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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017090 Staphylococcus aureus strain ISU935, complete genome 11 crisprs cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL 6 1 8 0

Results visualization

1. NZ_CP017090
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_1 426420-426521 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_2 780611-780693 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_3 823078-823156 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_4 835730-835809 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_5 871870-871951 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_6 1703254-1703338 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_7 1737684-1737831 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_8 2101302-2101383 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_9 2245469-2245549 Orphan NA
1 spacers
csa3,TnsE_C

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_10 2271422-2271507 Orphan NA
1 spacers
TnsE_C

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017090_11 2379449-2379529 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017090_4 4.1|835754|32|NZ_CP017090|CRISPRCasFinder 835754-835785 32 NZ_CP017090.1 90071-90102 0 1.0
NZ_CP017090_4 4.1|835754|32|NZ_CP017090|CRISPRCasFinder 835754-835785 32 NZ_CP017090.1 872200-872231 0 1.0
NZ_CP017090_4 4.1|835754|32|NZ_CP017090|CRISPRCasFinder 835754-835785 32 NZ_CP017090.1 1717923-1717954 0 1.0
NZ_CP017090_4 4.1|835754|32|NZ_CP017090|CRISPRCasFinder 835754-835785 32 NZ_CP017090.1 2125378-2125409 0 1.0
NZ_CP017090_4 4.1|835754|32|NZ_CP017090|CRISPRCasFinder 835754-835785 32 NZ_CP017090.1 2545730-2545761 0 1.0
NZ_CP017090_8 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder 2101326-2101359 34 NZ_CP017090.1 823077-823110 0 1.0
NZ_CP017090_8 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder 2101326-2101359 34 NZ_CP017090.1 1176333-1176366 0 1.0
NZ_CP017090_4 4.1|835754|32|NZ_CP017090|CRISPRCasFinder 835754-835785 32 NZ_CP017090.1 1388036-1388067 1 0.969
NZ_CP017090_5 5.1|871894|34|NZ_CP017090|CRISPRCasFinder 871894-871927 34 NZ_CP017090.1 1387958-1387991 1 0.971
NZ_CP017090_6 6.1|1703280|33|NZ_CP017090|CRISPRCasFinder 1703280-1703312 33 NZ_CP017090.1 188880-188912 1 0.97
NZ_CP017090_6 6.1|1703280|33|NZ_CP017090|CRISPRCasFinder 1703280-1703312 33 NZ_CP017090.1 828519-828551 1 0.97
NZ_CP017090_6 6.1|1703280|33|NZ_CP017090|CRISPRCasFinder 1703280-1703312 33 NZ_CP017090.1 1387959-1387991 1 0.97
NZ_CP017090_8 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder 2101326-2101359 34 NZ_CP017090.1 1836267-1836300 1 0.971
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 835704-835734 1 0.968
NZ_CP017090_7 7.2|1737791|22|NZ_CP017090|PILER-CR 1737791-1737812 22 NZ_CP017090.1 2101271-2101292 2 0.909
NZ_CP017090_7 7.2|1737791|22|NZ_CP017090|PILER-CR 1737791-1737812 22 NZ_CP017090.1 2101388-2101409 2 0.909
NZ_CP017090_8 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder 2101326-2101359 34 NZ_CP017090.1 1392332-1392365 2 0.941
NZ_CP017090_8 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder 2101326-2101359 34 NZ_CP017090.1 2820550-2820583 2 0.941
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 90077-90107 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 387682-387712 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 655335-655365 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 872206-872236 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 1079404-1079434 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 1181821-1181851 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 1387917-1387947 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 1476350-1476380 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 1476466-1476496 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 1717918-1717948 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 2040169-2040199 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 2368673-2368703 2 0.935
NZ_CP017090_11 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder 2379474-2379504 31 NZ_CP017090.1 2545736-2545766 2 0.935

1. spacer 4.1|835754|32|NZ_CP017090|CRISPRCasFinder matches to position: 90071-90102, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

2. spacer 4.1|835754|32|NZ_CP017090|CRISPRCasFinder matches to position: 872200-872231, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

3. spacer 4.1|835754|32|NZ_CP017090|CRISPRCasFinder matches to position: 1717923-1717954, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

4. spacer 4.1|835754|32|NZ_CP017090|CRISPRCasFinder matches to position: 2125378-2125409, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

5. spacer 4.1|835754|32|NZ_CP017090|CRISPRCasFinder matches to position: 2545730-2545761, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

6. spacer 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder matches to position: 823077-823110, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

7. spacer 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder matches to position: 1176333-1176366, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

8. spacer 4.1|835754|32|NZ_CP017090|CRISPRCasFinder matches to position: 1388036-1388067, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaaactgactttccgc	Protospacer
*******************.************

9. spacer 5.1|871894|34|NZ_CP017090|CRISPRCasFinder matches to position: 1387958-1387991, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

10. spacer 6.1|1703280|33|NZ_CP017090|CRISPRCasFinder matches to position: 188880-188912, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

11. spacer 6.1|1703280|33|NZ_CP017090|CRISPRCasFinder matches to position: 828519-828551, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attggaaatccaatttctctgtgttggggccca	Protospacer
*****.***************************

12. spacer 6.1|1703280|33|NZ_CP017090|CRISPRCasFinder matches to position: 1387959-1387991, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

13. spacer 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder matches to position: 1836267-1836300, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

14. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 835704-835734, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

15. spacer 7.2|1737791|22|NZ_CP017090|PILER-CR matches to position: 2101271-2101292, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

16. spacer 7.2|1737791|22|NZ_CP017090|PILER-CR matches to position: 2101388-2101409, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

17. spacer 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder matches to position: 1392332-1392365, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

18. spacer 8.1|2101326|34|NZ_CP017090|CRISPRCasFinder matches to position: 2820550-2820583, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

19. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 90077-90107, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

20. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 387682-387712, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

21. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 655335-655365, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

22. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 872206-872236, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

23. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 1079404-1079434, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

24. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 1181821-1181851, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

25. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 1387917-1387947, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

26. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 1476350-1476380, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

27. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 1476466-1476496, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

28. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 1717918-1717948, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

29. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 2040169-2040199, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

30. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 2368673-2368703, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

31. spacer 11.1|2379474|31|NZ_CP017090|CRISPRCasFinder matches to position: 2545736-2545766, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017090_10 10.1|2271448|34|NZ_CP017090|CRISPRCasFinder 2271448-2271481 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP017090_10 10.1|2271448|34|NZ_CP017090|CRISPRCasFinder 2271448-2271481 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 10.1|2271448|34|NZ_CP017090|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

2. spacer 10.1|2271448|34|NZ_CP017090|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12545 : 70775 49 Bacillus_phage(33.33%) protease,tRNA,transposase,integrase attL 58643:58702|attR 73237:77904
DBSCAN-SWA_2 758730 : 766551 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 778522 : 793163 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 880281 : 934366 73 Staphylococcus_phage(76.27%) tail,terminase,holin,transposase,integrase,plate,capsid,portal,head attL 875588:875603|attR 931253:931268
DBSCAN-SWA_5 1080914 : 1089387 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1530741 : 1617966 104 Staphylococcus_phage(72.73%) tail,terminase,tRNA,holin,integrase,protease,capsid,plate,head,portal attL 1567017:1567044|attR 1612360:1612387
DBSCAN-SWA_7 1752923 : 1761966 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1898386 : 1960596 59 Staphylococcus_phage(95.65%) protease,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage