000_+\|terminase	terminase small subunit	A0A076GD11	Sinorhizobium_phage	3.2e-29	44.4
WP_038439132.1\|291003_292335_+	DNA-packaging protein	Q1WDG8	Streptomyces_phage	5.8e-38	32.8
WP_088203137.1\|292343_293726_+	DUF1073 domain-containing protein	L7TRA1	Rhizobium_phage	1.7e-128	51.3
WP_088203138.1\|293712_294279_-	hypothetical protein	NA	NA	NA	NA
WP_088203139.1\|294334_295480_+	DUF2213 domain-containing protein	A0A2R3UA67	Siphoviridae_environmental_samples	5.0e-78	47.4
WP_088203140.1\|295492_295963_+	hypothetical protein	A0A2H4J1G1	uncultured_Caudovirales_phage	1.0e-37	60.6
WP_088203141.1\|295988_296957_+	DUF2184 domain-containing protein	A0A2H4J526	uncultured_Caudovirales_phage	3.8e-140	75.9
WP_088203142.1\|296971_297313_+	hypothetical protein	A0A2H4J908	uncultured_Caudovirales_phage	8.0e-08	52.5
WP_088203143.1\|297364_297859_+	hypothetical protein	A0A059VG19	Pseudomonas_phage	6.5e-19	42.8
WP_088203389.1\|297882_298044_-	hypothetical protein	NA	NA	NA	NA
WP_088203144.1\|298124_298490_+	hypothetical protein	A0A076G8G5	Sinorhizobium_phage	7.4e-44	76.8
WP_088203145.1\|298787_299297_-	lipocalin family protein	A0A1W6JNX6	Morganella_phage	5.7e-18	36.2
WP_088203146.1\|299375_300413_+\|head	head morphogenesis protein	A0A076G6I6	Sinorhizobium_phage	2.2e-77	50.0
WP_088203147.1\|300412_300859_+	hypothetical protein	A0A076G8G8	Sinorhizobium_phage	1.6e-16	37.1
WP_088203148.1\|301065_301491_+	hypothetical protein	NA	NA	NA	NA
WP_017272431.1\|301492_301978_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	9.3e-10	30.7
WP_017272432.1\|301992_302394_+	hypothetical protein	NA	NA	NA	NA
WP_017272451.1\|302489_302723_+	hypothetical protein	NA	NA	NA	NA
WP_088203149.1\|302719_303394_-	hypothetical protein	NA	NA	NA	NA
WP_088203150.1\|303514_303910_-	hypothetical protein	NA	NA	NA	NA
WP_088203151.1\|303970_306067_+\|tail	phage tail tape-measure protein	A0A076G7H2	Sinorhizobium_phage	6.8e-17	63.2
WP_014529559.1\|306063_306459_-	hypothetical protein	NA	NA	NA	NA
WP_017275434.1\|306522_307176_+	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	3.0e-56	56.0
WP_088194463.1\|307172_307763_+	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	3.2e-73	69.0
WP_088203152.1\|307862_308267_+	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	1.6e-47	71.6
WP_088203153.1\|308273_311021_+\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	1.3e-254	60.6
WP_088203154.1\|311020_312541_+	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	6.9e-245	80.6
WP_088203155.1\|312552_314574_+\|tail	tail fiber domain-containing protein	A0A2L2R219	Sinorhizobium_phage	1.8e-54	31.1
WP_127570040.1\|314725_315172_-	hypothetical protein	A0A291AUP2	Sinorhizobium_phage	2.0e-27	59.8
WP_017266899.1\|315919_316180_-	hypothetical protein	NA	NA	NA	NA
WP_088203157.1\|316275_316545_-	hypothetical protein	NA	NA	NA	NA
WP_088203158.1\|316722_317691_+	glycoside hydrolase family 19 protein	A0A076G6J8	Sinorhizobium_phage	3.1e-166	87.3
WP_088203159.1\|317690_318008_+	ammonia monooxygenase	A0A291AUV3	Sinorhizobium_phage	1.9e-35	65.1
WP_088203160.1\|318007_318292_+	hypothetical protein	A0A076G8H8	Sinorhizobium_phage	1.9e-26	62.8
WP_088203161.1\|318182_318437_+	hypothetical protein	A0A076G7I0	Sinorhizobium_phage	2.4e-25	73.5
WP_088203162.1\|318495_318861_+	hypothetical protein	A0A076GD39	Sinorhizobium_phage	9.0e-42	71.7
WP_088203391.1\|319505_319709_+	hypothetical protein	NA	NA	NA	NA
WP_088203163.1\|320522_320696_+	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_088203164.1\|320839_321208_-	hypothetical protein	NA	NA	NA	NA
WP_088203165.1\|321404_322439_+	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	1.2e-128	69.6
WP_088203166.1\|322447_322867_-	hypothetical protein	NA	NA	NA	NA
WP_010969659.1\|323463_323925_-	type II toxin-antitoxin system HicB family antitoxin	A0A0U4ISP5	Pseudomonas_phage	2.6e-17	43.4
WP_088203393.1\|323929_324118_-	type II toxin-antitoxin system HicA family toxin	A0A0R6PJD4	Moraxella_phage	3.1e-14	58.3
WP_088203167.1\|324183_325402_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	9.3e-75	53.5

DBSCAN-SWA_2

865189 : 876438

uncultured_Mediterranean_phage(80.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969286.1\|865189_866728_-	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	1.0e-14	32.8
WP_010969285.1\|867051_867705_-	biotin transport regulator	NA	NA	NA	NA
WP_014526709.1\|867876_868530_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.6e-15	34.6
WP_010969283.1\|868526_869297_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-22	30.9
WP_003534571.1\|869324_870608_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-101	47.0
WP_003534569.1\|870744_871587_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_010969282.1\|871583_872231_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534564.1\|872304_872511_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.2e-08	65.9
WP_010969280.1\|872605_873715_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	37.6
WP_010969279.1\|873779_874499_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.8e-40	45.2
WP_086017693.1\|874491_875310_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.7e-32	34.7
WP_010969277.1\|875403_876438_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6

DBSCAN-SWA_3

1374931 : 1380029

Sinorhizobium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969011.1\|1374931_1375228_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A222YWE2	Escherichia_phage	6.7e-19	49.0
WP_010969010.1\|1375241_1375550_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.9e-08	45.6
WP_088203195.1\|1376129_1377164_-	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	1.1e-124	66.7
WP_088203197.1\|1377370_1377739_+	hypothetical protein	NA	NA	NA	NA
WP_014526862.1\|1378273_1378639_-	hypothetical protein	A0A076GD39	Sinorhizobium_phage	1.2e-41	71.7
WP_088203198.1\|1378697_1378940_-	hypothetical protein	J7F8X5	Agrobacterium_phage	1.3e-15	61.2
WP_088203199.1\|1379060_1380029_-	chitinase	A0A076G6J8	Sinorhizobium_phage	1.1e-166	88.6

DBSCAN-SWA_4

1385086 : 1424760

Sinorhizobium_phage(78.38%)

tail,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088203205.1\|1385086_1387681_-	hypothetical protein	A0A076G8H4	Sinorhizobium_phage	2.0e-239	62.7
WP_088203206.1\|1387677_1388097_-	hypothetical protein	A0A076G6J4	Sinorhizobium_phage	1.4e-35	51.9
WP_088203207.1\|1388099_1388705_-	hypothetical protein	A0A076G707	Sinorhizobium_phage	4.2e-84	72.9
WP_088203208.1\|1388704_1389439_-	hypothetical protein	A0A076GD29	Sinorhizobium_phage	2.6e-96	68.4
WP_088203209.1\|1389442_1392319_-\|tail	phage tail tape measure protein	A0A076G7H2	Sinorhizobium_phage	4.6e-258	56.1
WP_088203210.1\|1392325_1392571_-	hypothetical protein	A0A076G6J1	Sinorhizobium_phage	7.4e-32	79.5
WP_027991937.1\|1392666_1393080_-	hypothetical protein	A0A076G701	Sinorhizobium_phage	1.2e-53	81.3
WP_088203211.1\|1393079_1393817_-	hypothetical protein	A0A076GD25	Sinorhizobium_phage	4.4e-112	84.1
WP_088203212.1\|1393873_1394317_-	hypothetical protein	A0A076G7G6	Sinorhizobium_phage	6.2e-37	52.4
WP_027991940.1\|1394492_1394975_-	hypothetical protein	A0A076G8G8	Sinorhizobium_phage	7.7e-65	76.9
WP_088203396.1\|1394974_1395973_-\|head	head morphogenesis protein	A0A076G6I6	Sinorhizobium_phage	5.0e-159	85.5
WP_088203213.1\|1396030_1396294_-	hypothetical protein	NA	NA	NA	NA
WP_088203214.1\|1396795_1397161_-	hypothetical protein	A0A076G8G5	Sinorhizobium_phage	1.5e-52	83.3
WP_088203215.1\|1397290_1397728_+	hypothetical protein	NA	NA	NA	NA
WP_088203216.1\|1397728_1398220_-	hypothetical protein	A0A076G6I4	Sinorhizobium_phage	3.2e-74	84.0
WP_015007394.1\|1398223_1398547_-	hypothetical protein	A0A076G6Z4	Sinorhizobium_phage	1.2e-26	57.0
WP_003528159.1\|1398603_1399653_-	hypothetical protein	A0A076GD16	Sinorhizobium_phage	4.9e-149	74.1
WP_088203217.1\|1399667_1400120_-	hypothetical protein	A0A076G7F5	Sinorhizobium_phage	4.1e-52	70.0
WP_015007393.1\|1400122_1401238_-	hypothetical protein	A0A076G8G2	Sinorhizobium_phage	3.5e-145	74.3
WP_088203218.1\|1401234_1402605_-	DUF1073 domain-containing protein	A0A076G6H8	Sinorhizobium_phage	1.4e-199	73.6
WP_088203219.1\|1402601_1404014_-\|terminase	phage terminase large subunit	A0A0S4KXH6	Pseudomonas_phage	1.3e-80	37.6
WP_088203220.1\|1404000_1404465_-	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	2.0e-30	50.0
WP_153497550.1\|1404483_1405110_-	hypothetical protein	F1C5D5	Cronobacter_phage	1.2e-41	43.7
WP_088203223.1\|1405447_1405594_-	hypothetical protein	NA	NA	NA	NA
WP_088203224.1\|1406043_1406655_-	hypothetical protein	A0A076G6H3	Sinorhizobium_phage	1.3e-32	39.0
WP_088203225.1\|1406788_1407316_-	hypothetical protein	NA	NA	NA	NA
WP_088203226.1\|1407312_1407741_-	GcrA cell cycle regulator	NA	NA	NA	NA
WP_088203227.1\|1407737_1408514_-	hypothetical protein	NA	NA	NA	NA
WP_088203228.1\|1408455_1409349_-	YdaU family protein	A0A076GD06	Sinorhizobium_phage	7.9e-47	67.8
WP_088203229.1\|1409272_1410487_-	phosphoadenosine phosphosulfate reductase family protein	R9TRT5	Rhizobium_phage	7.8e-199	80.5
WP_088203230.1\|1410483_1410837_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
WP_088203231.1\|1410833_1413335_-	DNA methylase N-4	A0A1J0GPR3	Mycobacterium_phage	0.0e+00	63.4
WP_088203232.1\|1413331_1414099_-	hypothetical protein	A0A291AUT5	Sinorhizobium_phage	4.2e-89	68.9
WP_086017944.1\|1414095_1414500_-	hypothetical protein	A0A076G6G6	Sinorhizobium_phage	2.0e-50	80.6
WP_088203234.1\|1415079_1416036_-	DUF2312 domain-containing protein	A0A0F6R615	Sinorhizobium_phage	4.5e-32	87.7
WP_088203235.1\|1416632_1416881_+	hypothetical protein	NA	NA	NA	NA
WP_015007369.1\|1416883_1417081_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015007368.1\|1417175_1417928_+	helix-turn-helix domain-containing protein	A0A291AUK0	Sinorhizobium_phage	2.3e-68	57.7
WP_015007367.1\|1417937_1418219_-	hypothetical protein	NA	NA	NA	NA
WP_088203236.1\|1418812_1419127_+	hypothetical protein	A0A076GCZ5	Sinorhizobium_phage	3.4e-21	56.0
WP_088203237.1\|1419123_1419447_+	hypothetical protein	NA	NA	NA	NA
WP_088203238.1\|1419443_1419887_+	hypothetical protein	F8TUU3	EBPR_podovirus	7.6e-19	55.4
WP_088197251.1\|1419895_1420162_+	hypothetical protein	A0A076GCZ2	Sinorhizobium_phage	5.9e-35	81.8
WP_088203239.1\|1420158_1420395_+	hypothetical protein	A0A076G7C7	Sinorhizobium_phage	8.2e-20	61.5
WP_088203240.1\|1420396_1420927_+	hypothetical protein	NA	NA	NA	NA
WP_088203241.1\|1420929_1421901_+	phage recombination protein Bet	NA	NA	NA	NA
WP_088203242.1\|1421902_1422424_+	hypothetical protein	B0VK83	Azospirillum_phage	1.6e-31	44.3
WP_088203243.1\|1422420_1422672_+	hypothetical protein	NA	NA	NA	NA
WP_013844161.1\|1422668_1422887_+	hypothetical protein	A0A076G6F8	Sinorhizobium_phage	2.5e-15	62.0
WP_088203244.1\|1422883_1423096_+	hypothetical protein	NA	NA	NA	NA
WP_088203245.1\|1423092_1423521_+	hypothetical protein	NA	NA	NA	NA
WP_088203246.1\|1423517_1423856_+	hypothetical protein	NA	NA	NA	NA
WP_088203247.1\|1423852_1424218_+	hypothetical protein	Q8W6F3	Sinorhizobium_phage	1.6e-46	74.2
WP_088203248.1\|1424214_1424760_+	hypothetical protein	A0A1L7N114	Ralstonia_phage	1.3e-23	48.3

DBSCAN-SWA_5

1596985 : 1634163

Sinorhizobium_phage(40.0%)

portal,head,integrase,protease,tail

attL 1632504:1632527|attR 1642056:1642079

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013844108.1\|1596985_1598401_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_010968898.1\|1598504_1599704_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010968897.1\|1599837_1600518_+	energy-coupling factor ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.2e-12	27.6
WP_010968896.1\|1600511_1601117_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_010968895.1\|1601148_1601712_+	biotin transporter BioY	NA	NA	NA	NA
WP_013844107.1\|1601716_1603213_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.2e-15	25.1
WP_014526637.1\|1603196_1604390_+	thiolase family protein	NA	NA	NA	NA
WP_010968892.1\|1604377_1604779_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_010968891.1\|1604792_1605761_+	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_010968890.1\|1605823_1606753_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	4.8e-47	35.2
WP_003535810.1\|1606756_1607008_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_003535807.1\|1607224_1608148_+	pirin family protein	NA	NA	NA	NA
WP_010968889.1\|1608344_1610282_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_013844547.1\|1611548_1611905_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	1.5e-46	84.7
WP_013844548.1\|1611907_1612459_-	hypothetical protein	A0A291AUL6	Sinorhizobium_phage	1.1e-46	83.0
WP_028004745.1\|1612484_1613390_-	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	1.3e-145	86.4
WP_088203260.1\|1613386_1615111_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	4.7e-290	84.6
WP_028004743.1\|1615107_1615344_-\|head,tail	head-to-tail joining protein	A0A291AUL5	Sinorhizobium_phage	4.9e-25	78.2
WP_017274500.1\|1617698_1618445_-	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	4.3e-115	83.5
WP_017267129.1\|1618612_1619407_-	hypothetical protein	R9TRT9	Rhizobium_phage	1.5e-52	44.8
WP_017273558.1\|1619684_1621493_-	primase	A0A0P0IX98	Lactobacillus_phage	6.2e-51	37.9
WP_017267131.1\|1621494_1622724_-	hypothetical protein	R9TNC4	Rhizobium_phage	7.6e-101	48.7
WP_013843977.1\|1622720_1623056_-	hypothetical protein	NA	NA	NA	NA
WP_013843976.1\|1623055_1623568_-	hypothetical protein	NA	NA	NA	NA
WP_017267132.1\|1623581_1623953_-	hypothetical protein	NA	NA	NA	NA
WP_026030356.1\|1623949_1624219_-	hypothetical protein	R9TRS8	Rhizobium_phage	3.1e-07	76.3
WP_013843974.1\|1624215_1624395_-	hypothetical protein	NA	NA	NA	NA
WP_127570023.1\|1624391_1624670_-	hypothetical protein	NA	NA	NA	NA
WP_017267134.1\|1624666_1624918_-	hypothetical protein	NA	NA	NA	NA
WP_013843972.1\|1625262_1625472_-	hypothetical protein	NA	NA	NA	NA
WP_013843971.1\|1625554_1626250_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013843969.1\|1626654_1626891_+	hypothetical protein	NA	NA	NA	NA
WP_017267135.1\|1627095_1627776_+	hypothetical protein	R9TQJ1	Rhizobium_phage	1.9e-40	46.3
WP_017267136.1\|1627779_1628274_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	7.7e-44	57.9
WP_013843965.1\|1628285_1628705_+	DUF2312 domain-containing protein	Q8W6H2	Sinorhizobium_phage	9.4e-35	66.7
WP_013843964.1\|1628704_1629070_+	hypothetical protein	NA	NA	NA	NA
WP_088203261.1\|1629062_1630181_+	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	1.9e-66	37.8
WP_017267138.1\|1630190_1630694_+	hypothetical protein	A0A218M329	Acidovorax_phage	1.6e-12	35.5
WP_017273560.1\|1630690_1631059_+	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	3.8e-56	81.3
WP_017267140.1\|1631237_1632395_+\|integrase	integrase	A0A067XRF8	Caulobacter_phage	2.1e-07	29.1
1632504:1632527	attL	NA	NA	NA	NA
WP_157719031.1\|1632618_1634163_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_157719031.1\|1632618_1634163_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1642056:1642079	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2613840 : 2669760

Sinorhizobium_phage(68.42%)

portal,head,transposase,integrase,terminase,tail,capsid

attL 2613007:2613052|attR 2661412:2661457

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2613007:2613052	attL	NA	NA	NA	NA
WP_088203400.1\|2613840_2614974_-\|integrase	site-specific integrase	A0A1W6JRD7	Corynebacterium_phage	7.0e-08	31.4
WP_088203306.1\|2615075_2615306_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_088203307.1\|2615926_2616862_-	DUF2303 family protein	A0A291AUR3	Sinorhizobium_phage	3.1e-94	56.6
WP_018010655.1\|2616892_2617237_-	hypothetical protein	R9TQI8	Rhizobium_phage	1.0e-31	63.2
WP_088203308.1\|2617249_2617729_-	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	4.6e-46	58.8
WP_088203309.1\|2617732_2618413_-	hypothetical protein	R9TQJ1	Rhizobium_phage	2.4e-43	49.0
WP_088203310.1\|2618415_2618607_-	hypothetical protein	NA	NA	NA	NA
WP_088203311.1\|2618609_2618798_-	hypothetical protein	NA	NA	NA	NA
WP_088203312.1\|2619043_2619685_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_088203313.1\|2619779_2620028_+	hypothetical protein	R9TNB3	Rhizobium_phage	1.1e-14	48.8
WP_088203314.1\|2620261_2620759_+	hypothetical protein	A0A068CCD6	Rhizobium_phage	4.8e-38	54.2
WP_088203315.1\|2620855_2621263_+	hypothetical protein	NA	NA	NA	NA
WP_088203316.1\|2621262_2621772_+	hypothetical protein	NA	NA	NA	NA
WP_088203317.1\|2621768_2622119_+	hypothetical protein	R9TQK2	Rhizobium_phage	7.1e-12	42.4
WP_088203318.1\|2622115_2623369_+	hypothetical protein	R9TNC4	Rhizobium_phage	8.3e-127	57.8
WP_088203319.1\|2623365_2625396_+	hypothetical protein	R9TSC7	Rhizobium_phage	8.4e-238	63.6
WP_088203320.1\|2625828_2626623_+	hypothetical protein	R9TRT9	Rhizobium_phage	5.0e-61	48.2
WP_088203321.1\|2626792_2627539_+	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	1.3e-114	83.5
WP_088203322.1\|2627703_2628324_+	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	2.4e-71	70.5
WP_088203323.1\|2628320_2630363_+\|terminase	terminase	A0A291AUK9	Sinorhizobium_phage	0.0e+00	89.2
WP_088203324.1\|2630373_2630610_+\|tail	phage tail protein	A0A291AUL5	Sinorhizobium_phage	7.6e-26	79.5
WP_088203325.1\|2630606_2632331_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	7.5e-288	84.2
WP_088203326.1\|2632327_2633233_+	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	3.1e-144	85.4
WP_088203327.1\|2633258_2633801_+	hypothetical protein	A0A291AUL6	Sinorhizobium_phage	2.8e-39	78.6
WP_088203328.1\|2633803_2634160_+\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	7.7e-46	81.4
WP_088203329.1\|2634185_2635217_+\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	9.3e-177	85.9
WP_088203330.1\|2635291_2635690_+	hypothetical protein	NA	NA	NA	NA
WP_088203331.1\|2635686_2636013_+	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	1.1e-33	69.8
WP_013844543.1\|2636015_2636312_+	hypothetical protein	A0A291AUM3	Sinorhizobium_phage	5.1e-27	63.9
WP_088203332.1\|2636313_2636778_+	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	5.7e-49	63.6
WP_088203333.1\|2636870_2637281_+\|tail	phage tail protein	A0A291AUM5	Sinorhizobium_phage	1.7e-52	76.5
WP_088203334.1\|2637295_2637697_+	hypothetical protein	A0A291AUM7	Sinorhizobium_phage	1.7e-49	77.5
WP_088203335.1\|2637690_2637936_+\|tail	phage tail assembly chaperone	A0A291AUN4	Sinorhizobium_phage	8.8e-25	67.1
WP_088203336.1\|2638209_2640081_+\|tail	tail tape measure protein	A0A291AUM6	Sinorhizobium_phage	3.8e-184	59.2
WP_088203337.1\|2640080_2640731_+	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	3.3e-79	69.6
WP_088203338.1\|2640727_2641318_+	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	1.8e-76	72.6
WP_011976009.1\|2641450_2641723_-	hypothetical protein	NA	NA	NA	NA
WP_088203339.1\|2641792_2642197_+	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	5.5e-48	71.6
WP_088203340.1\|2642203_2644957_+\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	2.4e-259	61.7
WP_088203341.1\|2644956_2646471_+	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	6.0e-265	87.8
WP_088203342.1\|2646482_2648507_+\|tail	tail fiber domain-containing protein	A0A2L2R219	Sinorhizobium_phage	2.7e-55	31.1
WP_014529428.1\|2649042_2649234_-	hypothetical protein	NA	NA	NA	NA
WP_011976001.1\|2649442_2649661_-	hypothetical protein	NA	NA	NA	NA
WP_088203343.1\|2649843_2650812_+	chitinase	A0A076G6J8	Sinorhizobium_phage	2.6e-165	87.7
WP_088203344.1\|2650808_2651090_+	hypothetical protein	A0A076G8H8	Sinorhizobium_phage	5.5e-23	60.2
WP_003528213.1\|2651293_2651659_+	hypothetical protein	A0A076GD39	Sinorhizobium_phage	3.1e-42	71.7
WP_014529434.1\|2652524_2652704_+	hypothetical protein	NA	NA	NA	NA
WP_088203345.1\|2652891_2654058_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_014529436.1\|2654491_2655229_-	necrosis-inducing protein	NA	NA	NA	NA
WP_014529437.1\|2655513_2655876_-	thiol reductase thioredoxin	NA	NA	NA	NA
WP_018009369.1\|2656886_2657549_+	hypothetical protein	NA	NA	NA	NA
WP_088203401.1\|2657611_2658562_+	S8/S53 family peptidase	NA	NA	NA	NA
WP_011975773.1\|2659264_2659774_+	nucleoside kinase	NA	NA	NA	NA
WP_088203346.1\|2660454_2661135_-	hypothetical protein	NA	NA	NA	NA
WP_010970334.1\|2661678_2662575_+	ROK family protein	NA	NA	NA	NA
2661412:2661457	attR	NA	NA	NA	NA
WP_010970333.1\|2662650_2663145_+	heme-degrading domain-containing protein	NA	NA	NA	NA
WP_013844887.1\|2663161_2664319_+	AGE family epimerase/isomerase	NA	NA	NA	NA
WP_010970331.1\|2664496_2668270_+	methionine synthase	A0A140XBC7	Dickeya_phage	1.1e-12	55.7
WP_088203347.1\|2668563_2669760_+\|transposase	IS256-like element ISRm5 family transposase	A0A0K2CZ57	Paenibacillus_phage	5.9e-74	43.6

DBSCAN-SWA_7

3296906 : 3328869

Leptospira_phage(16.67%)

transposase,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011970797.1\|3296906_3297853_-\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_088203378.1\|3298082_3299780_-	adenine deaminase	NA	NA	NA	NA
WP_010969917.1\|3299867_3301196_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_010969916.1\|3301285_3301819_-	ATP-binding protein	NA	NA	NA	NA
WP_013844758.1\|3301964_3302309_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013844757.1\|3302427_3303171_-	HugZ family protein	NA	NA	NA	NA
WP_010969913.1\|3303204_3304254_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-20	33.7
WP_013844756.1\|3304250_3305096_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010969911.1\|3305252_3306209_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010969910.1\|3306495_3307083_+	thymidine kinase	A0A0K2FHC3	Enterobacter_phage	4.1e-52	54.7
WP_003535848.1\|3307243_3308332_+	hypothetical protein	NA	NA	NA	NA
WP_014529834.1\|3308393_3309542_+	hypothetical protein	NA	NA	NA	NA
WP_010969907.1\|3309545_3311462_+	ATP-binding protein	NA	NA	NA	NA
WP_010969906.1\|3311574_3311979_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_003537933.1\|3312156_3313320_-\|transposase	IS4-like element ISRm16 family transposase	NA	NA	NA	NA
WP_010969905.1\|3313503_3314793_+	hypothetical protein	NA	NA	NA	NA
WP_010969904.1\|3314796_3316020_+	DUF2333 family protein	NA	NA	NA	NA
WP_010969903.1\|3316110_3317790_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_014529145.1\|3317950_3318937_-	extensin family protein	NA	NA	NA	NA
WP_088203379.1\|3319060_3321286_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_010969900.1\|3321559_3323749_+	anthranilate synthase	NA	NA	NA	NA
WP_010969899.1\|3323917_3324838_+	cation transporter	NA	NA	NA	NA
WP_010969898.1\|3324834_3325299_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	47.1
WP_010969897.1\|3325330_3326242_+	aminoglycoside phosphotransferase APH(3')	Q75ZG1	Hepacivirus	8.6e-17	30.2
WP_003534438.1\|3328281_3328869_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3

DBSCAN-SWA_8

3384522 : 3394157

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003532937.1\|3384522_3384972_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4
WP_010969855.1\|3385205_3387209_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_010969854.1\|3387254_3389165_+	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_088203404.1\|3389424_3390612_+	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	2.0e-34	27.8
WP_013844736.1\|3390635_3391670_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_107010522.1\|3391888_3392014_+	hypothetical protein	NA	NA	NA	NA
WP_003532953.1\|3392102_3394157_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021802

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021802_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021802_1

1302031-1302148

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021802_1

>merge|NZ_CP021802|1|1302031-1302148|CRISPRCasFinder
GATCGACCTCGCCGCCGCTACCGCCGACACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGCTGCTTCCGGCGCCGCCGACGCCGCCGCC

>NZ_CP021802|1|1|1302031-1302148|CRISPRCasFinder
GATCGACCTCGCCGCCGCTACCGCCGA	CACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGC
TGCTTCCGGCGCCGCCGACGCCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021802.1\|WP_088203853.1\|1309288_1312627_-\|hemolysin	unknown	unknown	gnl\|CDD\|225483
NZ_CP021802.1\|WP_027990785.1\|1317840_1319298_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP021802.1\|WP_017268478.1\|1306754_1307906_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP021802.1\|WP_088203852.1\|1298531_1299449_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP021802.1\|WP_080676568.1\|1294841_1295384_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_080589970.1\|1306271_1306664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_010975825.1\|1316112_1317135_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP021802.1\|WP_010975839.1\|1292560_1294342_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP021802.1\|WP_088203854.1\|1312811_1314854_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP021802.1\|WP_010975835.1\|1297209_1298451_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP021802.1\|WP_010975841.1\|1289290_1290268_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP021802.1\|WP_088203851.1\|1295586_1296096_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP021802.1\|WP_088203855.1\|1314859_1316023_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP021802.1\|WP_010975842.1\|1288670_1289294_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP021802.1\|WP_080599897.1\|1296258_1297185_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_017263486.1\|1307893_1308676_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP021802.1\|WP_017263485.1\|1308764_1309163_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_010975843.1\|1287580_1288471_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP021802.1\|WP_014527132.1\|1290264_1292490_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP021802.1\|WP_017264421.1\|1319294_1320569_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388

Protein	Function_ID	Function_description	E-value
NZ_CP021802.1\|WP_088203853.1\|1309288_1312627_-\|hemolysin	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	7.37389e-24
NZ_CP021802.1\|WP_027990785.1\|1317840_1319298_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP021802.1\|WP_014527132.1\|1290264_1292490_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP021802.1\|WP_088203852.1\|1298531_1299449_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.57212e-90
NZ_CP021802.1\|WP_010975825.1\|1316112_1317135_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021802.1\|WP_010975839.1\|1292560_1294342_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NZ_CP021802.1\|WP_088203854.1\|1312811_1314854_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021802.1\|WP_010975835.1\|1297209_1298451_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.37012e-67
NZ_CP021802.1\|WP_010975841.1\|1289290_1290268_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NZ_CP021802.1\|WP_088203851.1\|1295586_1296096_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.07664e-16
NZ_CP021802.1\|WP_088203855.1\|1314859_1316023_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021802.1\|WP_010975842.1\|1288670_1289294_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP021802.1\|WP_017263486.1\|1307893_1308676_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.24305e-66
NZ_CP021802.1\|WP_010975843.1\|1287580_1288471_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NZ_CP021802.1\|WP_017268478.1\|1306754_1307906_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.22141e-170
NZ_CP021802.1\|WP_017264421.1\|1319294_1320569_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.30219e-170

>NZ_CP021802.1|WP_088203852.1|1298531_1299449_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVIIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP021802.1|WP_010975835.1|1297209_1298451_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGFLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP021802.1|WP_080599897.1|1296258_1297185_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPERPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP021802.1|WP_088203851.1|1295586_1296096_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPVGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQECKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP021802.1|WP_080676568.1|1294841_1295384_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVVDDHCRVNQMIKCLRKEQNRLDVP
>NZ_CP021802.1|WP_010975839.1|1292560_1294342_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP021802.1|WP_014527132.1|1290264_1292490_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP021802.1|WP_010975841.1|1289290_1290268_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP021802.1|WP_010975842.1|1288670_1289294_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NZ_CP021802.1|WP_010975843.1|1287580_1288471_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NZ_CP021802.1|WP_080589970.1|1306271_1306664_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPVEVFAGSIRTRRPSCASVRAEHVAFFNRAGRRSRRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP021802.1|WP_017268478.1|1306754_1307906_+|sensor-histidine-kinase
MVVIAEPDLRPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NZ_CP021802.1|WP_017263486.1|1307893_1308676_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGEKVLDDTTTVPPVAMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP021802.1|WP_017263485.1|1308764_1309163_-|hypothetical-protein
MKRPTDRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPVRVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP021802.1|WP_088203853.1|1309288_1312627_-|hemolysin
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPSAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYEGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPRPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGDAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP021802.1|WP_088203854.1|1312811_1314854_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASAEGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALSVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQIAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP021802.1|WP_088203855.1|1314859_1316023_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEINGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLIIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALSMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP021802.1|WP_010975825.1|1316112_1317135_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP021802.1|WP_027990785.1|1317840_1319298_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP021802.1|WP_017264421.1|1319294_1320569_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAVFYAVTAAAEAGAEGGL

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Crispr_ID: NZ_CP021802_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021802_2

1302238-1302337

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021802_2

>merge|NZ_CP021802|2|1302238-1302337|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGAAGCCGCCGCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGTCGCCGCCCTGCCCGCCACCGCCGCCGAT

>NZ_CP021802|2|2|1302238-1302337|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGA	AGCCGCCGCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGT
CGCCGCCCTGCCCGCCACCGCCGCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021802.1\|WP_088203853.1\|1309288_1312627_-\|hemolysin	unknown	unknown	gnl\|CDD\|225483
NZ_CP021802.1\|WP_027990785.1\|1317840_1319298_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP021802.1\|WP_017268478.1\|1306754_1307906_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP021802.1\|WP_088203852.1\|1298531_1299449_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP021802.1\|WP_080676568.1\|1294841_1295384_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_080589970.1\|1306271_1306664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_010975825.1\|1316112_1317135_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP021802.1\|WP_010975839.1\|1292560_1294342_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP021802.1\|WP_088203854.1\|1312811_1314854_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP021802.1\|WP_010975835.1\|1297209_1298451_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP021802.1\|WP_010975841.1\|1289290_1290268_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP021802.1\|WP_088203851.1\|1295586_1296096_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP021802.1\|WP_088203855.1\|1314859_1316023_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP021802.1\|WP_010975842.1\|1288670_1289294_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP021802.1\|WP_080599897.1\|1296258_1297185_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_017263486.1\|1307893_1308676_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP021802.1\|WP_017263485.1\|1308764_1309163_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_010975843.1\|1287580_1288471_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP021802.1\|WP_014527132.1\|1290264_1292490_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP021802.1\|WP_017264421.1\|1319294_1320569_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388

Protein	Function_ID	Function_description	E-value
NZ_CP021802.1\|WP_088203853.1\|1309288_1312627_-\|hemolysin	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	7.37389e-24
NZ_CP021802.1\|WP_027990785.1\|1317840_1319298_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP021802.1\|WP_014527132.1\|1290264_1292490_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP021802.1\|WP_088203852.1\|1298531_1299449_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.57212e-90
NZ_CP021802.1\|WP_010975825.1\|1316112_1317135_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021802.1\|WP_010975839.1\|1292560_1294342_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NZ_CP021802.1\|WP_088203854.1\|1312811_1314854_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021802.1\|WP_010975835.1\|1297209_1298451_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.37012e-67
NZ_CP021802.1\|WP_010975841.1\|1289290_1290268_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NZ_CP021802.1\|WP_088203851.1\|1295586_1296096_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.07664e-16
NZ_CP021802.1\|WP_088203855.1\|1314859_1316023_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021802.1\|WP_010975842.1\|1288670_1289294_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP021802.1\|WP_017263486.1\|1307893_1308676_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.24305e-66
NZ_CP021802.1\|WP_010975843.1\|1287580_1288471_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NZ_CP021802.1\|WP_017268478.1\|1306754_1307906_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.22141e-170
NZ_CP021802.1\|WP_017264421.1\|1319294_1320569_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.30219e-170

>NZ_CP021802.1|WP_088203852.1|1298531_1299449_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVIIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP021802.1|WP_010975835.1|1297209_1298451_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGFLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP021802.1|WP_080599897.1|1296258_1297185_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPERPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP021802.1|WP_088203851.1|1295586_1296096_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPVGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQECKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP021802.1|WP_080676568.1|1294841_1295384_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVVDDHCRVNQMIKCLRKEQNRLDVP
>NZ_CP021802.1|WP_010975839.1|1292560_1294342_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP021802.1|WP_014527132.1|1290264_1292490_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP021802.1|WP_010975841.1|1289290_1290268_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP021802.1|WP_010975842.1|1288670_1289294_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NZ_CP021802.1|WP_010975843.1|1287580_1288471_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NZ_CP021802.1|WP_080589970.1|1306271_1306664_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPVEVFAGSIRTRRPSCASVRAEHVAFFNRAGRRSRRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP021802.1|WP_017268478.1|1306754_1307906_+|sensor-histidine-kinase
MVVIAEPDLRPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NZ_CP021802.1|WP_017263486.1|1307893_1308676_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGEKVLDDTTTVPPVAMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP021802.1|WP_017263485.1|1308764_1309163_-|hypothetical-protein
MKRPTDRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPVRVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP021802.1|WP_088203853.1|1309288_1312627_-|hemolysin
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPSAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYEGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPRPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGDAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP021802.1|WP_088203854.1|1312811_1314854_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASAEGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALSVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQIAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP021802.1|WP_088203855.1|1314859_1316023_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEINGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLIIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALSMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP021802.1|WP_010975825.1|1316112_1317135_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP021802.1|WP_027990785.1|1317840_1319298_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP021802.1|WP_017264421.1|1319294_1320569_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAVFYAVTAAAEAGAEGGL

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Crispr_ID: NZ_CP021802_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021802_3

1302412-1302531

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021802_3

>merge|NZ_CP021802|3|1302412-1302531|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCGCACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGGTGCCGCCCGCACCGCCGCCGCCGCCGA

>NZ_CP021802|3|3|1302412-1302531|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCG	CACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGG
TGCCGCCCGCACCGCCGCCGCCGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021802.1\|WP_088203853.1\|1309288_1312627_-\|hemolysin	unknown	unknown	gnl\|CDD\|225483
NZ_CP021802.1\|WP_027990785.1\|1317840_1319298_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP021802.1\|WP_017268478.1\|1306754_1307906_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP021802.1\|WP_088203852.1\|1298531_1299449_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP021802.1\|WP_080676568.1\|1294841_1295384_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_080589970.1\|1306271_1306664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_010975825.1\|1316112_1317135_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP021802.1\|WP_010975839.1\|1292560_1294342_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP021802.1\|WP_088203854.1\|1312811_1314854_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP021802.1\|WP_010975835.1\|1297209_1298451_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP021802.1\|WP_010975841.1\|1289290_1290268_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP021802.1\|WP_088203851.1\|1295586_1296096_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP021802.1\|WP_088203855.1\|1314859_1316023_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP021802.1\|WP_010975842.1\|1288670_1289294_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP021802.1\|WP_080599897.1\|1296258_1297185_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_017263486.1\|1307893_1308676_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP021802.1\|WP_017263485.1\|1308764_1309163_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021802.1\|WP_010975843.1\|1287580_1288471_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP021802.1\|WP_014527132.1\|1290264_1292490_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP021802.1\|WP_017264421.1\|1319294_1320569_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388

Protein	Function_ID	Function_description	E-value
NZ_CP021802.1\|WP_088203853.1\|1309288_1312627_-\|hemolysin	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	7.37389e-24
NZ_CP021802.1\|WP_027990785.1\|1317840_1319298_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP021802.1\|WP_014527132.1\|1290264_1292490_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP021802.1\|WP_088203852.1\|1298531_1299449_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.57212e-90
NZ_CP021802.1\|WP_010975825.1\|1316112_1317135_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021802.1\|WP_010975839.1\|1292560_1294342_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NZ_CP021802.1\|WP_088203854.1\|1312811_1314854_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021802.1\|WP_010975835.1\|1297209_1298451_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.37012e-67
NZ_CP021802.1\|WP_010975841.1\|1289290_1290268_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NZ_CP021802.1\|WP_088203851.1\|1295586_1296096_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.07664e-16
NZ_CP021802.1\|WP_088203855.1\|1314859_1316023_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021802.1\|WP_010975842.1\|1288670_1289294_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP021802.1\|WP_017263486.1\|1307893_1308676_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.24305e-66
NZ_CP021802.1\|WP_010975843.1\|1287580_1288471_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NZ_CP021802.1\|WP_017268478.1\|1306754_1307906_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.22141e-170
NZ_CP021802.1\|WP_017264421.1\|1319294_1320569_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.30219e-170

>NZ_CP021802.1|WP_088203852.1|1298531_1299449_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVIIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP021802.1|WP_010975835.1|1297209_1298451_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGFLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP021802.1|WP_080599897.1|1296258_1297185_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPERPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP021802.1|WP_088203851.1|1295586_1296096_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPVGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQECKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP021802.1|WP_080676568.1|1294841_1295384_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVVDDHCRVNQMIKCLRKEQNRLDVP
>NZ_CP021802.1|WP_010975839.1|1292560_1294342_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP021802.1|WP_014527132.1|1290264_1292490_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP021802.1|WP_010975841.1|1289290_1290268_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP021802.1|WP_010975842.1|1288670_1289294_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NZ_CP021802.1|WP_010975843.1|1287580_1288471_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NZ_CP021802.1|WP_080589970.1|1306271_1306664_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPVEVFAGSIRTRRPSCASVRAEHVAFFNRAGRRSRRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP021802.1|WP_017268478.1|1306754_1307906_+|sensor-histidine-kinase
MVVIAEPDLRPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NZ_CP021802.1|WP_017263486.1|1307893_1308676_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGEKVLDDTTTVPPVAMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP021802.1|WP_017263485.1|1308764_1309163_-|hypothetical-protein
MKRPTDRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPVRVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP021802.1|WP_088203853.1|1309288_1312627_-|hemolysin
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPSAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYEGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPRPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGDAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP021802.1|WP_088203854.1|1312811_1314854_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASAEGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALSVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQIAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP021802.1|WP_088203855.1|1314859_1316023_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEINGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLIIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALSMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP021802.1|WP_010975825.1|1316112_1317135_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP021802.1|WP_027990785.1|1317840_1319298_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP021802.1|WP_017264421.1|1319294_1320569_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAVFYAVTAAAEAGAEGGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085274-1085318	0	1.0
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151496-1151540	0	1.0
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373266-373310	0	1.0
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085279-1085323	0	1.0
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634337-634381	0	1.0
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302265-1302309	0	1.0
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895761-895805	0	1.0
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423128-1423172	0	1.0
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795069-795113	0	1.0
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054100-1054144	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656013-656057	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772894-772938	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292351-292395	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225853-1225897	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998536-998580	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651469-651513	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636463-636507	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233510-233554	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644528-644572	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558514-558558	1	0.978
NZ_CP021802_2	2.1\|1302265\|45\|NZ_CP021802\|CRISPRCasFinder	1302265-1302309	45	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658142-658186	1	0.978
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651262-651324	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085463-1085525	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636256-636318	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151685-1151747	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233303-233365	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644321-644383	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634130-634192	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302058-1302120	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895554-895616	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	773083-773145	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558307-558369	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292540-292602	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1422921-1422983	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373455-373517	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	794862-794924	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	657935-657997	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1226042-1226104	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998725-998787	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085468-1085530	3	0.952
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054289-1054351	4	0.937
NZ_CP021802_1	1.1\|1302058\|63\|NZ_CP021802\|CRISPRCasFinder	1302058-1302120	63	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656199-656261	4	0.937
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651643-651708	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085079-1085144	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1053905-1053970	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636637-636702	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151301-1151366	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233684-233749	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644702-644767	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634511-634576	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	655818-655883	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302439-1302504	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895935-896000	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772699-772764	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558688-558753	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292156-292221	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423302-1423367	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373071-373136	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795243-795308	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658316-658381	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225658-1225723	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998341-998406	6	0.909
NZ_CP021802_3	3.1\|1302439\|66\|NZ_CP021802\|CRISPRCasFinder	1302439-1302504	66	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085084-1085149	6	0.909

1. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

2. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

3. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

4. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

5. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

6. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

7. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

8. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

9. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

10. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

11. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

12. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

13. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

14. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

15. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

16. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

17. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

18. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

19. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

20. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

21. spacer 2.1|1302265|45|NZ_CP021802|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

22. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

23. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

24. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

25. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

26. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

27. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

28. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

29. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

30. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

31. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

32. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

33. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

34. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

35. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

36. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

37. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

38. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

39. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

40. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

41. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

42. spacer 1.1|1302058|63|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

43. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

44. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

45. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

46. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

47. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

48. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

49. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

50. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

51. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

52. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

53. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

54. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

55. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

56. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

57. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

58. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

59. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

60. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

61. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

62. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

63. spacer 3.1|1302439|66|NZ_CP021802|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

696360 : 705555

Burkholderia_virus(25.0%)

tail,terminase,portal,head,capsid,integrase

attL 694575:694591|attR 700119:700135

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
694575:694591	attL	NA	NA	NA	NA
WP_088203737.1\|696360_698193_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_088203739.1\|698607_699810_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	1.7e-49	34.3
WP_088203740.1\|699806_700106_+	hypothetical protein	NA	NA	NA	NA
WP_088203741.1\|700102_700513_+	gene transfer agent family protein	NA	NA	NA	NA
700119:700135	attR	NA	NA	NA	NA
WP_088203742.1\|700509_702057_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	5.4e-43	34.2
WP_088203743.1\|702060_702687_+	hypothetical protein	NA	NA	NA	NA
WP_088203744.1\|702683_703037_+	HNH endonuclease	Q38456	Bacillus_phage	9.4e-20	47.1
WP_088203745.1\|703033_703624_+	hypothetical protein	NA	NA	NA	NA
WP_020479440.1\|703631_703997_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_088203746.1\|703986_704424_+	HK97 gp10 family phage protein	B4UTQ0	Rhizobium_phage	2.8e-05	34.8
WP_088203747.1\|704420_704834_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_088203748.1\|704833_705151_+\|head	phage head closure protein	NA	NA	NA	NA
WP_088203749.1\|705147_705555_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA

DBSCAN-SWA_2

812258 : 868151

Sinorhizobium_phage(68.18%)

tail,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013844094.1\|812258_813029_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_003533284.1\|813167_814034_+	S49 family peptidase	A0A2I7REP4	Vibrio_phage	1.1e-08	27.4
WP_003533286.1\|814179_814371_+	hypothetical protein	NA	NA	NA	NA
WP_014529086.1\|814470_815433_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_010968863.1\|815433_815679_-	hypothetical protein	NA	NA	NA	NA
WP_011970797.1\|815703_816649_-\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_010968864.1\|816960_817509_+	LemA family protein	NA	NA	NA	NA
WP_010968865.1\|817628_819563_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_010968866.1\|819654_821820_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_010968867.1\|821879_822398_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_013844097.1\|822527_823010_-	hypothetical protein	NA	NA	NA	NA
WP_010968869.1\|823126_824398_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_010968870.1\|824524_826897_-	phosphodiesterase	G3MA91	Bacillus_virus	3.6e-14	29.9
WP_010968871.1\|826893_827934_-	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003533308.1\|828040_829237_-	MFS transporter	NA	NA	NA	NA
WP_003533310.1\|829349_830165_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010968872.1\|830535_831342_+	MipA/OmpV family protein	NA	NA	NA	NA
WP_010968873.1\|831414_832371_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_010968874.1\|832450_833017_-	hypothetical protein	NA	NA	NA	NA
WP_017265803.1\|833391_835701_+	DUF1217 domain-containing protein	NA	NA	NA	NA
WP_010968876.1\|835748_837191_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_010968877.1\|837238_838213_-	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	1.2e-35	35.9
WP_010968878.1\|838278_838872_-	hypothetical protein	NA	NA	NA	NA
WP_010968879.1\|839509_840754_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_010968880.1\|840756_841851_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_010968881.1\|841852_842878_-	glycoside hydrolase family 25 protein	NA	NA	NA	NA
WP_010968882.1\|843173_843587_+	BA14K family protein	NA	NA	NA	NA
WP_010968883.1\|844058_845048_-	transporter	NA	NA	NA	NA
WP_010968884.1\|845225_847007_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_010968885.1\|847016_847769_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_017265910.1\|847820_848060_-	hypothetical protein	NA	NA	NA	NA
WP_080567514.1\|848025_850149_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-06	56.1
WP_010968887.1\|850230_851478_-	RNA methyltransferase	A0A2K5B251	Erysipelothrix_phage	6.3e-18	24.7
WP_028004746.1\|852148_852616_+	hypothetical protein	NA	NA	NA	NA
WP_028004747.1\|852612_852939_+	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	1.2e-34	70.8
WP_028004748.1\|852941_853238_+	hypothetical protein	A0A291AUM3	Sinorhizobium_phage	4.6e-28	64.9
WP_017274986.1\|853239_853704_+	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	8.8e-50	66.2
WP_011975792.1\|853796_854207_+\|tail	tail protein	A0A291AUM5	Sinorhizobium_phage	3.7e-52	76.5
WP_028004749.1\|854220_854622_+	hypothetical protein	A0A291AUM7	Sinorhizobium_phage	3.4e-50	79.2
WP_086021768.1\|854618_854864_+\|tail	phage tail assembly chaperone	A0A291AUN4	Sinorhizobium_phage	3.9e-25	68.4
WP_088203764.1\|855242_857114_+\|tail	tail tape measure protein	A0A291AUM6	Sinorhizobium_phage	7.0e-223	69.6
WP_028004751.1\|857113_857764_+	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	4.3e-79	70.0
WP_028004752.1\|857760_858351_+	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	2.0e-75	72.1
WP_013843999.1\|858497_858770_-	hypothetical protein	NA	NA	NA	NA
WP_028004753.1\|858841_859246_+	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	1.9e-48	73.1
WP_028004754.1\|859252_862000_+\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	7.6e-258	61.4
WP_017274117.1\|862238_863753_+	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	3.9e-256	84.2
WP_017274118.1\|863764_865789_+\|tail	tail fiber domain-containing protein	A0A2L2R219	Sinorhizobium_phage	4.1e-51	30.9
WP_028004756.1\|866018_866222_-	hypothetical protein	NA	NA	NA	NA
WP_028004757.1\|866425_867394_+	chitinase	A0A076G6J8	Sinorhizobium_phage	2.5e-163	86.4
WP_028004758.1\|867504_867729_+	hypothetical protein	J7F8X5	Agrobacterium_phage	4.1e-13	60.3
WP_028004759.1\|867785_868151_+	hypothetical protein	A0A076GD39	Sinorhizobium_phage	3.7e-43	73.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP021803

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7497 : 65210

Bacillus_phage(22.22%)

integrase,transposase

attL 16479:16538|attR 49199:49398

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088204019.1\|7497_8616_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_088204020.1\|9797_10850_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_088204022.1\|11787_13431_+	MFS transporter	NA	NA	NA	NA
16479:16538	attL	NA	NA	NA	NA
WP_153497509.1\|16521_20832_+	AMP-binding protein	A0A2K9KZV5	Tupanvirus	2.9e-14	23.6
WP_088204024.1\|20785_24010_+	acyltransferase domain-containing protein	NA	NA	NA	NA
WP_088204025.1\|24401_25571_+	M20 family metallopeptidase	NA	NA	NA	NA
WP_088204026.1\|25567_26308_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_088204027.1\|26291_26765_+	RidA family protein	NA	NA	NA	NA
WP_088204028.1\|26768_27974_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_088204029.1\|28139_28610_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_088204030.1\|28812_29820_-\|integrase	site-specific integrase	A0A0K2CP59	Brevibacillus_phage	7.1e-12	25.4
WP_088204031.1\|29816_30731_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010967204.1\|30924_32127_+\|transposase	IS256-like element ISRm3 family transposase	A0A218MNI5	uncultured_virus	1.0e-41	43.3
WP_088204033.1\|33541_34423_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.7e-31	31.9
WP_088204034.1\|34430_35627_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_011970372.1\|36230_36794_+	UPF0149 family protein	NA	NA	NA	NA
WP_088204035.1\|37052_38171_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_088204036.1\|39998_41222_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_088204037.1\|41329_46030_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_088204039.1\|46145_47555_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_088204040.1\|48049_48418_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	1.0e-16	40.7
WP_088204020.1\|49966_51019_-\|transposase	IS110 family transposase	NA	NA	NA	NA
49199:49398	attR	NA	NA	NA	NA
WP_088204041.1\|53391_54141_-	LuxR family transcriptional regulator	A0A1I9KF49	Aeromonas_phage	1.9e-14	29.0
WP_088204043.1\|55288_56320_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_088204149.1\|56322_57387_+	uridylate kinase	NA	NA	NA	NA
WP_088204044.1\|57595_58768_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.1e-19	26.4
WP_088204045.1\|58760_59459_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.2e-30	33.8
WP_088204046.1\|59958_61293_+\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_014528618.1\|63836_65210_+\|transposase	ISNCY family transposase	Q4VFZ2	Porcine_endogenous_retrovirus	1.4e-05	27.7

DBSCAN-SWA_2

107364 : 155650

Bacillus_virus(15.38%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014531051.1\|107364_108402_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_003537129.1\|108836_109088_+	WGR domain-containing protein	NA	NA	NA	NA
WP_153497608.1\|109516_109831_+	hypothetical protein	NA	NA	NA	NA
WP_028005888.1\|109892_110618_-	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	1.1e-11	30.8
WP_014531048.1\|110769_112248_+	DUF1254 domain-containing protein	A0A1J0FA30	Only_Syngen_Nebraska_virus	2.6e-10	22.0
WP_127570099.1\|112337_112619_+	hypothetical protein	NA	NA	NA	NA
WP_014531047.1\|112672_113128_-\|transposase	transposase	NA	NA	NA	NA
WP_017265675.1\|113497_114106_-	hypothetical protein	NA	NA	NA	NA
WP_088204066.1\|115025_115718_-	stachydrine N-demethylase Stc3	NA	NA	NA	NA
WP_013845279.1\|118857_119307_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	7.2e-17	47.5
WP_088204067.1\|120999_122418_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_086018117.1\|122969_123527_-	NUDIX hydrolase	A0A2H4IB87	Erwinia_phage	3.1e-09	34.5
WP_086018104.1\|123589_123787_+	hypothetical protein	NA	NA	NA	NA
WP_003535606.1\|124047_124251_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_013845275.1\|124691_124880_+	hypothetical protein	NA	NA	NA	NA
WP_013845273.1\|125535_126057_+	hypothetical protein	NA	NA	NA	NA
WP_013845271.1\|126445_126685_-	hypothetical protein	J7F8X5	Agrobacterium_phage	8.6e-17	61.8
WP_014531029.1\|127943_128165_+	hypothetical protein	NA	NA	NA	NA
WP_041915217.1\|130664_130817_+	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	1.6e-08	62.8
WP_003532548.1\|130946_131270_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	3.6e-18	47.5
WP_015241580.1\|131642_132050_+	cytochrome P450	NA	NA	NA	NA
WP_003532552.1\|132027_132594_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_014531026.1\|132590_132761_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003532558.1\|132995_134051_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_013845267.1\|135120_135318_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_014528039.1\|135321_135501_+	thiazole biosynthesis family protein	NA	NA	NA	NA
WP_088204068.1\|135545_136647_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.0e-12	29.5
WP_088204069.1\|137035_138154_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_017267885.1\|138272_138650_+	thiazole synthase	NA	NA	NA	NA
WP_003532569.1\|138825_139302_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012881248.1\|139445_140465_+	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_014531014.1\|141246_141465_-	hypothetical protein	NA	NA	NA	NA
WP_127642796.1\|141467_141719_+	PAS domain-containing protein	NA	NA	NA	NA
WP_157719039.1\|141846_142128_+	PAS domain-containing protein	NA	NA	NA	NA
WP_088204070.1\|142179_143292_+	diguanylate cyclase	G3MA91	Bacillus_virus	2.5e-26	41.4
WP_088204071.1\|143436_145242_-	EAL domain-containing protein	G3MA91	Bacillus_virus	5.3e-18	33.9
WP_088204072.1\|146354_146945_-	NYN domain-containing protein	NA	NA	NA	NA
WP_088204073.1\|147073_147595_-\|protease	serine protease	NA	NA	NA	NA
WP_088204074.1\|147655_148396_-	hypothetical protein	NA	NA	NA	NA
WP_003532595.1\|148547_149324_-	hypothetical protein	NA	NA	NA	NA
WP_088204075.1\|150501_151266_-	response regulator transcription factor	NA	NA	NA	NA
WP_015241666.1\|152116_153319_+\|transposase	IS256-like element ISRm3 family transposase	A0A218MNI5	uncultured_virus	1.0e-41	43.3
WP_088204076.1\|153604_154570_+	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
WP_015061231.1\|154897_155650_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	9.2e-41	45.2

DBSCAN-SWA_3

174541 : 229184

Pseudomonas_phage(33.33%)

integrase,transposase

attL 208073:208091|attR 231359:231377

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088204085.1\|174541_175739_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	1.2e-74	53.5
WP_088204086.1\|176275_177892_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_088204087.1\|177898_178780_+	AAA family ATPase	NA	NA	NA	NA
WP_088204088.1\|178757_179636_+	hypothetical protein	NA	NA	NA	NA
WP_088204089.1\|179702_181052_-\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_003537730.1\|181337_181772_+	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	2.7e-24	47.4
WP_088204090.1\|182929_184579_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_088204091.1\|184645_185788_+	pectate lyase	A0A076FMJ8	Aureococcus_anophage	2.0e-15	32.4
WP_013845864.1\|186031_186781_+	carbonic anhydrase	NA	NA	NA	NA
WP_127570062.1\|186934_187198_-	hypothetical protein	NA	NA	NA	NA
WP_013851149.1\|188192_189605_+	PhoPQ-activated pathogenicity	NA	NA	NA	NA
WP_013851150.1\|190196_190628_+	hypothetical protein	NA	NA	NA	NA
WP_013851151.1\|190624_191998_+	Y4yA family PLP-dependent enzyme	NA	NA	NA	NA
WP_013851152.1\|191998_193009_+	cysteine synthase family protein	NA	NA	NA	NA
WP_088204092.1\|193005_194145_+	hypothetical protein	NA	NA	NA	NA
WP_088204093.1\|194141_196031_+	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA
WP_013851155.1\|196027_197254_+	MFS transporter	NA	NA	NA	NA
WP_013851156.1\|197250_198417_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_088204094.1\|198888_201030_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_088204095.1\|201531_204045_-	DNA helicase	NA	NA	NA	NA
WP_011970797.1\|204086_205033_-\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_088204096.1\|205109_206279_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_088204097.1\|206271_207219_-	aminotransferase	NA	NA	NA	NA
WP_013845644.1\|207597_207942_-	hypothetical protein	NA	NA	NA	NA
WP_088204098.1\|207941_209045_-\|transposase	IS5 family transposase	NA	NA	NA	NA
208073:208091	attL	NA	NA	NA	NA
WP_088203552.1\|209909_210673_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	9.4e-25	42.5
WP_088204100.1\|210991_211441_+	hypothetical protein	NA	NA	NA	NA
WP_127570237.1\|211451_212204_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157719041.1\|212724_214071_+	hypothetical protein	NA	NA	NA	NA
WP_088204103.1\|214072_216142_+	hypothetical protein	NA	NA	NA	NA
WP_088204104.1\|216138_217194_+	hypothetical protein	NA	NA	NA	NA
WP_088204105.1\|217377_219111_+	hypothetical protein	NA	NA	NA	NA
WP_088203450.1\|219603_220938_+\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_015241552.1\|221550_221871_+	hypothetical protein	NA	NA	NA	NA
WP_094183246.1\|221872_223540_-\|transposase	transposase	NA	NA	NA	NA
WP_088204106.1\|223680_225090_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-30	37.0
WP_086019130.1\|227177_227519_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_011970304.1\|227515_227917_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_088204152.1\|228008_229184_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
231359:231377	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP021801

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021801_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021801_1

1086275-1086384

Orphan

Consensus_repeat	Method
GCCGCGCGGCGGGACCGCCGCGATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021801_1

>merge|NZ_CP021801|1|1086275-1086384|CRISPRCasFinder
GCCGCGCGGCGGGACCGCCGCGATGACCTGATGGAACTGATCGGCGACCGCGGCGACCGGCGCGAGCGGCTCATGGACCTGATCGCCGCGCGGCGGGACCGCCGGGATGA

>NZ_CP021801|1|1|1086275-1086384|CRISPRCasFinder
GCCGCGCGGCGGGACCGCCGCGATGA	CCTGATGGAACTGATCGGCGACCGCGGCGACCGGCGCGAGCGGCTCATGGACCTGATC
GCCGCGCGGCGGGACCGCCGGGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021801.1\|WP_088203573.1\|1083637_1085398_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227903
NZ_CP021801.1\|WP_014528409.1\|1087782_1088772_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176233
NZ_CP021801.1\|WP_080567587.1\|1080869_1081274_-\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573
NZ_CP021801.1\|WP_014531840.1\|1069073_1069421_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021801.1\|WP_017274532.1\|1092663_1093488_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP021801.1\|WP_017272053.1\|1075842_1076196_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021801.1\|WP_014528410.1\|1086766_1087114_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021801.1\|WP_041169465.1\|1078523_1080608_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|306677
NZ_CP021801.1\|WP_088203575.1\|1089020_1089737_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021801.1\|WP_088203571.1\|1067314_1067980_-\|cytochrome-c3-family-protein	unknown	unknown	gnl\|CDD\|131216
NZ_CP021801.1\|WP_020479730.1\|1091625_1092543_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293840
NZ_CP021801.1\|WP_014989884.1\|1091254_1091596_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP021801.1\|WP_088203576.1\|1089786_1090977_+\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|223699
NZ_CP021801.1\|WP_014528401.1\|1096682_1097063_+\|response-regulator	unknown	unknown	gnl\|CDD\|381092
NZ_CP021801.1\|WP_014528417.1\|1071235_1071688_-\|DUF2721-domain-containing-protein	unknown	unknown	gnl\|CDD\|378544
NZ_CP021801.1\|WP_100219904.1\|1087154_1087319_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288799
NZ_CP021801.1\|WP_088203577.1\|1096043_1096679_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226932
NZ_CP021801.1\|WP_127570217.1\|1075014_1075521_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021801.1\|WP_080599833.1\|1082247_1082439_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021801.1\|WP_086024526.1\|1072339_1073559_-\|IS3-like-element-ISRm1-family-transposase	unknown	unknown	gnl\|CDD\|237792

Protein	Function_ID	Function_description	E-value
NZ_CP021801.1\|WP_088203573.1\|1083637_1085398_+\|hypothetical-protein	gnl\|CDD\|227903	COG5616, COG5616, Predicted integral membrane protein [Function unknown].	6.07103e-30
NZ_CP021801.1\|WP_014528409.1\|1087782_1088772_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176233	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.59654e-173
NZ_CP021801.1\|WP_080567587.1\|1080869_1081274_-\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	3.09033e-09
NZ_CP021801.1\|WP_017274532.1\|1092663_1093488_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.09328e-43
NZ_CP021801.1\|WP_014528401.1\|1096682_1097063_+\|response-regulator	gnl\|CDD\|381092	cd17537, REC_FixJ, phosphoacceptor receiver (REC) domain of FixJ family response regulators. FixJ family response regulators contain an N-terminal receiver domain (REC) and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. The Sinorhizobium meliloti two-component system FixL/FixJ regulates nitrogen fixation in response to oxygen during symbiosis. Under microaerobic conditions, the kinase FixL phosphorylates the response regulator FixJ resulting in the regulation of nitrogen fixation genes such as nifA and fixK. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.62241e-27
NZ_CP021801.1\|WP_086024526.1\|1072339_1073559_-\|IS3-like-element-ISRm1-family-transposase	gnl\|CDD\|237792	PRK14702, PRK14702, insertion element IS2 transposase InsD; Provisional.	1.18678e-86
NZ_CP021801.1\|WP_088203571.1\|1067314_1067980_-\|cytochrome-c3-family-protein	gnl\|CDD\|131216	TIGR02161, Cytochrome_c-type_protein_NapC, periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.	3.24261e-120
NZ_CP021801.1\|WP_020479730.1\|1091625_1092543_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	2.03538e-49
NZ_CP021801.1\|WP_014989884.1\|1091254_1091596_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	8.28336e-16
NZ_CP021801.1\|WP_041169465.1\|1078523_1080608_+\|HAMP-domain-containing-protein	gnl\|CDD\|306677	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain.	5.45774e-72
NZ_CP021801.1\|WP_100219904.1\|1087154_1087319_-\|hypothetical-protein	gnl\|CDD\|288799	pfam11972, HTH_13, HTH DNA binding domain. This is a helix-turn-helix DNA binding domain.	1.89908e-05
NZ_CP021801.1\|WP_088203577.1\|1096043_1096679_+\|response-regulator-transcription-factor	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	4.45408e-85
NZ_CP021801.1\|WP_088203576.1\|1089786_1090977_+\|PLP-dependent-transferase	gnl\|CDD\|223699	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].	3.69187e-129
NZ_CP021801.1\|WP_014528417.1\|1071235_1071688_-\|DUF2721-domain-containing-protein	gnl\|CDD\|378544	pfam11026, DUF2721, Protein of unknown function (DUF2721). This family is conserved in bacteria. The function is not known.	1.39673e-15

>NZ_CP021801.1|WP_088203573.1|1083637_1085398_+|hypothetical-protein
MVHADQQGVPVDPATALPTEAEVLAQLDRIRFSTEFDAPERARQFLAYVVGETIAGRADRIKAYSIATEVFGRDSSFDAQTDPAVRIEAARIRRALERYYLVEGHNDPLVINMPKGAYVPTFERRIKVHTEPDPGLFVSVRRNSPFGSSQQPWAWVAIAALAFALGSLAANALLRSITPAESEDMAGFRPNIPKLAVMPFEDLTGTPHSAMITRGFTDEVVDKIARFKEIIVVSREKLDGSPDQADAPAYALEGRVRLDGEKLRLAIRLVQRSDESVVWANNYDESLATHKIIALQEKAAAAVATAVAQPYGVVFQANAVRFTRSVPDDWEAYACTLAYYGYRSNLSPLTHSSVQECLQQATRQFPNYATAWALLSMTYIDELRFQYRLERSSPISLEHAVAAAARAVELDSQDVRALQAEMLTLFFRGEVDAALAVGARAFAINPNDTELAGEYGFRRALSGQWRSGCELVSQTVERNPGPVGYFEAALAICSYIESDYVAAERWARLADLRANPIYRVILLAILGKLGKEEQAKEEQNWLETNVPGFLENIRKEIALRIRRPEDQQHFIEGLREAGVTIPEDGA
>NZ_CP021801.1|WP_080599833.1|1082247_1082439_+|hypothetical-protein
MIHINGNGTGTWTIPKRKAPAQCAATNLLDVAAQLAGLAEDLKALAARRIEPIPTLAEPDDQP
>NZ_CP021801.1|WP_080567587.1|1080869_1081274_-|BA14K-family-protein
MKASTLAFAVLAAAIGMSPARAQTCIGICNGGTGGSTNHNLFIEREYRDFLQQRYPNYGSRYRGMRPDISIGPGATVGGPRPGVRQQFRLRQRRVIDANKHLRWCQERYLSYRLADDTFQPFEGARRPCNSPYN
>NZ_CP021801.1|WP_041169465.1|1078523_1080608_+|HAMP-domain-containing-protein
MAAKLFTILVLLGAIAVLVTGVLGYFRARDALEKAVFDQLTAARQTKTRQVEDYFRTIDAELRLLASSKMAVDATREFRIVVDQLDRAGAPPELRQKVGTWYTENFIPGITRVLGRKPVLADYLPVGAAPYYLQYHYIVANPHPAERRKLLDDAGDGSEYSRLHAMYHPMMRAAAATLGFFDFMIADPKSGRLIYTVEKEVDFTTSLQAGPYRHSNAAAAAARCAASPDRSAVCLEDFAPYAPSGGAPIAFMGAPVIDRGVVIGVLIAQLSNEEIDNVVTGGRRWRQEGFGDTGEAYLVGPDYLVRSGPRAFYEDRENYFAELKSVGAPGEEIAAIERYGTPVQHQRINTKATQAALAGVEGTGEIVGYRGVPTLASWGPLAIPGIKWGLVAKIDSAEAFAPIERLRQDLLVVGGLALLVVAATGAWLSRALLGPLRELTAGVRRFAAGDYRASVPVRTHDEIGQLCSAFNGMVEDLHQKNVVIENKNRENEQLLLNVLPAPIANRLRGGEEAIADGFAEVTVAFADLVGFTELTSEMPPHDVVTLLNELFTRFDAAAHDLGIEKIKTVGDAYMAVCGLPEPVANHAERMVRMAIRMVHITREHGMEHNASMKLRVGINTGPVVAGVIGTSKYIYDLWGDTVNLASRMESGGIPDSIQVTRSVYEKLKGQFAFEPRGAIEVKGKGKVEAWVLRL
>NZ_CP021801.1|WP_017272053.1|1075842_1076196_+|hypothetical-protein
MLMKRPAFSTAVSLSLLALVSSRVNLSHAAEPTFAILQGMCRNTKDPLQQGYCTGFIEAIAIRIARDGKNCAFLQDYIDHANADLALSDLIADLNPAEYSEKAFDAVEKFFYNKGCS
>NZ_CP021801.1|WP_127570217.1|1075014_1075521_+|hypothetical-protein
MYFETFLAECWKNGNRIGRHLLYDIKNRGYTGSRTNLERLLKVWREAKNIQPGEPPPDMDVSEPVRDPDTGHMISSVVAAALCIKPRGMLTDRQARKVNALKQGSTVFAIMRGLAMRFKGVLRSRNSEALAKWIDDAIETELTATCVSPAFCAGILMPSKMQSNSLGG
>NZ_CP021801.1|WP_086024526.1|1072339_1073559_-|IS3-like-element-ISRm1-family-transposase
MTSSNFKMEVLSGPERRRRWSTAEKLAIIHETYEADATVSIVARRHGIQPNQLFAWRKLASQGALTATAAEEEVVPASEYRALQAQVKELQRLLGKKTMESEILKEALEIAGKPKKTSVALALSSEGDFGMKSVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYRVMKLHNLLLVRHTGAVDNRLHEGQVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLVITAVENRFGRINMLSEPIEWLTDNGSCFIAKDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVAVNPTPDAETVMAQLPFWFEHYNNLHPHSALGYQSPREFISSQSQT
>NZ_CP021801.1|WP_014528417.1|1071235_1071688_-|DUF2721-domain-containing-protein
MNTPPIVTDLASVVQTSLAPVFLLAGTAGFVSIYTIRLGRVSDRLNEVADKGNQGKLFRMQLAYLRRRALALEVAVVLGVIAGICTGGAILNLLAGALAIGLRQENLFWFFGGAIVSLIGSLVAFLFELLIAGRNMLRQIRMDQIPTGQD
>NZ_CP021801.1|WP_014531840.1|1069073_1069421_+|hypothetical-protein
MIIYVAEISGRGIAAFDAANDIEAQAQLANRGLLRDLIVLQNEGRALWDGVAEIHVRMATPEETEIWQTSRAAVQSGEDSDDEGRHVFLVPVVDPSHDNFDDDDNPHHDDDRDGD
>NZ_CP021801.1|WP_088203571.1|1067314_1067980_-|cytochrome-c3-family-protein
MARIKRLLLWVWKILTTPAATLSLAFLTLGGFVGGVIFWGAFNTALELTNTEEFCVSCHEMRANVYEELTRTVHFSNRSGVRASCPDCHVPHEWTDKIARKMQASKEVWGKIFGTINTREKFLDHRLELAKHEWARLKANDSLECRNCHSSAAMDLSKQTQRAAEIHTRYLLPGKATCIDCHKGIAHELPNMQGVEPGWKLPPELEGETLPSASAIDDLKR
>NZ_CP021801.1|WP_014528410.1|1086766_1087114_+|hypothetical-protein
MNKFLLMTAGLLLMPLPALSQSAPDSGSRDPGSMQDREIEDLLRSITDEVSGGSGGPRRGAAFLLRSGDATVAVRCDPRESMKDCVDLTTSLLEKARSAMPTGGGAPGTAPPPRP
>NZ_CP021801.1|WP_100219904.1|1087154_1087319_-|hypothetical-protein
MLTDDTVAKTLDVTPQAARRIVLELGLREIVLVTVDDAASQVLRIVNTLQECFR
>NZ_CP021801.1|WP_014528409.1|1087782_1088772_-|zinc-dependent-alcohol-dehydrogenase-family-protein
MPTMRAAVVEAANGPFRVSDLEHPVPKSGEVLVRIKASGVNPLDTKIRAGAAAHARHQLPAVLGLDLAGIVEDVGGGVTRFSPGDEVYGMTGGVGGHQGSLAQYAAVDERLLAIRPSNLSMREAAALPLIFITAWEGLVDRVNARAGQTVLVLGAGGGVGHIAVQIAIALGADVYGVDSTSKGDYLRSLGATAIDYSSEEVESYVARHSGSKGFDVVYDTVGGAGLDTAFKAVARFGHVVSCLGWGTHALAPLSFKSATYSGVFTLIPLLTGEGREHHGDIMREATKLVEAGKVSPRLDPRTFTLETAANAHELIEHRKANGKLVIDVD
>NZ_CP021801.1|WP_088203575.1|1089020_1089737_+|hypothetical-protein
MNKLLDKVMVAHGSPSRWNDHQVVRAAALITGDLCGNGVSGTTRQITVYPHLARALVEPSGSPSCRSDLVANRLSIIREDGTVISEIEDVRTMPMNYDPKARTDKVFGAFLACCTVRTLLTTPFLLAMKGVEVNELVPWNEDGDRWRVLRAEFPPGFDTAARVHDFFFGGDFLLRRHDYHVDGDTGITITELVSDYVDNHGIRMPRKLRGYRRCSDLNPDLARVLISIDISTLEFSAT
>NZ_CP021801.1|WP_088203576.1|1089786_1090977_+|PLP-dependent-transferase
MKDLTRCVVTPKVDTEGFVALGAGVYRASTIVFENAEAYANRGKRGPDGYSYGLYGTPTTRTLEAKLTVLEQGVRTFLLPSGQAANAIAMLPFLRAGDGVLLADSVYPPVRDFANTDLARFGVEVGYYDPADPSDLEARVNDRTKIVWCESPGSTTMEVQDLPRIADIAHRYGALLGCDNTWATPLNYKPLSLGADIVTEGLTKYISGHSDVLMGSLTVRDEQLTAPIRSTLGRLGICVSPDDASLVLRGLETLGVRMRHASEGALQLISRIQAADIVDRVLHPALPTSPGHSIWKRDFLGSSGVFGIVFKEGLSRHVAPSLDVLKTFAIGASWGGTRSLIAPMPVKAYRSVTQWDGDDLILRLSVGLEDHQDLVEDVDALLKEISARRSAWTIPR
>NZ_CP021801.1|WP_014989884.1|1091254_1091596_-|carboxymuconolactone-decarboxylase-family-protein
MSMIDWNSYHDQVLAGVGELASLNPDVIRGYQAIGGAARKSNLLGSKVNELIALAAAVSLRCDGCIVVHTDAALKAGATREEIAEALGTAIGVNAGAGLVYSTRVMDAVKSKS
>NZ_CP021801.1|WP_020479730.1|1091625_1092543_-|MBL-fold-metallo-hydrolase
MAASTFAVSGGWLSPRQAFAKAQGIVDMIRDEAAKAPIKVHEVRAGVAILEGSGGNIAVLTGEDGKLLVDGGITASRLRILDALAGLGKQPVMHLINTHWHFDHTDGNEWLNAEGAVILAHENTKKRLMTIQRVDDWDFEFPRPPLAAVPSETVGDETSLKLNKSTLMLKHHPNAHTDGDISVTFREANIVHTGDLYWNGIYPFIDYSTGGGIDGKIRAVEEILSRVTDETIVIPGHGQPLSKKSELSDYRTMLVDIRGNVARLKAEGKPIDEVIAAKPTEQFDAKWGQFVIGPEFFTRLVYHGV
>NZ_CP021801.1|WP_017274532.1|1092663_1093488_-|alpha/beta-hydrolase
MGTITTRDGTQIFYKDWGKGQPVVFHHGWPLSADDWDNQMLFFLGKGYRVIAHDRRGHGRSTQTATGNDMDTYAADVAELAEALDLRDAIHVGHSTGGGEVTRYVAQHGKGRVAKAVIISAIPPVMLKSDSNPGGLPIEVFDDLRAQLAANRAQFYLDVPTGPFYGFNREDAKVSPGLIQNWWRQGMIGGAIAHYECIKVFSETDFTQDLKKIDVPVLVMHGDDDQIVPIADAALLSIKLLKHGTLKVYKGLPHGMCSTHPDIINPDLLAFFQA
>NZ_CP021801.1|WP_088203577.1|1096043_1096679_+|response-regulator-transcription-factor
MSHGDHAVFVIDDDKRVRDGLSELLESRGIGVTTFASAREYLKAPKPENPSCLVLDVRLPDIDGFELQARLANEPHPPIVFITGHGDIPMTVHAMKLGAVDFLAKPFRDHELLAAIQTALERDREARRDRSVLNELQGRLNRLSARERDVLPLVVSGLMNKQGAAELGISEITFQIHRGNLMRKMHADSLADLVRIATKLGIPITHSRHGN
>NZ_CP021801.1|WP_014528401.1|1096682_1097063_+|response-regulator
MLAQDSHTFAIVDDDKRVLDGLRELLESVGYVVRTYRSPRSFLSTEDLSTCHCVITDIRMPSMDGFELEQAVRSREPAMPMILMTGRNDIDDLGFPGADDRRVFMRKPLNSQVLLQAITRLLAFRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	709941-709998	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	618048-618105	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	534472-534529	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	320258-320315	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	295298-295355	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	1180665-1180722	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1086301-1086358	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1186250-1186307	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	275823-275880	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	7342-7399	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	819905-819962	0	1.0
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	347456-347513	1	0.983
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	403311-403368	1	0.983
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	347117-347174	1	0.983
NZ_CP021801_1	1.1\|1086301\|58\|NZ_CP021801\|CRISPRCasFinder	1086301-1086358	58	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	373772-373829	1	0.983

1. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

2. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

3. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

4. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

5. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

6. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

7. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

8. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

9. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

10. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

11. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

12. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgaacggctcatggacctgatc	Protospacer
***************************************.******************

13. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggtgaccggcgcgagcggctcatggacctgatc	Protospacer
***************************.******************************

14. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgaacggctcatggacctgatc	Protospacer
***************************************.******************

15. spacer 1.1|1086301|58|NZ_CP021801|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 1, identity: 0.983

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgaacggctcatggacctgatc	Protospacer
***************************************.******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

208984 : 277821

Stx2-converting_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011970797.1\|208984_209930_+\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_014531962.1\|210091_210526_+	hypothetical protein	NA	NA	NA	NA
WP_014989757.1\|210736_211534_+	hypothetical protein	NA	NA	NA	NA
WP_088203432.1\|212113_212860_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_014989759.1\|213334_213808_+	RidA family protein	NA	NA	NA	NA
WP_014989760.1\|213832_214588_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.1e-33	38.7
WP_003526797.1\|214602_215271_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_088203433.1\|215281_215932_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_088203434.1\|215970_216816_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_088203435.1\|216988_219070_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_014528848.1\|219093_220731_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_088203436.1\|220804_222010_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_014989765.1\|222088_222994_+	5-dehydro-4-deoxyglucarate dehydratase	NA	NA	NA	NA
WP_088203437.1\|223078_224512_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_088203438.1\|225634_226564_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014528843.1\|226730_227786_+	DUF4392 domain-containing protein	NA	NA	NA	NA
WP_014528842.1\|227782_228757_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_088203439.1\|228828_229302_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_088203440.1\|229321_230830_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_014528839.1\|230968_231361_+	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_088203637.1\|231743_232481_+	hypothetical protein	NA	NA	NA	NA
WP_088203442.1\|233092_234124_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_088203443.1\|235497_240474_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_088203444.1\|240524_241151_-	porin family protein	NA	NA	NA	NA
WP_088203445.1\|241354_242395_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014531845.1\|242657_243053_+	IS66 family insertion sequence hypothetical protein	A0A1B0YZU7	Pseudomonas_phage	1.1e-05	56.8
WP_014531844.1\|243049_243397_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.0e-39	64.5
WP_088199240.1\|243442_245077_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.4e-103	41.9
WP_088203638.1\|245131_245368_+	hypothetical protein	NA	NA	NA	NA
WP_088203446.1\|246081_246702_+	hypothetical protein	NA	NA	NA	NA
WP_010970069.1\|247674_249009_-\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_013845060.1\|249871_250264_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_013845059.1\|250285_251065_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_013845056.1\|251857_252961_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_013845055.1\|253044_253524_+	cupin domain-containing protein	NA	NA	NA	NA
WP_014531960.1\|253677_254235_+	hypothetical protein	NA	NA	NA	NA
WP_014531959.1\|254350_256240_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_088203639.1\|257542_259411_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
WP_015008426.1\|262423_262810_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_003537853.1\|262806_263151_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_088203448.1\|263226_264846_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.9e-77	35.4
WP_014531948.1\|265912_266848_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_014531947.1\|266844_267645_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_014531946.1\|267682_268144_-	membrane protein	NA	NA	NA	NA
WP_014531945.1\|268252_269230_-	alpha/beta hydrolase	A0A0M4S5M2	Mycobacterium_phage	1.5e-14	31.8
WP_014531944.1\|269340_269889_-	transporter	NA	NA	NA	NA
WP_088203449.1\|269985_272673_-	transcriptional regulator	NA	NA	NA	NA
WP_014531941.1\|272919_273201_+	hypothetical protein	NA	NA	NA	NA
WP_014531940.1\|273368_274166_+	hypothetical protein	NA	NA	NA	NA
WP_127570190.1\|274712_275942_-	sulfite oxidase	NA	NA	NA	NA
WP_088203450.1\|276486_277821_-\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021800

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021802

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP021803

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP021801

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection