CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP021938	Escherichia coli strain AR_0055 plasmid unitig_4, complete sequence	0 crisprs	DEDDh	0	0
NZ_CP021935	Escherichia coli strain AR_0055 chromosome, complete genome	2 crisprs	c2c9_V-U4,DEDDh,cas3,csa3,WYL,RT,DinG	1	11
NZ_CP021937	Escherichia coli strain AR_0055 plasmid unitig_3j3rc_linear, complete sequence	0 crisprs	NA	0	3
NZ_CP021936	Escherichia coli strain AR_0055 plasmid unitig_2, complete sequence	0 crisprs	DEDDh	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021935_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021935_1

3934787-3934928

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021935_1

>merge|NZ_CP021935|1|3934787-3934928|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAGAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGCGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

>NZ_CP021935|1|1|3934787-3934928|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	AAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGC
GCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021935.1\|WP_001313663.1\|3931511_3931901_+\|succinate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
NZ_CP021935.1\|WP_000025458.1\|3940394_3941264_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP021935.1\|WP_001235263.1\|3934023_3934740_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NZ_CP021935.1\|WP_000399432.1\|3925449_3926646_+\|UxaA-family-hydrolase	unknown	unknown	gnl\|CDD\|377287
NZ_CP021935.1\|WP_000648957.1\|3944192_3946826_+\|mannosylglycerate-hydrolase	unknown	unknown	gnl\|CDD\|182093
NZ_CP021935.1\|WP_001048602.1\|3939228_3940395_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP021935.1\|WP_000126143.1\|3928162_3929473_+\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP021935.1\|WP_000735581.1\|3926673_3927642_+\|C4-dicarboxylate-ABC-transporter	unknown	unknown	gnl\|CDD\|270387
NZ_CP021935.1\|WP_000568275.1\|3951343_3952483_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NZ_CP021935.1\|WP_000725054.1\|3947023_3948217_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP021935.1\|WP_001237779.1\|3927701_3928163_+\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NZ_CP021935.1\|WP_000254365.1\|3931894_3932242_+\|succinate-dehydrogenase-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|181901
NZ_CP021935.1\|WP_000509910.1\|3941367_3942090_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182065
NZ_CP021935.1\|WP_001305582.1\|3931008_3931116_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021935.1\|WP_000884361.1\|3949759_3951328_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052
NZ_CP021935.1\|WP_000775540.1\|3932241_3934008_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
NZ_CP021935.1\|WP_001181475.1\|3935101_3937903_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP021935.1\|WP_001531490.1\|3942258_3944175_+\|PTS-2-O-a-mannosyl-D-glycerate-transporter-subunit-IIABC	unknown	unknown	gnl\|CDD\|182066
NZ_CP021935.1\|WP_000099866.1\|3937917_3939135_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP021935.1\|WP_000785832.1\|3929519_3930803_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164

Protein	Function_ID	Function_description	E-value
NZ_CP021935.1\|WP_001313663.1\|3931511_3931901_+\|succinate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	6.3386e-83
NZ_CP021935.1\|WP_000025458.1\|3940394_3941264_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP021935.1\|WP_001235263.1\|3934023_3934740_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	3.48257e-167
NZ_CP021935.1\|WP_000399432.1\|3925449_3926646_+\|UxaA-family-hydrolase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	5.6924e-134
NZ_CP021935.1\|WP_000648957.1\|3944192_3946826_+\|mannosylglycerate-hydrolase	gnl\|CDD\|182093	PRK09819, PRK09819, mannosylglycerate hydrolase.	0
NZ_CP021935.1\|WP_001048602.1\|3939228_3940395_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP021935.1\|WP_000126143.1\|3928162_3929473_+\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	2.11617e-118
NZ_CP021935.1\|WP_000735581.1\|3926673_3927642_+\|C4-dicarboxylate-ABC-transporter	gnl\|CDD\|270387	cd13669, PBP2_TRAP_TM0322_like, Periplasmic component of TRAP-type C4-dicarboxylate transport system TM0322 from Thermotoga maritima and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the hyperthermophilic bacterium Thermotoga maritima TRAP-type C4-dicarboxylate transport system TM0322 and its closely related proteins. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.46494e-145
NZ_CP021935.1\|WP_000568275.1\|3951343_3952483_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
NZ_CP021935.1\|WP_000725054.1\|3947023_3948217_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.01578e-17
NZ_CP021935.1\|WP_001237779.1\|3927701_3928163_+\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	2.66483e-21
NZ_CP021935.1\|WP_000884361.1\|3949759_3951328_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
NZ_CP021935.1\|WP_000509910.1\|3941367_3942090_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|182065	PRK09764, PRK09764, GntR family transcriptional regulator.	1.54929e-163
NZ_CP021935.1\|WP_000254365.1\|3931894_3932242_+\|succinate-dehydrogenase-membrane-anchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	5.54037e-58
NZ_CP021935.1\|WP_000775540.1\|3932241_3934008_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP021935.1\|WP_001181475.1\|3935101_3937903_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP021935.1\|WP_001531490.1\|3942258_3944175_+\|PTS-2-O-a-mannosyl-D-glycerate-transporter-subunit-IIABC	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	0
NZ_CP021935.1\|WP_000099866.1\|3937917_3939135_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP021935.1\|WP_000785832.1\|3929519_3930803_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0

>NZ_CP021935.1|WP_001235263.1|3934023_3934740_+|succinate-dehydrogenase-iron-sulfur-subunit
MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>NZ_CP021935.1|WP_000775540.1|3932241_3934008_+|succinate-dehydrogenase-flavoprotein-subunit
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>NZ_CP021935.1|WP_000254365.1|3931894_3932242_+|succinate-dehydrogenase-membrane-anchor-subunit
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>NZ_CP021935.1|WP_001313663.1|3931511_3931901_+|succinate-dehydrogenase-cytochrome-b556-subunit
MIRNVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
>NZ_CP021935.1|WP_001305582.1|3931008_3931116_-|hypothetical-protein
MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV
>NZ_CP021935.1|WP_000785832.1|3929519_3930803_-|citrate-(Si)-synthase
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYAQRDFKSDIKK
>NZ_CP021935.1|WP_000126143.1|3928162_3929473_+|TRAP-transporter-large-permease
MTALSELLAGSWLDNWLMIIPLMFVCLFINMPVWLAMFCGILTYFLCYSNVPLMVAIQRLIATTQTPSLLAIPFFILLGTLMSYTGIAARILQIANVLIGRMRGGLGGANILVSTMMGGVSASNLADAAMLSRMMVPEMEQKGYSRGFAAAITASGSLITPIIPPGIALILYGLVADVSIGSMFMAGILPGLLCSAMLIVTVWLVAIRRGLKPSSEHWPKPKEVSVALVQAWPALFLIVAVIGGIRANIFTPTEAGAVAVLLVMFIGFVIYRELKISHVFTALSETARSTASVMLIIMASAALGWIFSLERAGITVAEFVTSLTDNKYVFLLIINLLLLVLGMFLEGSAILLILVPLLKPVVAHFGIDPVHFGIIMILNLSLGTLSPPVGTVMLLVCNTVQVSVGQFMREAVPLLISLILLLLVITYIPAISLLLV
>NZ_CP021935.1|WP_001237779.1|3927701_3928163_+|TRAP-transporter-small-permease
MRLLGKMIEVAAVLTLFILVIMTIAAVIMRYCFHMPLQWTEEVSGLLMIWVVMFGAVVAERDNTHLSIPFLADALTSRGQRILAFLVSLMSIILLVVMAWSAWKLAAGTAFKTTQILKISWFWIDIAVTVGAIGVACFTALQLIKKTPRKEGE
>NZ_CP021935.1|WP_000735581.1|3926673_3927642_+|C4-dicarboxylate-ABC-transporter
MKKLLTPLLFLLALFSPMLNAAPVTIKIAYESNPGEPADTVVKHWAELVKKKSNGDIVFELYPSSQLGSKQDITEQALMGMNIITISDVGFLTDYDADLGILFGPYLTEDPQKLFAIYASDWFKQKEQKLREKGVHIVMSNYLYGTRQIIAKKPIRTPEDLKGMKIRVPNNVMQIKAIEAMGATPTPMPLGDVYPALTQGMIDGVENPVSVLYGQKLHEQAKYLSMVNYLTNTSLWLGGEAFFSTLTPAQLDIIHQTAYEAGLYSQKITTEQDATMLKTMQEQGVEIIYPDVAPFKEKALKVYQQFPEWTPGLYDTIQQQLK
>NZ_CP021935.1|WP_000399432.1|3925449_3926646_+|UxaA-family-hydrolase
MEGYVRQNGRPGIRNTVQVIFMVECASHVAKKIAEGFPCHDVQYFGFSGCYPSDYGYRLVKNLATHSNVGGVLIISLGCENFDRRRLEQEVRESGRPCHTLVIQENKGTTNTITLGKQLVAEMLEQLADTPRCILNWSDLVVGTICGGSDGTSGITGNPAVGRAFDQLLEKGATCIFEESGELLGCEQHMMSRAASSQARDAIEVAMTKAERYYSLMGLGSFSNGNAEGGLTTQEEKSLGAYTKSGDALIAGVILPTQQTPFPGLWLMDVVPDGEPRFGYPNINDSSEALELIASGCHMVLFTTGRGSVIGSVIAPIIKVCNNPQTWEHLSDDMDVNAGRVISEGATLDDIADDIMQVIEHVANGQYCAAERLEHQEFVLTYKAFDYSKSAVCRADPR
>NZ_CP021935.1|WP_001181475.1|3935101_3937903_+|2-oxoglutarate-dehydrogenase-E1-component
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAISEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>NZ_CP021935.1|WP_000099866.1|3937917_3939135_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSSVDILVPDLPESVADATVATWHKKPGDVVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>NZ_CP021935.1|WP_001048602.1|3939228_3940395_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK
>NZ_CP021935.1|WP_000025458.1|3940394_3941264_+|succinate--CoA-ligase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
>NZ_CP021935.1|WP_000509910.1|3941367_3942090_-|GntR-family-transcriptional-regulator
MGHKPLYRQIADRIREQITCGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVETHSEVLIFEVIPADNFLQQQLQISEQDRVWHVKRVRYRKQKPVALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGQVFEYSRNAFNTDDYKFTLIAQRKSPR
>NZ_CP021935.1|WP_001531490.1|3942258_3944175_+|PTS-2-O-a-mannosyl-D-glycerate-transporter-subunit-IIABC
MNLTTLTHRDALCLNVRFTSREEAIHALTQRLAALGKISSTEQFLEEVYCRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTTHMKLLTALTTRLADDELRARIQSATTPDELLSALDDKGDAQHTASFSYAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNIYVEKQGANGIEERLTAEQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGGMLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGNNALLLGAILGFMCSFDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRHHAVKHGNYLTDGVMP
>NZ_CP021935.1|WP_000648957.1|3944192_3946826_+|mannosylglycerate-hydrolase
MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQDNEYKYYVLDGQTAILEDYFAVKPENKDRVKKLVEGGKLIIGPWYTQTDTTIVSAESIVRNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQSSDGSEVTAQVLPLGYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMEKLREIYPQRKFVMSRFEEVFEQIEAQRESLAILKGEFIDGKYMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFDYHHGLLEKMWKEILKNHAHDSIGCCCSDKVHREIVARFELAEDMADNLIRFYMRKIADNMPQSDADKLVLFNLMPWPREEVINTTVRLRGSQFNLRDGRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQISQIVPSMGYRTLYIEANQLGNVVTPKSKTEGILENAFWQIALNEDGSLRLVDKDSGVRYDRVFQIEEGSDDGDEYDYSPAKEEWAITSANAKPQYDIIHEAWQSRAIIRYEIAVPRNLSERRAKQCSGRVGVETVITLSHNSRRIDADINLDNQADDHRIRVLIPTPFNTDVVLADTQFGSLTRPVKDCAMNVWQQEGWKEAPVPVWNMLNYAVLQEGRNGIAVFSEGLREFEVIGEENKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVSDSQLRGSFSCRLSLFSYIGTPVTAGVAQQARAWLTPVQCYNKIPWDAMKLNKAKFNVPESYSLLKMPPVGCLISALKKAEDRQELILRLFNPAELTSCDATVAFSRKVMTCTETMMNERFNTEKNEVLKELALFLPGQSRTFSYRIV
>NZ_CP021935.1|WP_000725054.1|3947023_3948217_+|tetratricopeptide-repeat-protein
MKKIVLPVALALLGMNAGAYAADVSIDILSATVKDKRIEGASVTLQRNGAQSVSGITNTSGSISLGTSFADNKDALLIVKKEGYSNLVVKCPCAGMTYAISPVMTNLDGMRVVLSWGEKPFDLDSHLIFPGGHIYFDSKEGTDANLDVDDTDSYGPETVTISKKHFGESYIYAVQDYSNKGLPNSNYLSASKAKVFVYVGSSLVRSYSVPAGKRGNIWTVFKLNPNGEFEDINSVTSANFNGTTLDVRDLATVIMPATDSSAPASPAMQNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGVNAATTRANSYYNIAKIYETSGQNAEALQHYQLAYTEKNKPSYEEAIARVKTKM
>NZ_CP021935.1|WP_000884361.1|3949759_3951328_+|cytochrome-ubiquinol-oxidase-subunit-I
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
>NZ_CP021935.1|WP_000568275.1|3951343_3952483_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY

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Crispr_ID: NZ_CP021935_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021935_2

4100994-4101076

Orphan

I-F

Consensus_repeat	Method
AGTTCACTGCCGTACAGGCAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021935_2

>merge|NZ_CP021935|2|4100994-4101076|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGTTCACTGCCGTACAGGCAGAT

>NZ_CP021935|2|2|4100994-4101076|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCT	TAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACA
AGTTCACTGCCGTACAGGCAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021935.1\|WP_000188152.1\|4095588_4097535_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP021935.1\|WP_000067797.1\|4113351_4114695_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP021935.1\|WP_001043561.1\|4104437_4106204_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP021935.1\|WP_001040187.1\|4101466_4101685_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP021935.1\|WP_000458841.1\|4087484_4089137_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP021935.1\|WP_000886683.1\|4114785_4116078_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP021935.1\|WP_000410785.1\|4097607_4097832_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP021935.1\|WP_000599803.1\|4091714_4093373_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP021935.1\|WP_000228473.1\|4107835_4108330_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP021935.1\|WP_000520781.1\|4098154_4098475_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP021935.1\|WP_000934041.1\|4098505_4100782_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP021935.1\|WP_001202204.1\|4102715_4104437_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP021935.1\|WP_000488716.1\|4090594_4091290_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP021935.1\|WP_001385255.1\|4106326_4107292_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP021935.1\|WP_000491137.1\|4089280_4090180_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP021935.1\|WP_001241674.1\|4101969_4102674_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP021935.1\|WP_001295343.1\|4112729_4113341_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP021935.1\|WP_001351020.1\|4093369_4094326_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP021935.1\|WP_000077041.1\|4108464_4112571_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP021935.1\|WP_000746478.1\|4094476_4095592_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211

Protein	Function_ID	Function_description	E-value
NZ_CP021935.1\|WP_000188152.1\|4095588_4097535_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP021935.1\|WP_000067797.1\|4113351_4114695_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP021935.1\|WP_001043561.1\|4104437_4106204_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP021935.1\|WP_001040187.1\|4101466_4101685_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP021935.1\|WP_000458841.1\|4087484_4089137_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP021935.1\|WP_000886683.1\|4114785_4116078_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP021935.1\|WP_000410785.1\|4097607_4097832_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP021935.1\|WP_000599803.1\|4091714_4093373_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP021935.1\|WP_000228473.1\|4107835_4108330_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP021935.1\|WP_000520781.1\|4098154_4098475_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP021935.1\|WP_000934041.1\|4098505_4100782_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP021935.1\|WP_001202204.1\|4102715_4104437_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP021935.1\|WP_000488716.1\|4090594_4091290_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP021935.1\|WP_001385255.1\|4106326_4107292_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP021935.1\|WP_000491137.1\|4089280_4090180_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
NZ_CP021935.1\|WP_001241674.1\|4101969_4102674_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
NZ_CP021935.1\|WP_001295343.1\|4112729_4113341_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP021935.1\|WP_001351020.1\|4093369_4094326_-\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131
NZ_CP021935.1\|WP_000077041.1\|4108464_4112571_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP021935.1\|WP_000746478.1\|4094476_4095592_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0

>NZ_CP021935.1|WP_000934041.1|4098505_4100782_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP021935.1|WP_000520781.1|4098154_4098475_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP021935.1|WP_000410785.1|4097607_4097832_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP021935.1|WP_000188152.1|4095588_4097535_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP021935.1|WP_000746478.1|4094476_4095592_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP021935.1|WP_001351020.1|4093369_4094326_-|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP021935.1|WP_000599803.1|4091714_4093373_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP021935.1|WP_000488716.1|4090594_4091290_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP021935.1|WP_000491137.1|4089280_4090180_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP021935.1|WP_000458841.1|4087484_4089137_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP021935.1|WP_001040187.1|4101466_4101685_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP021935.1|WP_001241674.1|4101969_4102674_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP021935.1|WP_001202204.1|4102715_4104437_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP021935.1|WP_001043561.1|4104437_4106204_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP021935.1|WP_001385255.1|4106326_4107292_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP021935.1|WP_000228473.1|4107835_4108330_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP021935.1|WP_000077041.1|4108464_4112571_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP021935.1|WP_001295343.1|4112729_4113341_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP021935.1|WP_000067797.1|4113351_4114695_+|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP021935.1|WP_000886683.1|4114785_4116078_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12111-12158	8	0.833
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	424237-424284	8	0.833
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7391-7438	10	0.792
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84215-84262	10	0.792
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87125-87172	10	0.792
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229237-229284	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229338-229385	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229439-229486	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239731-239778	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239832-239879	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239933-239980	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15006-15053	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230643-230690	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230744-230791	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230845-230892	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211613-211660	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211714-211761	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211815-211862	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31250-31297	11	0.771
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3371-3418	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4012-4059	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4113-4160	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208980-209027	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3370-3417	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4011-4058	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4112-4159	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219474-219521	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3370-3417	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4011-4058	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4112-4159	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210308-210355	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3370-3417	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4011-4058	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4112-4159	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191263-191310	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	270-317	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101195-101242	12	0.75
NZ_CP021935_1	1.1\|3934834\|48\|NZ_CP021935\|CRISPRCasFinder	3934834-3934881	48	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	158-205	13	0.729

1. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* ****************   *.*

2. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggcaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *********  . .

3. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

4. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

5. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  ****************    **

6. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

7. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

8. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

9. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

10. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

11. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

12. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* ****************  ..*.

13. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

14. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

15. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

16. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

17. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

18. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

19. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  ****************   * .

20. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

21. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

22. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

23. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

24. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

25. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

26. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

27. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

28. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

29. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

30. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

31. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

32. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

33. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

34. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

35. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

36. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  ****************   * .

37. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 **.   ****************** ***************.   *..

38. spacer 1.1|3934834|48|NZ_CP021935|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. ***************    * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22512 : 112012

103

Escherichia_phage(22.22%)

transposase,tRNA,tail,holin,terminase,capsid,plate,integrase,portal

attL 68209:68268|attR 112074:112198

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099156422.1\|22512_23861_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.7e-74	52.4
WP_000568520.1\|23970_24981_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_000580323.1\|24989_25601_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_072093883.1\|25739_25805_-	hypothetical protein	NA	NA	NA	NA
WP_001024911.1\|25875_26478_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_001295503.1\|26479_27001_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_000907234.1\|27035_27776_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_077249130.1\|27804_28257_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_001258676.1\|28249_30022_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_000891625.1\|30331_30898_+	hydrolase	NA	NA	NA	NA
WP_000639277.1\|30894_31713_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000252980.1\|31765_32161_+	hypothetical protein	NA	NA	NA	NA
WP_000019588.1\|32201_32945_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000564759.1\|32941_33913_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000176764.1\|33948_36378_-	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA
WP_001214293.1\|36402_37503_-	cytochrome c	NA	NA	NA	NA
WP_001185734.1\|37890_38637_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001490174.1\|38650_39217_-	VOC family protein	NA	NA	NA	NA
WP_001025326.1\|39432_41166_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001202076.1\|41218_41611_-	flagellar protein FlhE	NA	NA	NA	NA
WP_000066973.1\|41610_43689_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001278946.1\|43681_44830_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000983600.1\|45018_45663_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_000763867.1\|45673_46063_-	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000036371.1\|46077_47127_-	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000204320.1\|47129_47990_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_001296146.1\|48280_49942_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000147302.1\|50086_50590_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_001531763.1\|50610_52575_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_000795641.1\|52579_53506_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_000906342.1\|53502_54390_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_001291603.1\|54516_55095_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_001295647.1\|55097_55448_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_000122413.1\|56227_56656_+	universal stress protein UspC	NA	NA	NA	NA
WP_001296148.1\|56662_58087_-	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_001296149.1\|58061_58862_-	trehalose-phosphatase	NA	NA	NA	NA
WP_000100203.1\|59028_60015_-	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001187827.1\|60029_61544_-	L-arabinose ABC transporter ATP-binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000548680.1\|61613_62603_-	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000179469.1\|63397_63901_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000082127.1\|63978_64230_-	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_010723106.1\|64344_64431_-	stress response protein AzuC	NA	NA	NA	NA
WP_001237881.1\|64694_65018_+	hypothetical protein	NA	NA	NA	NA
WP_000917208.1\|65189_65687_+	non-heme ferritin	NA	NA	NA	NA
WP_000377224.1\|65724_65964_-	YecH family protein	NA	NA	NA	NA
WP_000797555.1\|66154_67366_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000847882.1\|67416_68082_-	UPF0149 family protein YecA	NA	NA	NA	NA
68209:68268	attL	NA	NA	NA	NA
WP_001296152.1\|68553_68973_-	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_001531767.1\|70187_70412_-	hypothetical protein	NA	NA	NA	NA
WP_001531768.1\|70573_70963_-\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001018353.1\|70998_72639_-	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_000444667.1\|72747_73029_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000785563.1\|73041_73554_-\|tail	phage tail protein	NA	NA	NA	NA
WP_000117510.1\|73571_75074_-\|tail	tail sheath protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000626358.1\|75070_75460_-	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_000829621.1\|75459_76644_-\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000203868.1\|76636_77263_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_000633314.1\|77265_78186_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000901289.1\|78182_78524_-\|plate	phage baseplate assembly protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000079174.1\|78526_79429_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000015612.1\|79409_79946_-	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|79942_80623_-	hypothetical protein	NA	NA	NA	NA
WP_001531773.1\|80654_81035_-	hypothetical protein	NA	NA	NA	NA
WP_000105179.1\|81031_81451_-	DNA-packaging protein	NA	NA	NA	NA
WP_001283997.1\|81485_82520_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
WP_000206292.1\|82578_82908_-	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001145892.1\|82907_84215_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000126513.1\|84214_85789_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_000203897.1\|85785_86019_-	hypothetical protein	NA	NA	NA	NA
WP_000148195.1\|86018_87881_-\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000168117.1\|87867_88434_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_001531775.1\|88802_89048_+	hypothetical protein	NA	NA	NA	NA
WP_000734931.1\|89107_89302_-	hypothetical protein	NA	NA	NA	NA
WP_000131873.1\|89309_89789_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000172496.1\|89788_90061_-\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_001294589.1\|90060_90444_-	hypothetical protein	NA	NA	NA	NA
WP_000064384.1\|90556_91228_-	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_000717783.1\|91227_91521_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000057010.1\|91517_92114_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_001025459.1\|92191_92371_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|92522_93164_-	hypothetical protein	NA	NA	NA	NA
WP_000536919.1\|93407_93641_+	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|94039_94528_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_001138663.1\|94537_95143_+	hypothetical protein	NA	NA	NA	NA
WP_000536231.1\|95605_96304_-	hypothetical protein	Q858R8	Enterobacteria_phage	1.5e-117	91.4
WP_001237642.1\|97491_98415_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_001531776.1\|98589_99378_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_000661082.1\|100059_100284_-	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|100280_100592_-	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000918616.1\|100588_100825_-	hypothetical protein	NA	NA	NA	NA
WP_000214056.1\|100826_101237_-	hypothetical protein	NA	NA	NA	NA
WP_000609322.1\|101275_102691_-	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_001023813.1\|102680_103436_-	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
WP_000943914.1\|103432_103657_-	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_000431205.1\|103696_104173_-	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000360804.1\|104231_104462_-	transcriptional regulator	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_001296165.1\|104560_104974_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000388260.1\|105984_106305_+	hypothetical protein	NA	NA	NA	NA
WP_000151806.1\|106335_108552_+	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000100753.1\|108548_109118_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
WP_085949154.1\|109184_110332_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	2.4e-173	96.3
WP_000833838.1\|110763_111027_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_001531780.1\|110995_112012_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
112074:112198	attR	NA	NA	NA	NA

DBSCAN-SWA_2

233963 : 270261

Stx2-converting_phage(21.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001296203.1\|233963_235160_+\|transposase	IS110-like element ISEc20 family transposase	NA	NA	NA	NA
WP_001304240.1\|235283_235562_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000813432.1\|235655_236258_+	hypothetical protein	NA	NA	NA	NA
WP_001327829.1\|236731_236947_+	hypothetical protein	NA	NA	NA	NA
WP_072093906.1\|237283_237979_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.3e-118	88.4
WP_000255956.1\|237975_238998_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
WP_089438313.1\|239143_239323_+\|transposase	transposase	NA	NA	NA	NA
WP_001296206.1\|240522_241668_+	hypothetical protein	NA	NA	NA	NA
WP_001163787.1\|242198_242456_-	hypothetical protein	NA	NA	NA	NA
WP_000016207.1\|242509_243277_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.5e-14	27.9
WP_000217077.1\|243273_244332_-	iron ABC transporter permease	NA	NA	NA	NA
WP_000778018.1\|244350_245340_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000856948.1\|245350_247516_-	TonB-dependent receptor	NA	NA	NA	NA
WP_001069649.1\|247944_248379_+	hypothetical protein	NA	NA	NA	NA
WP_001531797.1\|248596_250981_+	hypothetical protein	NA	NA	NA	NA
WP_000203551.1\|250977_251883_+	chemotaxis protein	NA	NA	NA	NA
WP_000102633.1\|251879_252950_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_001542273.1\|253085_253499_+	hypothetical protein	NA	NA	NA	NA
WP_001298859.1\|253613_255155_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001016257.1\|255169_255916_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_000846703.1\|256364_256775_+	hypothetical protein	NA	NA	NA	NA
WP_001542275.1\|256995_257814_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	8.8e-45	38.6
WP_001164966.1\|257813_258059_+	hypothetical protein	NA	NA	NA	NA
WP_001542276.1\|258152_258626_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	4.3e-12	33.1
WP_001186200.1\|258641_259118_+	RadC family protein	NA	NA	NA	NA
WP_000692345.1\|259180_259402_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_000086752.1\|259420_260065_+	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.8e-24	32.9
WP_001280918.1\|260080_260449_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000854815.1\|260537_260912_+	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_000988600.1\|260908_261103_+	hypothetical protein	NA	NA	NA	NA
WP_001161660.1\|261115_261229_+	DUF957 domain-containing protein	NA	NA	NA	NA
WP_050482493.1\|261717_261870_+	ethanolamine utilization protein	NA	NA	NA	NA
WP_000422741.1\|261951_262377_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|262373_262724_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000080195.1\|262754_264368_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000450409.1\|264540_264870_-	DUF496 family protein	NA	NA	NA	NA
WP_001200889.1\|265041_266100_-	FUSC family protein	NA	NA	NA	NA
WP_001105368.1\|266297_266771_-	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_001296209.1\|266889_268056_-	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	5.9e-228	99.5
WP_000980556.1\|268264_269692_+	exodeoxyribonuclease I	NA	NA	NA	NA
WP_001531805.1\|269802_270261_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.2e-11	31.5

DBSCAN-SWA_3

293408 : 299711

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001100793.1\|293408_293951_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8
WP_000857525.1\|293955_294834_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.5
WP_001023641.1\|294891_295791_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_000699407.1\|295790_296876_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-101	53.9
WP_000183040.1\|297248_298142_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.0e-46	42.0
WP_001116066.1\|298316_299711_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0

DBSCAN-SWA_4

393887 : 403332

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292786.1\|393887_395024_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7
WP_001296230.1\|395020_397024_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001296231.1\|397148_397610_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001295430.1\|397650_398121_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|398167_398887_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|398883_400569_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240408.1\|400790_401522_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001216963.1\|401581_401689_+	protein YohO	NA	NA	NA	NA
WP_000783109.1\|401669_402401_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569347.1\|402405_403332_-	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.8

DBSCAN-SWA_5

779097 : 822990

Escherichia_phage(58.7%)

terminase,integrase,holin,tail

attL 780737:780753|attR 819876:819892

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001344399.1\|779097_779271_+	DUF2633 family protein	G9L6F2	Escherichia_phage	6.8e-24	100.0
WP_000669398.1\|779575_780091_+	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	2.9e-62	99.4
WP_000755178.1\|780106_780646_+	hypothetical protein	G9L6F0	Escherichia_phage	1.4e-43	98.9
780737:780753	attL	NA	NA	NA	NA
WP_015675091.1\|780863_781346_-	DUF2514 domain-containing protein	A0A0F6TK39	Escherichia_coli_O157_typing_phage	8.5e-72	91.2
WP_000403801.1\|781342_781972_-	glycoside hydrolase family 19 protein	G9L6E8	Escherichia_phage	3.4e-113	97.1
WP_000256104.1\|781961_782270_-\|holin	phage holin family protein	G9L6E7	Escherichia_phage	1.6e-47	94.1
WP_000009883.1\|782256_782661_-	hypothetical protein	G9L6E6	Escherichia_phage	3.9e-62	95.5
WP_000218900.1\|782733_785196_-	hypothetical protein	O09496	Escherichia_virus	7.4e-164	48.6
WP_001188261.1\|785392_785650_+	hypothetical protein	G9L6E3	Escherichia_phage	4.9e-42	98.8
WP_000127505.1\|785965_786661_+	hypothetical protein	G9L6E2	Escherichia_phage	5.4e-128	100.0
WP_000163643.1\|786790_787117_+	hypothetical protein	NA	NA	NA	NA
WP_000479990.1\|787103_787616_+	hypothetical protein	NA	NA	NA	NA
WP_000708858.1\|787697_787859_+	hypothetical protein	G9L6D9	Escherichia_phage	2.5e-20	100.0
WP_000643933.1\|787895_788456_-	hypothetical protein	NA	NA	NA	NA
WP_000729722.1\|788458_791008_-	hypothetical protein	W6MWW8	Pseudomonas_phage	1.2e-204	45.4
WP_001123471.1\|791007_792705_-	hypothetical protein	NA	NA	NA	NA
WP_001145657.1\|792706_795328_-	transglycosylase SLT domain-containing protein	A0A0F6R8M6	Escherichia_coli_O157_typing_phage	9.9e-74	39.3
WP_000332878.1\|795327_795873_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	9.8e-93	100.0
WP_000568023.1\|795872_796337_-	hypothetical protein	G9L6D1	Escherichia_phage	8.4e-85	100.0
WP_077727395.1\|796336_798808_-	hypothetical protein	G9L6D0	Escherichia_phage	0.0e+00	98.9
WP_000179267.1\|798807_799413_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	6.2e-112	99.5
WP_000424495.1\|799412_799736_-	hypothetical protein	A0A0F6R8M8	Escherichia_coli_O157_typing_phage	2.6e-53	98.1
WP_000012377.1\|799786_800122_-	hypothetical protein	G9L6C7	Escherichia_phage	7.7e-56	100.0
WP_000627071.1\|800132_800570_-	hypothetical protein	G9L6C6	Escherichia_phage	6.3e-74	99.3
WP_077727393.1\|800621_801608_-	hypothetical protein	G9L6C5	Escherichia_phage	6.2e-186	99.1
WP_001048087.1\|801622_802318_-	peptidase	G9L6C4	Escherichia_phage	3.0e-94	99.6
WP_000133160.1\|802320_802617_-	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
WP_077727390.1\|802613_804293_-\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	4.7e-303	98.9
WP_000335899.1\|804307_804514_-	hypothetical protein	G9L6C1	Escherichia_phage	6.0e-11	100.0
WP_000999680.1\|805216_805588_+	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	2.9e-56	89.4
WP_000132524.1\|805678_807154_-	hypothetical protein	G9L6B8	Escherichia_phage	1.3e-296	99.2
WP_077727401.1\|807150_807825_-\|terminase	terminase small subunit	Q287B7	Escherichia_phage	7.6e-119	99.1
WP_001130064.1\|807864_808203_-	hypothetical protein	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	3.7e-50	87.5
WP_088251332.1\|809227_809587_-	hypothetical protein	A0A076GCN9	Escherichia_phage	2.7e-38	76.7
WP_088251333.1\|809840_810155_-	hypothetical protein	A0A088CQ13	Enterobacteria_phage	3.1e-43	87.9
WP_023278464.1\|810157_810682_-	hypothetical protein	G9L6B1	Escherichia_phage	7.9e-39	70.9
WP_001231254.1\|810743_811088_-	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.4e-60	97.4
WP_001066741.1\|811205_811991_-	hypothetical protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	3.6e-152	99.6
WP_001531880.1\|811987_812779_-	hypothetical protein	Q286X4	Escherichia_phage	8.3e-117	90.9
WP_001282459.1\|813145_813376_-	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
WP_000836290.1\|813530_814115_+	helix-turn-helix transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
WP_088251334.1\|814424_814724_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	4.6e-44	93.9
WP_021524932.1\|814720_815542_+	hypothetical protein	G9L6A3	Escherichia_phage	6.1e-163	98.9
WP_000063821.1\|815538_816420_+	recombinase RecT	G9L6A2	Escherichia_phage	6.8e-160	99.0
WP_000675390.1\|816469_816718_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
WP_088251378.1\|816875_817127_+	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	2.6e-40	97.6
WP_088251335.1\|817119_817770_+	adenine methylase	G9L699	Escherichia_phage	1.4e-125	97.7
WP_000061188.1\|817766_818426_+	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	5.7e-103	79.5
WP_000954576.1\|818428_819685_-\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	6.3e-236	99.0
WP_000138282.1\|819877_821455_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
819876:819892	attR	NA	NA	NA	NA
WP_001296289.1\|821523_822990_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-88	38.9

DBSCAN-SWA_6

1018908 : 1026048

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000103863.1\|1018908_1021470_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
WP_001141293.1\|1021575_1022232_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_001296319.1\|1022282_1023050_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_000847996.1\|1023245_1024154_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_000590411.1\|1024150_1025413_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_001279004.1\|1025409_1026048_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5

DBSCAN-SWA_7

1284270 : 1347979

Escherichia_phage(28.57%)

tRNA,integrase,protease,transposase

attL 1276526:1276543|attR 1336804:1336821

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1276526:1276543	attL	NA	NA	NA	NA
WP_001296359.1\|1284270_1284768_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286500.1\|1284862_1285570_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001222509.1\|1285649_1286381_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593274.1\|1286393_1287344_+	glutathione synthase	NA	NA	NA	NA
WP_001053178.1\|1287452_1288016_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017111.1\|1288015_1288432_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001296360.1\|1288546_1289527_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|1289544_1290249_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|1290266_1290833_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277229.1\|1290829_1291120_+	YggU family protein	NA	NA	NA	NA
WP_001174754.1\|1291127_1291721_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239963.1\|1291713_1292850_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000783999.1\|1293164_1294151_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_000577034.1\|1294195_1294699_+	TRAP transporter small permease	NA	NA	NA	NA
WP_000378955.1\|1294698_1296000_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_000745240.1\|1296055_1297063_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394132.1\|1297179_1298226_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|1298401_1299121_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001296361.1\|1299141_1299282_-	hypothetical protein	NA	NA	NA	NA
WP_001107566.1\|1299304_1299631_-	YggL family protein	NA	NA	NA	NA
WP_000786911.1\|1299630_1300350_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001296362.1\|1300510_1301563_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|1301590_1301866_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000760323.1\|1301930_1303010_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001296363.1\|1303211_1304468_+	nucleoside permease	NA	NA	NA	NA
WP_000839781.1\|1304516_1306652_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234526.1\|1307044_1307752_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001218869.1\|1308130_1309396_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
WP_000147017.1\|1309651_1310695_+	hypothetical protein	NA	NA	NA	NA
WP_001774069.1\|1312388_1312940_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000006213.1\|1315431_1315665_+	Major pilus subunit operon regulatory protein	NA	NA	NA	NA
WP_023146305.1\|1316131_1316347_+	hypothetical protein	A0A0N7C1Y0	Escherichia_phage	1.7e-27	85.2
WP_099156432.1\|1316315_1317442_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	2.5e-146	96.6
WP_001513409.1\|1317532_1317646_-	hypothetical protein	NA	NA	NA	NA
WP_001110186.1\|1319479_1319740_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000109147.1\|1319781_1320342_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001296373.1\|1320381_1320810_+	DUF417 family protein	NA	NA	NA	NA
WP_000074472.1\|1321527_1322721_-	MFS transporter	NA	NA	NA	NA
WP_001296374.1\|1322856_1324581_+	aerobactin synthase IucA	NA	NA	NA	NA
WP_001287500.1\|1324581_1325529_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001015715.1\|1325528_1327271_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_000750130.1\|1327267_1328545_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_000973516.1\|1328626_1330828_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_001034083.1\|1331771_1335659_+\|protease	serine protease autotransporter toxin Sat	Q9LA58	Enterobacterial_phage	1.2e-227	39.0
WP_001254932.1\|1336255_1337407_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
1336804:1336821	attR	NA	NA	NA	NA
WP_000266542.1\|1342187_1342403_-	hypothetical protein	NA	NA	NA	NA
WP_001296382.1\|1342406_1342766_-	hypothetical protein	NA	NA	NA	NA
WP_001322947.1\|1342777_1342969_-	hypothetical protein	NA	NA	NA	NA
WP_001305021.1\|1343056_1343329_-	hypothetical protein	NA	NA	NA	NA
WP_001223344.1\|1344160_1346251_-	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_096928816.1\|1346750_1347979_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	7.2e-168	94.4

DBSCAN-SWA_8

3097960 : 3168740

Shigella_phage(33.9%)

tRNA,protease,tail,holin,head,terminase,capsid,plate,integrase,portal

attL 3097235:3097250|attR 3127331:3127346

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3097235:3097250	attL	NA	NA	NA	NA
WP_088251358.1\|3097960_3099184_+\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	6.2e-236	98.5
WP_000040218.1\|3099470_3100190_+	hypothetical protein	NA	NA	NA	NA
WP_088251359.1\|3100677_3101124_-	DUF551 domain-containing protein	A0A0N7KZJ2	Stx2-converting_phage	1.1e-36	73.2
WP_000212745.1\|3101127_3101415_-	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	3.5e-49	98.9
WP_139595393.1\|3101416_3101878_-	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	3.7e-32	59.1
WP_088251361.1\|3101874_3102372_-	hypothetical protein	G9L663	Escherichia_phage	1.3e-59	91.4
WP_088251362.1\|3102362_3102899_-	5'-deoxynucleotidase	A5LH62	Enterobacteria_phage	4.1e-99	98.3
WP_000081287.1\|3103026_3103851_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000135682.1\|3103916_3104279_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_001020632.1\|3105001_3105694_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	6.4e-121	96.5
WP_088251363.1\|3105791_3106052_+	helix-turn-helix transcriptional regulator	A0A0P0ZCZ7	Stx2-converting_phage	4.6e-40	98.8
WP_088251364.1\|3106044_3106596_+	hypothetical protein	Q8SBF4	Shigella_phage	2.4e-99	97.8
WP_088251365.1\|3106592_3107744_+	peptidase	A0A0P0ZE80	Stx2-converting_phage	6.9e-213	98.2
WP_000620701.1\|3107740_3107965_+	hypothetical protein	A5LH70	Enterobacteria_phage	9.7e-39	98.6
WP_088251366.1\|3107961_3108780_+	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	3.7e-128	90.1
WP_088251367.1\|3108776_3109271_+	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	4.4e-84	95.7
WP_000066917.1\|3109270_3109924_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
WP_000210170.1\|3109920_3110247_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	5.4e-54	100.0
WP_088251368.1\|3110243_3110633_+	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	4.6e-68	98.4
WP_001061404.1\|3110652_3111450_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	5.2e-151	100.0
WP_001436142.1\|3111457_3112447_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.6e-195	99.4
WP_088251369.1\|3112460_3113213_+	antitermination protein	A0A192Y5X6	Salmonella_phage	4.2e-142	98.0
WP_001569330.1\|3113363_3113621_+	hypothetical protein	A0A1C9IHX4	Salmonella_phage	5.6e-38	95.3
WP_001283169.1\|3113700_3114087_+	membrane protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
WP_000422366.1\|3114073_3114355_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
WP_088251370.1\|3114354_3114969_+	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.3e-111	98.5
WP_001476996.1\|3114965_3115358_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	7.4e-58	91.4
WP_000651450.1\|3115604_3115925_+	hypothetical protein	NA	NA	NA	NA
WP_001135203.1\|3116017_3116368_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	1.4e-63	97.4
WP_000929172.1\|3116493_3116988_+\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	8.6e-88	99.4
WP_096954127.1\|3117221_3118718_+\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	8.8e-301	100.0
WP_000605604.1\|3118729_3118912_+	hypothetical protein	M1FJ83	Enterobacteria_phage	1.7e-25	100.0
WP_058905552.1\|3118911_3120153_+\|portal	phage portal protein	U5P411	Shigella_phage	5.0e-241	99.3
WP_001193633.1\|3120130_3120781_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	7.3e-119	99.5
WP_088251371.1\|3120795_3122001_+\|capsid	phage major capsid protein	U5P0G9	Shigella_phage	2.2e-222	98.5
WP_000601363.1\|3122050_3122251_+	hypothetical protein	S5FNU1	Shigella_phage	1.7e-26	98.5
WP_000927713.1\|3122253_3122577_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	9.7e-56	98.1
WP_088251372.1\|3122573_3122984_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	2.3e-70	94.9
WP_000224835.1\|3122958_3123465_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.3e-83	92.9
WP_001407136.1\|3123461_3124022_+	hypothetical protein	Q8SBH4	Shigella_phage	4.0e-105	98.9
WP_000497751.1\|3124030_3124201_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_048230180.1\|3124184_3125681_+\|tail	tail sheath protein	M1FN90	Enterobacteria_phage	4.1e-274	99.4
WP_000090998.1\|3125680_3126037_+	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_000661054.1\|3126036_3126306_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
WP_088251373.1\|3126447_3128280_+\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	5.5e-305	99.3
3127331:3127346	attR	NA	NA	NA	NA
WP_001439754.1\|3128361_3128874_+	hypothetical protein	NA	NA	NA	NA
WP_000219915.1\|3128964_3130293_+	DNA circularization protein	Q8SBG8	Shigella_phage	2.5e-246	99.1
WP_021567870.1\|3130289_3131369_+\|tail	phage tail protein	Q8SBG7	Shigella_phage	3.4e-206	99.2
WP_001752126.1\|3131368_3131917_+\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	8.1e-95	96.7
WP_000424732.1\|3131916_3132342_+	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_088251374.1\|3132328_3133387_+\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	5.2e-199	98.3
WP_059339246.1\|3133377_3133962_+	YmfQ family protein	O22003	Shigella_phage	5.9e-112	99.0
WP_097426015.1\|3133965_3135894_+	hypothetical protein	A0A2D2W320	Escherichia_phage	1.3e-123	45.2
WP_001217539.1\|3136254_3136503_-	DinI family protein	A5LH55	Enterobacteria_phage	1.1e-38	100.0
WP_000202564.1\|3136722_3138309_+	peptide chain release factor 3	D0R0F5	Streptococcus_phage	5.3e-30	24.9
WP_001295748.1\|3138701_3139307_+	molecular chaperone OsmY	NA	NA	NA	NA
WP_000490275.1\|3139433_3139595_+	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
WP_001295749.1\|3139716_3140790_+	patatin family protein	NA	NA	NA	NA
WP_000563058.1\|3140786_3141569_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_001088418.1\|3142084_3142948_-	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_001143221.1\|3142919_3144470_-	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_001295412.1\|3144727_3145507_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_000477800.1\|3145584_3146907_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	1.5e-78	39.5
WP_000816460.1\|3146958_3148182_+	phosphopentomutase	NA	NA	NA	NA
WP_000224879.1\|3148238_3148958_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_001293116.1\|3149124_3150456_+	type II toxin-antitoxin system HipA family toxin YjjJ	NA	NA	NA	NA
WP_000105853.1\|3150456_3151473_-	lipoate--protein ligase LplA	NA	NA	NA	NA
WP_000124608.1\|3151500_3152145_-	YtjB family periplasmic protein	NA	NA	NA	NA
WP_001132966.1\|3152250_3153219_+	phosphoserine phosphatase	NA	NA	NA	NA
WP_001295751.1\|3153267_3154650_+	DNA repair protein RadA	NA	NA	NA	NA
WP_000093834.1\|3154670_3155903_+	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	2.1e-82	42.6
WP_000046754.1\|3156023_3157691_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	1.0e-39	27.7
WP_000409419.1\|3157897_3159835_+	murein transglycosylase	A0A1P8CWQ1	Bacillus_phage	4.0e-11	34.8
WP_000068677.1\|3159924_3160251_+	trp operon repressor	NA	NA	NA	NA
WP_001531361.1\|3160329_3160857_-	non-canonical purine NTP phosphatase	NA	NA	NA	NA
WP_000942350.1\|3160908_3161556_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB	NA	NA	NA	NA
WP_000371666.1\|3161552_3162422_-	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA
WP_000875487.1\|3162632_3163106_+	protein CreA	NA	NA	NA	NA
WP_001188689.1\|3163118_3163808_+	two-component system response regulator CreB	W8CYM9	Bacillus_phage	8.8e-30	35.3
WP_001219582.1\|3163807_3165232_+	two-component system sensor histidine kinase CreC	Q8QKV7	Ectocarpus_siliculosus_virus	3.2e-10	20.9
WP_000920358.1\|3165289_3166642_+	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_001194358.1\|3166701_3167418_-	two-component system response regulator ArcA	NA	NA	NA	NA
WP_001295754.1\|3167513_3167654_+	hypothetical protein	NA	NA	NA	NA
WP_001223200.1\|3168053_3168740_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_9

4098154 : 4207946

131

Enterobacteria_phage(44.79%)

tRNA,transposase,protease,tail,holin,head,terminase,capsid,plate,integrase,portal

attL 4193544:4193559|attR 4212865:4212880

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000520781.1\|4098154_4098475_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000934041.1\|4098505_4100782_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_001040187.1\|4101466_4101685_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_001241674.1\|4101969_4102674_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001202204.1\|4102715_4104437_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.2e-14	30.8
WP_001043561.1\|4104437_4106204_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001385255.1\|4106326_4107292_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.6
WP_000228473.1\|4107835_4108330_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000077041.1\|4108464_4112571_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_001295343.1\|4112729_4113341_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000067797.1\|4113351_4114695_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_000886683.1\|4114785_4116078_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000078916.1\|4116383_4116524_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_000488106.1\|4116715_4116976_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000132830.1\|4117016_4118126_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.3e-195	94.9
WP_000005447.1\|4118283_4119468_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.4e-222	97.5
WP_000290462.1\|4119467_4119980_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000651577.1\|4120035_4120410_+\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.9e-36	71.5
WP_000333503.1\|4120418_4120574_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000853410.1\|4120560_4123368_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	90.1
WP_000979945.1\|4123380_4123869_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_000905061.1\|4123897_4124497_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.8e-98	98.9
WP_032142265.1\|4124715_4125273_+	hypothetical protein	A0A0A7NPY7	Enterobacteria_phage	5.0e-84	88.5
WP_000972134.1\|4125275_4125809_+\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	4.2e-96	98.9
WP_001554335.1\|4125837_4126365_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	2.6e-90	93.7
WP_032140708.1\|4126366_4128589_-\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	3.8e-183	65.0
WP_000071703.1\|4128591_4129122_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	3.6e-92	98.2
WP_001111954.1\|4129114_4130011_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	3.3e-154	97.7
WP_000213444.1\|4130014_4130365_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	3.5e-59	99.1
WP_001271941.1\|4130361_4130943_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	3.3e-102	98.4
WP_000356366.1\|4130939_4131575_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.1e-114	99.5
WP_000921127.1\|4131567_4132035_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.5e-83	95.5
WP_000202148.1\|4132058_4133936_-	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	2.7e-299	80.2
WP_000780577.1\|4134074_4134470_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	1.0e-59	93.3
WP_000072341.1\|4134466_4134859_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.9e-69	96.9
WP_001342221.1\|4134855_4135179_-\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.7e-47	93.5
WP_000864901.1\|4135181_4135382_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000063100.1\|4135381_4135876_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.9e-87	97.0
WP_000632309.1\|4135977_4136778_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.9e-127	89.1
WP_001055083.1\|4136823_4137876_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.4e-188	94.3
WP_001262655.1\|4137899_4138736_-\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	99.6
WP_000613780.1\|4138890_4140642_+\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.8
WP_000087814.1\|4140641_4141688_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.2e-202	99.7
WP_000236495.1\|4141702_4142227_-	hypothetical protein	NA	NA	NA	NA
WP_001068329.1\|4142950_4143448_+	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_000193205.1\|4143487_4144330_+	hypothetical protein	NA	NA	NA	NA
WP_000211282.1\|4144413_4144728_-	plasmid partition protein	A0A0A7NPT5	Enterobacteria_phage	4.1e-19	52.3
WP_000686485.1\|4144732_4145692_-	recombinase	A0A0A7NPX4	Enterobacteria_phage	4.2e-179	99.1
WP_000123489.1\|4145768_4148591_-	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	98.4
WP_000599382.1\|4148597_4148963_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.7e-61	97.5
WP_000013455.1\|4149035_4149266_-	hypothetical protein	A0A0A7NV48	Enterobacteria_phage	9.1e-32	97.4
WP_000104290.1\|4149588_4149888_-	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	2.4e-40	88.9
WP_000153700.1\|4149884_4150151_-	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	2.0e-30	75.9
WP_000985157.1\|4150147_4150351_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000543036.1\|4150374_4150785_-	hypothetical protein	NA	NA	NA	NA
WP_000021715.1\|4150878_4150992_-	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.8e-09	89.2
WP_000514277.1\|4150988_4151231_-	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000159455.1\|4151242_4151521_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.1e-34	79.3
WP_000776267.1\|4151531_4151882_-	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.1e-56	93.1
WP_001287828.1\|4152019_4152211_+	hypothetical protein	NA	NA	NA	NA
WP_000856387.1\|4152217_4152640_-	hypothetical protein	NA	NA	NA	NA
WP_001204236.1\|4152644_4153166_-	transcriptional regulator	NA	NA	NA	NA
WP_001368591.1\|4153270_4153612_+	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	4.7e-16	51.2
WP_000023739.1\|4153681_4154674_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.3e-103	56.2
WP_000850306.1\|4154973_4157418_+	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
WP_000213098.1\|4157428_4158046_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000534666.1\|4158047_4158911_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000165876.1\|4158946_4159573_-	hydrolase	NA	NA	NA	NA
WP_000109283.1\|4159886_4161035_+	MFS transporter	NA	NA	NA	NA
WP_000111043.1\|4161131_4161872_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	8.0e-21	26.5
WP_001292822.1\|4162063_4164346_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
WP_001295917.1\|4164400_4165258_-	formate transporter FocA	NA	NA	NA	NA
WP_000194832.1\|4165663_4167424_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_000642852.1\|4167553_4168246_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_000057158.1\|4168444_4169533_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8
WP_000445240.1\|4169603_4170887_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000904922.1\|4171142_4171715_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_064767240.1\|4171774_4172215_+\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	7.1e-41	55.6
WP_001486917.1\|4172255_4172738_+\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	7.5e-28	44.7
WP_000072165.1\|4172737_4173352_+\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	2.5e-60	60.5
WP_001554039.1\|4173358_4174639_-	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	7.8e-40	43.8
WP_000138756.1\|4174641_4175220_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_001219098.1\|4175212_4176316_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.4e-106	55.2
WP_000859111.1\|4176306_4176654_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
WP_000148266.1\|4176708_4177305_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.2
WP_000808007.1\|4177301_4178456_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.9e-85	47.6
WP_012602373.1\|4178443_4178659_-	membrane protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000458387.1\|4178655_4179540_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_000016538.1\|4179539_4182491_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.8e-86	29.9
WP_001202894.1\|4182566_4182725_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084213.1\|4182648_4182984_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000110114.1\|4183081_4183363_-	hypothetical protein	NA	NA	NA	NA
WP_000034294.1\|4183365_4183887_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
WP_000729834.1\|4183886_4185314_-\|tail	tail protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_012602372.1\|4185303_4185558_-	hypothetical protein	NA	NA	NA	NA
WP_001101804.1\|4185554_4186019_-	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000271668.1\|4186018_4186465_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_000537457.1\|4186466_4186805_-	DUF2190 family protein	NA	NA	NA	NA
WP_001286908.1\|4186814_4187768_-	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_001273074.1\|4187782_4188898_-	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
WP_000135514.1\|4189112_4189571_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_000117548.1\|4189573_4190395_-\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	1.8e-98	61.9
WP_000090684.1\|4190375_4191872_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	9.7e-167	59.0
WP_000167500.1\|4191871_4193467_-	hypothetical protein	A4JWJ4	Burkholderia_virus	6.5e-185	62.8
WP_000124060.1\|4193463_4194009_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
4193544:4193559	attL	NA	NA	NA	NA
WP_000227701.1\|4194008_4194320_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000175099.1\|4194319_4194646_-	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	48.6
WP_000264665.1\|4194642_4195293_-	hypothetical protein	J9SVN7	Pseudomonas_phage	2.8e-09	32.9
WP_001104440.1\|4195276_4196017_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000793146.1\|4196019_4196370_-	membrane protein	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_000194951.1\|4196500_4197229_+	hypothetical protein	NA	NA	NA	NA
WP_000972294.1\|4197204_4197609_-	hypothetical protein	NA	NA	NA	NA
WP_001069611.1\|4197607_4197823_+	hypothetical protein	NA	NA	NA	NA
WP_000783854.1\|4198013_4198778_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.2e-100	64.4
WP_000031013.1\|4198894_4199251_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000123378.1\|4199344_4199533_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_000047759.1\|4199585_4199894_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	2.7e-23	55.9
WP_000533817.1\|4199904_4200825_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	1.6e-74	56.2
WP_001095645.1\|4200824_4201142_+	hypothetical protein	NA	NA	NA	NA
WP_000186588.1\|4201157_4202927_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	1.5e-227	69.4
WP_000960679.1\|4202937_4204104_+	AAA family ATPase	A4JWN1	Burkholderia_virus	2.2e-121	59.4
WP_000843446.1\|4204106_4204376_+	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|4204403_4204934_+	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_000632576.1\|4205222_4205495_+	hypothetical protein	NA	NA	NA	NA
WP_001295929.1\|4205504_4205801_+	hypothetical protein	NA	NA	NA	NA
WP_000763554.1\|4205815_4206031_+	hypothetical protein	NA	NA	NA	NA
WP_000132039.1\|4206027_4206711_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-32	36.1
WP_000631813.1\|4206707_4206938_+	hypothetical protein	NA	NA	NA	NA
WP_000206212.1\|4206927_4207134_+	hypothetical protein	NA	NA	NA	NA
WP_001170114.1\|4207135_4207585_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	6.1e-24	45.1
WP_001281701.1\|4207556_4207946_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2
4212865:4212880	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4419272 : 4464981

Enterobacteria_phage(56.0%)

tRNA,tail,holin,head,terminase,capsid,integrase,portal,lysis

attL 4417590:4417604|attR 4446184:4446198

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4417590:4417604	attL	NA	NA	NA	NA
WP_001295972.1\|4419272_4420379_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|4420432_4420894_-	phosphatase NudJ	NA	NA	NA	NA
WP_001248677.1\|4420903_4421557_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444487.1\|4421728_4422979_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_000741335.1\|4423092_4424235_-\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_000088653.1\|4424224_4424461_-	excisionase	NA	NA	NA	NA
WP_000490213.1\|4424600_4424840_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000002139.1\|4424823_4425150_-	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000763374.1\|4425149_4425371_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_021533932.1\|4425469_4425751_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000548516.1\|4425761_4425953_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_000149537.1\|4425925_4426108_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000186848.1\|4426104_4426785_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000100847.1\|4426781_4427567_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995418.1\|4427572_4427869_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.9e-48	98.0
WP_000233576.1\|4427944_4428151_-	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000858975.1\|4428746_4429436_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_001067458.1\|4429540_4429771_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_001182900.1\|4429840_4430380_+	hypothetical protein	K7PJT7	Enterobacteria_phage	2.6e-61	67.0
WP_001435464.1\|4430466_4431396_+	replication protein	A0A0M5M7Y1	Salmonella_phage	6.1e-111	64.1
WP_000788794.1\|4431392_4432094_+	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	1.5e-125	97.0
WP_022645049.1\|4432343_4436609_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000700202.1\|4436645_4437689_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_072147164.1\|4438038_4438140_+	hypothetical protein	NA	NA	NA	NA
WP_001053005.1\|4438136_4438592_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.6e-59	66.9
WP_000224914.1\|4438591_4438762_+	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_000774479.1\|4438754_4439045_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_001099488.1\|4439041_4439404_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-59	95.7
WP_000971096.1\|4439400_4439541_+	YlcG family protein	K7PHH3	Enterobacteria_phage	8.5e-09	68.9
WP_001097224.1\|4439537_4440227_+	antiterminator Q	I6PDF8	Cronobacter_phage	4.9e-57	48.5
WP_000544528.1\|4440548_4440854_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001180486.1\|4440840_4441317_+	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	7.3e-84	94.9
WP_001228695.1\|4441533_4441716_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001298464.1\|4441806_4442100_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_000830178.1\|4442580_4442907_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000881610.1\|4443113_4443296_+	hypothetical protein	NA	NA	NA	NA
WP_000453620.1\|4443859_4444405_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	98.3
WP_001027261.1\|4444379_4446305_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
4446184:4446198	attR	NA	NA	NA	NA
WP_000198149.1\|4446301_4446508_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001295977.1\|4446504_4448106_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	98.9
WP_000123268.1\|4448086_4449406_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.1e-230	97.7
WP_001295978.1\|4449415_4449748_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000063293.1\|4449803_4450829_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
WP_000158908.1\|4450870_4451269_+	DNA packaging protein from bacteriophage origin	A0A0K2FIR1	Enterobacteria_phage	1.0e-62	98.5
WP_000753018.1\|4451280_4451634_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_000985120.1\|4451645_4452224_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	92.7
WP_000683150.1\|4452220_4452616_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.9e-70	98.5
WP_001295979.1\|4452623_4453364_+\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	1.6e-130	98.0
WP_000479203.1\|4453379_4453802_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	94.3
WP_000459457.1\|4453783_4454218_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840216.1\|4454210_4456772_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	98.4
WP_000847375.1\|4456768_4457098_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
WP_001152626.1\|4457097_4457796_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.1e-134	99.6
WP_023146277.1\|4457800_4458544_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_023149564.1\|4458480_4459083_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-88	85.6
WP_001531667.1\|4459143_4462626_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_000290538.1\|4462684_4464706_+	hypothetical protein	A0A0E3M0V5	Enterobacteria_phage	7.2e-181	72.3
WP_000654172.1\|4464702_4464981_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4

DBSCAN-SWA_11

4602942 : 4672657

Stx2-converting_phage(25.0%)

transposase,protease,tail,holin,head,terminase,capsid,integrase,portal

attL 4599116:4599130|attR 4605026:4605040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4599116:4599130	attL	NA	NA	NA	NA
WP_000113700.1\|4602942_4604073_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	3.4e-103	51.4
WP_000113189.1\|4604050_4604299_-	excisionase	NA	NA	NA	NA
WP_016230610.1\|4604363_4606835_-	exonuclease	A0A192Y6E0	Salmonella_phage	5.7e-55	56.0
4605026:4605040	attR	NA	NA	NA	NA
WP_001090200.1\|4606927_4607119_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449179.1\|4607115_4607304_-	hypothetical protein	NA	NA	NA	NA
WP_023142248.1\|4607653_4607821_+	hypothetical protein	NA	NA	NA	NA
WP_001171951.1\|4607869_4608088_-	hypothetical protein	NA	NA	NA	NA
WP_000379589.1\|4608247_4608403_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_000103687.1\|4608675_4609392_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.7e-52	42.0
WP_000471549.1\|4609441_4609657_+	transcriptional regulator	NA	NA	NA	NA
WP_000693845.1\|4609653_4610079_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000095675.1\|4610101_4611064_+	DNA-binding protein	S5FM81	Shigella_phage	1.4e-70	56.4
WP_000788950.1\|4611070_4611817_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_000450998.1\|4611838_4612609_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_001151161.1\|4612624_4613050_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
WP_000150294.1\|4613224_4613890_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_000018429.1\|4614070_4614283_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_001329966.1\|4614450_4614723_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_001265085.1\|4614724_4615780_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
WP_000140014.1\|4615780_4616161_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.9e-35	64.5
WP_001513213.1\|4616157_4616979_+	antitermination protein	K7P7B9	Enterobacteria_phage	1.7e-80	60.1
WP_000917751.1\|4617205_4617403_+	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
WP_000024331.1\|4617554_4618604_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.4e-198	95.4
WP_023142244.1\|4619405_4619537_+	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	1.1e-05	100.0
WP_000871291.1\|4619817_4620153_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_016230612.1\|4620413_4622267_+	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
WP_000284510.1\|4622417_4622633_+\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_000193278.1\|4622637_4622982_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000369850.1\|4622947_4623220_-	hypothetical protein	NA	NA	NA	NA
WP_000992071.1\|4623325_4623859_+	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_032140280.1\|4624413_4624500_+	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|4624721_4624907_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_000736382.1\|4624992_4625208_+	hypothetical protein	NA	NA	NA	NA
WP_000095741.1\|4625406_4625607_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000829185.1\|4625648_4626014_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_000958366.1\|4626304_4626868_+\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.6e-82	92.0
WP_001296023.1\|4626864_4628526_+\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.7
WP_000173031.1\|4628589_4630527_+\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
WP_001063099.1\|4630571_4630793_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000267294.1\|4630738_4633324_+\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	100.0
WP_000125990.1\|4633320_4633647_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001007905.1\|4633656_4634007_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573391.1\|4634003_4634450_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133388.1\|4634446_4634791_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275441.1\|4634857_4635574_+\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000710949.1\|4635588_4635963_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001513217.1\|4636058_4636268_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000212991.1\|4636315_4639558_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	91.6
WP_000807937.1\|4639550_4639892_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	9.0e-60	95.6
WP_001296027.1\|4639891_4640590_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	5.8e-130	97.4
WP_000194730.1\|4640600_4641344_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	4.3e-147	97.6
WP_061089814.1\|4641289_4641922_+\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.0e-101	97.6
WP_000514710.1\|4642264_4645738_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.7
WP_001298859.1\|4646378_4647920_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001016257.1\|4647934_4648681_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_071550361.1\|4649142_4652049_+	hypothetical protein	A0A0F7LDR4	Escherichia_phage	1.1e-118	45.9
WP_001164137.1\|4652064_4652592_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	8.4e-73	77.7
WP_000972097.1\|4652622_4653156_-\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.8e-67	70.1
WP_022645053.1\|4653157_4653943_-	hypothetical protein	Q858V4	Yersinia_virus	1.3e-109	77.8
WP_001421220.1\|4654170_4654353_+	recombinase family protein	A0A0C4UR34	Shigella_phage	1.4e-24	95.0
WP_000240999.1\|4654551_4655220_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937495.1\|4655276_4655546_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_001348267.1\|4655957_4656515_-	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	4.2e-30	63.8
WP_001296031.1\|4656511_4656787_-	hypothetical protein	S5MQL6	Escherichia_phage	1.1e-10	52.9
WP_000443082.1\|4657162_4657969_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209513.1\|4657968_4659162_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001195273.1\|4659173_4660532_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.9e-37	41.2
WP_000763535.1\|4660535_4662131_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194644.1\|4662130_4663693_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|4663784_4663829_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285702.1\|4663966_4664848_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|4664844_4665465_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_088251377.1\|4665492_4667388_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001291206.1\|4667600_4668476_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_023141019.1\|4668681_4669668_+	hypothetical protein	NA	NA	NA	NA
WP_001000715.1\|4669677_4669986_+	hypothetical protein	NA	NA	NA	NA
WP_001278898.1\|4670042_4670633_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559273.1\|4670629_4671388_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.4
WP_000422062.1\|4671607_4672657_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021937

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3743 : 38783

Escherichia_phage(33.33%)

transposase,integrase

attL 526:585|attR 26267:35419

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
526:585	attL	NA	NA	NA	NA
WP_001389365.1\|3743_4508_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|4734_5040_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|5050_6256_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|6411_6615_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|6742_7582_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|7575_7923_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000503573.1\|8128_8917_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_001389366.1\|9047_9521_-	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000845048.1\|9678_10692_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|10894_11245_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001553864.1\|11370_11700_+	transposon Tn21 resolvase	M9Q1K0	Clostridium_phage	6.9e-09	55.6
WP_001067855.1\|11590_12295_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000978817.1\|12665_13127_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	3.6e-19	37.1
WP_001067855.1\|14556_15261_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001553864.1\|15151_15481_-	transposon Tn21 resolvase	M9Q1K0	Clostridium_phage	6.9e-09	55.6
WP_000454193.1\|15606_15957_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|16159_17173_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001389366.1\|17330_17804_+	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000503573.1\|17934_18723_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_000679427.1\|18928_19276_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|19269_20109_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376616.1\|20236_20440_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|20595_21801_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|21811_22117_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|22343_23108_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001137892.1\|23600_24185_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|24184_25423_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|25419_26325_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000118029.1\|29343_31230_+	FTR1 family iron permease	NA	NA	NA	NA
WP_000178050.1\|31270_31798_+	iron transporter	NA	NA	NA	NA
WP_000119836.1\|31901_33281_+	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_000964653.1\|33283_34567_+	ABC transporter permease	NA	NA	NA	NA
WP_000729220.1\|34556_35687_+	ABC transporter permease	NA	NA	NA	NA
26267:35419	attR	NA	NA	NA	NA
WP_000117262.1\|35691_36387_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-29	38.9
WP_001267177.1\|36373_36859_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_000874189.1\|36883_37369_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|38078_38783_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

64534 : 113030

Escherichia_phage(26.32%)

transposase,protease,integrase

attL 69590:69604|attR 97944:97958

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000080195.1\|64534_66148_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|66178_66529_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|66525_66951_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_031325939.1\|67012_68164_+	hypothetical protein	NA	NA	NA	NA
WP_000151784.1\|68197_68710_-	hypothetical protein	NA	NA	NA	NA
WP_000813634.1\|69255_69474_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_001159868.1\|69475_69781_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
69590:69604	attL	NA	NA	NA	NA
WP_000016982.1\|69781_70588_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
WP_000852146.1\|71361_72117_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	3.8e-143	100.0
WP_000772446.1\|72704_73871_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
WP_000817036.1\|73870_74842_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-174	99.4
WP_001348615.1\|75708_76611_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000086185.1\|76995_77679_+	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	36.9
WP_001104873.1\|77679_77901_+	hypothetical protein	NA	NA	NA	NA
WP_000274437.1\|77914_78349_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001671341.1\|79715_80018_+	antirestriction protein	NA	NA	NA	NA
WP_000271753.1\|80064_80487_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001027516.1\|80483_80675_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|81468_82173_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002063889.1\|83366_83909_-	AAA family ATPase	NA	NA	NA	NA
WP_000557452.1\|83921_84782_-	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA
WP_001067855.1\|84888_85593_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_127524347.1\|85645_88354_+	AAA family ATPase	NA	NA	NA	NA
WP_000205725.1\|88373_89120_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	2.4e-09	30.8
WP_000704528.1\|89178_90039_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	6.7e-11	23.8
WP_000139321.1\|90141_90702_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_001309245.1\|90830_91043_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_001233838.1\|91287_91749_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	4.2e-20	37.1
WP_001298565.1\|91794_92004_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_000766805.1\|92041_92632_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_000083819.1\|92871_93132_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001365705.1\|93356_93431_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_000130647.1\|93423_94281_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_000616807.1\|95219_95873_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|95965_96223_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|96155_96557_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001553819.1\|96693_99591_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
97944:97958	attR	NA	NA	NA	NA
WP_000509965.1\|99685_100291_+	DNA invertase	A0A1S5Y2X8	uncultured_archaeal_virus	9.4e-20	35.3
WP_001351729.1\|101067_101460_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|101597_102482_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|102513_103713_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000470728.1\|103791_104469_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_032140899.1\|104500_104743_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|106364_107069_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_063840321.1\|107212_107767_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|107897_108728_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_001067855.1\|109359_110064_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000978817.1\|110434_110896_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	3.6e-19	37.1
WP_001067855.1\|112325_113030_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_3

133306 : 144368

Erwinia_phage(20.0%)

transposase,integrase

attL 125692:125751|attR 149619:157864

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
125692:125751	attL	NA	NA	NA	NA
WP_001389366.1\|133306_133780_-	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000845048.1\|133937_134951_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|135153_135504_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001553864.1\|135629_135959_+	transposon Tn21 resolvase	M9Q1K0	Clostridium_phage	6.9e-09	55.6
WP_001067855.1\|135849_136554_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071550439.1\|137983_138505_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	2.4e-19	37.1
WP_001067855.1\|138815_139520_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001553864.1\|139410_139740_-	transposon Tn21 resolvase	M9Q1K0	Clostridium_phage	6.9e-09	55.6
WP_000454193.1\|139865_140216_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|140418_141432_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001389366.1\|141589_142063_+	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000503573.1\|142193_142982_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_000679427.1\|143187_143535_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|143528_144368_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
149619:157864	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021935

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021937

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection