CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021997	Lactiplantibacillus plantarum strain LPL-1 chromosome, complete genome	0 crisprs	csa3,cas3,DEDDh,DinG,WYL	0	0	7	0
NZ_CP021998	Lactiplantibacillus plantarum strain LPL-1 plasmid pPLP-1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

757900 : 766411

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003645861.1\|757900_758383_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-16	41.0
WP_015380738.1\|758366_759497_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_003642587.1\|759499_760231_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.6e-37	37.3
WP_003642588.1\|760232_760487_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_011101895.1\|760486_761167_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003645864.1\|761159_763379_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.5e-144	39.3
WP_053267268.1\|763363_764818_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.3e-50	34.0
WP_003645866.1\|764814_765840_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	2.7e-59	41.0
WP_003645867.1\|765832_766411_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-21	33.9

DBSCAN-SWA_2

955893 : 990088

Lactobacillus_phage(80.0%)

integrase,portal,capsid,tail,terminase

attL 955654:955670|attR 995726:995742

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
955654:955670	attL	NA	NA	NA	NA
WP_053267716.1\|955893_957015_-\|integrase	site-specific integrase	D6PSS4	Lactobacillus_phage	4.9e-46	32.4
WP_053267717.1\|957101_958016_-	DNA adenine methylase	NA	NA	NA	NA
WP_053267718.1\|958069_959818_-	AAA family ATPase	NA	NA	NA	NA
WP_016511204.1\|959993_960170_-	hypothetical protein	A0A2P0ZL93	Lactobacillus_phage	3.9e-11	53.4
WP_053267719.1\|960445_961507_-	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	4.6e-86	45.1
WP_053267720.1\|961592_962051_-	hypothetical protein	NA	NA	NA	NA
WP_053267721.1\|962151_962574_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_053267722.1\|962588_963107_-	helix-turn-helix domain-containing protein	S6C481	Thermus_phage	9.3e-16	34.8
WP_033608054.1\|963248_963503_+	helix-turn-helix transcriptional regulator	A0A2H4JFN1	uncultured_Caudovirales_phage	1.5e-06	41.3
WP_080371147.1\|963499_963670_+	hypothetical protein	NA	NA	NA	NA
WP_053267723.1\|963681_963987_+	DUF771 domain-containing protein	NA	NA	NA	NA
WP_053267724.1\|964054_964567_+	helix-turn-helix transcriptional regulator	D6PST4	Lactobacillus_phage	2.3e-27	42.9
WP_024002536.1\|965068_965599_+	host-nuclease inhibitor Gam family protein	E9LUU0	Lactobacillus_phage	6.1e-55	59.2
WP_052748123.1\|965610_966576_+	hypothetical protein	A6M982	Geobacillus_virus	5.3e-65	54.5
WP_053267725.1\|966655_967564_+	DnaD domain protein	NA	NA	NA	NA
WP_013355745.1\|967560_967848_+	hypothetical protein	NA	NA	NA	NA
WP_053267726.1\|967844_968363_+	hypothetical protein	O03915	Lactobacillus_phage	4.3e-37	52.3
WP_053267727.1\|968359_968740_+	endodeoxyribonuclease	NA	NA	NA	NA
WP_053267728.1\|968732_968930_+	hypothetical protein	NA	NA	NA	NA
WP_053267729.1\|968922_969333_+	hypothetical protein	K4I239	Lactobacillus_phage	2.3e-33	55.3
WP_053267730.1\|969329_969776_+	DUF1642 domain-containing protein	A0A2P0ZKT5	Lactobacillus_phage	1.8e-20	41.4
WP_053267731.1\|970085_970553_+	hypothetical protein	B4XYT9	Lactobacillus_phage	1.9e-15	40.0
WP_080371149.1\|971567_972146_+	sce7726 family protein	NA	NA	NA	NA
WP_053267732.1\|972184_973129_-	hypothetical protein	NA	NA	NA	NA
WP_053267733.1\|973348_973612_+	hypothetical protein	A0A1S5RCN3	Lactobacillus_phage	2.4e-28	69.8
WP_053267734.1\|974501_975845_+\|terminase	PBSX family phage terminase large subunit	O03927	Lactobacillus_phage	3.8e-263	97.8
WP_053267735.1\|975853_977380_+\|portal	phage portal protein	O03928	Lactobacillus_phage	3.7e-246	81.9
WP_053267736.1\|977376_978519_+\|capsid	capsid protein	O03929	Lactobacillus_phage	3.6e-169	93.7
WP_053267738.1\|979215_980097_+	hypothetical protein	U3PDP8	Lactobacillus_phage	1.1e-90	58.4
WP_053267739.1\|980116_980545_+	hypothetical protein	NA	NA	NA	NA
WP_053267740.1\|980541_980895_+\|capsid	capsid protein	O03932	Lactobacillus_phage	3.1e-55	89.7
WP_053267798.1\|980900_981248_+\|capsid	capsid protein	O03933	Lactobacillus_phage	5.0e-50	84.3
WP_053267741.1\|981247_981652_+	hypothetical protein	O03934	Lactobacillus_phage	4.8e-68	98.5
WP_053267742.1\|981685_982201_+	hypothetical protein	O03972	Lactobacillus_phage	5.9e-79	89.0
WP_053267743.1\|982253_982685_+	hypothetical protein	O03935	Lactobacillus_phage	1.4e-73	97.2
WP_053267744.1\|982690_983314_+	hypothetical protein	O03936	Lactobacillus_phage	5.4e-103	95.5
WP_053267745.1\|983317_988153_+	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	0.0e+00	81.0
WP_053267746.1\|988142_988982_+\|tail	phage tail family protein	NA	NA	NA	NA
WP_053267747.1\|988981_990088_+\|tail	phage tail protein	A0A0B5CYL4	Listeria_phage	1.0e-43	35.0
995726:995742	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1831052 : 1840900

Lactobacillus_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053267625.1\|1831052_1832048_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	5.3e-52	38.8
WP_015380221.1\|1832675_1832813_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_053267624.1\|1832908_1833349_+	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	4.0e-76	98.6
WP_053267623.1\|1833419_1833980_-	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	1.0e-100	99.5
WP_046810985.1\|1834067_1836506_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	99.8
WP_053267622.1\|1836508_1837123_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.2e-110	99.5
WP_003643099.1\|1837466_1838414_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.7e-178	100.0
WP_053267621.1\|1838599_1839571_+	peptidase S41	A0A2P0ZL68	Lactobacillus_phage	2.5e-179	97.5
WP_053267620.1\|1839661_1840900_-	hypothetical protein	A0A2P0ZL72	Lactobacillus_phage	5.7e-213	96.1

DBSCAN-SWA_4

2035857 : 2103697

Lactobacillus_phage(72.34%)

head,integrase,transposase,holin,protease,portal,capsid,tail,terminase,tRNA

attL 2046986:2047001|attR 2095941:2095956

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114894109.1\|2035857_2036733_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-20	28.9
WP_027822961.1\|2036741_2037449_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_053267088.1\|2037609_2038173_-	hypothetical protein	NA	NA	NA	NA
WP_033611449.1\|2038604_2039045_-	hypothetical protein	NA	NA	NA	NA
WP_080371090.1\|2039234_2039399_+	hypothetical protein	NA	NA	NA	NA
WP_021730634.1\|2039766_2040633_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_053267089.1\|2040625_2041933_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_003643301.1\|2042065_2042506_+	universal stress protein	NA	NA	NA	NA
WP_154566808.1\|2042917_2043088_-	hypothetical protein	NA	NA	NA	NA
WP_053267090.1\|2043320_2043701_-\|holin	holin	A0A2P0ZLG6	Lactobacillus_phage	7.8e-12	63.2
WP_053267091.1\|2043711_2043975_-	hemolysin XhlA family protein	E9LUR9	Lactobacillus_phage	2.8e-37	97.7
WP_053267130.1\|2043974_2045087_-	LysM peptidoglycan-binding domain-containing protein	O03950	Lactobacillus_phage	2.5e-34	36.4
WP_053267092.1\|2046061_2046313_-	hypothetical protein	A0A2K9VDF6	Lactobacillus_phage	4.2e-30	97.2
WP_053267093.1\|2046305_2048924_-	hypothetical protein	E9LUR4	Lactobacillus_phage	9.0e-184	62.9
2046986:2047001	attL	NA	NA	NA	NA
WP_053267094.1\|2048939_2051339_-\|tail	phage tail protein	E9LUR3	Lactobacillus_phage	0.0e+00	69.9
WP_080371098.1\|2051406_2053047_-\|tail	phage tail family protein	E9LUR2	Lactobacillus_phage	5.4e-219	65.1
WP_053267096.1\|2053187_2058410_-\|tail	phage tail protein	E9LUR1	Lactobacillus_phage	0.0e+00	76.8
WP_016058335.1\|2058422_2058614_-	hypothetical protein	E9LUR0	Lactobacillus_phage	1.5e-27	100.0
WP_053267097.1\|2058610_2058994_-	hypothetical protein	E9LUQ9	Lactobacillus_phage	8.8e-64	99.2
WP_053267098.1\|2059195_2059834_-\|tail	phage tail protein	E9LUQ8	Lactobacillus_phage	2.2e-104	90.5
WP_053267099.1\|2059834_2060218_-	hypothetical protein	E9LUQ7	Lactobacillus_phage	3.6e-65	96.9
WP_015380477.1\|2060214_2060655_-	hypothetical protein	E9LUQ6	Lactobacillus_phage	4.2e-78	97.9
WP_053267100.1\|2060644_2061007_-\|head	phage head closure protein	E9LUQ5	Lactobacillus_phage	8.3e-64	96.7
WP_053267101.1\|2060990_2061329_-\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	1.1e-52	93.8
WP_053267102.1\|2061401_2062634_-\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	2.7e-207	91.4
WP_053267103.1\|2062633_2063389_-\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	6.7e-124	93.2
WP_053267104.1\|2063366_2064560_-\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	1.1e-221	97.7
WP_053267105.1\|2064562_2064757_-	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	1.8e-25	95.3
WP_053267106.1\|2064746_2066645_-\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	0.0e+00	97.0
WP_053267107.1\|2066647_2067106_-\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	4.0e-79	96.0
WP_053267108.1\|2067266_2067548_-	hypothetical protein	NA	NA	NA	NA
WP_080371092.1\|2067580_2068048_-	HNH endonuclease	E9LUP7	Lactobacillus_phage	7.9e-83	94.8
WP_053267110.1\|2068058_2068229_-	hypothetical protein	E9LUP6	Lactobacillus_phage	5.3e-21	91.1
WP_053267111.1\|2069038_2069470_-	transcriptional regulator	E9LUP5	Lactobacillus_phage	1.7e-76	98.6
WP_053267112.1\|2069630_2070086_-	DUF1642 domain-containing protein	A0A2K9VD68	Lactobacillus_phage	4.0e-23	45.2
WP_053267113.1\|2070082_2070505_-	hypothetical protein	Q5ULS7	Lactobacillus_virus	1.0e-12	44.7
WP_154566810.1\|2070524_2070692_-	hypothetical protein	NA	NA	NA	NA
WP_053267114.1\|2070925_2071303_-	hypothetical protein	A0A1S5SCY1	Streptococcus_phage	1.3e-14	41.5
WP_053267115.1\|2071299_2071746_-	DUF1642 domain-containing protein	Q5ULV5	Lactobacillus_virus	6.0e-48	63.6
WP_080371094.1\|2071748_2072144_-	hypothetical protein	A0A2K9VD97	Lactobacillus_phage	2.0e-34	54.0
WP_154566812.1\|2072172_2072340_-	hypothetical protein	NA	NA	NA	NA
WP_100255588.1\|2072342_2072501_-	hypothetical protein	A0A2P0ZLB5	Lactobacillus_phage	3.9e-18	90.4
WP_053267117.1\|2072504_2072816_-	hypothetical protein	A0A2P0ZLB4	Lactobacillus_phage	3.2e-48	91.3
WP_053267118.1\|2072818_2073121_-	hypothetical protein	E9LUN7	Lactobacillus_phage	4.7e-44	87.0
WP_046038735.1\|2073256_2074042_-	ATP-binding protein	E9LUN6	Lactobacillus_phage	4.1e-132	91.2
WP_053267119.1\|2074041_2074839_-	hypothetical protein	Q9AZA0	Lactobacillus_prophage	6.3e-56	65.3
WP_003641373.1\|2075878_2076184_-	hypothetical protein	NA	NA	NA	NA
WP_164878069.1\|2076184_2076355_-	hypothetical protein	NA	NA	NA	NA
WP_053267120.1\|2076735_2076990_-	hypothetical protein	NA	NA	NA	NA
WP_015825329.1\|2077132_2077393_-	hypothetical protein	NA	NA	NA	NA
WP_179297125.1\|2077607_2077772_-	hypothetical protein	NA	NA	NA	NA
WP_053267121.1\|2077785_2078484_-	Rha family transcriptional regulator	D2IYT0	Enterococcus_phage	1.3e-68	60.9
WP_027823017.1\|2078549_2078801_+	hypothetical protein	NA	NA	NA	NA
WP_053267122.1\|2078905_2079658_-	phage antirepressor KilAC domain-containing protein	E9LUT0	Lactobacillus_phage	2.2e-58	96.5
WP_003644552.1\|2079670_2079886_-	hypothetical protein	NA	NA	NA	NA
WP_053267123.1\|2080142_2080475_+	helix-turn-helix transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	2.1e-29	60.0
WP_053267124.1\|2080467_2080875_+	toxin	A0A1B0Y2S4	Lactobacillus_phage	4.0e-30	47.8
WP_053267125.1\|2080939_2081815_+	hypothetical protein	NA	NA	NA	NA
WP_053267126.1\|2082976_2084158_+\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	6.9e-59	37.9
WP_053267127.1\|2084399_2085734_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.8e-38	31.2
WP_053267128.1\|2085746_2086754_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_003638174.1\|2086942_2087143_-	cold-shock protein	Q9AZD3	Lactococcus_phage	3.1e-20	71.4
WP_053267129.1\|2087486_2087852_+	DUF4828 domain-containing protein	NA	NA	NA	NA
WP_088467706.1\|2088050_2089739_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.8e-92	41.3
WP_053267260.1\|2089770_2090547_-	lysozyme	A0A141HSE6	Bacillus_phage	2.6e-06	31.1
WP_003644133.1\|2090571_2091450_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_053267259.1\|2091574_2092459_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_053267258.1\|2092451_2093768_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_053267257.1\|2094016_2096356_-	cation-translocating P-type ATPase	M1HI01	Paramecium_bursaria_Chlorella_virus	9.3e-39	24.8
2095941:2095956	attR	NA	NA	NA	NA
WP_003641346.1\|2096623_2097202_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003644130.1\|2097655_2099029_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	4.2e-124	50.0
WP_003641344.1\|2099362_2100385_-	diacylglycerol kinase	A0A1V0SBJ0	Catovirus	2.6e-17	26.5
WP_003641343.1\|2100489_2101914_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_003644129.1\|2101913_2103377_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_003641341.1\|2103376_2103697_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA

DBSCAN-SWA_5

2257426 : 2318191

Lactobacillus_phage(40.0%)

transposase,integrase,tRNA,protease

attL 2281089:2281108|attR 2284242:2284261

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003645743.1\|2257426_2258722_+\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	4.2e-57	31.2
WP_003644060.1\|2258892_2259522_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_021357441.1\|2259630_2260104_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_045352123.1\|2260379_2262269_-	FAD-binding protein	A0A2P0ZL82	Lactobacillus_phage	4.0e-16	26.2
WP_021357439.1\|2262455_2263382_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	5.5e-19	25.8
WP_021357438.1\|2263452_2264004_-	helix-turn-helix domain-containing protein	X2CXD8	Lactobacillus_phage	4.9e-07	48.4
WP_053267327.1\|2264103_2264838_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003644055.1\|2264906_2265401_-	kinase	NA	NA	NA	NA
WP_003645748.1\|2265488_2265608_-	putative metal homeostasis protein	NA	NA	NA	NA
WP_053267328.1\|2265816_2269590_+	MucBP domain-containing protein	NA	NA	NA	NA
WP_053267329.1\|2269704_2270235_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_053267330.1\|2271106_2271751_-	hypothetical protein	NA	NA	NA	NA
WP_072540428.1\|2272089_2272638_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	9.1e-30	40.3
WP_077727009.1\|2272634_2272844_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_047672916.1\|2274218_2276753_-	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	1.2e-68	27.5
WP_053267332.1\|2276875_2279392_-	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_114894106.1\|2279501_2281688_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
2281089:2281108	attL	NA	NA	NA	NA
WP_053267334.1\|2281687_2282776_+\|integrase	site-specific integrase	Q9AZR0	Lactococcus_phage	1.5e-60	38.5
WP_053267335.1\|2282833_2286385_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
2284242:2284261	attR	NA	NA	NA	NA
WP_053267336.1\|2286409_2290060_-	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_021357610.1\|2290094_2290676_-	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_053267337.1\|2290678_2291272_-	DUF1819 family protein	NA	NA	NA	NA
WP_158099649.1\|2291474_2293064_-	alpha-rhamnosidase	NA	NA	NA	NA
WP_015825253.1\|2293169_2293502_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_053267338.1\|2293863_2294874_-	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_053267339.1\|2295005_2295806_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_003641176.1\|2296009_2296450_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_003644046.1\|2296510_2296933_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_003641174.1\|2296947_2297130_-	hypothetical protein	NA	NA	NA	NA
WP_053267340.1\|2297142_2297688_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
WP_003641172.1\|2297699_2297954_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_003641171.1\|2298194_2300042_-	acetyltransferase	A0A1R3Y5Q6	Salmonella_virus	4.5e-20	23.3
WP_011101208.1\|2300031_2300415_-	hypothetical protein	NA	NA	NA	NA
WP_013355305.1\|2301009_2301366_-	hypothetical protein	NA	NA	NA	NA
WP_033098992.1\|2301432_2302500_-	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_033098993.1\|2302499_2303090_-	hypothetical protein	NA	NA	NA	NA
WP_053267341.1\|2303124_2305836_-	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
WP_021355861.1\|2305998_2306313_+	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	3.3e-08	36.0
WP_053267342.1\|2306444_2308949_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_053267343.1\|2309445_2310129_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_053267344.1\|2310676_2311045_+	helix-turn-helix transcriptional regulator	E9LUL4	Lactobacillus_phage	6.6e-16	40.9
WP_021730181.1\|2311277_2311646_+	hypothetical protein	NA	NA	NA	NA
WP_053267345.1\|2312213_2312483_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_087509231.1\|2312489_2312651_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_053267346.1\|2312758_2313625_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_053267347.1\|2313621_2314215_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_053267348.1\|2314470_2317038_-	AAA family ATPase	NA	NA	NA	NA
WP_157697323.1\|2317653_2317827_+\|transposase	transposase	NA	NA	NA	NA
WP_053267349.1\|2317819_2318191_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2515881 : 2524505

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003643943.1\|2515881_2516877_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	5.9e-51	38.2
WP_003640969.1\|2517015_2517801_-	acyl-ACP thioesterase	NA	NA	NA	NA
WP_003643942.1\|2517804_2518701_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	9.9e-82	55.7
WP_003640967.1\|2518799_2519147_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	2.4e-12	33.3
WP_003640966.1\|2519171_2520191_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.1e-32	33.5
WP_053267369.1\|2520222_2520537_-	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_003644908.1\|2520533_2521199_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.4e-53	52.7
WP_003640957.1\|2521596_2521848_-	YaaL family protein	NA	NA	NA	NA
WP_003637790.1\|2521862_2522462_-	recombination protein RecR	NA	NA	NA	NA
WP_003640956.1\|2522477_2522786_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_003644909.1\|2522807_2524505_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.9e-55	37.0

DBSCAN-SWA_7

2542954 : 2643488

103

Lactobacillus_phage(80.65%)

integrase,transposase,protease,portal,capsid,tail,terminase,tRNA,lysis

attL 2572537:2572552|attR 2610749:2610764

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003644975.1\|2542954_2544367_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.1e-45	30.0
WP_003640932.1\|2544644_2546135_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_003640931.1\|2546460_2547636_-	PIN/TRAM domain-containing protein	NA	NA	NA	NA
WP_053267373.1\|2547651_2549031_-	DNA repair protein RadA	NA	NA	NA	NA
WP_003640928.1\|2550091_2550628_-	dUTP diphosphatase	J9PV85	Bacillus_phage	2.4e-35	45.8
WP_053267374.1\|2550766_2551063_+	N-acetyltransferase	NA	NA	NA	NA
WP_053267375.1\|2551071_2551755_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_053267376.1\|2551830_2553162_+	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	3.2e-68	33.3
WP_053267377.1\|2553351_2554044_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_021356512.1\|2554462_2555140_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_003643926.1\|2555289_2556315_-	EamA family transporter	NA	NA	NA	NA
WP_003643925.1\|2556747_2557710_-	AEC family transporter	NA	NA	NA	NA
WP_016526944.1\|2558019_2559213_+	LCP family protein	NA	NA	NA	NA
WP_016526943.1\|2559280_2560054_-	hypothetical protein	NA	NA	NA	NA
WP_053267378.1\|2560046_2560850_-	acetyl-CoA carboxyl transferase	NA	NA	NA	NA
WP_003644984.1\|2560846_2562169_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_003640916.1\|2562171_2562573_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_003640915.1\|2562583_2563555_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_003640914.1\|2563718_2564237_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_003640913.1\|2564233_2564653_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_053267379.1\|2564723_2567573_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA
WP_003640911.1\|2567877_2568264_-	DUF956 family protein	NA	NA	NA	NA
WP_003644988.1\|2568392_2569325_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_003640909.1\|2569343_2570150_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
WP_003640908.1\|2570185_2571160_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_046038320.1\|2571450_2572305_-	C39 family peptidase	NA	NA	NA	NA
2572537:2572552	attL	NA	NA	NA	NA
WP_053267380.1\|2572730_2573663_-	lysin	A0A2P0ZLG2	Lactobacillus_phage	3.4e-178	96.8
WP_053267381.1\|2573662_2573947_-\|lysis	lysis protein	A0A2P0ZLE8	Lactobacillus_phage	2.0e-41	97.9
WP_053267382.1\|2573946_2574141_-	hypothetical protein	A0A2P0ZLG4	Lactobacillus_phage	6.9e-25	100.0
WP_053267383.1\|2574143_2574527_-	hypothetical protein	A0A2P0ZLF7	Lactobacillus_phage	3.6e-65	94.5
WP_053267384.1\|2574531_2574978_-	hypothetical protein	A0A2P0ZLE9	Lactobacillus_phage	1.5e-46	69.7
WP_053267385.1\|2574980_2575430_-	DUF1617 family protein	A0A2P0ZLE0	Lactobacillus_phage	4.0e-23	41.8
WP_053267386.1\|2575436_2579159_-	hypothetical protein	A0A2P0ZLE1	Lactobacillus_phage	0.0e+00	67.1
WP_053267387.1\|2579178_2580000_-\|tail	phage tail family protein	A0A2P0ZLE2	Lactobacillus_phage	2.9e-149	95.6
WP_053267388.1\|2580003_2584551_-\|tail	phage tail tape measure protein	A0A2P0ZLF1	Lactobacillus_phage	0.0e+00	80.8
WP_003643912.1\|2584569_2584791_-	hypothetical protein	A0A2P0ZLD9	Lactobacillus_phage	3.9e-32	98.6
WP_003643911.1\|2584814_2585129_-	hypothetical protein	A0A2P0ZLF3	Lactobacillus_phage	4.2e-48	90.4
WP_053267389.1\|2585221_2585833_-\|tail	phage tail protein	A0A2P0ZLF5	Lactobacillus_phage	4.3e-105	96.6
WP_053267390.1\|2585847_2586270_-	hypothetical protein	A0A2P0ZLE4	Lactobacillus_phage	9.7e-72	97.9
WP_053267391.1\|2586266_2586674_-	hypothetical protein	A0A2P0ZLD7	Lactobacillus_phage	3.3e-69	97.8
WP_053267392.1\|2586670_2587060_-	hypothetical protein	A0A2P0ZLD1	Lactobacillus_phage	1.9e-61	86.8
WP_053267393.1\|2587040_2587346_-	hypothetical protein	A0A2P0ZLD5	Lactobacillus_phage	1.4e-48	97.0
WP_003643905.1\|2587484_2588663_-\|capsid	phage major capsid protein	A0A2P0ZLD6	Lactobacillus_phage	1.6e-217	98.7
WP_053267394.1\|2588683_2589436_-\|protease	Clp protease ClpP	A0A2P0ZLE3	Lactobacillus_phage	2.3e-132	98.4
WP_053267395.1\|2589422_2590565_-\|portal	phage portal protein	A0A2P0ZLC9	Lactobacillus_phage	2.0e-212	96.8
WP_053267396.1\|2590583_2592266_-\|terminase	terminase large subunit	A0A2P0ZLE5	Lactobacillus_phage	0.0e+00	98.8
WP_053267418.1\|2592262_2592550_-\|terminase	P27 family phage terminase small subunit	A0A2P0ZLC8	Lactobacillus_phage	5.6e-39	87.4
WP_053267397.1\|2592658_2592901_-	hypothetical protein	A0A2P0ZLD2	Lactobacillus_phage	2.9e-36	91.2
WP_053267398.1\|2592918_2593161_-	hypothetical protein	A0A2P0ZLD3	Lactobacillus_phage	6.6e-33	83.8
WP_080371116.1\|2593160_2593499_-	HNH endonuclease	A0A2P0ZLC6	Lactobacillus_phage	2.3e-60	94.6
WP_003643898.1\|2593482_2593698_-	hypothetical protein	A0A2P0ZLC2	Lactobacillus_phage	2.2e-27	81.4
WP_053267399.1\|2593766_2594474_-	hypothetical protein	NA	NA	NA	NA
WP_053267400.1\|2594652_2595084_-	hypothetical protein	A0A2P0ZLC0	Lactobacillus_phage	3.9e-68	95.6
WP_053267401.1\|2595095_2595404_-	hypothetical protein	A0A2P0ZLD0	Lactobacillus_phage	1.6e-47	93.1
WP_053267402.1\|2595536_2596046_-	DUF1642 domain-containing protein	A0A2K9VC25	Lactobacillus_phage	5.7e-42	56.3
WP_179297124.1\|2596060_2596219_-	hypothetical protein	O03920	Lactobacillus_phage	6.4e-13	71.2
WP_053267403.1\|2596247_2596907_-	SAM-dependent DNA methyltransferase	D6PSV0	Lactobacillus_phage	7.7e-100	94.6
WP_101843607.1\|2596948_2597098_-	hypothetical protein	A0A2P0ZLB5	Lactobacillus_phage	1.0e-12	89.1
WP_053267404.1\|2597117_2597450_-	VRR-NUC domain-containing protein	A0A2P0ZLB6	Lactobacillus_phage	4.2e-54	90.0
WP_053267405.1\|2597704_2598970_-	helicase	A0A2P0ZLC4	Lactobacillus_phage	5.4e-227	93.6
WP_053267406.1\|2598966_2599761_-	bifunctional DNA primase/polymerase	A0A2P0ZLB0	Lactobacillus_phage	1.6e-139	93.9
WP_053267407.1\|2599831_2600464_-	hypothetical protein	A0A2P0ZLB9	Lactobacillus_phage	3.5e-102	98.9
WP_053267408.1\|2600466_2601183_-	AAA family ATPase	A0A2P0ZLB2	Lactobacillus_phage	4.6e-114	99.1
WP_053267409.1\|2601182_2601692_-	HNH endonuclease	A0A0S2MXX9	Enterococcus_phage	1.5e-13	35.3
WP_053267419.1\|2601688_2602948_-	DEAD/DEAH box helicase family protein	A0A2P0ZLA5	Lactobacillus_phage	3.1e-230	96.2
WP_053267410.1\|2603099_2603579_-	siphovirus Gp157 family protein	A0A2P0ZLB3	Lactobacillus_phage	9.3e-79	93.7
WP_021730257.1\|2603681_2603852_-	hypothetical protein	A0A2P0ZLA6	Lactobacillus_phage	5.5e-26	98.2
WP_015825166.1\|2603823_2604009_-	hypothetical protein	A0A2P0ZLA3	Lactobacillus_phage	2.4e-27	91.8
WP_179297123.1\|2604001_2604178_-	hypothetical protein	A0A2P0ZLB1	Lactobacillus_phage	7.7e-23	86.2
WP_053267411.1\|2604170_2604614_-	hypothetical protein	A0A2P0ZLA2	Lactobacillus_phage	1.7e-71	91.2
WP_021357721.1\|2604752_2605025_-	hypothetical protein	A0A2P0ZLA9	Lactobacillus_phage	1.2e-43	100.0
WP_053267412.1\|2605024_2605228_-	hypothetical protein	A0A2P0ZLA4	Lactobacillus_phage	5.7e-30	98.5
WP_053267413.1\|2605224_2606034_-	ORF6N domain-containing protein	Q9T1J2	Lactobacillus_phage	6.0e-46	60.4
WP_050339955.1\|2606046_2606229_-	helix-turn-helix transcriptional regulator	Q5YAA3	Bacillus_phage	5.2e-14	60.0
WP_053267414.1\|2606499_2606880_+	helix-turn-helix transcriptional regulator	A0A2P0ZLA1	Lactobacillus_phage	1.0e-40	64.5
WP_053267415.1\|2606889_2607321_+	hypothetical protein	A0A2P0ZLA0	Lactobacillus_phage	1.7e-79	99.3
WP_053267416.1\|2607413_2608037_+	hypothetical protein	NA	NA	NA	NA
WP_053267417.1\|2608271_2608730_+	hypothetical protein	NA	NA	NA	NA
WP_053266960.1\|2608906_2609269_+	hypothetical protein	E9LUS2	Lactobacillus_phage	1.0e-53	85.8
WP_053266959.1\|2609440_2610598_+\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	2.3e-216	97.9
WP_053267002.1\|2610888_2611764_-	homoserine kinase	NA	NA	NA	NA
2610749:2610764	attR	NA	NA	NA	NA
WP_003640905.1\|2611772_2613059_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_003644992.1\|2613124_2613571_-	SprT family protein	NA	NA	NA	NA
WP_033615666.1\|2613570_2615742_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_053267003.1\|2616035_2616470_-	hypothetical protein	NA	NA	NA	NA
WP_003644995.1\|2616524_2619179_-	cation-translocating P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	8.8e-70	28.9
WP_003640900.1\|2619634_2620462_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	6.5e-72	54.0
WP_053267004.1\|2620461_2621940_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.3e-106	44.1
WP_003644996.1\|2622096_2622834_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA
WP_003640897.1\|2623003_2623705_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003644997.1\|2623728_2624865_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_053267005.1\|2624943_2625735_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.7e-29	35.7
WP_003640894.1\|2626095_2626917_+	nicotinamide mononucleotide transporter	A0A2K9VCL6	Lactobacillus_phage	3.3e-52	42.2
WP_003640893.1\|2627109_2628216_+	anion permease	NA	NA	NA	NA
WP_053267006.1\|2628374_2629217_-	metallophosphoesterase	NA	NA	NA	NA
WP_003640891.1\|2629251_2629587_-	cupin domain-containing protein	NA	NA	NA	NA
WP_053267007.1\|2629617_2630142_-	hypothetical protein	NA	NA	NA	NA
WP_003640889.1\|2630315_2630774_-	hypothetical protein	NA	NA	NA	NA
WP_088467707.1\|2630802_2631578_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	9.3e-28	55.0
WP_015639982.1\|2632188_2633031_-	metallophosphoesterase	NA	NA	NA	NA
WP_003643855.1\|2633085_2634558_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.1e-68	34.3
WP_003642090.1\|2640877_2642377_-\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.6e-89	37.5
WP_053267179.1\|2642480_2643488_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage