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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021906 Staphylococcus aureus strain Seattle 1945 isolate G477 plasmid pG477, complete sequence 0 crisprs csa3 0 0 3 0
NZ_CP021905 Staphylococcus aureus strain Seattle 1945 isolate G477 chromosome, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,WYL 7 0 10 0

Results visualization

1. NZ_CP021906
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 7917 8 Staphylococcus_phage(66.67%) transposase NA
DBSCAN-SWA_2 10926 : 11553 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_3 22095 : 24982 2 Enterobacteria_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP021905
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_1 688765-688864 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_2 776497-776581 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_3 834868-834947 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_4 883990-884075 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_5 1942139-1942266 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_6 1976303-1976385 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_7 1987097-1987400 Orphan NA
5 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_8 2181164-2181253 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_9 2200178-2200379 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021905_10 2258787-2258912 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP021905_2 2.1|776523|33|NZ_CP021905|CRISPRCasFinder 776523-776555 33 NZ_CP021905.1 1023189-1023221 1 0.97
NZ_CP021905_2 2.1|776523|33|NZ_CP021905|CRISPRCasFinder 776523-776555 33 NZ_CP021905.1 2331445-2331477 1 0.97
NZ_CP021905_6 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder 1976330-1976358 29 NZ_CP021905.1 1976561-1976589 1 0.966
NZ_CP021905_7 7.2|1987175|36|NZ_CP021905|CRT 1987175-1987210 36 NZ_CP021905.1 1987061-1987096 1 0.972
NZ_CP021905_4 4.1|884020|26|NZ_CP021905|CRISPRCasFinder 884020-884045 26 NZ_CP021905.1 2076345-2076370 2 0.923
NZ_CP021905_4 4.1|884020|26|NZ_CP021905|CRISPRCasFinder 884020-884045 26 NZ_CP021905.1 2136430-2136455 2 0.923
NZ_CP021905_6 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder 1976330-1976358 29 NZ_CP021905.1 688677-688705 2 0.931
NZ_CP021905_6 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder 1976330-1976358 29 NZ_CP021905.1 1023235-1023263 2 0.931
NZ_CP021905_6 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder 1976330-1976358 29 NZ_CP021905.1 1049470-1049498 2 0.931
NZ_CP021905_6 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder 1976330-1976358 29 NZ_CP021905.1 1650785-1650813 2 0.931
NZ_CP021905_7 7.1|1987116|40|NZ_CP021905|CRT 1987116-1987155 40 NZ_CP021905.1 789788-789827 2 0.95
NZ_CP021905_7 7.2|1987175|36|NZ_CP021905|CRT 1987175-1987210 36 NZ_CP021905.1 256626-256661 2 0.944
NZ_CP021905_7 7.2|1987175|36|NZ_CP021905|CRT 1987175-1987210 36 NZ_CP021905.1 334856-334891 2 0.944
NZ_CP021905_7 7.2|1987175|36|NZ_CP021905|CRT 1987175-1987210 36 NZ_CP021905.1 743356-743391 2 0.944
NZ_CP021905_7 7.2|1987175|36|NZ_CP021905|CRT 1987175-1987210 36 NZ_CP021905.1 776562-776597 2 0.944
NZ_CP021905_7 7.2|1987175|36|NZ_CP021905|CRT 1987175-1987210 36 NZ_CP021905.1 1049405-1049440 2 0.944
NZ_CP021905_7 7.2|1987175|36|NZ_CP021905|CRT 1987175-1987210 36 NZ_CP021905.1 1770682-1770717 2 0.944
NZ_CP021905_7 7.2|1987175|36|NZ_CP021905|CRT 1987175-1987210 36 NZ_CP021905.1 2297095-2297130 2 0.944
NZ_CP021905_7 7.2|1987175|36|NZ_CP021905|CRT 1987175-1987210 36 NZ_CP021905.1 2437339-2437374 2 0.944
NZ_CP021905_7 7.3|1987230|39|NZ_CP021905|CRT 1987230-1987268 39 NZ_CP021905.1 789788-789826 2 0.949
NZ_CP021905_7 7.4|1987288|36|NZ_CP021905|CRT 1987288-1987323 36 NZ_CP021905.1 256627-256662 2 0.944
NZ_CP021905_7 7.4|1987288|36|NZ_CP021905|CRT 1987288-1987323 36 NZ_CP021905.1 334857-334892 2 0.944
NZ_CP021905_7 7.4|1987288|36|NZ_CP021905|CRT 1987288-1987323 36 NZ_CP021905.1 743357-743392 2 0.944
NZ_CP021905_7 7.4|1987288|36|NZ_CP021905|CRT 1987288-1987323 36 NZ_CP021905.1 776561-776596 2 0.944
NZ_CP021905_7 7.4|1987288|36|NZ_CP021905|CRT 1987288-1987323 36 NZ_CP021905.1 1049404-1049439 2 0.944
NZ_CP021905_7 7.4|1987288|36|NZ_CP021905|CRT 1987288-1987323 36 NZ_CP021905.1 1770683-1770718 2 0.944
NZ_CP021905_7 7.4|1987288|36|NZ_CP021905|CRT 1987288-1987323 36 NZ_CP021905.1 2297094-2297129 2 0.944
NZ_CP021905_7 7.4|1987288|36|NZ_CP021905|CRT 1987288-1987323 36 NZ_CP021905.1 2437340-2437375 2 0.944

1. spacer 2.1|776523|33|NZ_CP021905|CRISPRCasFinder matches to position: 1023189-1023221, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctgtgttggggccca	Protospacer
******************** ************

2. spacer 2.1|776523|33|NZ_CP021905|CRISPRCasFinder matches to position: 2331445-2331477, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttgggaccca	Protospacer
****************************.****

3. spacer 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder matches to position: 1976561-1976589, mismatch: 1, identity: 0.966

cattatcgtaagctgactttttgtcagct	CRISPR spacer
cattatcgtaagctgacttttcgtcagct	Protospacer
*********************.*******

4. spacer 7.2|1987175|36|NZ_CP021905|CRT matches to position: 1987061-1987096, mismatch: 1, identity: 0.972

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttacattgtctgtagaatttcttttcaaaattc	Protospacer
*****.******************************

5. spacer 4.1|884020|26|NZ_CP021905|CRISPRCasFinder matches to position: 2076345-2076370, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cgcggccccaacacagaagctggcgg	Protospacer
** ********************.**

6. spacer 4.1|884020|26|NZ_CP021905|CRISPRCasFinder matches to position: 2136430-2136455, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
***************.*******.**

7. spacer 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder matches to position: 688677-688705, mismatch: 2, identity: 0.931

cattatcgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
******.**************.*******

8. spacer 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder matches to position: 1023235-1023263, mismatch: 2, identity: 0.931

cattatcgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
******.**************.*******

9. spacer 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder matches to position: 1049470-1049498, mismatch: 2, identity: 0.931

cattatcgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
******.**************.*******

10. spacer 6.1|1976330|29|NZ_CP021905|CRISPRCasFinder matches to position: 1650785-1650813, mismatch: 2, identity: 0.931

cattatcgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
******.**************.*******

11. spacer 7.1|1987116|40|NZ_CP021905|CRT matches to position: 789788-789827, mismatch: 2, identity: 0.95

cccaacttgcacattattgtaagctgacagaaagtcagct	CRISPR spacer
cccaacttgcacattattgtaagctggcggaaagtcagct	Protospacer
**************************.*.***********

12. spacer 7.2|1987175|36|NZ_CP021905|CRT matches to position: 256626-256661, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaattc	Protospacer
***********.*****************.******

13. spacer 7.2|1987175|36|NZ_CP021905|CRT matches to position: 334856-334891, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtttgtagaatttcttttcgaaattc	Protospacer
************.****************.******

14. spacer 7.2|1987175|36|NZ_CP021905|CRT matches to position: 743356-743391, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtttgtagaatttcttttcgaaattc	Protospacer
************.****************.******

15. spacer 7.2|1987175|36|NZ_CP021905|CRT matches to position: 776562-776597, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaattc	Protospacer
***********.*****************.******

16. spacer 7.2|1987175|36|NZ_CP021905|CRT matches to position: 1049405-1049440, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaattc	Protospacer
***********.*****************.******

17. spacer 7.2|1987175|36|NZ_CP021905|CRT matches to position: 1770682-1770717, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaattc	Protospacer
****************************..******

18. spacer 7.2|1987175|36|NZ_CP021905|CRT matches to position: 2297095-2297130, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaattc	Protospacer
****************************..******

19. spacer 7.2|1987175|36|NZ_CP021905|CRT matches to position: 2437339-2437374, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaattc	Protospacer
****************************..******

20. spacer 7.3|1987230|39|NZ_CP021905|CRT matches to position: 789788-789826, mismatch: 2, identity: 0.949

cccaacttgcacattattgtaagctgacagaaagtcagc	CRISPR spacer
cccaacttgcacattattgtaagctggcggaaagtcagc	Protospacer
**************************.*.**********

21. spacer 7.4|1987288|36|NZ_CP021905|CRT matches to position: 256627-256662, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgcctgtagaatttcttttcgaaatt	Protospacer
************.************.**********

22. spacer 7.4|1987288|36|NZ_CP021905|CRT matches to position: 334857-334892, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtttgtagaatttcttttcgaaatt	Protospacer
*************.***********.**********

23. spacer 7.4|1987288|36|NZ_CP021905|CRT matches to position: 743357-743392, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtttgtagaatttcttttcgaaatt	Protospacer
*************.***********.**********

24. spacer 7.4|1987288|36|NZ_CP021905|CRT matches to position: 776561-776596, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgcctgtagaatttcttttcgaaatt	Protospacer
************.************.**********

25. spacer 7.4|1987288|36|NZ_CP021905|CRT matches to position: 1049404-1049439, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgcctgtagaatttcttttcgaaatt	Protospacer
************.************.**********

26. spacer 7.4|1987288|36|NZ_CP021905|CRT matches to position: 1770683-1770718, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtctgtagaatttctttttgaaatt	Protospacer
*************************.***.******

27. spacer 7.4|1987288|36|NZ_CP021905|CRT matches to position: 2297094-2297129, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtctgtagaatttctttttgaaatt	Protospacer
*************************.***.******

28. spacer 7.4|1987288|36|NZ_CP021905|CRT matches to position: 2437340-2437375, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtctgtagaatttctttttgaaatt	Protospacer
*************************.***.******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 358367 : 376604 27 Staphylococcus_phage(90.91%) coat,terminase,integrase attL 359903:359920|attR 374793:374810
DBSCAN-SWA_2 721740 : 729559 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 741531 : 755669 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 925603 : 974427 43 Bacillus_virus(22.22%) holin,transposase,tRNA,protease NA
DBSCAN-SWA_5 1024717 : 1033190 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1481031 : 1564560 106 Staphylococcus_phage(82.28%) tRNA,protease,head,tail,portal,integrase,holin,terminase,capsid attL 1516936:1516964|attR 1558932:1558960
DBSCAN-SWA_7 1622403 : 1630715 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_8 1700139 : 1709182 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 1832360 : 1901257 64 Staphylococcus_phage(93.02%) tRNA,protease NA
DBSCAN-SWA_10 2042241 : 2056391 21 Staphylococcus_phage(68.42%) coat,terminase,integrase attL 2039433:2039452|attR 2054413:2054432
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage