CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP021957	Klebsiella pneumoniae strain AR_0107 plasmid unitig_3j2_linear_pilon, complete sequence	0 crisprs	DEDDh	1
NZ_CP021955	Klebsiella pneumoniae strain AR_0107 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,WYL,DinG	12
NZ_CP021956	Klebsiella pneumoniae strain AR_0107 plasmid unitig_1_pilon, complete sequence	0 crisprs	DEDDh	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8500 : 64169

Klebsiella_phage(88.0%)

terminase,portal,head,capsid,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032408985.1\|8500_10423_+	protelomerase	Q6UAV6	Klebsiella_phage	0.0e+00	94.8
WP_064147494.1\|10477_11257_-	hypothetical protein	Q6UAV5	Klebsiella_phage	2.0e-118	82.4
WP_064147495.1\|11253_11484_-	hypothetical protein	NA	NA	NA	NA
WP_032413547.1\|11480_11645_-	host cell division inhibitor Icd-like protein	Q6UAV3	Klebsiella_phage	2.8e-19	96.3
WP_077266984.1\|11696_11864_-	hypothetical protein	NA	NA	NA	NA
WP_047722522.1\|12446_12797_-	hypothetical protein	O64343	Escherichia_phage	8.6e-50	77.6
WP_047722521.1\|12793_13090_-	hypothetical protein	NA	NA	NA	NA
WP_088296450.1\|13082_17087_-	origin of replication binding family protein	A0A2I6TD01	Escherichia_phage	0.0e+00	81.3
WP_048292304.1\|17337_17946_-	XRE family transcriptional regulator	Q6UAU6	Klebsiella_phage	1.3e-104	92.6
WP_032408972.1\|18026_18236_+	hypothetical protein	Q6UAU5	Klebsiella_phage	7.7e-30	92.8
WP_032408971.1\|18225_18963_+	phage antitermination Q family protein	Q6UAU4	Klebsiella_phage	2.2e-119	84.5
WP_032408969.1\|19374_19983_+	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	1.7e-98	88.5
WP_023339397.1\|20583_20829_+	hypothetical protein	G8C7U9	Escherichia_phage	5.1e-25	83.1
WP_032408968.1\|20821_21148_+	hypothetical protein	Q6UAT7	Klebsiella_phage	3.9e-52	94.4
WP_023339395.1\|21168_21396_+	hypothetical protein	O64355	Escherichia_phage	2.8e-25	80.3
WP_023339393.1\|21792_22080_-	helix-turn-helix transcriptional regulator	Q6UAT4	Klebsiella_phage	1.7e-43	96.8
WP_023339392.1\|22079_22388_-	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	3.9e-46	94.2
WP_023339391.1\|22558_22780_+	hypothetical protein	O64358	Escherichia_phage	3.0e-32	90.4
WP_032408967.1\|22791_23019_+	hypothetical protein	Q6UAT1	Klebsiella_phage	1.6e-28	84.0
WP_023339389.1\|23289_24351_+	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	1.6e-171	93.2
WP_023339388.1\|24409_24721_+	hypothetical protein	Q6UAS9	Klebsiella_phage	6.3e-44	89.1
WP_040118544.1\|24717_25209_+	hypothetical protein	Q6UAS8	Klebsiella_phage	1.9e-82	90.8
WP_040118545.1\|25225_25702_+	hypothetical protein	Q6UAS7	Klebsiella_phage	1.7e-61	79.7
WP_117037470.1\|25649_25844_+	hypothetical protein	Q6UAS6	Klebsiella_phage	1.5e-19	89.5
WP_032408961.1\|25955_26255_+	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	3.0e-51	96.0
WP_023339408.1\|26424_27501_+	hypothetical protein	Q6UAS3	Klebsiella_phage	9.8e-36	37.4
WP_032414214.1\|27484_27847_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	7.8e-62	92.5
WP_088296451.1\|27843_28128_+	hypothetical protein	Q6UAS1	Klebsiella_phage	2.4e-05	37.5
WP_023339406.1\|28124_28556_+	hypothetical protein	Q6UAS0	Klebsiella_phage	2.9e-39	59.9
WP_088296452.1\|29058_29493_+\|terminase	terminase	Q6UAY1	Klebsiella_phage	4.8e-74	96.5
WP_088296453.1\|29527_31237_+\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	0.0e+00	94.9
WP_023339403.1\|31409_32669_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.5e-224	90.5
WP_014907815.1\|32705_33626_+	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
WP_032408953.1\|33703_34990_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	2.4e-206	85.0
WP_047722540.1\|35246_35444_+	hypothetical protein	Q6UAX5	Klebsiella_phage	1.8e-20	78.0
WP_020317538.1\|35424_35742_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_014228910.1\|35738_36077_+\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_017880258.1\|36057_36447_+	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_017898997.1\|36443_36845_+	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
WP_014228913.1\|36876_37338_+\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_014228914.1\|37395_37761_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_061112891.1\|37993_41350_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.2
WP_017898999.1\|41349_41688_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
WP_020803197.1\|41684_42440_+\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	6.7e-124	80.1
WP_039814703.1\|42441_43152_+	peptidase P60	Q6UAW4	Klebsiella_phage	6.7e-134	89.8
WP_020803186.1\|43198_44026_+	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	2.3e-08	44.0
WP_032447254.1\|44042_44636_+\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	3.7e-85	80.7
WP_088296454.1\|44698_57232_+	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	46.3
WP_071042643.1\|57293_58793_+\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.9e-146	73.3
WP_023339380.1\|58871_59837_-	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	1.5e-155	86.9
WP_023339381.1\|59839_61003_-	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	2.1e-225	98.4
WP_023339381.1\|62037_63201_+	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	2.1e-225	98.4
WP_023339380.1\|63203_64169_+	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	1.5e-155	86.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021955

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021955_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021955_1

730004-730089

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021955_1

>merge|NZ_CP021955|1|730004-730089|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NZ_CP021955|1|1|730004-730089|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021955.1\|WP_088296052.1\|739455_740958_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP021955.1\|WP_002888337.1\|727548_728247_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP021955.1\|WP_002888321.1\|719709_720558_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP021955.1\|WP_021441189.1\|731730_732270_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP021955.1\|WP_002888329.1\|722755_724042_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP021955.1\|WP_002888373.1\|743989_744757_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP021955.1\|WP_048290254.1\|733004_735911_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP021955.1\|WP_002888345.1\|730186_731551_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP021955.1\|WP_002888332.1\|726688_727516_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP021955.1\|WP_004145972.1\|743015_743861_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP021955.1\|WP_002888348.1\|732332_732992_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP021955.1\|WP_002888323.1\|720562_720940_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP021955.1\|WP_011977646.1\|740968_742678_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP021955.1\|WP_004192048.1\|728236_729862_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP021955.1\|WP_032103829.1\|724096_726445_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP021955.1\|WP_002888324.1\|720942_721764_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP021955.1\|WP_002888320.1\|718977_719457_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP021955.1\|WP_021441191.1\|736098_738456_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP021955.1\|WP_002888327.1\|721760_722750_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP021955.1\|WP_088296051.1\|738622_739318_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181

Protein	Function_ID	Function_description	E-value
NZ_CP021955.1\|WP_088296052.1\|739455_740958_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP021955.1\|WP_002888337.1\|727548_728247_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP021955.1\|WP_002888321.1\|719709_720558_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP021955.1\|WP_021441189.1\|731730_732270_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	6.20047e-83
NZ_CP021955.1\|WP_002888329.1\|722755_724042_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP021955.1\|WP_002888373.1\|743989_744757_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP021955.1\|WP_048290254.1\|733004_735911_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP021955.1\|WP_002888345.1\|730186_731551_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP021955.1\|WP_002888332.1\|726688_727516_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP021955.1\|WP_004145972.1\|743015_743861_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP021955.1\|WP_002888348.1\|732332_732992_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP021955.1\|WP_002888323.1\|720562_720940_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP021955.1\|WP_011977646.1\|740968_742678_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP021955.1\|WP_004192048.1\|728236_729862_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	7.63459e-173
NZ_CP021955.1\|WP_032103829.1\|724096_726445_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP021955.1\|WP_002888324.1\|720942_721764_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP021955.1\|WP_002888320.1\|718977_719457_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP021955.1\|WP_021441191.1\|736098_738456_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP021955.1\|WP_002888327.1\|721760_722750_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP021955.1\|WP_088296051.1\|738622_739318_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	2.61755e-179

>NZ_CP021955.1|WP_004192048.1|728236_729862_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP021955.1|WP_002888337.1|727548_728247_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP021955.1|WP_002888332.1|726688_727516_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP021955.1|WP_032103829.1|724096_726445_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSNTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP021955.1|WP_002888329.1|722755_724042_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP021955.1|WP_002888327.1|721760_722750_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP021955.1|WP_002888324.1|720942_721764_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP021955.1|WP_002888323.1|720562_720940_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP021955.1|WP_002888321.1|719709_720558_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP021955.1|WP_002888320.1|718977_719457_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP021955.1|WP_002888345.1|730186_731551_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP021955.1|WP_021441189.1|731730_732270_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQAGLISRQAQGEAMRRCLLCDEPAHACARSRRHDTGLVVARVEQMIDAWFARD
>NZ_CP021955.1|WP_002888348.1|732332_732992_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP021955.1|WP_048290254.1|733004_735911_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESKRQQVMDALAQAVWRLDALRLIVVTHQ
>NZ_CP021955.1|WP_021441191.1|736098_738456_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWSQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRTQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP021955.1|WP_088296051.1|738622_739318_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPTHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADNMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP021955.1|WP_088296052.1|739455_740958_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDKITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISNGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP021955.1|WP_011977646.1|740968_742678_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP021955.1|WP_004145972.1|743015_743861_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP021955.1|WP_002888373.1|743989_744757_+|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1204796 : 1251458

Salmonella_phage(17.24%)

terminase,integrase,lysis,tRNA,head

attL 1207680:1207726|attR 1254448:1254494

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004143010.1\|1204796_1206182_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
WP_004143016.1\|1206227_1206440_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143017.1\|1206441_1207308_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
1207680:1207726	attL	NA	NA	NA	NA
WP_148868898.1\|1207739_1208576_-\|integrase	tyrosine-type recombinase/integrase	G8C7S0	Escherichia_phage	2.3e-141	87.1
WP_071531921.1\|1208779_1209115_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012542647.1\|1209127_1209367_-	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	2.4e-11	47.4
WP_088296065.1\|1209366_1209585_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	4.4e-12	51.4
WP_004146321.1\|1209586_1209805_-	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	2.1e-09	47.2
WP_088296066.1\|1209801_1210854_-	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	8.4e-141	63.7
WP_088296067.1\|1210850_1211507_-	DNA methyltransferase	G8C7S6	Escherichia_phage	1.0e-112	87.0
WP_017898874.1\|1211503_1211932_-	hypothetical protein	M9NYX4	Enterobacteria_phage	3.4e-64	81.0
WP_088296068.1\|1211928_1212609_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	5.1e-123	92.9
WP_064182149.1\|1212605_1213451_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	9.0e-69	59.2
WP_088296069.1\|1213466_1213751_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.5e-39	79.8
WP_077266121.1\|1213821_1214256_-	hypothetical protein	G0YQE7	Erwinia_phage	3.1e-41	55.1
WP_074177489.1\|1214245_1214470_-	cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	3.1e-29	90.9
WP_088296070.1\|1214906_1215110_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.1e-20	74.6
WP_032426564.1\|1215148_1216222_-	AAA family ATPase	E7C9Q8	Salmonella_phage	3.8e-181	86.8
WP_004178801.1\|1216444_1216564_-	hypothetical protein	NA	NA	NA	NA
WP_004191591.1\|1216624_1217284_-	helix-turn-helix domain-containing protein	K7P7K3	Enterobacteria_phage	8.3e-70	62.4
WP_004191589.1\|1217392_1217611_+	helix-turn-helix transcriptional regulator	A0A1P8DTF8	Proteus_phage	1.4e-13	50.7
WP_016530548.1\|1217651_1217936_+	bacteriophage CII family protein	K7PHN8	Enterobacterial_phage	2.2e-19	56.2
WP_088296071.1\|1217970_1218768_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.5e-89	71.5
WP_088296072.1\|1218764_1219637_+	replication protein	K7PGT1	Enterobacteria_phage	9.0e-56	46.9
WP_088296418.1\|1219633_1220410_+	replication protein	A0A193GYX1	Enterobacter_phage	4.2e-97	66.9
WP_032444948.1\|1220409_1220712_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_088296073.1\|1220708_1221140_+	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.2e-30	65.4
WP_088296074.1\|1221808_1222168_+	hypothetical protein	K7PH64	Enterobacterial_phage	3.2e-07	38.4
WP_088296075.1\|1222164_1222452_+	hypothetical protein	A0A0P0ZCX1	Stx2-converting_phage	5.6e-15	43.8
WP_088296076.1\|1222441_1222675_+	hypothetical protein	NA	NA	NA	NA
WP_088296077.1\|1222720_1222978_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	7.5e-27	76.6
WP_020805077.1\|1223179_1223647_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	5.7e-33	46.5
WP_004196828.1\|1223627_1223798_+	hypothetical protein	G8C7V4	Escherichia_phage	3.3e-15	73.2
WP_088296078.1\|1223790_1224429_+	hypothetical protein	H6WRY9	Salmonella_phage	9.2e-74	69.3
WP_088296079.1\|1224425_1224650_+	protein ninY	Q76H69	Enterobacteria_phage	3.0e-24	63.5
WP_009483890.1\|1224646_1224787_+	YlcG family protein	NA	NA	NA	NA
WP_088296080.1\|1224783_1225473_+	antiterminator	I6PDF8	Cronobacter_phage	1.9e-56	51.5
WP_032438107.1\|1226006_1226255_+\|lysis	lysis protein	NA	NA	NA	NA
WP_088296081.1\|1226257_1226788_+	lysozyme	G9L6J6	Escherichia_phage	5.4e-80	79.7
WP_088296082.1\|1226784_1227174_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	6.3e-25	50.0
WP_088296083.1\|1227632_1228268_+	hypothetical protein	I6S676	Salmonella_phage	2.7e-102	81.1
WP_032453643.1\|1228298_1228784_+	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	2.8e-67	79.5
WP_019725075.1\|1228785_1230462_+\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	1.1e-248	74.1
WP_088296084.1\|1230462_1231983_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	1.1e-104	45.1
WP_088296085.1\|1232035_1232728_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	3.7e-60	50.0
WP_088296086.1\|1232738_1233002_+	hypothetical protein	NA	NA	NA	NA
WP_088296087.1\|1233071_1234241_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	9.0e-59	37.5
WP_088296088.1\|1234242_1234725_+	hypothetical protein	A0A219YBF2	Aeromonas_phage	1.2e-33	51.6
WP_001518132.1\|1234724_1235762_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	1.7e-85	50.6
WP_088296089.1\|1235763_1236090_+	hypothetical protein	H9C0V9	Aeromonas_phage	2.1e-10	42.5
WP_088296090.1\|1236089_1236533_+	DUF4054 domain-containing protein	A0A1X9SF97	Acinetobacter_phage	8.2e-13	38.2
WP_032453637.1\|1236535_1237099_+	hypothetical protein	A0A190XCA2	Acinetobacter_phage	5.3e-17	35.6
WP_050008824.1\|1237095_1237464_+	hypothetical protein	Q6UJ26	Burkholderia_virus	1.9e-07	30.6
WP_032693632.1\|1237445_1237997_+	hypothetical protein	NA	NA	NA	NA
WP_088296091.1\|1238000_1239482_+	DUF3383 domain-containing protein	Q2NPD0	Xanthomonas_phage	1.5e-58	34.0
WP_049141278.1\|1239481_1239925_+	hypothetical protein	NA	NA	NA	NA
WP_049141276.1\|1239986_1240463_+	hypothetical protein	A0A068CGG2	Acinetobacter_phage	7.2e-07	31.8
WP_088296092.1\|1240667_1242605_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	1.7e-38	56.5
WP_065520796.1\|1242608_1243448_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	2.6e-28	33.2
WP_019725008.1\|1243449_1243755_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	3.6e-20	48.5
WP_088296093.1\|1243751_1244621_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	7.9e-28	29.0
WP_064143292.1\|1244610_1245198_+	hypothetical protein	A0A077KAY0	Edwardsiella_phage	6.6e-26	37.2
WP_088296094.1\|1245197_1245986_+	hypothetical protein	NA	NA	NA	NA
WP_077266083.1\|1245999_1246353_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_064484068.1\|1246478_1246646_+	Arc family DNA-binding protein	G9L6D7	Escherichia_phage	7.3e-15	69.8
WP_157684455.1\|1246632_1247346_+	hypothetical protein	H6WRU8	Salmonella_phage	7.6e-69	58.0
WP_074189302.1\|1247429_1248167_+	transcriptional regulator	A0A0P0IDX3	Acinetobacter_phage	1.5e-22	46.6
WP_001518114.1\|1248236_1248593_+	hypothetical protein	NA	NA	NA	NA
WP_019725016.1\|1248600_1249833_+	hypothetical protein	A0A077KGW9	Edwardsiella_phage	6.7e-105	50.7
WP_029497465.1\|1249825_1250413_+	DUF2612 domain-containing protein	A0A077K9U8	Edwardsiella_phage	2.9e-34	43.4
WP_088296096.1\|1250414_1251458_+	hypothetical protein	A0A077KC23	Edwardsiella_phage	4.4e-17	41.5
1254448:1254494	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1661197 : 1739880

Salmonella_phage(61.4%)

plate,terminase,capsid,integrase,lysis,tRNA,head,portal,tail,protease

attL 1658750:1658765|attR 1710702:1710717

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1658750:1658765	attL	NA	NA	NA	NA
WP_000290950.1\|1661197_1662250_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_000900883.1\|1662438_1662630_-	hypothetical protein	A0A0R6PIH8	Moraxella_phage	6.8e-09	65.9
WP_001346406.1\|1662645_1663215_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	3.2e-38	41.9
WP_000188450.1\|1663360_1663564_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|1663628_1664138_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956187.1\|1664145_1664442_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	2.2e-22	92.3
WP_001747374.1\|1664559_1664901_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	6.6e-55	97.3
WP_001244228.1\|1664968_1665202_+	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-33	98.7
WP_000752613.1\|1665201_1665429_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_000145290.1\|1665425_1665728_+	DUF3850 domain-containing protein	A0A0A8WI22	Clostridium_phage	9.8e-10	42.1
WP_032291301.1\|1665724_1666582_+	DNA adenine methylase	E5G6L8	Salmonella_phage	4.3e-159	96.5
WP_038431106.1\|1666578_1668993_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.8
WP_001154434.1\|1669146_1669335_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_016529212.1\|1669345_1669579_+	DinI family protein	A0A1S6L014	Salmonella_phage	1.1e-32	89.6
WP_016529211.1\|1669865_1670084_+	hypothetical protein	NA	NA	NA	NA
WP_016529210.1\|1670083_1670926_+	hypothetical protein	A0A0M4R2T6	Salmonella_phage	1.3e-59	48.5
WP_038431152.1\|1671127_1672780_+	NTPase	X2KLG0	Campylobacter_phage	2.1e-13	27.8
WP_038431107.1\|1672810_1673839_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	4.9e-170	86.7
WP_031591583.1\|1673838_1675605_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.1
WP_002895967.1\|1675747_1676581_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_032427925.1\|1676597_1677653_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	3.7e-181	93.4
WP_021563628.1\|1677656_1678307_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	1.5e-111	95.8
WP_000673530.1\|1678402_1678867_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.9e-76	89.0
WP_038431109.1\|1678866_1679070_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.0e-31	91.0
WP_000171568.1\|1679073_1679289_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_038431112.1\|1679269_1679785_+	lysozyme	E5G6N1	Salmonella_phage	1.8e-88	91.2
WP_038431114.1\|1679781_1680210_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.9e-59	91.5
WP_038431116.1\|1680305_1680737_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	2.2e-71	92.3
WP_031591600.1\|1680729_1681194_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	5.5e-60	83.6
WP_038431118.1\|1681281_1682793_+	hypothetical protein	NA	NA	NA	NA
WP_038430657.1\|1682919_1683498_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	3.0e-92	84.9
WP_000177580.1\|1683494_1683854_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	3.2e-52	87.4
WP_021532224.1\|1683840_1684749_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.2e-143	90.7
WP_001086820.1\|1684741_1685347_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	5.2e-111	92.5
WP_001174919.1\|1686750_1687191_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.5e-51	66.7
WP_001555895.1\|1687162_1687765_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	2.5e-97	89.5
WP_088296113.1\|1687764_1688310_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	9.3e-43	55.4
WP_001555853.1\|1688337_1688904_+	recombinase family protein	A0A1S6L009	Salmonella_phage	2.2e-87	84.8
WP_001555854.1\|1689046_1690219_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	4.6e-204	90.0
WP_001207660.1\|1690228_1690744_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_001281009.1\|1690798_1691101_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
WP_000763311.1\|1691115_1691235_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001282787.1\|1691227_1694305_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.0
WP_000980414.1\|1694301_1694787_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.8e-66	80.0
WP_021566199.1\|1694783_1695884_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	5.5e-175	87.7
WP_000972391.1\|1695974_1696193_+	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_004147745.1\|1696413_1698099_-	transporter	NA	NA	NA	NA
WP_002896351.1\|1698365_1698749_+	membrane protein	NA	NA	NA	NA
WP_002896352.1\|1698755_1699019_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_004179132.1\|1699221_1699509_+	YbjC family protein	NA	NA	NA	NA
WP_088296114.1\|1699492_1699978_+	hypothetical protein	NA	NA	NA	NA
WP_002896363.1\|1700092_1700995_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896365.1\|1701083_1701563_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896368.1\|1701911_1703024_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_088296421.1\|1703187_1704321_+	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.9e-30	34.9
WP_002896371.1\|1704331_1705285_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896372.1\|1705281_1706127_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896376.1\|1706184_1706673_+	DUF2593 family protein	NA	NA	NA	NA
WP_048290133.1\|1706714_1707842_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.8e-19	25.6
WP_002896380.1\|1707920_1708637_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896382.1\|1708633_1710106_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_004141917.1\|1711107_1711776_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
1710702:1710717	attR	NA	NA	NA	NA
WP_002896386.1\|1711775_1712492_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_002896390.1\|1712498_1713230_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896392.1\|1713250_1713979_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896394.1\|1714205_1714721_-	lipoprotein	NA	NA	NA	NA
WP_004176708.1\|1715599_1716739_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_004209681.1\|1716770_1717601_+	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_002896399.1\|1717597_1718611_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004209682.1\|1718698_1720141_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_032429901.1\|1720151_1721153_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_004176700.1\|1721191_1722910_-	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_048290134.1\|1723061_1723496_+	DoxX family protein	NA	NA	NA	NA
WP_004147771.1\|1723707_1724676_-	NADH oxidoreductase	NA	NA	NA	NA
WP_004176696.1\|1724686_1726339_-	hydroxylamine reductase	NA	NA	NA	NA
WP_038806830.1\|1726482_1727382_-	lysine exporter LysO family protein	NA	NA	NA	NA
WP_032429902.1\|1727497_1728193_-	aquaporin Z	NA	NA	NA	NA
WP_004176693.1\|1728612_1730271_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896440.1\|1730417_1731533_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_032429904.1\|1731529_1733470_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.9e-38	41.4
WP_002896516.1\|1733546_1733768_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|1734093_1734411_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|1734441_1736721_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|1736840_1737059_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002898014.1\|1737412_1738114_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_088296115.1\|1738158_1739880_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.2e-14	35.0

DBSCAN-SWA_3

1850359 : 1877175

Pectobacterium_phage(30.43%)

integrase,head,protease,tail

attL 1851305:1851318|attR 1856895:1856908

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898458.1\|1850359_1851019_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.2e-37	46.6
WP_032429929.1\|1851288_1852941_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
1851305:1851318	attL	NA	NA	NA	NA
WP_088296119.1\|1853216_1854245_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.2e-94	54.4
WP_004199480.1\|1854248_1854473_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	4.5e-20	68.1
WP_004141609.1\|1854682_1854868_-	hypothetical protein	H9C155	Pectobacterium_phage	8.1e-07	44.3
WP_088296121.1\|1854869_1855430_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.9e-49	59.5
WP_088296122.1\|1855429_1857571_-	hypothetical protein	H9C157	Pectobacterium_phage	1.1e-102	35.3
1856895:1856908	attR	NA	NA	NA	NA
WP_088296123.1\|1857603_1857888_-	hypothetical protein	NA	NA	NA	NA
WP_077269609.1\|1857931_1858165_-	hypothetical protein	NA	NA	NA	NA
WP_088296124.1\|1859136_1859523_-	helix-turn-helix domain-containing protein	A5VW98	Enterobacteria_phage	3.4e-15	57.8
WP_032427033.1\|1859603_1859798_+	transcriptional regulator	NA	NA	NA	NA
WP_088296125.1\|1859858_1860305_+	hypothetical protein	H9C162	Pectobacterium_phage	2.8e-29	54.7
WP_046387639.1\|1860388_1860547_+	hypothetical protein	NA	NA	NA	NA
WP_088296126.1\|1860549_1861542_+	replication protein RepO	A0A067ZIA1	Vibrio_phage	6.3e-29	46.1
WP_088296127.1\|1861538_1862927_+	AAA family ATPase	Q8HA30	Enterobacteria_phage	1.5e-105	47.3
WP_009308333.1\|1862965_1863616_+	hypothetical protein	NA	NA	NA	NA
WP_085802954.1\|1863619_1863853_+	hypothetical protein	NA	NA	NA	NA
WP_088296128.1\|1863998_1864589_+	adenine methylase	A0A0F6TJC3	Escherichia_coli_O157_typing_phage	5.1e-95	83.9
WP_009308338.1\|1864591_1864822_+	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	2.9e-06	38.7
WP_032427048.1\|1864818_1865448_+	hypothetical protein	NA	NA	NA	NA
WP_032427060.1\|1865465_1865726_+	hypothetical protein	NA	NA	NA	NA
WP_088296129.1\|1865722_1867573_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	4.5e-198	52.0
WP_088296130.1\|1867572_1867911_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.1e-44	81.1
WP_029499143.1\|1868092_1868284_+	hypothetical protein	NA	NA	NA	NA
WP_088296131.1\|1868352_1868946_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.9e-81	72.6
WP_071838911.1\|1868935_1869259_+	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	1.8e-25	55.8
WP_023279625.1\|1869246_1869603_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_088296132.1\|1869599_1869893_+	hypothetical protein	G8C7W3	Escherichia_phage	3.7e-30	70.1
WP_088296133.1\|1869926_1870451_+	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	1.6e-47	54.1
WP_088296134.1\|1870512_1870746_+	hypothetical protein	NA	NA	NA	NA
WP_009308351.1\|1870729_1870990_+	hypothetical protein	NA	NA	NA	NA
WP_004191060.1\|1870996_1871449_+	hypothetical protein	A3EYX3	Salmonella_phage	3.2e-49	66.4
WP_088296135.1\|1871533_1872928_+	hypothetical protein	A0A0E3JIA1	Rhodoferax_phage	5.3e-58	36.6
WP_080922666.1\|1872927_1874592_+\|head,tail	phage head-tail adapter protein	A0A221SAN2	Ralstonia_phage	3.1e-105	39.5
WP_029503969.1\|1874594_1874918_+	hypothetical protein	NA	NA	NA	NA
WP_088296136.1\|1874904_1875657_+	hypothetical protein	NA	NA	NA	NA
WP_088296137.1\|1875667_1876663_+	hypothetical protein	W6MW28	Pseudomonas_phage	2.7e-104	60.2
WP_004191050.1\|1876701_1877175_+	hypothetical protein	K4NYY6	Pseudomonas_phage	1.8e-26	46.3

DBSCAN-SWA_4

1881734 : 1891278

Pseudomonas_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088296140.1\|1881734_1884440_+	lytic transglycosylase domain-containing protein	K4NWI2	Pseudomonas_phage	4.1e-30	24.9
WP_088296141.1\|1884747_1886130_+	hypothetical protein	W6MVE3	Pseudomonas_phage	3.7e-27	28.1
WP_088296142.1\|1886129_1889054_+	hypothetical protein	W6MWW8	Pseudomonas_phage	3.7e-194	41.0
WP_133060675.1\|1889082_1889487_+	hypothetical protein	NA	NA	NA	NA
WP_071838248.1\|1889511_1889664_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	1.2e-13	81.6
WP_004199490.1\|1889994_1890210_+	hypothetical protein	A5LH82	Enterobacteria_phage	1.1e-12	61.0
WP_088296143.1\|1890211_1890751_+	lysozyme	H6WRZ4	Salmonella_phage	2.0e-82	78.7
WP_088296144.1\|1890747_1891278_+	hypothetical protein	K7P6W1	Enterobacteria_phage	8.2e-36	48.9

DBSCAN-SWA_5

2044212 : 2131096

Klebsiella_phage(43.18%)

terminase,capsid,integrase,tRNA,head,portal,tail,holin

attL 2040511:2040526|attR 2094935:2094950

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2040511:2040526	attL	NA	NA	NA	NA
WP_004150803.1\|2044212_2045319_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_021313538.1\|2045375_2045834_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004150801.1\|2045850_2046501_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004150800.1\|2046741_2047992_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_048263881.1\|2048109_2049237_-\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	2.6e-119	58.4
WP_012542206.1\|2049217_2049463_-	excisionase	NA	NA	NA	NA
WP_088296158.1\|2049515_2051654_-	exonuclease	S4TNL0	Salmonella_phage	1.5e-99	42.7
WP_014228879.1\|2051795_2052140_-	transcriptional regulator	NA	NA	NA	NA
WP_016160636.1\|2052182_2052377_-	DUF1482 family protein	NA	NA	NA	NA
WP_075206859.1\|2052821_2053268_+	hypothetical protein	NA	NA	NA	NA
WP_088296159.1\|2054209_2054599_-	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	3.9e-35	60.2
WP_012542199.1\|2054700_2054916_+	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
WP_088296160.1\|2054918_2055473_+	hypothetical protein	NA	NA	NA	NA
WP_088296424.1\|2055532_2056537_+	DNA-binding protein	Q286X4	Escherichia_phage	3.5e-19	33.0
WP_088296161.1\|2056529_2056994_+	replication protein	A0A0U2JGJ0	Escherichia_phage	2.4e-63	72.2
WP_088296162.1\|2057007_2057448_+	hypothetical protein	NA	NA	NA	NA
WP_088296163.1\|2057775_2058537_-	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_088296164.1\|2058540_2059680_-	AAA family ATPase	NA	NA	NA	NA
WP_148868964.1\|2060026_2060305_+	hypothetical protein	NA	NA	NA	NA
WP_088296165.1\|2060287_2060911_-	hypothetical protein	NA	NA	NA	NA
WP_088296166.1\|2060936_2061635_-	AAA family ATPase	NA	NA	NA	NA
WP_088296425.1\|2061953_2062181_-	DUF1737 domain-containing protein	NA	NA	NA	NA
WP_025368263.1\|2062582_2062816_+	DinI family protein	K7PM44	Enterobacteria_phage	3.7e-25	71.1
WP_077255782.1\|2062827_2063118_+	hypothetical protein	H6WRY6	Salmonella_phage	8.0e-17	56.9
WP_025861428.1\|2063158_2063551_+	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_088296168.1\|2063750_2064782_+	DUF968 domain-containing protein	S5MW46	Escherichia_phage	3.6e-96	49.6
WP_017898982.1\|2064794_2065136_+	antitermination protein Q	A0A0P0ZCW0	Stx2-converting_phage	1.1e-54	85.0
WP_088296426.1\|2065160_2066195_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	8.2e-64	41.2
WP_088296427.1\|2066214_2067873_-	AAA family ATPase	NA	NA	NA	NA
WP_012542177.1\|2068362_2068539_+	type II toxin-antitoxin system HicA family toxin	A0A0R6PD93	Moraxella_phage	1.4e-08	56.4
WP_012542176.1\|2068586_2068994_+	type II toxin-antitoxin system HicB family antitoxin	F1C593	Cronobacter_phage	2.8e-52	78.8
WP_032439907.1\|2069708_2069978_+\|holin	holin	K7P6H9	Enterobacteria_phage	3.2e-36	85.9
WP_088296428.1\|2069955_2070453_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	3.4e-76	82.1
WP_017898986.1\|2070449_2070800_+	hypothetical protein	R9TPM9	Aeromonas_phage	1.8e-10	39.8
WP_032439852.1\|2072177_2072399_+	hypothetical protein	NA	NA	NA	NA
WP_017898990.1\|2072552_2072915_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.4e-57	81.7
WP_014228902.1\|2072866_2073184_+	hypothetical protein	NA	NA	NA	NA
WP_077259664.1\|2073180_2073612_+	hypothetical protein	Q6UAS0	Klebsiella_phage	1.4e-41	62.0
WP_012542168.1\|2073861_2074296_+\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_032418044.1\|2074295_2076017_+\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	6.5e-191	57.4
WP_032418045.1\|2076010_2076190_+	hypothetical protein	Q6UAX9	Klebsiella_phage	4.0e-11	57.6
WP_032418046.1\|2076189_2077449_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.1e-223	90.2
WP_032418047.1\|2077485_2078406_+	S49 family peptidase	Q6UAX7	Klebsiella_phage	1.6e-148	87.9
WP_014228907.1\|2078483_2079770_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	4.4e-216	89.3
WP_040223144.1\|2079828_2080089_+	hypothetical protein	Q6UAX5	Klebsiella_phage	1.3e-21	62.7
WP_020317538.1\|2080069_2080387_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_014228910.1\|2080383_2080722_+\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_017880258.1\|2080702_2081092_+	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_017898997.1\|2081088_2081490_+	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
WP_040223142.1\|2081521_2081983_+\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	3.9e-66	83.0
WP_014228914.1\|2082040_2082406_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_040223148.1\|2082638_2085995_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	86.5
WP_017880254.1\|2085994_2086333_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	6.4e-58	89.3
WP_032444809.1\|2086329_2087085_+\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	5.1e-124	80.1
WP_032418054.1\|2087086_2087797_+	C40 family peptidase	Q6UAW4	Klebsiella_phage	1.2e-135	90.6
WP_157684459.1\|2087857_2088535_+	PDZ domain-containing protein	NA	NA	NA	NA
WP_032418056.1\|2088581_2089172_+\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	3.7e-77	73.9
WP_088296169.1\|2089234_2100571_+	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	50.3
2094935:2094950	attR	NA	NA	NA	NA
WP_088296170.1\|2100633_2102130_+\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	5.6e-130	64.7
WP_004892953.1\|2102284_2102437_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_023279886.1\|2102709_2103423_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004190914.1\|2103419_2103812_-	hypothetical protein	NA	NA	NA	NA
WP_004150797.1\|2103804_2104128_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_153593982.1\|2104169_2104505_-	hypothetical protein	NA	NA	NA	NA
WP_004140530.1\|2104577_2104805_-	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_021462619.1\|2104917_2106111_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_032429397.1\|2106178_2106514_-	hypothetical protein	NA	NA	NA	NA
WP_004150795.1\|2106733_2106919_+	general stress protein	NA	NA	NA	NA
WP_004148027.1\|2107009_2107504_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004140514.1\|2107530_2108037_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004179357.1\|2108053_2108941_+	manganese catalase family protein	NA	NA	NA	NA
WP_004140511.1\|2108996_2110403_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004183659.1\|2110399_2111410_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140506.1\|2111525_2111723_-	hypothetical protein	NA	NA	NA	NA
WP_004183660.1\|2112289_2112922_+	DNA-binding protein	NA	NA	NA	NA
WP_153233540.1\|2112900_2113089_-	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|2113538_2114225_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004140497.1\|2114535_2116044_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_021313530.1\|2116164_2117055_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004213090.1\|2117061_2118846_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004140494.1\|2118919_2120128_-	HD domain-containing protein	NA	NA	NA	NA
WP_004179363.1\|2120430_2121474_+	type II asparaginase	NA	NA	NA	NA
WP_004148038.1\|2122135_2123050_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150783.1\|2123139_2123778_+	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004140489.1\|2123908_2124172_+	DUF2534 family protein	NA	NA	NA	NA
WP_004140488.1\|2124230_2124356_-	hypothetical protein	NA	NA	NA	NA
WP_004213093.1\|2124473_2124548_-	protein YoaJ	NA	NA	NA	NA
WP_004150782.1\|2124547_2124649_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_004176549.1\|2124706_2125720_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
WP_004176548.1\|2126020_2126260_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004150779.1\|2126249_2126606_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_020802835.1\|2126592_2127102_-	DUF523 domain-containing protein	NA	NA	NA	NA
WP_021441569.1\|2127247_2127940_+	CTP synthase	NA	NA	NA	NA
WP_004148041.1\|2127971_2129156_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_002901073.1\|2129257_2130049_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002901080.1\|2130032_2130479_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901088.1\|2130595_2131096_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_6

2503621 : 2510051

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|2503621_2504242_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_004224682.1\|2504234_2505500_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.8e-234	99.8
WP_002210513.1\|2506675_2507437_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_021440083.1\|2507457_2508324_-	class A beta-lactamase SHV-187	A0A077SL40	Escherichia_phage	1.7e-155	99.6
WP_004176262.1\|2508615_2508876_+	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_021440085.1\|2508962_2510051_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	5.2e-210	99.7

DBSCAN-SWA_7

3114907 : 3157084

Salmonella_phage(25.0%)

integrase,terminase,head

attL 3111156:3111177|attR 3157255:3157276

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3111156:3111177	attL	NA	NA	NA	NA
WP_088296265.1\|3114907_3115951_-	hypothetical protein	A0A2R3UAP8	Myoviridae_environmental_samples	9.9e-17	43.3
WP_009308063.1\|3115952_3116540_-	DUF2612 domain-containing protein	A0A077K9U8	Edwardsiella_phage	3.8e-34	43.4
WP_019725016.1\|3116532_3117765_-	hypothetical protein	A0A077KGW9	Edwardsiella_phage	6.7e-105	50.7
WP_001518114.1\|3117772_3118129_-	hypothetical protein	NA	NA	NA	NA
WP_074189302.1\|3118198_3118936_-	transcriptional regulator	A0A0P0IDX3	Acinetobacter_phage	1.5e-22	46.6
WP_088296266.1\|3119019_3119742_-	hypothetical protein	H6WRU8	Salmonella_phage	1.1e-78	62.7
WP_004223324.1\|3119731_3119905_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	5.1e-19	85.7
WP_032425981.1\|3120017_3120380_+	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	1.5e-12	53.5
WP_157684463.1\|3120358_3120634_-	hypothetical protein	NA	NA	NA	NA
WP_100222754.1\|3120633_3120984_-	hypothetical protein	NA	NA	NA	NA
WP_040155013.1\|3120986_3121574_-	hypothetical protein	A0A1I9SEV6	Klebsiella_phage	1.5e-06	25.9
WP_032425987.1\|3121575_3122430_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	2.4e-29	29.8
WP_032425989.1\|3122426_3122732_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	2.4e-19	45.5
WP_088296268.1\|3122733_3123576_-	hypothetical protein	A0A077KGW3	Edwardsiella_phage	7.7e-28	32.1
WP_088296269.1\|3123579_3125505_-	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	5.8e-39	53.2
WP_023304862.1\|3125709_3126186_-	hypothetical protein	A0A068CGG2	Acinetobacter_phage	5.5e-07	29.8
WP_060613549.1\|3126247_3126778_-	KilA-N domain-containing protein	A0A1V0E5P7	Salmonella_phage	6.4e-89	94.9
WP_023304864.1\|3126958_3127402_-	hypothetical protein	NA	NA	NA	NA
WP_050885324.1\|3127401_3128883_-	DUF3383 domain-containing protein	Q2NPD0	Xanthomonas_phage	2.3e-59	34.6
WP_032693632.1\|3128886_3129438_-	hypothetical protein	NA	NA	NA	NA
WP_029497286.1\|3129419_3129788_-	hypothetical protein	Q6UJ26	Burkholderia_virus	1.2e-06	29.8
WP_064172632.1\|3129784_3130348_-	hypothetical protein	A0A190XCA2	Acinetobacter_phage	4.1e-17	35.6
WP_004196802.1\|3130350_3130794_-	DUF4054 domain-containing protein	A0A1X9SF97	Acinetobacter_phage	4.3e-14	40.5
WP_088296270.1\|3130793_3131120_-	hypothetical protein	H9C0V9	Aeromonas_phage	8.1e-10	41.6
WP_009308036.1\|3131121_3132159_-	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	6.5e-85	50.3
WP_040218280.1\|3132158_3132641_-	hypothetical protein	A0A219YBF2	Aeromonas_phage	1.7e-32	49.7
WP_064172633.1\|3132642_3133812_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	3.4e-58	37.5
WP_064172634.1\|3133846_3134554_-\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	4.3e-56	49.6
WP_047671896.1\|3134606_3136127_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	4.8e-105	45.2
WP_040218288.1\|3136127_3137804_-\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	1.8e-249	74.4
WP_032453643.1\|3137805_3138291_-	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	2.8e-67	79.5
WP_088296271.1\|3138321_3138957_-	hypothetical protein	I6S676	Salmonella_phage	7.2e-103	81.6
WP_088296272.1\|3139415_3139805_-	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	6.9e-24	49.2
WP_004177076.1\|3139801_3140305_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	8.5e-75	78.4
WP_004177077.1\|3140307_3140622_-	hypothetical protein	H6WRZ3	Salmonella_phage	1.1e-43	86.1
WP_025711390.1\|3141221_3142031_-	antitermination protein	M9NZB0	Enterobacteria_phage	1.0e-117	75.5
WP_088296273.1\|3142027_3142168_-	YlcG family protein	NA	NA	NA	NA
WP_064172637.1\|3142164_3142746_-	protein ninG	E7C9S3	Salmonella_phage	3.8e-42	49.5
WP_032413853.1\|3142738_3142909_-	NinE family protein	G8C7V4	Escherichia_phage	2.8e-14	71.4
WP_001548464.1\|3142914_3143511_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.2e-56	53.8
WP_088296274.1\|3143676_3143916_-	hypothetical protein	NA	NA	NA	NA
WP_088296275.1\|3143908_3144340_-	DUF551 domain-containing protein	K7PH64	Enterobacterial_phage	5.0e-07	44.9
WP_088296276.1\|3144512_3145115_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.0e-15	35.6
WP_004884186.1\|3145796_3146021_-	hypothetical protein	H9C169	Pectobacterium_phage	4.4e-15	53.4
WP_004218528.1\|3146017_3146320_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_088296418.1\|3146319_3147096_-	replication protein	A0A193GYX1	Enterobacter_phage	4.2e-97	66.9
WP_088296277.1\|3147092_3147965_-	replication protein	K7PGT1	Enterobacteria_phage	2.0e-55	46.5
WP_088296278.1\|3147961_3148759_-	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.5e-89	71.5
WP_004177098.1\|3148845_3149166_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	5.0e-36	68.9
WP_080876472.1\|3149205_3149433_-	helix-turn-helix domain-containing protein	M9NZA8	Enterobacteria_phage	9.9e-23	78.7
WP_047684997.1\|3149552_3150263_+	helix-turn-helix transcriptional regulator	M9NZE3	Enterobacteria_phage	2.0e-109	80.5
WP_127469885.1\|3150275_3150905_+	hypothetical protein	NA	NA	NA	NA
WP_004151303.1\|3151286_3151481_+	hypothetical protein	NA	NA	NA	NA
WP_088296279.1\|3151569_3151854_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	5.6e-39	78.7
WP_064155284.1\|3151869_3152715_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	9.0e-69	59.2
WP_064172645.1\|3152711_3153392_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.0e-123	92.9
WP_017898874.1\|3153388_3153817_+	hypothetical protein	M9NYX4	Enterobacteria_phage	3.4e-64	81.0
WP_064172646.1\|3153813_3154470_+	DNA methyltransferase	G8C7S6	Escherichia_phage	1.6e-113	88.0
WP_065892240.1\|3154466_3155237_+	dcm methylase	D5LH17	Escherichia_phage	6.5e-66	52.4
WP_004146321.1\|3155233_3155452_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	2.1e-09	47.2
WP_088296280.1\|3155453_3155678_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	7.8e-12	50.0
WP_088296281.1\|3155890_3157084_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	4.2e-136	59.0
3157255:3157276	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3475686 : 3486338

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175262.1\|3475686_3476691_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.8e-31	29.5
WP_022631332.1\|3477090_3477213_+	small membrane protein	NA	NA	NA	NA
WP_004175261.1\|3477635_3478802_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
WP_004175260.1\|3478981_3479536_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_021313306.1\|3479550_3480441_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_004175258.1\|3480472_3481342_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.7e-111	67.0
WP_014343304.1\|3481368_3482433_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-105	55.0
WP_014343305.1\|3482655_3484062_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_124724669.1\|3484328_3486338_-	hypothetical protein	B3VD19	Klebsiella_phage	3.1e-19	27.0

DBSCAN-SWA_9

3577731 : 3682475

100

Enterobacteria_phage(30.61%)

portal,terminase,capsid,lysis,transposase,integrase,tRNA,head,tail,protease

attL 3573353:3573369|attR 3681448:3681464

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3573353:3573369	attL	NA	NA	NA	NA
WP_002912862.1\|3577731_3578664_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_002912865.1\|3579021_3579420_+	hypothetical protein	NA	NA	NA	NA
WP_002912867.1\|3579416_3580112_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_002912869.1\|3580239_3581124_+	cytidine deaminase	NA	NA	NA	NA
WP_004211527.1\|3581399_3582116_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_002912871.1\|3582186_3583197_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_004175074.1\|3583212_3584733_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	3.1e-11	32.0
WP_002912878.1\|3584851_3585850_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_002912919.1\|3586146_3587169_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_088296298.1\|3587324_3588482_-	DUF418 family protein	NA	NA	NA	NA
WP_002912924.1\|3588497_3589166_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	3.4e-55	55.8
WP_004151123.1\|3589526_3590360_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_023285372.1\|3590430_3592404_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	4.8e-12	36.5
WP_002912929.1\|3592902_3594372_-	amino acid permease	NA	NA	NA	NA
WP_002912932.1\|3594550_3595417_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002912935.1\|3595682_3596732_+	YeiH family protein	NA	NA	NA	NA
WP_002912937.1\|3596804_3597659_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	1.5e-23	33.2
WP_021440480.1\|3597709_3599404_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_002912941.1\|3599420_3600359_-	1-phosphofructokinase	NA	NA	NA	NA
WP_032428355.1\|3600359_3601490_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_004151122.1\|3601825_3603007_+	sugar efflux transporter SetB	NA	NA	NA	NA
WP_004175066.1\|3603046_3603301_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_002912951.1\|3603448_3604021_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_002912952.1\|3604091_3605282_-	mannonate dehydratase	NA	NA	NA	NA
WP_004200498.1\|3605489_3606956_+	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	3.2e-45	31.2
WP_021463904.1\|3607076_3608054_+	GTP-binding protein	NA	NA	NA	NA
WP_021440485.1\|3608097_3608805_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_002912967.1\|3609231_3609801_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	3.1e-12	38.0
WP_021440487.1\|3609989_3611552_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_021440488.1\|3611620_3613426_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004200501.1\|3613435_3614530_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_004149131.1\|3614529_3615555_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_004151118.1\|3615556_3617146_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	4.5e-21	32.8
WP_002912974.1\|3617149_3617494_-	hypothetical protein	NA	NA	NA	NA
WP_002912975.1\|3617825_3619022_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.6e-21	24.2
WP_002912977.1\|3619018_3619738_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_088296299.1\|3619885_3621643_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	8.4e-101	41.8
WP_002912979.1\|3621779_3622064_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_004189004.1\|3622122_3623010_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024622809.1\|3623114_3624401_+	serine hydrolase	NA	NA	NA	NA
WP_024622810.1\|3624419_3625016_-	GDP-mannose pyrophosphatase	NA	NA	NA	NA
WP_002912986.1\|3625099_3625861_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_004144267.1\|3625880_3626888_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	2.4e-84	49.8
WP_004195346.1\|3627074_3627302_+	YejL family protein	NA	NA	NA	NA
WP_002912990.1\|3627320_3629081_+	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_000019449.1\|3629484_3630465_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	5.2e-185	98.8
WP_032445407.1\|3630533_3630863_-	hypothetical protein	K7PGV5	Enterobacterial_phage	9.0e-25	51.4
WP_020324298.1\|3630945_3631188_+	DinI family protein	Q6UAW0	Klebsiella_phage	5.8e-29	79.7
WP_088296301.1\|3631434_3632919_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	8.2e-41	39.1
WP_088296302.1\|3633097_3645697_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.7
WP_032423266.1\|3645763_3646366_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.4e-71	68.8
WP_032423265.1\|3646391_3646748_-	hypothetical protein	NA	NA	NA	NA
WP_032423264.1\|3646777_3647488_-	peptidase P60	Q6UAW4	Klebsiella_phage	1.3e-140	92.8
WP_032423263.1\|3647489_3648245_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.2e-130	84.5
WP_015367368.1\|3648241_3648589_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	3.2e-36	63.5
WP_032423262.1\|3648639_3651810_-\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	2.2e-221	50.3
WP_071604863.1\|3651793_3652108_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	3.3e-40	75.0
WP_032423260.1\|3652128_3652551_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	5.2e-33	55.7
WP_020324449.1\|3652561_3653305_-\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	1.9e-115	86.2
WP_020324453.1\|3653311_3653710_-\|tail	phage tail protein	K7P7G5	Enterobacteria_phage	1.7e-54	73.5
WP_020324466.1\|3653706_3654291_-\|tail	phage tail protein	M9NZH5	Enterobacteria_phage	7.3e-78	77.8
WP_020324442.1\|3654299_3654653_-\|head,tail	phage head-tail attachment	K7P6U9	Enterobacteria_phage	6.7e-42	68.4
WP_020324456.1\|3654663_3655038_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_020324455.1\|3655088_3656117_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.2e-110	58.7
WP_020324485.1\|3656193_3656532_-\|head	head decoration protein	NA	NA	NA	NA
WP_020324467.1\|3656546_3657881_-	putative signal peptide peptidase SppA, 36K type	A0A2I6TC87	Escherichia_phage	3.6e-88	54.7
WP_032423258.1\|3658029_3659610_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.7e-185	61.9
WP_032423257.1\|3659606_3659813_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.3e-18	76.9
WP_032423256.1\|3659796_3661728_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.0e-257	65.5
WP_020324437.1\|3661699_3662206_-	phage DNA packaging protein Nu1	O64316	Escherichia_phage	3.4e-39	53.4
WP_085858171.1\|3662540_3662963_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.4e-38	59.9
WP_085858169.1\|3662959_3663238_-	hypothetical protein	NA	NA	NA	NA
WP_085858167.1\|3663408_3663642_+	hypothetical protein	NA	NA	NA	NA
WP_088296432.1\|3663931_3664438_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_004122979.1\|3664440_3664974_-	lysozyme	G9L6J6	Escherichia_phage	9.6e-85	83.3
WP_020324441.1\|3664975_3665230_-\|lysis	lysis protein S	A0A127KNH9	Pseudomonas_phage	1.3e-07	38.0
WP_032423251.1\|3665353_3665542_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_004122981.1\|3665605_3666016_+	HicB family protein	NA	NA	NA	NA
WP_032423250.1\|3666051_3667101_-	site-specific DNA-methyltransferase	K7PKK9	Enterobacteria_phage	2.1e-171	80.2
WP_004122985.1\|3667250_3667442_-	hypothetical protein	Q9MC00	Enterobacteria_phage	1.9e-22	82.8
WP_088296303.1\|3667635_3668334_-	antitermination protein	NA	NA	NA	NA
WP_020324472.1\|3668355_3669417_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.3e-109	54.9
WP_088296304.1\|3669413_3671141_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	7.9e-229	60.6
WP_088296305.1\|3671133_3672024_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	1.2e-127	74.1
WP_088296306.1\|3672020_3672902_-	GntR family transcriptional regulator	K7PLZ7	Enterobacterial_phage	3.4e-34	56.9
WP_020324468.1\|3672898_3673078_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_032423269.1\|3673080_3673806_-	antirepressor	A0A2I7RHG4	Vibrio_phage	6.8e-49	48.1
WP_088296307.1\|3673855_3674053_-	hypothetical protein	NA	NA	NA	NA
WP_064168524.1\|3674049_3674607_-	hypothetical protein	A0A1C9II13	Salmonella_phage	3.8e-68	68.2
WP_020324431.1\|3674629_3674845_-	hypothetical protein	NA	NA	NA	NA
WP_001515607.1\|3674944_3675571_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	1.2e-46	48.8
WP_088296433.1\|3676202_3676574_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.4e-58	92.7
WP_071042601.1\|3676630_3677458_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	3.6e-131	85.1
WP_020324479.1\|3677590_3678118_+	hypothetical protein	A0A0P0ZCH9	Stx2-converting_phage	1.3e-62	65.7
WP_004123005.1\|3678117_3678315_+	hypothetical protein	NA	NA	NA	NA
WP_071042600.1\|3678316_3678889_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.2e-93	83.5
WP_001515618.1\|3678933_3679143_+	hypothetical protein	NA	NA	NA	NA
WP_048993903.1\|3679145_3680333_+\|integrase	tyrosine-type recombinase/integrase	A0A2D1GN00	Marinobacter_phage	1.9e-32	30.0
WP_002912992.1\|3680699_3681809_+	AI-2E family transporter	NA	NA	NA	NA
3681448:3681464	attR	NA	NA	NA	NA
WP_032428356.1\|3681983_3682475_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA

DBSCAN-SWA_10

3875776 : 3950815

Salmonella_phage(48.94%)

terminase,transposase,integrase,tRNA,tail,holin,protease

attL 3881419:3881436|attR 3949804:3949821

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021440547.1\|3875776_3877780_-\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_002913800.1\|3877789_3878665_-	neutral zinc metallopeptidase	NA	NA	NA	NA
WP_002913801.1\|3878784_3879498_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A127KMU1	Cyanophage	1.1e-38	35.7
WP_004149279.1\|3879714_3880749_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_002913803.1\|3880765_3881644_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
3881419:3881436	attL	NA	NA	NA	NA
WP_157684464.1\|3881551_3882559_+	glycine cleavage system transcriptional repressor	NA	NA	NA	NA
WP_002913806.1\|3882620_3883682_-	AI-2E family transporter	NA	NA	NA	NA
WP_002913807.1\|3883904_3885368_+\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
WP_002913810.1\|3885377_3885737_+	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_023301620.1\|3885864_3886788_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
WP_020947395.1\|3886784_3887486_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913824.1\|3887584_3888871_-	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_002913827.1\|3888966_3889593_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_021440551.1\|3889810_3891244_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_021440552.1\|3891253_3892147_-	ROK family protein	NA	NA	NA	NA
WP_004149288.1\|3892410_3893448_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	6.3e-72	44.5
WP_004145656.1\|3893444_3894086_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	9.0e-29	41.1
WP_002913838.1\|3894266_3896327_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_002913839.1\|3896330_3897863_+	exopolyphosphatase	NA	NA	NA	NA
WP_021469752.1\|3897916_3900145_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_002913843.1\|3900497_3900689_+	DUF2633 family protein	G9L6F2	Escherichia_phage	3.3e-19	79.3
WP_088296320.1\|3900785_3901673_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021440556.1\|3901770_3903003_+	MFS transporter	NA	NA	NA	NA
WP_021440557.1\|3903296_3904475_+	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_009309501.1\|3904458_3906327_+	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_088296321.1\|3906546_3907029_-	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	2.2e-64	83.1
WP_088296322.1\|3907025_3907655_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	4.8e-91	77.4
WP_004146393.1\|3907644_3907950_-\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	82.4
WP_040025554.1\|3907936_3908341_-	membrane protein	T1SA79	Salmonella_phage	7.1e-56	84.8
WP_088296324.1\|3911570_3911867_+	hypothetical protein	T1SA06	Salmonella_phage	1.8e-24	64.3
WP_148868800.1\|3912089_3912941_-	hypothetical protein	NA	NA	NA	NA
WP_088296326.1\|3913419_3914124_+	Bro-N domain-containing protein	G9L6E2	Escherichia_phage	4.1e-67	55.8
WP_025860592.1\|3914366_3914579_+	hypothetical protein	NA	NA	NA	NA
WP_048293155.1\|3914575_3914953_+	hypothetical protein	NA	NA	NA	NA
WP_088296327.1\|3915227_3916079_-	hypothetical protein	NA	NA	NA	NA
WP_088296328.1\|3916080_3919470_-	hypothetical protein	G9L6D4	Escherichia_phage	6.3e-121	42.1
WP_060594304.1\|3919469_3922214_-	hypothetical protein	A0A193GYI3	Enterobacter_phage	8.8e-97	39.9
WP_024622833.1\|3922226_3922724_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	5.2e-24	41.7
WP_049139501.1\|3922716_3923187_-	hypothetical protein	Q858G2	Salmonella_phage	7.3e-44	55.3
WP_088296329.1\|3923188_3925666_-	hypothetical protein	G9L6D0	Escherichia_phage	1.6e-267	56.6
WP_004197381.1\|3925665_3926277_-	hypothetical protein	T1SAQ2	Salmonella_phage	9.2e-47	48.8
WP_024622837.1\|3926325_3926604_-	hypothetical protein	T1SA01	Salmonella_phage	1.1e-20	58.9
WP_004152466.1\|3926596_3926989_-	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
WP_004197367.1\|3926998_3928006_-	bbp17	T1S9H9	Salmonella_phage	2.1e-181	92.8
WP_004152468.1\|3928018_3928417_-	peptidase	T1SAP9	Salmonella_phage	5.6e-37	59.5
WP_004152470.1\|3928698_3929004_-	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
WP_004149313.1\|3929000_3930680_-\|tail	tail protein	T1S9Z7	Salmonella_phage	3.6e-194	59.3
WP_004152472.1\|3930683_3930887_-	hypothetical protein	NA	NA	NA	NA
WP_088296332.1\|3931673_3932432_+	hypothetical protein	NA	NA	NA	NA
WP_088296333.1\|3932436_3933912_-\|terminase	terminase	Q858H3	Salmonella_phage	9.3e-279	92.4
WP_064148536.1\|3933908_3934499_-\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.5e-78	78.5
WP_032418540.1\|3934576_3934834_-	hypothetical protein	NA	NA	NA	NA
WP_069135858.1\|3934908_3935247_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	2.4e-49	87.3
WP_088296334.1\|3935239_3935533_-	hypothetical protein	A0A220NQY7	Salmonella_phage	1.3e-06	38.5
WP_088296335.1\|3935525_3936212_-	hypothetical protein	Q9G078	Enterobacteria_phage	2.0e-13	46.4
WP_148868802.1\|3936384_3936876_-	hypothetical protein	A0A220NQV2	Salmonella_phage	3.6e-17	35.7
WP_040181701.1\|3936982_3937243_-	DUF4752 family protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
WP_088296336.1\|3937239_3937647_-	hypothetical protein	K7PGR4	Enterobacteria_phage	8.6e-17	44.9
WP_048328152.1\|3937839_3938187_-	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.5e-50	82.6
WP_088296337.1\|3938312_3939083_-	DNA replication domain protein	G9L6A8	Escherichia_phage	1.2e-59	90.0
WP_088296338.1\|3939072_3940134_-	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	7.2e-140	63.0
WP_004152538.1\|3940480_3940714_-	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004197420.1\|3940868_3941450_+	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	4.6e-64	64.3
WP_004164029.1\|3941825_3942125_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_042632443.1\|3942410_3943232_+	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.2e-131	81.0
WP_088296339.1\|3943228_3944110_+	recombinase RecT	T1SBJ5	Salmonella_phage	2.1e-132	82.6
WP_004144294.1\|3944158_3944407_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_009485475.1\|3944516_3944810_+	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
WP_004152545.1\|3944802_3944961_+	DUF1317 family protein	T1SAR0	Salmonella_phage	1.9e-17	78.8
WP_088296340.1\|3944957_3945470_+	hypothetical protein	NA	NA	NA	NA
WP_059065281.1\|3945459_3946056_+	adenine methylase	T1SA14	Salmonella_phage	5.3e-108	92.3
WP_024622860.1\|3946052_3946244_+	hypothetical protein	NA	NA	NA	NA
WP_088296341.1\|3946260_3947511_-\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	4.4e-205	84.9
WP_004151979.1\|3947703_3949281_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_004151980.1\|3949348_3950815_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
3949804:3949821	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4051239 : 4060128

Escherichia_coli_O157_typing_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088296347.1\|4051239_4052310_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.6e-89	51.2
WP_001067858.1\|4052939_4053644_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_032428262.1\|4053989_4054412_+	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_004179627.1\|4054961_4055381_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	58.3
WP_064278833.1\|4055382_4056648_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.8e-207	83.2
WP_157684465.1\|4056810_4056969_+	hypothetical protein	NA	NA	NA	NA
WP_064278832.1\|4057221_4057893_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_047057996.1\|4058130_4058964_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|4059645_4060128_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4

DBSCAN-SWA_12

4538569 : 4608286

Burkholderia_virus(32.0%)

plate,terminase,portal,capsid,integrase,transposase,tRNA,head,tail,protease

attL 4529054:4529069|attR 4608466:4608511

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4529054:4529069	attL	NA	NA	NA	NA
WP_020804545.1\|4538569_4539151_-	DNA-invertase Hin	A0A0A7NPV4	Enterobacteria_phage	2.2e-66	71.5
4529054:4529069	attL	NA	NA	NA	NA
WP_088296370.1\|4539200_4539758_+\|tail	phage tail protein	K7PH60	Enterobacterial_phage	2.3e-44	58.1
WP_000805565.1\|4539757_4540351_+\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	5.9e-59	63.9
WP_001174919.1\|4540322_4540763_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.5e-51	66.7
WP_088296371.1\|4540765_4541611_-\|tail	phage tail protein	F1BUP1	Erwinia_phage	4.8e-54	53.1
WP_006687313.1\|4541613_4542192_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	7.5e-67	66.3
WP_020803501.1\|4542184_4543288_-\|plate	baseplate J-like protein	A4JWL6	Burkholderia_virus	9.2e-106	53.3
WP_000859115.1\|4543278_4543626_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	7.8e-35	63.3
WP_021544460.1\|4543680_4544193_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	2.1e-20	37.9
WP_006687307.1\|4544192_4545362_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.6e-87	48.9
WP_006687305.1\|4545349_4545565_-\|tail	bacteriophage tail fiber protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_006687304.1\|4545561_4546446_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	2.6e-50	47.0
WP_059329505.1\|4546445_4548911_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.3e-171	42.6
WP_001148841.1\|4549003_4549141_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084225.1\|4549106_4549421_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_059336407.1\|4549477_4549801_-	hypothetical protein	NA	NA	NA	NA
WP_001062395.1\|4549803_4550325_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.0e-67	68.8
WP_000729861.1\|4550324_4551752_-\|tail	tail protein	A4JWK5	Burkholderia_virus	3.4e-217	78.6
WP_001446463.1\|4551741_4551996_-	hypothetical protein	NA	NA	NA	NA
WP_001101809.1\|4551992_4552457_-	hypothetical protein	Q6QIB2	Burkholderia_phage	4.1e-39	51.7
WP_000271666.1\|4552456_4552903_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	1.1e-33	51.7
WP_000537462.1\|4552904_4553261_-	DUF2190 family protein	NA	NA	NA	NA
WP_029464126.1\|4553271_4554225_-	hypothetical protein	A4JWK0	Burkholderia_virus	9.9e-64	43.3
WP_088296372.1\|4554238_4555336_-	peptidase	A4JWJ9	Burkholderia_virus	7.0e-98	50.1
WP_032438841.1\|4555550_4556009_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.1e-28	43.0
WP_059336409.1\|4556011_4556833_-\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	9.0e-98	61.9
WP_006687283.1\|4556813_4558310_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	2.8e-174	61.5
WP_059329515.1\|4558309_4559833_-	hypothetical protein	A4JWJ4	Burkholderia_virus	1.3e-182	62.2
WP_000124057.1\|4559829_4560375_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	1.2e-58	67.6
WP_006122433.1\|4560374_4560686_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	3.2e-32	63.6
WP_020803495.1\|4560678_4561011_-	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	47.7
WP_032438838.1\|4561007_4561661_-	lipoprotein	J9SVN7	Pseudomonas_phage	1.4e-08	31.6
WP_045285375.1\|4561650_4562373_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.8e-62	58.4
WP_016191696.1\|4562375_4562726_-	hypothetical protein	A4JWP3	Burkholderia_virus	1.2e-22	53.9
WP_059329514.1\|4563101_4563668_-	DUF2441 domain-containing protein	NA	NA	NA	NA
WP_059329513.1\|4563911_4564682_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	1.7e-98	64.9
WP_001569386.1\|4564729_4565263_-	hypothetical protein	NA	NA	NA	NA
WP_021544473.1\|4565298_4565709_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001041677.1\|4565797_4566022_+	hypothetical protein	NA	NA	NA	NA
WP_000042842.1\|4566018_4566324_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	9.2e-24	58.0
WP_006687266.1\|4566333_4567242_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	6.3e-76	55.4
WP_059329512.1\|4567245_4569015_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	1.1e-228	67.8
WP_020803496.1\|4569025_4570192_+	AAA family ATPase	A4JWN1	Burkholderia_virus	1.3e-121	60.9
WP_000835317.1\|4570194_4570464_+	hypothetical protein	NA	NA	NA	NA
WP_088296373.1\|4570481_4571093_+	DUF3164 family protein	A0A2D1GNM4	Pseudomonas_phage	3.2e-76	68.5
WP_020803515.1\|4571171_4571360_+	hypothetical protein	NA	NA	NA	NA
WP_032438819.1\|4571356_4571653_+	hypothetical protein	NA	NA	NA	NA
WP_020803512.1\|4571639_4572329_+	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	8.5e-25	36.4
WP_023304080.1\|4572325_4572553_+	hypothetical protein	NA	NA	NA	NA
WP_020803523.1\|4573172_4573562_+	DNA-binding protein RdgB	Q6QIE8	Burkholderia_phage	6.5e-30	52.5
WP_023304082.1\|4573581_4573911_+	DUF3486 family protein	NA	NA	NA	NA
WP_088296374.1\|4574043_4575315_-	inorganic triphosphatase	NA	NA	NA	NA
WP_002916862.1\|4575529_4576150_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_002916864.1\|4576211_4577453_+\|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	5.2e-89	50.1
WP_004144532.1\|4577464_4578286_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_004150923.1\|4578484_4578868_-	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
WP_004144530.1\|4578975_4579593_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_004174349.1\|4579990_4580815_+	urease accessory protein UreD	NA	NA	NA	NA
WP_002916871.1\|4580824_4581127_+	urease subunit gamma	NA	NA	NA	NA
WP_021440738.1\|4581136_4581457_+	urease subunit beta	NA	NA	NA	NA
WP_015958999.1\|4581449_4583153_+	urease subunit alpha	NA	NA	NA	NA
WP_004215466.1\|4583162_4583639_+	urease accessory protein UreE	NA	NA	NA	NA
WP_088296375.1\|4583640_4584315_+	urease accessory protein UreF	NA	NA	NA	NA
WP_002916877.1\|4584323_4584941_+	urease accessory protein UreG	NA	NA	NA	NA
WP_025367880.1\|4585094_4586702_+	allantoin permease	NA	NA	NA	NA
WP_004900709.1\|4586746_4587760_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	59.2
WP_001144069.1\|4587997_4588213_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_004149864.1\|4588324_4590070_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-75	38.7
WP_004174339.1\|4590288_4592130_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
4591010:4591025	attR	NA	NA	NA	NA
WP_002917636.1\|4592229_4592736_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
4591010:4591025	attR	NA	NA	NA	NA
WP_071583194.1\|4593042_4593582_+	NYN domain-containing protein	NA	NA	NA	NA
WP_071583195.1\|4593798_4594086_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_088296376.1\|4594138_4595800_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	95.8
WP_004174262.1\|4595783_4596140_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	1.6e-59	98.3
WP_044245563.1\|4596414_4596858_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	4.9e-50	63.3
WP_023323295.1\|4596857_4597151_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.2e-42	82.5
WP_004174258.1\|4597143_4597482_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	7.3e-22	47.7
WP_142776965.1\|4597478_4598714_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	6.5e-233	95.6
WP_004174254.1\|4598715_4599276_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.3e-100	98.4
WP_075253255.1\|4599327_4600488_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	2.2e-206	95.9
WP_088296378.1\|4600771_4601806_+	hypothetical protein	NA	NA	NA	NA
WP_071583200.1\|4601807_4602329_+	hypothetical protein	NA	NA	NA	NA
WP_071583201.1\|4602370_4602616_-	hypothetical protein	NA	NA	NA	NA
WP_075253253.1\|4602899_4604699_-	DNA primase	Q7M2A8	Enterobacteria_phage	5.1e-130	49.0
WP_040177077.1\|4604695_4604995_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_071533744.1\|4604999_4605200_-	hypothetical protein	NA	NA	NA	NA
WP_004174243.1\|4605192_4605453_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_071533773.1\|4605592_4605784_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_004174242.1\|4605892_4606099_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_075253252.1\|4606250_4606865_-	hypothetical protein	NA	NA	NA	NA
WP_085858666.1\|4606861_4608286_-\|integrase	integrase family protein	NA	NA	NA	NA
4608466:4608511	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP021956

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

34510 : 93760

Shigella_phage(28.57%)

integrase,transposase

attL 46887:46946|attR 86249:87503

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085929673.1\|34510_35679_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_088296443.1\|36654_37932_+	DUF3150 domain-containing protein	NA	NA	NA	NA
WP_000039318.1\|38016_39813_+	VWA domain-containing protein	NA	NA	NA	NA
WP_001071288.1\|39874_40210_+	hypothetical protein	NA	NA	NA	NA
WP_000018872.1\|40474_41014_+	hypothetical protein	NA	NA	NA	NA
WP_000793769.1\|41104_41605_+	hypothetical protein	NA	NA	NA	NA
WP_000477209.1\|41678_42563_+	hypothetical protein	NA	NA	NA	NA
WP_001102700.1\|42628_42853_+	2Fe-2S ferredoxin-like protein	NA	NA	NA	NA
WP_000026577.1\|42914_43304_+	hypothetical protein	NA	NA	NA	NA
WP_001176699.1\|43293_43746_+	hypothetical protein	NA	NA	NA	NA
WP_000651508.1\|44083_44275_+	hypothetical protein	NA	NA	NA	NA
WP_001337696.1\|44319_44697_+	hypothetical protein	NA	NA	NA	NA
WP_000209093.1\|44888_45233_+	hypothetical protein	NA	NA	NA	NA
WP_000410925.1\|45310_45613_+	hypothetical protein	NA	NA	NA	NA
46887:46946	attL	NA	NA	NA	NA
WP_085929673.1\|46897_48066_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_015058950.1\|48583_49060_+	hypothetical protein	NA	NA	NA	NA
WP_001093868.1\|49133_49688_+	hypothetical protein	NA	NA	NA	NA
WP_000042274.1\|49920_50307_+	hypothetical protein	NA	NA	NA	NA
WP_001187970.1\|50394_52848_+	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA
WP_000050848.1\|53049_53253_+	hypothetical protein	NA	NA	NA	NA
WP_000071870.1\|53324_53930_+	5'-deoxynucleotidase	NA	NA	NA	NA
WP_000184110.1\|53922_54192_+	hypothetical protein	NA	NA	NA	NA
WP_000260293.1\|54205_54424_+	hypothetical protein	NA	NA	NA	NA
WP_000064431.1\|54497_55055_+	pyruvate dehydrogenase	NA	NA	NA	NA
WP_000595210.1\|55129_55981_+	hypothetical protein	A0A219UQS0	Bacillus_phage	3.6e-09	29.4
WP_001077335.1\|56438_56825_+	hypothetical protein	NA	NA	NA	NA
WP_000122923.1\|57002_58730_+	hypothetical protein	A0A0P0ZFY3	Escherichia_phage	9.9e-14	32.6
WP_000268337.1\|58716_58995_+	hypothetical protein	NA	NA	NA	NA
WP_000714162.1\|59067_59307_+	permease	NA	NA	NA	NA
WP_001337692.1\|59526_59928_+	hypothetical protein	NA	NA	NA	NA
WP_000988732.1\|60041_60767_+	hypothetical protein	NA	NA	NA	NA
WP_088296444.1\|60899_65162_+	type IV secretion protein Rhs	A0A2H4JHK7	uncultured_Caudovirales_phage	5.8e-23	53.4
WP_000787563.1\|65158_65431_+	MafI family immunity protein	NA	NA	NA	NA
WP_000243483.1\|65690_66026_+	hypothetical protein	NA	NA	NA	NA
WP_088296448.1\|66222_66639_+	hypothetical protein	NA	NA	NA	NA
WP_001143775.1\|66663_69669_-\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.3
WP_001217881.1\|69830_70388_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_065187201.1\|70621_71176_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_001206315.1\|71245_72034_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000722315.1\|72093_72918_+	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
WP_000027057.1\|73617_74478_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_000278322.1\|74660_75263_-	hypothetical protein	NA	NA	NA	NA
WP_000243801.1\|75485_75806_+	hypothetical protein	NA	NA	NA	NA
WP_000949433.1\|76104_76641_+	hypothetical protein	NA	NA	NA	NA
WP_000543934.1\|76643_77654_+\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
WP_000997323.1\|77658_78528_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.5e-23	35.1
WP_000139717.1\|78524_79016_+	hypothetical protein	NA	NA	NA	NA
WP_001097010.1\|79332_80208_+	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_000101568.1\|80378_81419_+	DNA-binding protein	NA	NA	NA	NA
WP_000811656.1\|81705_83217_+	ATP-dependent helicase	A0A2D1GN12	Pseudoalteromonas_phage	3.6e-44	30.7
WP_001326396.1\|83327_84368_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000256129.1\|84369_85803_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_085929673.1\|86259_87428_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_000683483.1\|90719_91082_-	hypothetical protein	NA	NA	NA	NA
86249:87503	attR	NA	NA	NA	NA
WP_000356489.1\|91797_92070_+	nucleotide excision repair protein	A0A2H4J3B6	uncultured_Caudovirales_phage	1.3e-08	41.0
WP_088296446.1\|92069_92642_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_085929673.1\|92591_93760_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1

DBSCAN-SWA_2

108832 : 134130

Escherichia_phage(30.0%)

integrase,tRNA,transposase

attL 108781:108840|attR 128528:129347

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
108781:108840	attL	NA	NA	NA	NA
WP_001067855.1\|108832_109537_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|110087_110792_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_015057121.1\|110682_111642_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.7e-47	40.5
WP_000237816.1\|111814_112267_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-2	NA	NA	NA	NA
WP_012300772.1\|112587_113847_+	chloramphenicol efflux MFS transporter CmlA5	S4TR35	Salmonella_phage	1.7e-26	31.7
WP_000846390.1\|114111_114912_+	oxacillin-hydrolyzing class D beta-lactamase OXA-10	NA	NA	NA	NA
WP_001209508.1\|114928_115720_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000679427.1\|115843_116191_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|116184_117024_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|117428_118970_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000846390.1\|119766_120567_+	oxacillin-hydrolyzing class D beta-lactamase OXA-10	NA	NA	NA	NA
WP_001209508.1\|120583_121375_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000679427.1\|121498_121846_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|121839_122679_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|123083_124625_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_025368620.1\|125123_125999_+	class A extended-spectrum beta-lactamase CTX-M-2	A0A1B0VBP7	Salmonella_phage	1.0e-123	81.5
WP_000679427.1\|127082_127430_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001067855.1\|127830_128535_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001044210.1\|128540_128681_+	hypothetical protein	NA	NA	NA	NA
WP_001366550.1\|129166_129904_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
128528:129347	attR	NA	NA	NA	NA
WP_000743213.1\|129900_130125_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|130335_131829_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_071886229.1\|131859_132075_+	hypothetical protein	NA	NA	NA	NA
WP_025368649.1\|132004_132301_-	hypothetical protein	M1PLC5	Streptococcus_phage	5.6e-10	48.5
WP_025368648.1\|132254_133049_-	RmtG family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
WP_025368647.1\|133041_134130_-\|tRNA	tRNA-guanine transglycosylase	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.3e-47	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021957

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021955

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP021956

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection