CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022002	Pseudomonas aeruginosa strain Pa1242 chromosome, complete genome	2 crisprs	RT,cas3,DEDDh,csa3,DinG,WYL,PD-DExK	1	1	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022002_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022002_1

5483792-5483894

Orphan

Consensus_repeat	Method
GGCGTTATCCGCCGATACCCCGCCGC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP022002_1

>merge|NZ_CP022002|1|5483792-5483894|CRISPRCasFinder
GGCGTTATCCGCCGATACCCCGCCGCAACGGCGGAGCGAAAGCTGGGAACCCTCCGCGTAGGGCGAATAACGCCGGAGGCGTTATCCGCCGATACCCGCCGCG

>NZ_CP022002|1|1|5483792-5483894|CRISPRCasFinder
GGCGTTATCCGCCGATACCCCGCCGC	AACGGCGGAGCGAAAGCTGGGAACCCTCCGCGTAGGGCGAATAACGCCGGA
GGCGTTATCCGCCGATACCCGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022002.1\|WP_003116397.1\|5492698_5493556_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP022002.1\|WP_003114806.1\|5491754_5492558_+\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP022002.1\|WP_003116401.1\|5475440_5476340_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP022002.1\|WP_016263233.1\|5484804_5486604_-\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP022002.1\|WP_003091534.1\|5477747_5478677_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP022002.1\|WP_003091533.1\|5477230_5477548_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022002.1\|WP_003114814.1\|5476442_5477084_-\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP022002.1\|WP_003091547.1\|5488345_5488657_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP022002.1\|WP_003091551.1\|5490025_5490247_+\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP022002.1\|WP_003109191.1\|5475095_5475431_+\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP022002.1\|WP_003114812.1\|5479492_5480056_+\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_CP022002.1\|WP_003091540.1\|5482231_5482498_+\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP022002.1\|WP_003109182.1\|5483914_5484073_-\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP022002.1\|WP_003114808.1\|5488874_5489732_-\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP022002.1\|WP_016263232.1\|5486693_5488349_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP022002.1\|WP_016263234.1\|5482530_5483655_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_CP022002.1\|WP_003119699.1\|5478683_5479511_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP022002.1\|WP_003114816.1\|5474266_5475031_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380407
NZ_CP022002.1\|WP_003114807.1\|5490389_5491751_+\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_CP022002.1\|WP_003114810.1\|5484181_5484808_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391

Protein	Function_ID	Function_description	E-value
NZ_CP022002.1\|WP_003116397.1\|5492698_5493556_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96
NZ_CP022002.1\|WP_003114806.1\|5491754_5492558_+\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	6.05055e-101
NZ_CP022002.1\|WP_003116401.1\|5475440_5476340_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_CP022002.1\|WP_016263233.1\|5484804_5486604_-\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_CP022002.1\|WP_003091534.1\|5477747_5478677_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_CP022002.1\|WP_003114814.1\|5476442_5477084_-\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_CP022002.1\|WP_003091547.1\|5488345_5488657_-\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_CP022002.1\|WP_003091551.1\|5490025_5490247_+\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33
NZ_CP022002.1\|WP_003109191.1\|5475095_5475431_+\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_CP022002.1\|WP_003114812.1\|5479492_5480056_+\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_CP022002.1\|WP_003091540.1\|5482231_5482498_+\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_CP022002.1\|WP_003109182.1\|5483914_5484073_-\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_CP022002.1\|WP_003114808.1\|5488874_5489732_-\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.52249e-117
NZ_CP022002.1\|WP_016263232.1\|5486693_5488349_-\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP022002.1\|WP_016263234.1\|5482530_5483655_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP022002.1\|WP_003119699.1\|5478683_5479511_+\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	2.13956e-42
NZ_CP022002.1\|WP_003114816.1\|5474266_5475031_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380407	cd07003, cupin_YobQ-like_N, Bacillus subtilis YobQ and related proteins, N-terminal cupin domain. This family includes bacterial proteins homologous to Bacillus subtilis YobQ and Photobacterium leiognathi LumQ, both uncharacterized proteins thought to be DNA-binding proteins that may function as AraC/XylS family transcriptional regulators. YobQ has an N-terminal cupin beta barrel domain (represented by this alignment model) and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	8.06466e-29
NZ_CP022002.1\|WP_003114810.1\|5484181_5484808_-\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94

>NZ_CP022002.1|WP_016263234.1|5482530_5483655_-|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEGEGLQRLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_CP022002.1|WP_003091540.1|5482231_5482498_+|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_CP022002.1|WP_003114812.1|5479492_5480056_+|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_CP022002.1|WP_003119699.1|5478683_5479511_+|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGHYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_CP022002.1|WP_003091534.1|5477747_5478677_+|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_CP022002.1|WP_003091533.1|5477230_5477548_-|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_CP022002.1|WP_003114814.1|5476442_5477084_-|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_CP022002.1|WP_003116401.1|5475440_5476340_+|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_CP022002.1|WP_003109191.1|5475095_5475431_+|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA
>NZ_CP022002.1|WP_003114816.1|5474266_5475031_+|helix-turn-helix-transcriptional-regulator
MGSILSLRHYSHDQIVHSHDHAQLVLGLSGCLDFEVEGRGSRVLRQTFAVVPAQARHACSSPSGSRCLVLDLPCDGSLLLGLGEHAEAGRRLFERPQALSLTPAQGQLVNWLASGPINDPVIAHQGAGLLLASLASERQPPRQQPRLPLASLDAYLDRHAAHPLQVADLARLAGLSVARFHSLFLAETGQTPMDYARSRRLHQAHELLLESSLAVGEIAARVGYASQSAFTAALVREFGVTPRQLRRESRDKTG
>NZ_CP022002.1|WP_003109182.1|5483914_5484073_-|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_CP022002.1|WP_003114810.1|5484181_5484808_-|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_CP022002.1|WP_016263233.1|5484804_5486604_-|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPDFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_CP022002.1|WP_016263232.1|5486693_5488349_-|cation-acetate-symporter
MIARLLAALGLAAFAPALWADSLTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_CP022002.1|WP_003091547.1|5488345_5488657_-|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_CP022002.1|WP_003114808.1|5488874_5489732_-|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_CP022002.1|WP_003091551.1|5490025_5490247_+|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>NZ_CP022002.1|WP_003114807.1|5490389_5491751_+|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTQVASAALTQQAGN
>NZ_CP022002.1|WP_003114806.1|5491754_5492558_+|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGFYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_CP022002.1|WP_003116397.1|5492698_5493556_+|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV

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Crispr_ID: NZ_CP022002_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022002_2

5712912-5713257

Orphan

Consensus_repeat	Method
CCCTCCCCGTGTAGGGCGAATAACCGCCACGCGGTTATCCGCC	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP022002_2

>merge|NZ_CP022002|2|5712912-5713257|PILER-CR
CCCTCCCCGTGTAGGGCGAATAACCGCCTCGCGGTTATCCGCTGCCTGGGCAGGCGTTTCGGCGGATAACGCCTGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCCACGCGGTTATCCGCCGCCTGGGCAGGCGTTTCGGCGGATAACGCCTGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCACCTCGGCAGGCGTTTCGGCGGATAACGCCTGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCC

>NZ_CP022002|2|1|5712912-5713257|PILER-CR
CCCTCCCCGTGTAGGGCGAATAACCGCCTCGCGGTTATCCGCT	GCCTGGGCAGGCGTTTCGGCGGATAACGCCTGGGGCGTTATTCGCCCTACCGCTTGCT
CCCTCCCCGTGTAGGGCGAATAACCGCCACGCGGTTATCCGCC	GCCTGGGCAGGCGTTTCGGCGGATAACGCCTGGGGCGTTATTCGCCCTACCGCTTGCT
CCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCC	ACCTCGGCAGGCGTTTCGGCGGATAACGCCTGGGGCGTTATTCGCCCTACCGCTTGCT
CCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022002.1\|WP_014602645.1\|5708985_5709882_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP022002.1\|WP_003091896.1\|5715503_5716064_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|237149
NZ_CP022002.1\|WP_003091895.1\|5714781_5715486_+\|dihydromonapterin-reductase	unknown	unknown	gnl\|CDD\|180586
NZ_CP022002.1\|WP_003102335.1\|5704874_5706281_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274522
NZ_CP022002.1\|WP_019726574.1\|5711944_5712838_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP022002.1\|WP_009876877.1\|5717702_5718527_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
NZ_CP022002.1\|WP_003091880.1\|5709878_5710658_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|235916
NZ_CP022002.1\|WP_003102323.1\|5710786_5711473_-\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|224265
NZ_CP022002.1\|WP_003111019.1\|5707566_5708478_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187611
NZ_CP022002.1\|WP_003091897.1\|5716065_5716437_+\|dihydroneopterin-triphosphate-2'-epimerase	unknown	unknown	gnl\|CDD\|183053
NZ_CP022002.1\|WP_003091874.1\|5706679_5707450_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|236205
NZ_CP022002.1\|WP_003091900.1\|5717446_5717662_-\|molybdopterin-binding-protein	unknown	unknown	gnl\|CDD\|226113
NZ_CP022002.1\|WP_003122196.1\|5708593_5708887_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022002.1\|WP_003091899.1\|5716928_5717267_+\|HopJ-type-III-effector-protein	unknown	unknown	gnl\|CDD\|378082
NZ_CP022002.1\|WP_003102319.1\|5713381_5713834_-\|flavodoxin	unknown	unknown	gnl\|CDD\|168208
NZ_CP022002.1\|WP_003091873.1\|5706315_5706660_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225981
NZ_CP022002.1\|WP_003102317.1\|5714113_5714671_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225765
NZ_CP022002.1\|WP_003102309.1\|5718523_5719312_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	unknown	unknown	gnl\|CDD\|183100
NZ_CP022002.1\|WP_003091885.1\|5711459_5711849_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_CP022002.1\|WP_003091898.1\|5716565_5716877_+\|DUF1244-domain-containing-protein	unknown	unknown	gnl\|CDD\|226023

Protein	Function_ID	Function_description	E-value
NZ_CP022002.1\|WP_014602645.1\|5708985_5709882_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.24831e-20
NZ_CP022002.1\|WP_003091896.1\|5715503_5716064_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|237149	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed.	1.62465e-124
NZ_CP022002.1\|WP_003091895.1\|5714781_5715486_+\|dihydromonapterin-reductase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	3.29755e-150
NZ_CP022002.1\|WP_003102335.1\|5704874_5706281_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	1.89748e-57
NZ_CP022002.1\|WP_019726574.1\|5711944_5712838_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.08666e-87
NZ_CP022002.1\|WP_009876877.1\|5717702_5718527_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	7.02876e-166
NZ_CP022002.1\|WP_003091880.1\|5709878_5710658_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|235916	PRK07044, PRK07044, aldolase II superfamily protein; Provisional.	4.352e-160
NZ_CP022002.1\|WP_003102323.1\|5710786_5711473_-\|LrgB-family-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	2.0025e-93
NZ_CP022002.1\|WP_003111019.1\|5707566_5708478_-\|SDR-family-oxidoreductase	gnl\|CDD\|187611	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs. Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	5.71079e-146
NZ_CP022002.1\|WP_003091897.1\|5716065_5716437_+\|dihydroneopterin-triphosphate-2'-epimerase	gnl\|CDD\|183053	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase.	3.45838e-76
NZ_CP022002.1\|WP_003091874.1\|5706679_5707450_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|236205	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein.	2.19023e-155
NZ_CP022002.1\|WP_003091900.1\|5717446_5717662_-\|molybdopterin-binding-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	5.68345e-18
NZ_CP022002.1\|WP_003091898.1\|5716565_5716877_+\|DUF1244-domain-containing-protein	gnl\|CDD\|226023	COG3492, COG3492, Uncharacterized protein conserved in bacteria [Function unknown].	2.30637e-55
NZ_CP022002.1\|WP_003091899.1\|5716928_5717267_+\|HopJ-type-III-effector-protein	gnl\|CDD\|378082	pfam08888, HopJ, HopJ type III effector protein. Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system. The proteins in this family are called HopJ after the original member HopPmaJ.	4.35687e-54
NZ_CP022002.1\|WP_003102319.1\|5713381_5713834_-\|flavodoxin	gnl\|CDD\|168208	PRK05723, PRK05723, flavodoxin; Provisional.	5.35164e-98
NZ_CP022002.1\|WP_003091873.1\|5706315_5706660_+\|cupin-domain-containing-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	8.31479e-48
NZ_CP022002.1\|WP_003102317.1\|5714113_5714671_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225765	COG3224, COG3224, Uncharacterized protein conserved in bacteria [Function unknown].	1.08474e-83
NZ_CP022002.1\|WP_003102309.1\|5718523_5719312_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	1.66799e-135
NZ_CP022002.1\|WP_003091885.1\|5711459_5711849_-\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	3.74785e-31

>NZ_CP022002.1|WP_019726574.1|5711944_5712838_+|LysR-family-transcriptional-regulator
MEFRQLRSFVEVVRQGSFTQAAQVRHASQSTISKQVAQLEQSLGVQVLERNGPHVRLTDAGAVVFRRAEEMLRLRRDLLSELDDLSQLNRGELRLGLPLLGADALFAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELELAGSLTPADDGFDYQPFCNEPLDVLLPAGHPKAAAASVALGELADSPFLLYQQSFTLNDRLLRACLEAGFSPREGGRSGQADFLGALVAANQGVVLLPRVIAREIERPGVVRVLLREPDLRWDIAFIWRRGGYLSRAAQAWLELLRERPLEESPA
>NZ_CP022002.1|WP_003091885.1|5711459_5711849_-|CidA/LrgA-family-protein
MLPPLVRRLSRLAAELAVLIAFWWAGGWLAKAIGLPLPGGVVGLAALLLLFASGLLRPAWLQAGAGLLLAEMLLFFIPALMSLLDYGALLRSEGWRILLVIMLSTLLVMLVTAVSVEWMCRWRARHESR
>NZ_CP022002.1|WP_003102323.1|5710786_5711473_-|LrgB-family-protein
MSLDKQALFWLAATVGGYLLSRQLYRRVKWYWLSPIVFVPVLLYALAIPTHTRYADYARDTNWLVALLGPATVAFAIPIWQQRELLMRHWPALLAGMFAGTAVAIGSSWALAQALALDGQVTLSLLPRSITTPFAMEMSHDLGGVPELTAAFVMITGVFGAVIGGTLLRVLRLRTPLARGALFGVGAHGAGTSRAYEFGGEEGSAAGLLMVLTGLFNLLVAPLVAHCL
>NZ_CP022002.1|WP_003091880.1|5709878_5710658_-|class-II-aldolase/adducin-family-protein
MTAVHSLPADVQAQVSAAEWQTRVDLAACYRLVALHGWDDLIFTHISAKVPGTEDFLINPFGLMFHEITASSLVKVDASGKKLMDSPYEINPAGYTIHSAVHEVRHDVECVLHTHTAAGIAVSCQKQGLLPLSQQSLFVLSSLSYHAYEGVALNHEEKARLQADLGTSNFLILPNHGLLTCGGSIADTFLMMFTLQRACEVQVMAQSGGAELIHIPGQILAGARDMIAGVMRSKTGMGGQLAWPALLRKLDQQNPGYRQ
>NZ_CP022002.1|WP_014602645.1|5708985_5709882_-|alpha/beta-hydrolase
MTAALPGIPLEAWRRRGRTLDFKGFPIRYWEAGQGRPLLLIHGFPSAAWDWHYLWEPLAQRYRVLVCDLLGFGDSAKPRAHRYSLLEQADLQQALLGRLGVDEPLHVLAHDYGDSVAQELLARHHEGRLRLASCVFLNGGLFPETHRPVLSQKLLLSPLGGLFGRLFDRRALARNFAKVFGPRSQPGETELDAFWSLIESNQGQRVMHRLIRYIVDRREQRERWVAALQHGGVPLRVIDGAVDPISGAHMVERYRQLVADADCVLLDGIGHYPQIEAPAAVLEHYLAFRARLDDSEFS
>NZ_CP022002.1|WP_003122196.1|5708593_5708887_-|hypothetical-protein
MHDPVSPLRVFDEGSWLFRQMVQAQPFIRQSGMVLAELGLLLALGLGYLCWQEGSRWYAVGAGFALLGSLLLVVVRHNYDWWLFKLGPRGRLYIPFD
>NZ_CP022002.1|WP_003111019.1|5707566_5708478_-|SDR-family-oxidoreductase
MSDALRFDDQVVIVTGAGGGLGRAHALLFAKHGARVVVNDLGGSTHGEGASASAADKVVAEIRAAGGTAVANHDSVTDGGRIVENALDAFGRVDVVVNNAGILRDKTFHKMEDADWDLVYQVHVEGAYKVTRAAWPHLREQAYGRVVFTSSTSGIYGNFGQSNYGMAKLGLYGLTRTLALEGRKNNILVNAIAPTGGTRMTEGLIPPQVFEQLKPELVSPLVVYLGSSACEDTSGLYEVGGGWIGKVRWERSLGFGFDPKAGFDAEDVAAHWQQICDFENAAHPADNVEALREMMANLQKHAL
>NZ_CP022002.1|WP_003091874.1|5706679_5707450_-|crotonase/enoyl-CoA-hydratase-family-protein
MSVIVERNGPVTTLVIARPERRNAVDRPTAQALADALREFEADDTARVAVLTGSGGNFCAGADLAAVAEDGERRNRLEAEGDGPMGPSRMQLGKPLIAAIEGYAVAGGLELALLADLRVMAEDAICGVFCRRFGVPLIDGGSVRLPRIVGQGRALDLILTGRPVKADEALQIGLANRVVPSGSARAEAEELAAELAAFPQTCMLADRASVYAQWELSFDVALANEFQGGLAVIESGETLEGAQRFKDGEGRHGRFE
>NZ_CP022002.1|WP_003091873.1|5706315_5706660_+|cupin-domain-containing-protein
MALTLLKNTAGADLGAASPVAVPLGEPVAQTRAYAVERTDQVETGIWECTPGRWRRQIVEQEFCHFLQGRCTFTPDGGETIRIEAGDALLLPENSLGVWDVQETVRKSYVIIHR
>NZ_CP022002.1|WP_003102335.1|5704874_5706281_+|FAD-dependent-oxidoreductase
MSAWRHLSLWMNQLDDPLEARPSLEESLEVDVAIVGAGYTGLWTAYYLKRRAPQLRVAIVEAETAGFGASGRNGGWLMGNLLGEDGLLAGLPPERRRAGYDLLHGIPDEVARVLQEEGIDCDYRKGGVLYCAARYPEQERRLRAYLHDLYAEGLDESDYRWLTPQELDQQLRIPGSYGAIHSPHCATIQPARLARGLARAVERLGVRLFEKSRVLHWQRGLLRTERGELRAEWIVPAVEGYAASLPPLGHYQLPVQSLLVATEPLPSSVWAEIGLERGQAFSEFSRQVTYGQRTADDRLAFGARGGYRFGGKLRSDFSLDDEEVGLRRYLFGELFPLLKDARISHTWGGNLGMARRFRPHMLLDRASGIALSGGYGGEGVGASNLGGRTLAALILGEDSELLRQPWVLGERPLDSLARWEPEPCRWLGYNAIIRSFVHEDRVLADPHSAPWRRSLAQTLAAGMESLMR
>NZ_CP022002.1|WP_003102319.1|5713381_5713834_-|flavodoxin
MKVAILSGSVYGTAEEVARHAQKLLSAAGLEASHLPRASLDELKAFAPEAFLVVTSTTGMGELPDNLQPLYYAIRDQLPAWHGLPGGVIGLGDSSYGDTFCGGGEQVRELFGELGVREVLPMLRLDASETVTPETDAEPWLAEFAAALKG
>NZ_CP022002.1|WP_003102317.1|5714113_5714671_+|antibiotic-biosynthesis-monooxygenase
MSTAPVTLLVARRVAAGRYRDFLAWQREGEALAADFPGYLGSGALAPPAGGDEFQMIFRFADDATLAAWAHSASRQAWLERGQGLFDEPRERRAHGLAAWFDDNRKPPRWKQSVAIWLAFFPVSLAFNLGAGPYLGELSLAARVLLSTLVLTPLMTYWFIPLSSRLLAPWLHRRPQRAASLPEAH
>NZ_CP022002.1|WP_003091895.1|5714781_5715486_+|dihydromonapterin-reductase
MATAPILITGASQRVGLHCARRLLADGESVIVSYRSERPALDELRQAGALTLHADFASEAGIFAFIGALRQHTDSLRAIVHNASDWVAETPGHEAEAFQQLFSVHMLAPYLINLHCAELLERSQPADIVHLTDDVARKGSARRIAYCASKAGLDNLTLSFAARFAPRIKVNAISPALVMFNDGDDAEYRARTLAKSALGIEPGPEVIYQSLRYLLDNPYVTGTTLTVNGGRHVK
>NZ_CP022002.1|WP_003091896.1|5715503_5716064_+|GTP-cyclohydrolase-I-FolE
MNPALSQHYREILVGLGEDPQREGLLDTPKRAAKAMQYLCHGYGQTLEEIVNGALFASDNDEMVIVRDIELYSLCEHHLLPFIGKAHVAYIPTGKVLGLSKVARIVDMFARRLQIQENLTRQIAEAVRQVTSAAGVAVVIEAQHMCMMMRGVEKQNSQMFTSVMLGAFRDSNTTRQEFLQLIGRSK
>NZ_CP022002.1|WP_003091897.1|5716065_5716437_+|dihydroneopterin-triphosphate-2'-epimerase
MPRLEPGMARIRVKDLRLRTFIGIKEEEILNKQDVLINLTILYPAADAVEVNDIEHALNYRTITKAIIRHVEENRFALLERMTQEILDLVMENPAVRYAEVEVDKPHALRFAESVSITLAGHR
>NZ_CP022002.1|WP_003091898.1|5716565_5716877_+|DUF1244-domain-containing-protein
MTAANLTEQQRLELEAAAFRTLVHHLQTRKDVQNIDLMNLAGFCRNCLSKWYKAAADDLGVEVSNDQAREEIYGMPYAEWKAKYQKEASPEQQAAFAKSQGNA
>NZ_CP022002.1|WP_003091899.1|5716928_5717267_+|HopJ-type-III-effector-protein
MTLTDFRARLRSEHHLFTDTLAFIAEHYSYTPSAFDNGSVSNPAGQNEGSCKTLGFAILEGLSLEETLLAFGEHYRAVRDNPEGDDHANIRALQQTGLAGVHFERQPLSRRG
>NZ_CP022002.1|WP_003091900.1|5717446_5717662_-|molybdopterin-binding-protein
MTIKAINVRNQFKGTVKEIIEGPVLSEIDVQTAAGIVTSVITTRSVKELELAIGSEVIAFVKSTEVSIAKL
>NZ_CP022002.1|WP_009876877.1|5717702_5718527_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MNAHNAALGGTPQRLKRGIPLALRGVARRFGEREVLKDIDLLVPAGQFVAIVGRSGCGKSTLLRLLAGLDQPSRGELLAGSAALAEAREDTRLMFQDSRLLPWKRVIDNVGLGLRGDWRAKAQQALRAVGLAERANEWPAALSGGQKQRVALARALIHEPRLLLLDEPLGALDALTRIEMQQLIEGLWREHGFTVLLVTHDVSEAVAVADRVILIEDGEIGLDLPVELPRPRSRGSARLAALEAEVLNRVLAQPELPPQPEPVSPLPTQLRWAL
>NZ_CP022002.1|WP_003102309.1|5718523_5719312_-|aliphatic-sulfonate-ABC-transporter-permease-SsuC
MSISKRLAERLAPWALPLVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFLIGGAIGLVLGFVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLAARGLERVWLRWHPAYQVKGGGA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP022002_2	2.3\|5713157\|58\|NZ_CP022002\|PILER-CR	5713157-5713214	58	NZ_CP022002.1	5713258-5713315	0	1.0

1. spacer 2.3|5713157|58|NZ_CP022002|PILER-CR matches to position: 5713258-5713315, mismatch: 0, identity: 1.0

acctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccgcttgct	CRISPR spacer
acctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccgcttgct	Protospacer
**********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022002_1	1.1\|5483818\|51\|NZ_CP022002\|CRISPRCasFinder	5483818-5483868	51	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63841	0	1.0

1. spacer 1.1|5483818|51|NZ_CP022002|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

aacggcggagcgaaagctgggaaccctccgcgtagggcgaataacgccgga	CRISPR spacer
aacggcggagcgaaagctgggaaccctccgcgtagggcgaataacgccgga	Protospacer
***************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39081 : 113348

Dishui_lake_phycodnavirus(20.0%)

plate,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016561461.1\|39081_40005_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003097323.1\|40021_41533_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_016561462.1\|41645_42560_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003114635.1\|42570_42948_+	DOPA 4,5-dioxygenase family protein	NA	NA	NA	NA
WP_003097330.1\|42926_43292_-	Hpt domain-containing protein	NA	NA	NA	NA
WP_003111192.1\|43299_43923_-	response regulator transcription factor	NA	NA	NA	NA
WP_003115801.1\|44108_44915_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_003097340.1\|44911_46120_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_003111191.1\|46223_47111_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003097345.1\|47211_47427_+	dodecin family protein	NA	NA	NA	NA
WP_003097347.1\|47610_47838_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_010793605.1\|48134_49823_+	two-partner secretion system transporter TpsB2	NA	NA	NA	NA
WP_019725670.1\|49935_60468_+	two-partner secretion system putative hemagglutinin TpsA2	NA	NA	NA	NA
WP_157738783.1\|60658_60934_+	hypothetical protein	NA	NA	NA	NA
WP_003158490.1\|61596_61785_+	hypothetical protein	NA	NA	NA	NA
WP_003083536.1\|62403_62799_+	hypothetical protein	NA	NA	NA	NA
WP_003122278.1\|63063_64473_-	MgtC/SapB family protein	NA	NA	NA	NA
WP_010793599.1\|64636_66010_+	T3SS effector bifunctional cytotoxin exoenzyme T	NA	NA	NA	NA
WP_010793598.1\|66505_67192_+	hypothetical protein	NA	NA	NA	NA
WP_003083569.1\|67222_67576_+	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_003083573.1\|67572_68238_+	DUF799 domain-containing protein	NA	NA	NA	NA
WP_003118492.1\|68252_68636_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003118561.1\|68917_70579_-	hypothetical protein	NA	NA	NA	NA
WP_003083582.1\|71188_71329_+	hypothetical protein	NA	NA	NA	NA
WP_012613433.1\|72153_73986_+	asparagine synthase (glutamine-hydrolyzing)	A0A2K9R7N5	Dishui_lake_phycodnavirus	2.7e-17	28.3
WP_003083588.1\|74038_74467_-	cupin domain-containing protein	NA	NA	NA	NA
WP_003104297.1\|74675_75224_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	6.1e-34	41.6
WP_019725672.1\|75832_76753_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003083599.1\|76860_77748_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003114663.1\|77810_78515_+	DsbA family protein	NA	NA	NA	NA
WP_003118563.1\|78598_79054_+	OsmC family protein	NA	NA	NA	NA
WP_003114662.1\|79164_79398_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_003083612.1\|79409_79847_-	hypothetical protein	NA	NA	NA	NA
WP_003083614.1\|79903_80320_-	hypothetical protein	NA	NA	NA	NA
WP_010793594.1\|80411_81539_+	hypothetical protein	NA	NA	NA	NA
WP_003114660.1\|81546_82530_-	hypothetical protein	NA	NA	NA	NA
WP_003128183.1\|83219_83762_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_003083621.1\|83839_85885_+	oligopeptidase A	A0A1V0SD92	Indivirus	4.6e-34	21.3
WP_003083624.1\|85881_86157_+	YheV family putative metal-binding protein	NA	NA	NA	NA
WP_003118567.1\|86245_87304_+	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_003106614.1\|87533_88448_-	hypothetical protein	NA	NA	NA	NA
WP_003106615.1\|88509_90222_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_003158496.1\|90214_91414_-	ABC transporter permease	NA	NA	NA	NA
WP_003114657.1\|91413_92133_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-18	36.3
WP_016252829.1\|92129_95228_-	protein kinase	M1PCM5	Moumouvirus	1.6e-22	27.4
WP_003083639.1\|95235_95964_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_019725673.1\|95973_96654_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_019725674.1\|96650_100184_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_003118500.1\|100180_101530_-	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_003115052.1\|101536_102871_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_003083660.1\|102886_103351_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_019725676.1\|105243_106278_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_003083666.1\|106366_106885_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003104973.1\|106897_108394_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003083670.1\|108469_108958_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003119488.1\|109125_109971_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003104971.1\|109972_110482_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003083676.1\|110478_112338_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003104969.1\|112301_113348_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

632360 : 732630

Pseudomonas_phage(35.56%)

tail,transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611796.1\|632360_633737_+\|transposase	IS30-like element ISPa37 family transposase	W5R8L2	Staphylococcus_phage	1.1e-42	33.7
WP_031636674.1\|635850_637536_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	0.0e+00	99.8
WP_019725805.1\|638615_642353_-	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	4.8e-13	35.4
WP_003085035.1\|642459_644313_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.8
WP_019725806.1\|644392_646387_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.8e-73	40.7
WP_003085042.1\|646469_646919_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.0e-18	38.8
WP_003085057.1\|646988_647204_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_003129196.1\|647404_648430_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_003085061.1\|648508_649078_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|649161_649515_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003142783.1\|649505_650048_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_019725807.1\|650020_651253_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	4.5e-77	43.1
WP_003085071.1\|651296_651803_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|651896_653450_-	SpoVR family protein	NA	NA	NA	NA
WP_003085078.1\|654817_656740_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|657018_657351_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003113213.1\|657394_658246_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|658245_658626_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_019725808.1\|658662_659469_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003117956.1\|659584_660571_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|660567_661860_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_003113209.1\|661840_664615_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_010793493.1\|668742_669417_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_019725809.1\|669418_670177_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_019725810.1\|670177_671239_-	DUF3530 family protein	NA	NA	NA	NA
WP_019725811.1\|671390_673784_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|673829_674462_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|674590_675625_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003085109.1\|675858_676968_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|677023_678070_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003113206.1\|678184_679432_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|679537_680368_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|680491_681166_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003113205.1\|681165_681984_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003113204.1\|682056_683535_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003113203.1\|683853_684168_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_003113202.1\|684267_685038_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|685495_685696_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003118907.1\|685743_686103_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|686465_686915_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003113200.1\|686936_687452_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
WP_003118909.1\|687448_688006_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.0e-45	70.3
WP_003085143.1\|688158_688485_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003118910.1\|688481_689369_+	bacteriophage protein	S4TNY7	Salmonella_phage	1.2e-87	59.8
WP_003118911.1\|689361_689895_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.9e-62	64.6
WP_003123931.1\|689896_691972_+	bacteriophage protein	Q9ZXK6	Pseudomonas_virus	1.3e-198	50.5
WP_003118913.1\|691968_692427_+	hypothetical protein	NA	NA	NA	NA
WP_003118914.1\|692469_693630_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.2e-188	83.7
WP_003085175.1\|693642_694146_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|694160_694505_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_003118915.1\|694674_696912_+	hypothetical protein	NA	NA	NA	NA
WP_003118916.1\|696921_697794_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.1e-74	51.4
WP_003101635.1\|697768_697975_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003109053.1\|698032_699022_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.3e-106	55.8
WP_003118917.1\|699054_699684_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	7.1e-87	78.0
WP_003118918.1\|699680_700043_+	hypothetical protein	H2BDA0	Pseudomonas_phage	1.9e-15	47.9
WP_003118919.1\|700039_700297_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003113190.1\|700612_701107_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
WP_003113189.1\|701118_701466_+	hypothetical protein	NA	NA	NA	NA
WP_003113188.1\|701495_701750_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
WP_003113187.1\|701796_703632_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	1.2e-28	36.2
WP_003113186.1\|703624_703966_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
WP_010793484.1\|703973_704669_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	7.4e-69	49.8
WP_003113184.1\|704671_705442_+	hypothetical protein	A0A2D1GNP8	Pseudomonas_phage	4.2e-81	55.6
WP_003113183.1\|705496_706099_+\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	2.2e-53	57.8
WP_023081593.1\|706157_709772_+\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	54.7
WP_003118927.1\|710007_710796_+	hypothetical protein	NA	NA	NA	NA
WP_003115342.1\|710819_711911_+	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	1.3e-46	36.9
WP_003113180.1\|711910_712246_+	hypothetical protein	NA	NA	NA	NA
WP_010895513.1\|712226_712457_+	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	3.3e-18	62.7
WP_003113178.1\|712552_713605_+	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	4.6e-62	52.2
WP_003113176.1\|713902_714133_+	hypothetical protein	C8ZKF3	Pseudomonas_phage	8.2e-25	71.6
WP_003113175.1\|714551_715157_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
WP_003085203.1\|715158_716208_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|716204_717041_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9
WP_003085214.1\|717102_717747_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003085219.1\|718017_718440_+	OsmC family protein	NA	NA	NA	NA
WP_003101641.1\|718759_719554_+	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003085224.1\|719608_720256_-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_019725814.1\|720355_720694_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003117981.1\|720772_722254_+	AAA family ATPase	U5XJW0	Phormidium_phage	1.0e-67	33.7
WP_003113172.1\|722293_723094_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_014602443.1\|723154_724231_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_014602444.1\|724352_725321_-	nitronate monooxygenase	NA	NA	NA	NA
WP_003113170.1\|725337_725760_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_003113169.1\|726050_727085_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003085249.1\|727084_727804_+	hypothetical protein	NA	NA	NA	NA
WP_003120826.1\|727804_728227_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_003085254.1\|728304_728655_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
WP_017148741.1\|728708_729800_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_003161907.1\|729802_731146_-	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	2.3e-18	44.1
WP_003113167.1\|731430_732630_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_3

2170460 : 2199587

Pseudomonas_phage(52.94%)

integrase,portal,terminase,head,protease

attL 2171918:2171934|attR 2186248:2186264

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003112698.1\|2170460_2170673_+	hypothetical protein	Q56VP8	Pseudomonas_phage	7.6e-33	95.7
WP_023123415.1\|2170676_2170967_+	DUF5447 family protein	Q56VP7	Pseudomonas_phage	5.6e-55	96.9
WP_019725827.1\|2171480_2171915_+	hypothetical protein	Q56VP5	Pseudomonas_phage	6.5e-63	97.2
2171918:2171934	attL	NA	NA	NA	NA
WP_003115130.1\|2171931_2172024_+	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
WP_003124954.1\|2172035_2172287_+	hypothetical protein	NA	NA	NA	NA
WP_019725828.1\|2172300_2172519_+	hypothetical protein	NA	NA	NA	NA
WP_019725829.1\|2172835_2173792_+	hypothetical protein	NA	NA	NA	NA
WP_019725830.1\|2173801_2174152_+	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	2.4e-20	42.0
WP_019725831.1\|2174153_2175416_+	hypothetical protein	Q56VN9	Pseudomonas_phage	2.2e-119	57.0
WP_003115206.1\|2175674_2176967_+	hypothetical protein	Q56VN8	Pseudomonas_phage	2.8e-247	94.2
WP_019725833.1\|2176966_2177950_+\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	1.8e-92	52.3
WP_003114155.1\|2178163_2178415_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_016263850.1\|2178424_2178772_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_079982116.1\|2178991_2180293_+\|integrase	integrase family protein	A0A248SL35	Klebsiella_phage	1.7e-37	32.7
WP_124207766.1\|2180308_2180929_+	hypothetical protein	NA	NA	NA	NA
WP_033989513.1\|2180925_2181132_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_058171606.1\|2181121_2181526_-	hypothetical protein	NA	NA	NA	NA
WP_088376624.1\|2181522_2181906_-	hypothetical protein	NA	NA	NA	NA
WP_088376625.1\|2181902_2183783_-	cytosine methyltransferase	Q5QF27	Pseudomonas_virus	5.2e-133	43.3
WP_058171612.1\|2183779_2184259_-	hypothetical protein	NA	NA	NA	NA
WP_015649068.1\|2184268_2184508_-	hypothetical protein	NA	NA	NA	NA
WP_058171614.1\|2184504_2185131_-	hypothetical protein	NA	NA	NA	NA
WP_034003678.1\|2185180_2185498_-	transcriptional regulator	NA	NA	NA	NA
WP_034003676.1\|2185494_2185803_-	hypothetical protein	NA	NA	NA	NA
WP_058171616.1\|2185956_2186250_-	DNA-binding protein	NA	NA	NA	NA
WP_042158701.1\|2186259_2186571_-	hypothetical protein	NA	NA	NA	NA
2186248:2186264	attR	NA	NA	NA	NA
WP_071540605.1\|2186853_2187567_-	helix-turn-helix domain-containing protein	F1C599	Cronobacter_phage	9.1e-22	35.3
WP_019726484.1\|2187673_2187928_+	hypothetical protein	A0A2H4JA29	uncultured_Caudovirales_phage	1.5e-06	45.6
WP_058171618.1\|2188244_2188799_+	hypothetical protein	NA	NA	NA	NA
WP_003130865.1\|2188791_2189001_+	hypothetical protein	NA	NA	NA	NA
WP_058171622.1\|2191206_2191578_+	hypothetical protein	NA	NA	NA	NA
WP_019726481.1\|2192150_2192501_+	hypothetical protein	B5TK61	Pseudomonas_phage	2.8e-16	48.6
WP_023087718.1\|2193487_2194078_+	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	8.8e-47	54.5
WP_023120426.1\|2194081_2196097_+\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	5.0e-259	64.0
WP_019396964.1\|2196108_2196333_+	hypothetical protein	NA	NA	NA	NA
WP_088376626.1\|2196332_2197799_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	3.0e-176	66.2
WP_031630942.1\|2197782_2198955_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	2.3e-86	49.1
WP_088376627.1\|2198951_2199587_+\|head	head decoration protein	NA	NA	NA	NA

DBSCAN-SWA_4

2318683 : 2366008

Pseudomonas_phage(88.24%)

lysis,integrase,holin,portal,terminase,protease

attL 2322017:2322033|attR 2346374:2346390

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088376638.1\|2318683_2319016_+	hypothetical protein	Q56VN8	Pseudomonas_phage	5.9e-48	79.1
WP_004353146.1\|2319015_2319291_+	hypothetical protein	Q56VN7	Pseudomonas_phage	1.1e-23	60.4
WP_074197746.1\|2319464_2320019_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.9e-43	51.1
WP_124136459.1\|2320235_2320487_+	hypothetical protein	NA	NA	NA	NA
WP_023081971.1\|2320516_2321383_+	hypothetical protein	NA	NA	NA	NA
WP_014603615.1\|2321990_2322434_-	SocA family protein	I6R0L8	Salmonella_phage	4.3e-46	56.8
2322017:2322033	attL	NA	NA	NA	NA
WP_023083766.1\|2322500_2323679_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	8.7e-211	96.3
WP_023092496.1\|2324857_2325049_-	hypothetical protein	A0A1W6JTB8	Pseudomonas_phage	1.2e-29	98.4
WP_023083761.1\|2325161_2325689_-	hypothetical protein	A0A0A0YRT2	Pseudomonas_phage	1.8e-51	99.0
WP_031637080.1\|2326566_2326797_-	Arc family DNA-binding protein	A0A1W6JTB4	Pseudomonas_phage	1.4e-27	85.1
WP_049250083.1\|2326876_2327611_-	Rha family transcriptional regulator	A0A1W6DWH5	Salmonella_phage	2.4e-17	45.6
WP_021205287.1\|2327640_2327907_-	hypothetical protein	NA	NA	NA	NA
WP_021205288.1\|2328426_2328660_-	hypothetical protein	A0A0A0YQ28	Pseudomonas_phage	6.6e-38	100.0
WP_088376639.1\|2328662_2329046_-	helix-turn-helix transcriptional regulator	A0A1W6JTA9	Pseudomonas_phage	1.4e-53	94.9
WP_088376640.1\|2329231_2329906_-	helix-turn-helix transcriptional regulator	A0A125RNS6	Pseudomonas_phage	1.7e-123	97.3
WP_015980931.1\|2329993_2330215_+	helix-turn-helix domain-containing protein	A0A125RNS7	Pseudomonas_phage	3.8e-35	97.3
WP_157738797.1\|2330842_2331160_+	hypothetical protein	A0A1W6JTB5	Pseudomonas_phage	3.6e-39	79.0
WP_088376641.1\|2331156_2331435_+	hypothetical protein	A0A1W6JTC3	Pseudomonas_phage	3.0e-37	95.7
WP_088376642.1\|2331735_2332044_+	hypothetical protein	NA	NA	NA	NA
WP_033869214.1\|2332036_2332333_+	hypothetical protein	NA	NA	NA	NA
WP_022580274.1\|2332329_2332659_+	hypothetical protein	NA	NA	NA	NA
WP_022580273.1\|2332651_2332987_+	hypothetical protein	NA	NA	NA	NA
WP_022580271.1\|2333746_2333977_+	hypothetical protein	A0A1W6JTF8	Pseudomonas_phage	6.7e-27	76.3
WP_015648201.1\|2333973_2334813_+	helix-turn-helix domain-containing protein	A0A1W6JTD5	Pseudomonas_phage	1.1e-146	94.3
WP_003085722.1\|2334988_2335609_+	ATP-binding protein	A0A1W6JTD8	Pseudomonas_phage	2.9e-109	99.5
WP_015648202.1\|2335605_2337003_+	AAA family ATPase	A0A1W6JTB3	Pseudomonas_phage	1.7e-266	100.0
WP_010791980.1\|2336999_2337278_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	1.1e-44	98.9
WP_004353175.1\|2337274_2337664_+	hypothetical protein	A0A1W6JTD2	Pseudomonas_phage	2.2e-70	99.2
WP_021205299.1\|2338031_2338730_+	Rha protein	S5MQL6	Escherichia_phage	4.1e-27	61.2
WP_004353177.1\|2338814_2339147_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.9e-54	96.4
WP_088143940.1\|2339143_2339761_+	glycoside hydrolase family 19 protein	A0A1B0Z086	Pseudomonas_phage	5.2e-106	92.7
WP_071537640.1\|2339760_2340315_+	hypothetical protein	A0A2D1GDR6	Mycobacterium_phage	1.8e-17	45.3
WP_088143941.1\|2340314_2340785_+\|lysis	lysis protein	A0A1B0Z001	Pseudomonas_phage	3.5e-70	91.7
WP_003159066.1\|2340781_2341525_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	6.4e-135	99.6
WP_010791973.1\|2342160_2344125_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	0.0e+00	99.5
WP_003159476.1\|2344115_2344331_+	hypothetical protein	A0A1B0YZU1	Pseudomonas_phage	8.5e-32	100.0
WP_010791972.1\|2344330_2345977_+\|portal	phage portal protein	A0A1B0YZU4	Pseudomonas_phage	0.0e+00	99.3
WP_086886672.1\|2345936_2348030_+\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	0.0e+00	98.9
2346374:2346390	attR	NA	NA	NA	NA
WP_003129701.1\|2348096_2348414_+	DUF2190 family protein	A0A1W6JT93	Pseudomonas_phage	4.6e-50	100.0
WP_010791970.1\|2348410_2348740_+	hypothetical protein	A0A1W6JT71	Pseudomonas_phage	3.1e-57	100.0
WP_088376643.1\|2348736_2349207_+	hypothetical protein	A0A1W6JT75	Pseudomonas_phage	4.5e-86	98.1
WP_010791968.1\|2349210_2349405_+	hypothetical protein	A0A1W6JT79	Pseudomonas_phage	3.0e-28	100.0
WP_010791967.1\|2349406_2350159_+	hypothetical protein	A0A1W6JT83	Pseudomonas_phage	9.6e-139	100.0
WP_052342415.1\|2350240_2350762_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	A0A1B0YZT9	Pseudomonas_phage	8.8e-91	98.8
WP_071534544.1\|2350833_2351361_+	DUF4124 domain-containing protein	A0A1B0Z2K9	Pseudomonas_phage	2.5e-93	99.4
WP_010791966.1\|2351424_2351727_+	hypothetical protein	A0A1B0YZV7	Pseudomonas_phage	7.0e-48	99.0
WP_034064393.1\|2351829_2354313_+	tape measure protein	A0A1B0YZV6	Pseudomonas_phage	0.0e+00	98.2
WP_023124659.1\|2354872_2356570_+	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	3.1e-310	94.5
WP_023124660.1\|2356572_2356983_+	hypothetical protein	A0A1W6JT78	Pseudomonas_phage	4.4e-53	92.6
WP_034004904.1\|2356982_2357528_+	hypothetical protein	A0A1W6JT85	Pseudomonas_phage	7.0e-99	98.3
WP_034004903.1\|2357938_2359597_+	hypothetical protein	A0A0A0YRR5	Pseudomonas_phage	0.0e+00	97.1
WP_023103657.1\|2360205_2360397_+	hypothetical protein	A0A1B0Z2L3	Pseudomonas_phage	7.8e-29	96.8
WP_087930962.1\|2360401_2360962_+	hypothetical protein	A0A1B0YZW5	Pseudomonas_phage	5.0e-100	99.5
WP_003129767.1\|2360961_2361243_+	hypothetical protein	A0A0A0YR51	Pseudomonas_phage	2.5e-44	96.8
WP_043155338.1\|2361837_2362140_+	hypothetical protein	A0A0S2SY61	Pseudomonas_phage	8.8e-43	87.0
WP_088376645.1\|2362136_2362376_+	hypothetical protein	A0A0S2SY98	Pseudomonas_phage	1.7e-33	93.5
WP_019486480.1\|2362448_2362673_+	hypothetical protein	A0A1W6JT95	Pseudomonas_phage	4.7e-33	98.6
WP_003109435.1\|2363308_2364187_-	hypothetical protein	NA	NA	NA	NA
WP_003454564.1\|2364274_2364958_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_003085798.1\|2365066_2366008_+	alpha/beta hydrolase	A0A1D8EUH4	Mycobacterium_phage	4.4e-08	33.3

DBSCAN-SWA_5

3408732 : 3456885

Pseudomonas_phage(82.76%)

tRNA,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098032.1\|3408732_3410403_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	4.8e-199	60.3
WP_003120296.1\|3410412_3411795_+\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	6.9e-42	31.6
WP_003450083.1\|3411850_3412705_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	6.6e-27	33.9
WP_003098018.1\|3414330_3414672_-	helix-turn-helix domain-containing protein	Q9MC86	Pseudomonas_phage	5.4e-49	100.0
WP_088376685.1\|3414823_3415171_-	hypothetical protein	B5WZV0	Pseudomonas_phage	2.6e-14	64.3
WP_015980354.1\|3415167_3415494_-	hypothetical protein	Q9MC83	Pseudomonas_phage	2.6e-56	100.0
WP_088376845.1\|3415490_3416180_-	hypothetical protein	Q9MC82	Pseudomonas_phage	1.2e-122	98.7
WP_049264384.1\|3416269_3416497_-	hypothetical protein	A0A0S2SY23	Pseudomonas_phage	9.2e-37	100.0
WP_088376846.1\|3416493_3416763_-	hypothetical protein	H2BDE3	Pseudomonas_virus	2.1e-27	69.8
WP_016046775.1\|3416774_3417260_-	hypothetical protein	H2BDE5	Pseudomonas_virus	5.3e-90	100.0
WP_088376686.1\|3417543_3417843_-	hypothetical protein	A0A0S2SY28	Pseudomonas_phage	3.1e-56	97.0
WP_088376687.1\|3417835_3418036_-	hypothetical protein	A0A0S2SY76	Pseudomonas_phage	8.4e-34	98.5
WP_157738802.1\|3418025_3418403_-	hypothetical protein	W6MVL9	Pseudomonas_phage	8.8e-24	83.1
WP_157738805.1\|3418395_3419109_-	hypothetical protein	A0A125RNQ6	Pseudomonas_phage	9.3e-67	58.8
WP_088376689.1\|3419101_3419704_-	hypothetical protein	A0A0S2SY72	Pseudomonas_phage	4.3e-41	52.8
WP_033949066.1\|3420750_3420954_-	hypothetical protein	D4FUM3	Pseudomonas_phage	1.0e-31	100.0
WP_023127368.1\|3422081_3422828_-	phage recombination protein Bet	A0A0S2SY88	Pseudomonas_phage	8.6e-140	99.2
WP_088376690.1\|3422835_3423900_-	hypothetical protein	B5WZW5	Pseudomonas_phage	9.6e-84	95.8
WP_088376848.1\|3424206_3424971_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	6.0e-72	46.4
WP_023099013.1\|3425083_3425473_-	hypothetical protein	A0A125RNR7	Pseudomonas_phage	4.9e-70	100.0
WP_088376691.1\|3425469_3425997_-	hypothetical protein	A0A127KN62	Pseudomonas_phage	6.7e-54	60.1
WP_033991560.1\|3425993_3426359_-	hypothetical protein	A0A125RNR9	Pseudomonas_phage	8.1e-67	99.2
WP_124083087.1\|3426355_3426586_-	hypothetical protein	NA	NA	NA	NA
WP_023910173.1\|3426927_3427119_-	hypothetical protein	A0A0A1IV27	Pseudomonas_phage	1.4e-09	48.4
WP_088376692.1\|3427269_3427647_-	hypothetical protein	W6MWX7	Pseudomonas_phage	1.9e-63	93.6
WP_124205370.1\|3428488_3428803_-	hypothetical protein	NA	NA	NA	NA
WP_157738825.1\|3429626_3430277_-	transcriptional regulator	A0A059VA53	Pseudomonas_phage	3.2e-58	63.6
WP_023465480.1\|3430463_3430637_+	hypothetical protein	F8TUK2	EBPR_podovirus	8.4e-06	41.1
WP_088376695.1\|3430638_3430959_+	hypothetical protein	A0A0U4K5A6	Pseudomonas_phage	4.7e-18	96.0
WP_023127615.1\|3430991_3431336_+	hypothetical protein	A0A0U4JVL6	Pseudomonas_phage	6.1e-56	100.0
WP_023464591.1\|3431464_3431635_+	hypothetical protein	NA	NA	NA	NA
WP_003140700.1\|3431672_3432137_+	hypothetical protein	A0A0U4B0E3	Pseudomonas_phage	1.9e-81	99.4
WP_023081925.1\|3432334_3432931_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_073663221.1\|3432942_3433638_+	helix-turn-helix domain-containing protein	H2BD69	Pseudomonas_phage	1.0e-30	62.5
WP_088376696.1\|3433630_3435016_+	replicative DNA helicase	A0A127KNK8	Pseudomonas_phage	3.2e-124	52.6
WP_033982931.1\|3435128_3435638_+	hypothetical protein	H2BDI1	Pseudomonas_virus	1.7e-86	98.8
WP_088376697.1\|3435639_3435840_+	TraR/DksA family transcriptional regulator	A0A0S2SYW7	Pseudomonas_phage	1.1e-28	96.9
WP_023082528.1\|3435839_3436091_+	hypothetical protein	NA	NA	NA	NA
WP_023082527.1\|3436083_3436671_+	DUF1367 family protein	Q9MC49	Pseudomonas_phage	7.3e-110	99.5
WP_088143950.1\|3436667_3436928_+	hypothetical protein	A0A0S2SYB2	Pseudomonas_phage	2.1e-08	47.1
WP_003101068.1\|3436924_3437134_+	hypothetical protein	NA	NA	NA	NA
WP_088376698.1\|3437351_3437933_+	recombination protein NinG	A0A125RNK9	Pseudomonas_phage	3.2e-97	90.2
WP_088376699.1\|3437929_3438616_+	hypothetical protein	A0A0S2SYA9	Pseudomonas_phage	3.0e-123	93.0
WP_023434898.1\|3439008_3439341_+	peptidase M48	A0A125RNL3	Pseudomonas_phage	2.6e-56	100.0
WP_014603758.1\|3439343_3439616_+	hypothetical protein	A0A125RNL4	Pseudomonas_phage	3.1e-39	97.8
WP_088376700.1\|3439606_3440191_+\|terminase	terminase small subunit	A0A2P9HY59	Yersinia_phage	1.5e-59	70.7
WP_034017705.1\|3440180_3441644_+	phage DNA Packaging protein	G0ZND4	Cronobacter_phage	7.6e-241	83.5
WP_014603761.1\|3441643_3441841_+	hypothetical protein	H2BD77	Pseudomonas_phage	2.3e-28	100.0
WP_088376701.1\|3441843_3443214_+	DUF1073 domain-containing protein	H2BD78	Pseudomonas_phage	2.1e-261	97.4
WP_088376702.1\|3443170_3444100_+\|head	phage head morphogenesis protein	H2BD79	Pseudomonas_phage	1.1e-168	98.1
WP_031690845.1\|3444103_3445381_+	hypothetical protein	H2BD80	Pseudomonas_phage	1.1e-214	99.3
WP_023098990.1\|3445384_3445834_+	hypothetical protein	A0A125RNM2	Pseudomonas_phage	5.6e-78	100.0
WP_088376703.1\|3445849_3446941_+	hypothetical protein	H2BD82	Pseudomonas_phage	4.6e-190	91.8
WP_079385787.1\|3446950_3447142_+	glycoprotein	H2BD83	Pseudomonas_phage	3.0e-28	96.8
WP_014603768.1\|3447225_3447627_+	hypothetical protein	J7HX89	Pseudomonas_phage	7.8e-71	98.5
WP_033997100.1\|3447623_3447944_+	hypothetical protein	J7I4I8	Pseudomonas_phage	4.8e-55	94.3
WP_016046685.1\|3448345_3448720_+	hypothetical protein	H2BD88	Pseudomonas_phage	1.3e-67	100.0
WP_016046686.1\|3448734_3449730_+	hypothetical protein	H2BD89	Pseudomonas_phage	2.5e-171	100.0
WP_088171393.1\|3449726_3450344_+	glycoprotein	A0A125RNN1	Pseudomonas_phage	5.7e-113	99.0
WP_088171392.1\|3450343_3452833_+	tape measure protein	A0A127KNB7	Pseudomonas_phage	0.0e+00	90.3
WP_016852774.1\|3452829_3453297_+	hypothetical protein	H2BD92	Pseudomonas_phage	1.4e-92	99.4
WP_034074108.1\|3453280_3453772_+	DUF1833 family protein	J7I404	Pseudomonas_phage	1.8e-90	98.2
WP_023082501.1\|3453776_3454184_+	hypothetical protein	J7HX80	Pseudomonas_phage	1.2e-74	100.0
WP_088376704.1\|3454155_3456885_+	hypothetical protein	H2BD95	Pseudomonas_phage	0.0e+00	98.8

DBSCAN-SWA_6

4509931 : 4516825

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003090386.1\|4509931_4510600_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
WP_003097619.1\|4510710_4511106_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.5e-47	71.3
WP_003090389.1\|4511102_4511462_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090391.1\|4511461_4511767_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090393.1\|4511763_4512099_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.3e-38	69.4
WP_003097625.1\|4512095_4513079_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.5e-141	74.0
WP_003097628.1\|4513166_4514141_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003113366.1\|4514145_4515543_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097631.1\|4515544_4516825_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4

DBSCAN-SWA_7

4747398 : 4808018

Acidithiobacillus_phage(28.57%)

transposase,integrase

attL 4754135:4754151|attR 4814743:4814759

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003299771.1\|4747398_4750392_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	5.7e-259	47.6
WP_088376760.1\|4750404_4750617_-	hypothetical protein	NA	NA	NA	NA
WP_003150552.1\|4750624_4750900_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_003089115.1\|4750912_4751263_-	mercury transporter MerT	NA	NA	NA	NA
WP_003089120.1\|4751337_4751736_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_041506131.1\|4751725_4752088_-	hypothetical protein	NA	NA	NA	NA
WP_041506132.1\|4752105_4752822_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-14	26.0
WP_023048108.1\|4752821_4753580_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	7.4e-14	28.0
WP_023048107.1\|4753576_4754485_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
4754135:4754151	attL	NA	NA	NA	NA
WP_024075423.1\|4755609_4757061_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_023048105.1\|4757170_4758538_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_041506133.1\|4758776_4760006_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_023628647.1\|4760090_4761068_-	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_023048102.1\|4761260_4761980_+	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_082041849.1\|4762356_4763316_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023662936.1\|4763413_4765504_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_023662937.1\|4765539_4767285_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_052062200.1\|4767585_4768959_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_031637015.1\|4769458_4770631_-	hypothetical protein	NA	NA	NA	NA
WP_041506134.1\|4770784_4772146_-	allantoin permease	NA	NA	NA	NA
WP_023662939.1\|4772792_4773737_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_023048095.1\|4773737_4774502_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_023048094.1\|4774558_4775797_-	CoA transferase	NA	NA	NA	NA
WP_023048093.1\|4775823_4777026_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_023048092.1\|4777035_4778577_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_023628973.1\|4778580_4779366_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_023048090.1\|4779602_4780469_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_023048089.1\|4780530_4781685_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_023048087.1\|4782588_4782786_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_082041850.1\|4782825_4783434_-	hypothetical protein	NA	NA	NA	NA
WP_010953412.1\|4783728_4784322_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_041506135.1\|4784712_4785333_+	glutathione S-transferase	NA	NA	NA	NA
WP_010466266.1\|4786442_4787711_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_019692570.1\|4788934_4789960_+\|transposase	IS110-like element IS1383 family transposase	NA	NA	NA	NA
WP_003118432.1\|4790504_4791332_+	phosphonate ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.4e-07	25.7
WP_010562501.1\|4791328_4792192_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010466252.1\|4792200_4793028_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_003127732.1\|4793036_4794047_+	phosphonate dehydrogenase PtxD	NA	NA	NA	NA
WP_003127731.1\|4794040_4794910_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019692570.1\|4795222_4796248_-\|transposase	IS110-like element IS1383 family transposase	NA	NA	NA	NA
WP_041506137.1\|4797784_4799470_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.2e-165	57.8
WP_041506138.1\|4799357_4800107_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.9e-80	59.9
WP_041506139.1\|4800739_4801084_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	6.3e-37	66.4
WP_041506140.1\|4801778_4802255_-	cytochrome P460 family protein	NA	NA	NA	NA
WP_041506141.1\|4802906_4803314_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_041506142.1\|4803310_4805200_-\|integrase	integrase	NA	NA	NA	NA
WP_041506143.1\|4805196_4806873_-	hypothetical protein	NA	NA	NA	NA
WP_041506144.1\|4806872_4808018_-\|integrase	site-specific integrase	NA	NA	NA	NA
4814743:4814759	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4868283 : 4919614

Pseudomonas_phage(59.57%)

tail,terminase,integrase,tRNA

attL 4897656:4897673|attR 4922306:4922323

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079382813.1\|4868283_4869489_+	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	2.7e-42	33.3
WP_004354886.1\|4869689_4869935_-	hypothetical protein	NA	NA	NA	NA
WP_031628295.1\|4869931_4870420_-	hypothetical protein	NA	NA	NA	NA
WP_003160542.1\|4870524_4870788_-	hypothetical protein	Q9MC87	Pseudomonas_phage	9.0e-44	94.3
WP_088376762.1\|4870823_4871087_-	hypothetical protein	H2BDD7	Pseudomonas_virus	5.3e-36	89.5
WP_088376763.1\|4871083_4871452_-	hypothetical protein	H2BDA0	Pseudomonas_phage	1.4e-29	63.1
WP_088376764.1\|4871448_4872078_-	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	6.2e-107	92.3
WP_088376765.1\|4872161_4873316_+	polymerase	H2BD97	Pseudomonas_phage	8.2e-206	97.9
WP_088376766.1\|4873449_4875699_-	hypothetical protein	H2BD96	Pseudomonas_phage	0.0e+00	95.4
WP_088376767.1\|4875765_4878513_-	hypothetical protein	A0A0H5ART3	Pseudomonas_phage	1.8e-238	47.8
WP_033994431.1\|4878478_4878892_-	hypothetical protein	B5WZT7	Pseudomonas_phage	8.6e-41	61.5
WP_034051649.1\|4878895_4879381_-	DUF1833 family protein	A0A2H4J983	uncultured_Caudovirales_phage	4.1e-34	45.0
WP_052168610.1\|4879382_4879853_-	hypothetical protein	A0A125RNN3	Pseudomonas_phage	5.1e-29	41.1
WP_073625042.1\|4879852_4883134_-\|tail	tail length tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	1.1e-93	35.1
WP_071536105.1\|4883084_4883360_-	hypothetical protein	NA	NA	NA	NA
WP_033977283.1\|4883479_4883968_-	hypothetical protein	NA	NA	NA	NA
WP_088376768.1\|4884026_4885196_-	Ig-like domain-containing protein	A0A059VG08	Pseudomonas_phage	9.9e-58	39.1
WP_034049731.1\|4885257_4885665_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_033994427.1\|4885661_4886057_-	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.4e-27	49.2
WP_078465395.1\|4886056_4886521_-	hypothetical protein	A0A059VA70	Pseudomonas_phage	2.3e-26	48.4
WP_043514493.1\|4886435_4887428_-	hypothetical protein	A0A2H4IY91	uncultured_Caudovirales_phage	2.3e-84	49.6
WP_043514523.1\|4887424_4887943_-	hypothetical protein	A0A059VG19	Pseudomonas_phage	2.3e-38	55.3
WP_058130260.1\|4888000_4888444_-	hypothetical protein	NA	NA	NA	NA
WP_033977271.1\|4888456_4889386_-	DUF2184 domain-containing protein	L7TMZ5	Rhizobium_phage	1.4e-102	59.9
WP_009314074.1\|4889395_4889851_-	DUF2190 family protein	A0A2R3UAC1	Siphoviridae_environmental_samples	6.4e-37	58.4
WP_034011510.1\|4889850_4890972_-	DUF2213 domain-containing protein	A0A2H4J6J7	uncultured_Caudovirales_phage	6.3e-94	65.7
WP_088376769.1\|4890974_4892783_-	DUF1073 domain-containing protein	A0A2H4J4I9	uncultured_Caudovirales_phage	8.3e-213	61.6
WP_088376770.1\|4892782_4894069_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	5.8e-144	58.6
WP_058147969.1\|4894055_4894652_-\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	1.3e-45	59.9
WP_009314069.1\|4894706_4894925_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_079388685.1\|4894987_4895281_-	hypothetical protein	A0A125RNL4	Pseudomonas_phage	1.0e-19	58.6
WP_009314067.1\|4895283_4895607_-	hypothetical protein	A0A125RNL3	Pseudomonas_phage	4.8e-39	76.4
WP_088376771.1\|4895722_4896592_-	hypothetical protein	J7HXH6	Pseudomonas_phage	5.1e-160	94.8
WP_031635913.1\|4896620_4897064_-	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	6.1e-77	98.6
WP_047106411.1\|4897056_4897665_-	hypothetical protein	A0A2H4J6S4	uncultured_Caudovirales_phage	6.8e-42	44.4
4897656:4897673	attL	NA	NA	NA	NA
WP_088376772.1\|4897714_4898599_-	hypothetical protein	NA	NA	NA	NA
WP_009314063.1\|4898602_4899199_-	hypothetical protein	NA	NA	NA	NA
WP_003116750.1\|4899238_4899469_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_079867890.1\|4899516_4900263_+	helix-turn-helix domain-containing protein	A0A2H4J6J6	uncultured_Caudovirales_phage	5.2e-44	47.6
WP_009314061.1\|4900286_4900886_+	hypothetical protein	NA	NA	NA	NA
WP_073672064.1\|4901434_4901911_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_033992833.1\|4902787_4903159_+	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.2e-62	98.4
WP_003099037.1\|4903768_4903990_+	hypothetical protein	H2BD53	Pseudomonas_phage	1.2e-33	100.0
WP_034015934.1\|4903986_4904196_+	hypothetical protein	NA	NA	NA	NA
WP_033994407.1\|4904205_4905114_+	endonuclease	Q858E0	Salmonella_phage	1.6e-124	71.6
WP_034010854.1\|4905126_4906026_+	recombination protein RecT	Q858E1	Salmonella_phage	2.4e-104	73.6
WP_009314053.1\|4906032_4906233_+	hypothetical protein	J7I437	Pseudomonas_phage	1.9e-30	100.0
WP_034015932.1\|4906245_4907226_+	cell division protein FtsK	H2BD47	Pseudomonas_phage	3.0e-92	61.2
WP_088376773.1\|4907229_4908972_+	AAA family ATPase	H2BD46	Pseudomonas_phage	2.6e-227	73.5
WP_003451753.1\|4909021_4909735_+	exodeoxyribonuclease X	A0A059VJT9	Pseudomonas_phage	2.5e-51	47.7
WP_124078898.1\|4909898_4910225_-	hypothetical protein	NA	NA	NA	NA
WP_023094669.1\|4910310_4910982_+	hypothetical protein	Q5QF30	Pseudomonas_virus	1.2e-103	80.8
WP_003126887.1\|4910978_4911539_+	hypothetical protein	H2BD41	Pseudomonas_phage	3.8e-100	93.7
WP_034014066.1\|4911535_4911901_+	hypothetical protein	H2BD40	Pseudomonas_phage	9.6e-60	94.6
WP_003131143.1\|4911897_4912404_+	hypothetical protein	L7TI83	Pseudomonas_virus	1.2e-87	95.8
WP_088376774.1\|4912501_4913236_+	hypothetical protein	A0A0U4JEF1	Pseudomonas_phage	3.4e-48	56.9
WP_029982130.1\|4913889_4914276_+	hypothetical protein	A0A2K8HZQ6	Pseudomonas_phage	1.4e-64	99.2
WP_003160559.1\|4914351_4914636_+	hypothetical protein	A0A2K8HN48	Pseudomonas_phage	8.0e-46	100.0
WP_033937549.1\|4914645_4915752_-\|integrase	tyrosine-type recombinase/integrase	L7TP61	Pseudomonas_virus	3.9e-213	99.5
WP_088376775.1\|4915855_4916860_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_003090868.1\|4916939_4917863_+	transaldolase	A0A1D8KMI9	Synechococcus_phage	6.5e-12	30.0
WP_003104052.1\|4917950_4918433_-	STAS domain-containing protein	NA	NA	NA	NA
WP_003119890.1\|4918429_4919614_-	SpoIIE family protein phosphatase	Q56AR1	Bacillus_thuringiensis_phage	7.3e-08	31.9
4922306:4922323	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022002

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection