CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017991	Enterobacter cloacae complex sp. ECNIH7 plasmid pENT-1ac, complete sequence	0 crisprs	WYL,TnsE_C	0	0	2	0
NZ_CP017990	Enterobacter cloacae complex sp. ECNIH7 chromosome, complete genome	4 crisprs	WYL,DEDDh,csa3,DinG,cas3,RT	1	2	13	1
NZ_CP017993	Enterobacter cloacae complex sp. ECNIH7 plasmid pKPC-98f, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP017992	Enterobacter cloacae complex sp. ECNIH7 plasmid pENT-2c5, complete sequence	0 crisprs	NA	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

24663 : 76976

uncultured_Caudovirales_phage(21.43%)

transposase,integrase

attL 44595:44609|attR 79092:79106

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001567368.1\|24663_26067_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_001567369.1\|26095_26728_-	hypothetical protein	NA	NA	NA	NA
WP_016809498.1\|29709_31188_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.1e-197	74.0
WP_016809496.1\|31612_32236_+	recombinase family protein	NA	NA	NA	NA
WP_016809495.1\|32290_35275_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.4e-302	54.4
WP_048270272.1\|36942_38340_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_048270271.1\|38339_40721_-	SAM-dependent DNA methyltransferase	A0A2H4PQP4	Staphylococcus_phage	2.3e-29	32.1
WP_015632415.1\|40732_42463_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_015632416.1\|42477_43386_-	WYL domain-containing protein	NA	NA	NA	NA
WP_157833877.1\|43549_43873_-	hypothetical protein	NA	NA	NA	NA
44595:44609	attL	NA	NA	NA	NA
WP_086538487.1\|45063_45957_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_071594637.1\|45937_46012_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_001568069.1\|46228_46498_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_003100847.1\|46680_47238_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_003100853.1\|47231_47603_-	hypothetical protein	NA	NA	NA	NA
WP_003100856.1\|47599_48100_-	hypothetical protein	NA	NA	NA	NA
WP_003100858.1\|48096_48423_-	hypothetical protein	NA	NA	NA	NA
WP_000215515.1\|48677_49034_-	cupin domain-containing protein	NA	NA	NA	NA
WP_001293886.1\|49023_49425_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_001247892.1\|49421_49712_-	nucleotidyltransferase	NA	NA	NA	NA
WP_032490487.1\|49912_50347_-	mercury resistance transcriptional regulator MerR	NA	NA	NA	NA
WP_001294663.1\|50418_50769_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_011405607.1\|50782_51058_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_011405608.1\|51245_52955_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.3e-34	27.1
WP_011405609.1\|52990_53644_+	phenylmercury resistance protein MerG	NA	NA	NA	NA
WP_058672289.1\|53724_54363_+	organomercurial lyase MerB	NA	NA	NA	NA
WP_021443905.1\|54359_54707_+	mercuric resistance transcriptional repressor protein MerD	NA	NA	NA	NA
WP_072201471.1\|54797_55010_-	hypothetical protein	NA	NA	NA	NA
WP_010981353.1\|55340_55775_-	mercury resistance transcriptional regulator MerR	NA	NA	NA	NA
WP_077269372.1\|55704_56058_+	hypothetical protein	NA	NA	NA	NA
WP_000761850.1\|56072_56711_+	organomercurial lyase MerB	NA	NA	NA	NA
WP_000995361.1\|56822_57188_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_005413392.1\|57184_57421_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_010981356.1\|57436_57757_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_010981357.1\|57795_58410_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.1e-37	51.0
WP_011405615.1\|58470_59688_-	TniQ family protein	NA	NA	NA	NA
WP_000393453.1\|59684_60593_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_010791757.1\|60595_62278_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	3.7e-05	24.7
WP_088545060.1\|62480_65450_+\|transposase	Tn3-like element TnShfr1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_011787801.1\|66508_67999_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	8.6e-224	82.2
WP_011787802.1\|68033_68888_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.3e-67	48.6
WP_011787803.1\|68978_69311_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_011787804.1\|69428_70049_-	recombinase family protein	E5FFF9	Burkholderia_phage	1.1e-26	37.1
WP_011787805.1\|70218_70479_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011918375.1\|70478_70790_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011787830.1\|70813_73894_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.2e-51	30.6
WP_088545061.1\|74686_75676_+\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	4.8e-05	31.6
WP_085949497.1\|75829_76976_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-147	92.6
79092:79106	attR	NA	NA	NA	NA

DBSCAN-SWA_2

132032 : 139839

Macacine_betaherpesvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088545113.1\|132032_133004_-	StbA family protein	A0A222YXF2	Escherichia_phage	6.9e-73	47.1
WP_088545114.1\|133234_133666_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	5.1e-28	51.6
WP_088545115.1\|133665_134937_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	9.8e-152	63.7
WP_088545116.1\|135941_136916_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	1.1e-134	76.2
WP_088545117.1\|136915_138082_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	4.2e-218	93.8
WP_088545125.1\|138828_139839_+	replication initiation protein	J9Q7H0	Salmonella_phage	1.7e-85	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017990

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017990_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017990_1

324252-324388

Orphan

Consensus_repeat	Method
AGGTAAAAGCAAAAAGGCAACGCAAGTTGCCTTTTTTAATGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017990_1

>merge|NZ_CP017990|1|324252-324388|CRISPRCasFinder
AGGTAAAAGCAAAAAGGCAACGCAAGTTGCCTTTTTTAATGTTTTCTCCCTCTCCCGTGGGAGAGGGTCGGGGTGAGGGCACCAGACCGCACGAGGTAAAAGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGTGTTT

>NZ_CP017990|1|1|324252-324388|CRISPRCasFinder
AGGTAAAAGCAAAAAGGCAACGCAAGTTGCCTTTTTTAATGTTT	TCTCCCTCTCCCGTGGGAGAGGGTCGGGGTGAGGGCACCAGACCGCACG
AGGTAAAAGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGTGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017990.1\|WP_063408489.1\|319417_320527_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivK	unknown	unknown	gnl\|CDD\|237959
NZ_CP017990.1\|WP_023310024.1\|322770_323538_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	unknown	unknown	gnl\|CDD\|183080
NZ_CP017990.1\|WP_059445320.1\|333770_334466_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP017990.1\|WP_023310021.1\|318603_318993_-\|aspartate-1-decarboxylase-autocleavage-activator-PanM	unknown	unknown	gnl\|CDD\|380212
NZ_CP017990.1\|WP_063408491.1\|313648_314704_+\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|182910
NZ_CP017990.1\|WP_063408485.1\|326035_326923_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	unknown	unknown	gnl\|CDD\|182550
NZ_CP017990.1\|WP_047743095.1\|321496_322774_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
NZ_CP017990.1\|WP_021242735.1\|317412_318513_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivJ	unknown	unknown	gnl\|CDD\|237959
NZ_CP017990.1\|WP_063408483.1\|327766_328837_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP017990.1\|WP_063408490.1\|315949_317215_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|180690
NZ_CP017990.1\|WP_014833581.1\|331864_332353_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|182263
NZ_CP017990.1\|WP_063408482.1\|329563_329941_-\|DUF2756-family-protein	unknown	unknown	gnl\|CDD\|182398
NZ_CP017990.1\|WP_063408481.1\|332609_333647_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182305
NZ_CP017990.1\|WP_176600584.1\|330064_331810_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|181992
NZ_CP017990.1\|WP_059445326.1\|324599_325916_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	unknown	unknown	gnl\|CDD\|182876
NZ_CP017990.1\|WP_023310018.1\|314955_315813_+\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP017990.1\|WP_023310016.1\|312990_313662_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|182829
NZ_CP017990.1\|WP_045888354.1\|328833_329580_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236524
NZ_CP017990.1\|WP_063408484.1\|326919_327765_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	unknown	unknown	gnl\|CDD\|182875
NZ_CP017990.1\|WP_008500099.1\|320573_321500_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	unknown	unknown	gnl\|CDD\|182689

Protein	Function_ID	Function_description	E-value
NZ_CP017990.1\|WP_063408489.1\|319417_320527_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivK	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
NZ_CP017990.1\|WP_023310024.1\|322770_323538_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	0
NZ_CP017990.1\|WP_059445320.1\|333770_334466_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.08739e-83
NZ_CP017990.1\|WP_023310021.1\|318603_318993_-\|aspartate-1-decarboxylase-autocleavage-activator-PanM	gnl\|CDD\|380212	NF033213, matur_PanM, aspartate 1-decarboxylase autocleavage activator PanM. Members of this family, called PanM (or PanZ), although related to the GNAT family N-acetyltransferases, have a different function. Then enzyme PanD, aspartate 1-decarboxylase, has an active site modified Ser residue, created by cleavage of a precursor form. PanM promotes the maturation of the CoA biosynthesis enzyme PanD, but also inhibits its activity in the presence of CoA. Figure 6 in PMID:26276430 identifies residues considered critical to interaction with PanD; seed alignment sequences and cutoff scores were chosen to separate proposed PanM from functionally distinct relatives.	2.35994e-80
NZ_CP017990.1\|WP_063408491.1\|313648_314704_+\|cell-division-protein-FtsX	gnl\|CDD\|182910	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional.	0
NZ_CP017990.1\|WP_063408485.1\|326035_326923_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	gnl\|CDD\|182550	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA.	0
NZ_CP017990.1\|WP_047743095.1\|321496_322774_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	0
NZ_CP017990.1\|WP_021242735.1\|317412_318513_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivJ	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
NZ_CP017990.1\|WP_063408483.1\|327766_328837_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP017990.1\|WP_063408490.1\|315949_317215_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|180690	PRK06777, PRK06777, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP017990.1\|WP_014833581.1\|331864_332353_-\|N-acetyltransferase	gnl\|CDD\|182263	PRK10140, PRK10140, N-acetyltransferase.	9.44354e-121
NZ_CP017990.1\|WP_063408482.1\|329563_329941_-\|DUF2756-family-protein	gnl\|CDD\|182398	PRK10350, PRK10350, DUF2756 family protein.	4.09321e-22
NZ_CP017990.1\|WP_063408481.1\|332609_333647_+\|oxidoreductase	gnl\|CDD\|182305	PRK10206, PRK10206, putative oxidoreductase; Provisional.	0
NZ_CP017990.1\|WP_176600584.1\|330064_331810_+\|gamma-glutamyltransferase	gnl\|CDD\|181992	PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed.	0
NZ_CP017990.1\|WP_059445326.1\|324599_325916_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	0
NZ_CP017990.1\|WP_023310018.1\|314955_315813_+\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
NZ_CP017990.1\|WP_023310016.1\|312990_313662_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|182829	PRK10908, PRK10908, cell division ATP-binding protein FtsE.	3.10936e-161
NZ_CP017990.1\|WP_045888354.1\|328833_329580_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236524	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional.	5.3961e-171
NZ_CP017990.1\|WP_063408484.1\|326919_327765_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	gnl\|CDD\|182875	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE.	0
NZ_CP017990.1\|WP_008500099.1\|320573_321500_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	0

>NZ_CP017990.1|WP_023310024.1|322770_323538_+|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG
MSQPLLSVNGLMMRFGGLLAVNNVNLDLHKKEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAQDEALDRAATWLDRIGLLQHANRQASNLAYGDQRRLEIVRCMVTQPEILMLDEPAAGLNPKETKELDELIAELRDSHDTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPDVIRAYLGEA
>NZ_CP017990.1|WP_047743095.1|321496_322774_+|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MKPMHFAMALLSAAMFFVLASVFMGVQLELNGTKLVVDTAADIRWQWVFIGTAVVFLFQLLRPLFQKTLKNVSGPKFVLPAIDGSTVKQKLFLVALLVAAVAWPFVVSRGTVDIATLTMIYVILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVSAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEVTGGPNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFGVKYDPSDRVIWLYMVALLLVVITLFVINRLLRMPLGRAWEALREDEIACRSLGLNPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGQAKGEQA
>NZ_CP017990.1|WP_008500099.1|320573_321500_+|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH
MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDSSWLLVAAGFVGAIVIASAYGWSIERVAYRPVRSSKRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWIVGASENFAASITTMQLVIWVVTFIAMLALTLFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGVAEALSSAYLSTEYKDVVSFALLILVLLVMPTGILGRPEVEKV
>NZ_CP017990.1|WP_063408489.1|319417_320527_+|high-affinity-branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivK
MKRNAKTFIAGMVALSISHAAMADDIKVAVVGAMSGPVAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIQYVIGHLCSSSTQPASDIYEDEGILMITPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKKGGANIVFFDGITAGEKDFSALIARLQKENIDFVYYGGYYPEMGQMLRQARATGLKTQFMGPEGVGNASLSNIAGDSAEGMLVTMPKRYDQDPANKAIVDALKAQKKDPSGPYVWITYAAVQSLATALDRSGSKEPLDLVKDLKAHGANTVIGPLNWDEKGDLKGFEFGVFKWHADGSSSAAK
>NZ_CP017990.1|WP_023310021.1|318603_318993_-|aspartate-1-decarboxylase-autocleavage-activator-PanM
MKLTIVRLVTFSDQDHIDLGKIWPEYSPSSLRVDETHRIYAARFNERLLAAVRVTLSGTEGALDSLRVRDVTRRRGVGQYLIEEVIRENPSVTSWWMADVGVEDRGVMAAFMQALGFTAQESGWEKRQG
>NZ_CP017990.1|WP_021242735.1|317412_318513_+|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivJ
MNMKGKALLAGCIALAFSTMAQADIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGEKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYKLTLRTTGLDSDQGPTAAKYIVEKVKPKRIAIVHDKQQYGEGLARSVQDNLKKANADVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSADPAEIATWLKANTVETVMGPLSWDTKGDLKGFEFGVFDWHANGTATDAK
>NZ_CP017990.1|WP_063408490.1|315949_317215_+|4-aminobutyrate--2-oxoglutarate-transaminase
MKNNELNDRRLQATPRGIGVMCSFYADKAENATVWDVEGNEYIDFAAGIAVLNTGHRHPKVISAIEKQLHAFTHTAYQIVPYEGYVALAERINQRVPVDGPAKTAFFSTGAEAVENAVKIARAYTRRPGLITFGGAFHGRTFMTMALTGKVAPYKIGFGPFPGSVYHAQYPNELHGVSTAEALKSLERIFKADIAPDQVAAIILEPVQGEGGFNIAPADFMQALRALCDTHGILLIADEVQSGFARTGKLFSMEHHCVKPDLITMAKSLAGGMPLSAVSGRAEVMDAPAPGGLGGTYAGNPLAIAAAHAVLDVIDEEDLCTRSAHLGHHLVEVLNKAKERCPYIADIRAQGSMVAVEFNDPQTGQPSPEFTRQVQDRALQEGLLLLSCGVYGNVIRFLYPLTIPEAQFRKALDIISASLTR
>NZ_CP017990.1|WP_023310018.1|314955_315813_+|RNA-polymerase-sigma-factor-RpoH
MTKEMQTLALAPVGNLESYIRAANTWPMLTAEEEKELAEKLHYQGDLEAAKKLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKAKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQDMTFDMSSDDDASDSQPMAPVLYLQDKTSNFADGIEEDNWEDQAANKLTHAMEGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA
>NZ_CP017990.1|WP_063408491.1|313648_314704_+|cell-division-protein-FtsX
MNKRDAINQIRQFGNRFDRFRKPQGGGDGNRNASKRQKAAPKPASRKTNVFNEQVRYAFHGALQDLKSKPLATFLTVMVIAISLTLPSVCYMVYKNVNQAASQYYPSPQITVYMDKALDDNAAAQVVGQIQAEQGVEKVNYLSREDALGEFRNWSGFGGALDMLEENPLPAVAVVIPKLDFQGTDSLNTLRDRITRIKGIDEVRMDDSWFARLSALTGLVGRVAAMIGVLMVAAVFLVIGNSVRLSIFARRDTINVQKLIGATDGFILRPFLYGGALLGFSGAFLSLILSEILVMRLSSAVTEVAQVFGTKFDISGLGFDECLLLLLVCSMIGWVAAWLATVQHLRHFTPD
>NZ_CP017990.1|WP_023310016.1|312990_313662_+|cell-division-ATP-binding-protein-FtsE
MIRFEHVSKAYLGGRQALQGVTFHLQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIFFGGHEISRLKNREVPFLRRQIGMIFQDHHLLMDRTVFDNVAIPLIIAGASYDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGHGEQA
>NZ_CP017990.1|WP_059445326.1|324599_325916_+|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB
MTSLRHTALGLALGLAFATNAMAVTTIPFWHSMEGELGKEVDSLAQRFNDAHPDYKIVPVYKGNYEQSLSAGIAAFRTGNAPALLQVYEVGTATMMASKAIKPVYEVFKEAGINFDESQFVPTVAGYYTDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLAEYTAKLKAAGMKCGYASGWQGWIQIENFSAWHGLPVATKNNGFDGTDAVLEFNKPEQVKHIALLADLNKKGDFSYFGRKDESTEKFYNGDCAITTASSGSLADIRHYAKFNYGVGMMPYDADVKGAPQNAIIGGASLWVMQGKDKGTYKGVAEFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYSKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTIVDEELESVWTGKKTPQQALDSAVERGNQLLRRFEQSTKS
>NZ_CP017990.1|WP_063408485.1|326035_326923_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA
MSSSRPVFRSRWLPYLLVAPQLVITVIFFIWPAGEALWYSVQSVDPFGLSSQFVGLDNFTALFHDSYYLGSFWTTMKFSALVTVSGLVASLFFAALVDYVVRGSRIYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAELGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFRLSLPLIAPVSFFLLVVNLVYAFFDTFPVIDAATAGGPVQATTTLIYKIYREGFAGLDLSASAAQSVVLMFLVIILTVVQFRYVESKVRYQ
>NZ_CP017990.1|WP_063408484.1|326919_327765_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE
MIENRRGLTIFSHTMLILGIIVILFPLYVAFVAATLDTKAVFDTPMTLIPGGHLFENMKTIWTRGVGANSAPFWLMMLNSFIMAFGITVGKITVSMLSAFAIVWFRFPLRNFFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAGIKGMIATGEGTTLWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK
>NZ_CP017990.1|WP_063408483.1|327766_328837_+|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC
MAGLKLQAVTKSWDGKTQVIQPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTSGDIWIDRQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGIGKGHIDERVKEAARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNKGVAEQIGTPVEVYEKPATRFVASFIGSPAMNLLEGRISNAGTHFELESGMALPINWYYRGHAGRKMTLGIRPEHIGLTSQADGGVPLVMDTLEMLGADNLAHGRWGEQKMVVRLAHQERPKAGSTLWLHLPENHLHLFDGETGQRV
>NZ_CP017990.1|WP_045888354.1|328833_329580_+|glycerophosphodiester-phosphodiesterase
MSNWPYPHVVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELPWRDLLKVDAGSWYSGEFKGEPLPLLAEVADRCRQHGMMANIEIKPTTGTGPLTGKVIALAARELWEGMTAPLLSSFEIDALEAAQAAVPELPRGLLLDEWREDWRELTTRLACVSIHLNHRLLDEARVKMLKDAGLHILVYTVNKPQRAAELLRWGVDSICTDAIDLIGPDFSSAD
>NZ_CP017990.1|WP_063408482.1|329563_329941_-|DUF2756-family-protein
MKRLMILAALIPFAALAQPLNTMNNPNQQGYVIPSQQRMQTEMMSQQQQQKGMLNQQLRTQTQMQQQSLQNQMNANTQRVQQGQMREQPLPNKNGGMLGGMTSSGSGQQHMLPPQSNGSMLNPQN
>NZ_CP017990.1|WP_176600584.1|330064_331810_+|gamma-glutamyltransferase
MMKPTFLRWVAIAALMAGGTFSVAANPPAAPPVSYGVEEDVFHPVRATHGMVASVDALATKVGVDILRQGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMMLRTKDGKTTAIDFREMAPSQASRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALEKYGTMPLNKVVQPAIKLARDGFVVNDALADDLKTYGSEVIPNHENSKAIFWKDGEPLKKGDRLVQKNLAKSLELIAEHGPDAFYKGAIADQIAEEMQKNGGLITKADLAEYKAVEREPISGTYRGYEVFSMPPPSSGGIHIVQILNILENFDMHKFGFGSADAMQVMAEAEKRAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYESNQTTHFSVVDKDGNAVAVTYTLNTTFGTGIVAGTSGILLNNEMDDFSAKPGVPNVYGLVGGDANAVGPKKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDFGMNVAEATNAPRFHHQWLPDELRVEKGFSPDTIKLLEQRGQKVAVKEAMGSTQSIMVGPDGALFGASDPRSVDDLTAGY
>NZ_CP017990.1|WP_014833581.1|331864_332353_-|N-acetyltransferase
MSEIVIRHAEPKDYDAIRQIHAQPEVYHNTLQVPHPSEQMWQERLTDQPGIKQLVACIDGNVTGHLCIAVAQRPRRSHVADFGICVGAQWQNRGVASALMRTMIDMCDNWLRVDRIELTVFVDNEPAIAVYKKHGFEIEGTGKRYALRNGEYVDAYYMARMK
>NZ_CP017990.1|WP_063408481.1|332609_333647_+|oxidoreductase
MTLHCAFIGFGKSTTRYHLPYVLNRKDSWHVTHIYRRRAKPEEQSPQYSHIHFTSDLDEVLNDPQVKLVVVCTHADSHFDYAKRALEAGKNVLVEKPFTPTIAEAKQLFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGGIVEIESHFDYYRPVAETQPGLPQDGSFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGDLKAIVKTSHLVKIDYPKFIAHGTRGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGILEYVNDEGVTVREEMKPEIGDYGRVYDALYETLTTGAPNYVKESDVLTNLEILERAFEQASPATVTLAK
>NZ_CP017990.1|WP_059445320.1|333770_334466_+|pirin-family-protein
MIYLRKANERGHANHGWLDSWHSFSFADYYDPNFMGFSALRVINDDVIDAGQGFGTHPHKDMEILTYVLEGAVEHQDSMGNKEQVPAGEFQIMSAGTGVRHSEYNPSKTEKLHLYQIWIIPEETGITPRYEQRRFDAKQGKQLVLSPDAREGSLKVHQDMELYRWALAKDEQSVHQIAANRRVWIQVVKGEVSINGTKATTADGLAVWDEQAISVHADSESEILLFDLPPV

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Crispr_ID: NZ_CP017990_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017990_2

1093508-1093620

Orphan

Consensus_repeat	Method
CCCTCTCCCTGTGGGAGAGGGCCAGGGTGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017990_2

>merge|NZ_CP017990|2|1093508-1093620|CRISPRCasFinder
CCCTCTCCCTGTGGGAGAGGGCCAGGGTGAGGCAAGGTAAAAGCAAAACAGCAACGAAAGTTGCTGTTTTTGATGTTTGTACCCTCTCCCCGTGGGAGAGGGCCAGGGTGAGG

>NZ_CP017990|2|2|1093508-1093620|CRISPRCasFinder
CCCTCTCCCTGTGGGAGAGGGCCAGGGTGAGG	CAAGGTAAAAGCAAAACAGCAACGAAAGTTGCTGTTTTTGATGTTTGTA
CCCTCTCCCCGTGGGAGAGGGCCAGGGTGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017990.1\|WP_008503270.1\|1091209_1091497_+\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_CP017990.1\|WP_063408750.1\|1101982_1103356_+\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
NZ_CP017990.1\|WP_014168840.1\|1109836_1110439_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|184962
NZ_CP017990.1\|WP_023310545.1\|1100581_1101901_+\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	unknown	unknown	gnl\|CDD\|185331
NZ_CP017990.1\|WP_023310534.1\|1086412_1086733_+\|phosphate-starvation-inducible-protein-PsiF	unknown	unknown	gnl\|CDD\|183165
NZ_CP017990.1\|WP_063408748.1\|1108408_1109794_+\|DUF3999-domain-containing-protein	unknown	unknown	gnl\|CDD\|372507
NZ_CP017990.1\|WP_063408751.1\|1096772_1097978_-\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP017990.1\|WP_059446578.1\|1103890_1105708_+\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
NZ_CP017990.1\|WP_010428006.1\|1088860_1089319_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP017990.1\|WP_008503265.1\|1098165_1098855_+\|phosphate-response-regulator-transcription-factor-PhoB	unknown	unknown	gnl\|CDD\|182277
NZ_CP017990.1\|WP_059446584.1\|1090460_1091138_+\|AroM-family-protein	unknown	unknown	gnl\|CDD\|182491
NZ_CP017990.1\|WP_023310541.1\|1092583_1093489_+\|fructokinase	unknown	unknown	gnl\|CDD\|236565
NZ_CP017990.1\|WP_023310538.1\|1090031_1090223_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182421
NZ_CP017990.1\|WP_023310540.1\|1091545_1092460_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP017990.1\|WP_058841165.1\|1098876_1100172_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
NZ_CP017990.1\|WP_063408749.1\|1105796_1108412_+\|DUF2339-domain-containing-protein	unknown	unknown	gnl\|CDD\|378390
NZ_CP017990.1\|WP_029739752.1\|1089462_1089987_+\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153
NZ_CP017990.1\|WP_023310536.1\|1087953_1088763_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP017990.1\|WP_063408754.1\|1086835_1087939_+\|diguanylate-cyclase-AdrA	unknown	unknown	gnl\|CDD\|182329
NZ_CP017990.1\|WP_088544658.1\|1093644_1096776_-\|exonuclease-subunit-SbcC	unknown	unknown	gnl\|CDD\|182330

Protein	Function_ID	Function_description	E-value
NZ_CP017990.1\|WP_008503270.1\|1091209_1091497_+\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.75461e-64
NZ_CP017990.1\|WP_063408750.1\|1101982_1103356_+\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP017990.1\|WP_014168840.1\|1109836_1110439_-\|peroxiredoxin	gnl\|CDD\|184962	PRK15000, PRK15000, peroxiredoxin C.	5.99401e-148
NZ_CP017990.1\|WP_023310545.1\|1100581_1101901_+\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
NZ_CP017990.1\|WP_023310534.1\|1086412_1086733_+\|phosphate-starvation-inducible-protein-PsiF	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	3.5116e-44
NZ_CP017990.1\|WP_063408748.1\|1108408_1109794_+\|DUF3999-domain-containing-protein	gnl\|CDD\|372507	pfam13163, DUF3999, Protein of unknown function (DUF3999). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 440 and 470 amino acids in length. There is a single completely conserved residue D that may be functionally important.	1.68539e-79
NZ_CP017990.1\|WP_063408751.1\|1096772_1097978_-\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NZ_CP017990.1\|WP_059446578.1\|1103890_1105708_+\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
NZ_CP017990.1\|WP_010428006.1\|1088860_1089319_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.4885e-76
NZ_CP017990.1\|WP_008503265.1\|1098165_1098855_+\|phosphate-response-regulator-transcription-factor-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	4.34777e-162
NZ_CP017990.1\|WP_059446584.1\|1090460_1091138_+\|AroM-family-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	3.06977e-122
NZ_CP017990.1\|WP_023310541.1\|1092583_1093489_+\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
NZ_CP017990.1\|WP_023310538.1\|1090031_1090223_+\|hypothetical-protein	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	1.45594e-30
NZ_CP017990.1\|WP_023310540.1\|1091545_1092460_-\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	0
NZ_CP017990.1\|WP_058841165.1\|1098876_1100172_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NZ_CP017990.1\|WP_063408749.1\|1105796_1108412_+\|DUF2339-domain-containing-protein	gnl\|CDD\|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	4.32521e-68
NZ_CP017990.1\|WP_029739752.1\|1089462_1089987_+\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	1.16237e-105
NZ_CP017990.1\|WP_023310536.1\|1087953_1088763_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	3.29273e-130
NZ_CP017990.1\|WP_063408754.1\|1086835_1087939_+\|diguanylate-cyclase-AdrA	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	0
NZ_CP017990.1\|WP_088544658.1\|1093644_1096776_-\|exonuclease-subunit-SbcC	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0

>NZ_CP017990.1|WP_023310541.1|1092583_1093489_+|fructokinase
MRIGIDLGGTKTEVIALSEQGEQLFRHRLPTPRDDYHQTIETIASLVEMAEQATGQTGSVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSQRLNREVRLANDANCLAVSEAIDGAAAGAQTVFAVIVGTGCGAGVAFGGRAHIGGNGTAGEWGHNPLPWMDEDELKYRAEVPCYCGKQGCIETFISGTGFATDYHRLSGQPLKGNEIMRLVEEQDPVAELALSRYEMRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYATVPNLVKQWVFGGECETPIRKAVHGDSSGVRGAAWLWPE
>NZ_CP017990.1|WP_023310540.1|1091545_1092460_-|recombination-associated-protein-RdgC
MLWFKNLMVYRLSRDVSLRAEEMEKQLAAYTFSPCGSQDMAKTGWVPPMGSQSDALTHASSTGQIIVCARKEEKILPTPVVKQALEAKIFKLEAEQGRKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSIGSLPVVPLALETPIELTLTEWVRSGAAAQGFQILDEAELKALLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRIQFVMCDDGSVKRLKFCDELRDQNEDIDREDYAQRFDADFILMTGELAALIQNLVEGLGGEAQR
>NZ_CP017990.1|WP_008503270.1|1091209_1091497_+|pyrimidine/purine-nucleoside-phosphorylase
MLQSNEYFSGKVKSIGFTSSSTGRASVGVMAEGEYTFGTAEAEEMTVVSGALNVLLPGETEWKVYAAGQVFNVPGHSEFHLQVAEPTSYLCRYLK
>NZ_CP017990.1|WP_059446584.1|1090460_1091138_+|AroM-family-protein
MKATLAILTIGVVPVSEVLPLLTEHVSEQQITHLSLLGKMSREEVMEDYAVEAGEDPLATLLSDGKLAHVSRQKIERALQGVIEVLDNQGYDVILLMSTAPIKGLTARNAILLEPMRIIPPLVASIVDGHQVGVIVPIEELMDNQEAKWHVLEKVPLYALANPFWDSESRLIAAGKELLERGADVLILDCLGFHQHHRDLLQKALDVPVLLSNVLMARLASELLM
>NZ_CP017990.1|WP_023310538.1|1090031_1090223_+|hypothetical-protein
MPTRPPYPREARVVTVEKGQTGHTVTWYQLRADHPKPDSLISEHETEQEALDAKRRYEDPDIT
>NZ_CP017990.1|WP_029739752.1|1089462_1089987_+|shikimate-kinase-AroL
MTQPIFLVGPRGCGKTTVGLELARVCHRQFVDTDHWLQTEAGKTIAEIVEQEGWESFRARETAALKAVTTPSAVIATGGGIVLAECNRHFMREKGIVIYLSAPVSALVGRLEAFPEEGQRPALTSRPLSEEVSEVLAERDALYREAAHHVVDASASPEDVVIQIITALRLACAS
>NZ_CP017990.1|WP_010428006.1|1088860_1089319_+|YaiI/YqxD-family-protein
MAIWVDADACPNVIKEILFRAAERVQMPLTLVANQNIRVPPSRFIRSLRVPAGFDVADNEIVRLCSAEDLVITADIPLAAEVLEKGAAALNPRGERYSPSTIREKLTMRDFMDTMRASGVQTGGPDSLSQRDRQQFAAELDKWLLEVKRRTA
>NZ_CP017990.1|WP_023310536.1|1087953_1088763_-|pyrroline-5-carboxylate-reductase
MDKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAELRDQYGINAAESAQEVAQVADIVFGAVKPNIMIKVLSDITSSLNKETLVVSIAAGVTLDQLARALGHDRKIVRAMPNTPSLVNAGMTSVTPNALVTTEEVADVLNIFRCFGEAEVIAESMIHPVVGVSGSAPAYVFMFLEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGKHPGELKDMVCSPGGTTIEAVRVLEERGFRSAVIEAMAKCMEKSEKLSKS
>NZ_CP017990.1|WP_063408754.1|1086835_1087939_+|diguanylate-cyclase-AdrA
MMNDETYYNKKRIREEWSLTLSQDDPHRAGIQFARRVRLARAVGLAAMFFPVAGMLVTHFLPGGWWLLLVGWSFVWPHFAWQLSCRAASPHQQEIFNLKIDAIIAGLWIGVMGMNALPTAALVMMVGMNMMGSGGCRLFIPGIALTLLSALVTLPLVGKVAVFNPDLVEWGLTLPVLVLYPMLFAWLSHRTAVRLAEHKQRLEMMSTRDGMTGVFNRRHWEMLLRNEFEHCRRDHSTATILLIDIDHFKNINDTWGHDVGDEAIVAITRQLQRSVRSGDAIGRFGGDEFAVIMSQTAAESAIAVMSRLHERLEKLTLPCAPKEALRISVGVAPWGPQFGHYREWLKAADVALYRAKNAGRGRTEVAA
>NZ_CP017990.1|WP_023310534.1|1086412_1086733_+|phosphate-starvation-inducible-protein-PsiF
MKTTLLVTLLSGLFLIASANAEEKTLTPQQQRMTTCNQQATSQSLKGDARKTYMSDCLKNGAAKPAEKSLTPQQQKMRECNAKATEQSLKGDDRSKFMSACLKKKV
>NZ_CP017990.1|WP_088544658.1|1093644_1096776_-|exonuclease-subunit-SbcC
MKILSLRLKNLNSLKGEWKIDFTTEPFASNGLFAITGATGAGKTTLLDAICLALYHETPRLQKVSQAQNDLMTRDTAECLAEVEFEVKGTAYRAFWSQNRARNQPDGNLQAPRVELARCEDGKILADKVTDKLEQTAALTGLDYGRFTRSMLLSQGQFAAFLNAKPSDRAELLEELTGTEIYGQISAMVFEKHKAARSVLEKCEAQAAGVVLLSEEQQQQLQQSLQALTDEEKTLLVQQQSQQKDFQWLTRHDELVLEQQRVTAMQQQAQQALTNAAPELAKLQLALPAAQLRPLWEHQQEQTARLRQTQQRIIEVNTRLQAKTALRARIRHTAQRNHEQLQTELTALAQWLAEHERYRLLGQEIAGWRAQLSQLNRDKTQLDSLAARMSELRNRLAAMPENALTLTADEVSAAMEQQSRSRTLRQRLTSLHARYQPLQKRLRQSGESVLKAQAEQNKLNETLTLRRQQYKEKHQHYLDLKALCEREATIKDLESYRSRLEAGKPCPLCGSSEHPAVAQYQSLELTDNQRRRDDLEKEVAALKEEGLLVLGQVNALTQQIQRETDEAQMLSQEEQALTKEWMEACTSLNIALNIQEDISPWMNEQEQYERQLYQLSQRLTLQNQLNEQEVQERQHQQQLTAALQALENTLLSLSLNVPEDGNEAAWLHAREAEFAQWQEKQTQHGALLERINVLKPLLDTLPETNGEEAEPAIPDGWRDVHDECVSLQSQLTAQQQQEKLEQERLLQSQAQFTAALSASCFADRDAFLAALLDDDAIRRLEQLKQSLESQIQQAAALSGQANQQLHSHLALRPEGLNADAPTLQTQLLQLAQRLRENTTHQGEIRQQLKQDSDNRQHQLALMQQIEEAAREADDWGYLNALIGSSTGDKFRKFAQGLTLDNLVWLANQQLNRLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNATGKTIGVISHVEAMKERIPVQIKVKKINGLGYSRLDKVFAVE
>NZ_CP017990.1|WP_063408751.1|1096772_1097978_-|exonuclease-subunit-SbcD
MRILHTSDWHLGQNFYSKSRAAEHEAFLNWLLETARTHEVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCHLVIVAGNHDSVATLNESRDILAFLNTTVVASAGHAPQILKKRDGTPGAVLCPIPFLRPRDIVQSQAGLSGAEKQQHLLQAITDYYYQQHADACALRGDQPIPVIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIVGGSEHIRYCGSPISLSFDETGKAKSVHLVSFSEGKLHAVETLEVPVTQPLSVLKGDLDAITAQLEQWRGTALNPPVWLDIEITTDDYLHDMQRKIQALTEDLPVEVLLVRRSREQREKILLSAQRETLSELRVEEVFERRLSQEEIDDAKRARLSELFSHTLHALNDEEENA
>NZ_CP017990.1|WP_008503265.1|1098165_1098855_+|phosphate-response-regulator-transcription-factor-PhoB
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNVWGTNVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRFSTRF
>NZ_CP017990.1|WP_058841165.1|1098876_1100172_+|phosphate-regulon-sensor-histidine-kinase-PhoR
MLERLSWKRLVFELILCCIPAFLLGAFLGHLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGSGSWEPLLYGLHQMQMRNKKRRRELGSLIKRFRSGAESLPDAVILTTEEGTIFWCNGLAQQLLGLRWPDDNGQNILNLLRYPEFTLYLKKRDFTRPHNLKLNNGRHLEIRVMPYSDKQWLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMQEQTLEGAPREKALHTMREQTHRMEGLVKQLLTLSKIEAAPSLALNDTIDVPMMLRVVEREAQTLSHKKHHLTFEVDNTLKVLGSEDELRSAISNLVYNAVNHTPEGTNIVVRWHHAPTGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLDIQSTLGKGTRFSFVIPERLIAKKIA
>NZ_CP017990.1|WP_023310545.1|1100581_1101901_+|branched-chain-amino-acid-transporter-carrier-protein-BrnQ
MTHHLKSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDGAMPLFIYSLIYFAIVILVSLYPGKLLDTVGNFLAPLKIVALIVLAVAAIVWPAGPISDAMDAYKNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTIWAGLMAGVGLTLLYLALFRLGSDSAMLVEQNANGAAILHAYVQHTFGGAGSMLLAALIFLACLVTAVGLTCACAEFFAQYLPLSYRTLVFILGIFSMAVSNLGLSHLIQVSIPVLTAIYPPCIVLVVLSFTRPWWNNSSRIIAPAMFISLIFGILDGIKASAFAHILPAWTQRLPLSEQGLAWLMPTVVALVLAIIWDRAAGRQVASNAH
>NZ_CP017990.1|WP_063408750.1|1101982_1103356_+|proline-specific-permease-ProY
MESTNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPSASSFSRYAQENLGPLAGFITGWTYCFEILIVAIADVTAFGIYMGVWFPAVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGISAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGIAFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKVFAKTSRRGTPWVTVVVMTVALLFSVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLSPDEAKALKFKVPGGVATTVVGLIFLVFIIALIGYHPDTRISLYVGCAWIVLLLVGWVFKCRRDRQLAEAQ
>NZ_CP017990.1|WP_059446578.1|1103890_1105708_+|maltodextrin-glucosidase
MLNAWHLPVAPFVKQNKDNLVITLWLAGENQPERVTLRAEIDNEETGLKMHRLRSQPLPGITAWRANIDLSSGQPRRRYSFKLLWNNRQLWFTPQGFSRFPPARLEQFAVDYPDNGPQWVNDQVFYQIFPDRFARSEKRTADQDKIYHHHAAGHDIILKAWDEPLTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDAQFGGDEALLRLRKNTQNEGMRLILDGVFNHSGDSHAWFDRHNQSMGGACHNPESPQRDWYSFNEEGRALDWLGYASLPKLDFQSPTLVNEIYGGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNLQHVAGITRSAKAAQPEAFVFGEHFGDARQWLQNDAEDAAMNYRGFTFPLWGFLANTDISYDPNHIDAETCMAWMENYRAGLSHQQQLRMFNQLDSHDTARFKSLLGKDVARLPLAVTWLFTWPGVPCIYYGDEVGLDGNNDPFCRKTFPWEPEKQDKVLFSLYQRLAKLRKQSLALRYGGCQVVYAHDNVVVFARVYNQQRVLVAINRGEACEVVLDDSPLLKVAAWKNKEGKATIQDGVLALPAVSATIWFGS
>NZ_CP017990.1|WP_063408749.1|1105796_1108412_+|DUF2339-domain-containing-protein
MDELYILGCLFLVFALVVAPVLAVIGFNRSTAARQEIARLRQRIEALEQRGANEIAPEPVQSAAPAVVTAPVVEDAPAPVDPWRSDTPAAVAEPAPAPTPAAKQPSAFGGILTSLVRWFMQGNPLAKLGILLLFLGLSFLLRYTVEHSLFPLELRLVATALFAIVLLVVGWRLRHKQRVYALILQGGATGVLYLTVFGAFRLWQMLPMTLAFALLVVICAASVGLAVLQKALSLAMLASLGGYLAPLLLSTGGGSFVALFSFYLLLSIGILAISIWQHWRELNLLGLLFTFGVGGLWGLNDYQPEDYWVCQLFLIANTLIFGVLSVVLSLRAQEKGKQIIDGVLLFAPPLIGFGMQYGMTRHWEYGPALSALGYGAFYLTLAFLALRRYPSIGRPLVMAALAIGGGFATLAIPLALSARWTAMAWALEGLGILWLGVQQNQRRMSYSGTALLVLALGSALWAQTNGVTSLSLLLIFTILSLCWLAAAWLWRTLFLPVSWALLAGGLLFWLVALLGASRLALTKELPILAGVLALTAASVWGWRQAAARLAWRELDASKWLLWPVMLLMVGYQLWHQQIVAAGWSNLAWCVALPAALMLLRRDGERLLPRIAMGLHLSLFWMILLALAAELYWFARSLPWGMAAWGSGLAMAAGGGVIMALSAAVRRRGWPFREWPALYACLAPIPAVVALLVLLVVTNFQDGVVYRQTWLPLVNPLEEGAAFALLGLVVFYRAGDRYYPAWLSQARPWPAVALMAFGFWWLNGALMRALAWYGDVAWNMASLWDSRLIQTSFALFWMLSALVVMIHATRRASRQEWLCGAALLGVVMVKLMLVDSAGGGGLSRAVAFIGVAILVLIVGYFSPLPPKTGDEK
>NZ_CP017990.1|WP_063408748.1|1108408_1109794_+|DUF3999-domain-containing-protein
MKWMKAVACTALLALSGPAFCDEGQTESPRDYAFGLSLDTSVPSQWYRVLLPLAVYEQSTSPDLHDVRVFNQSGEPVPFSLVSATRPQTPAQSTPLRLFPLDASPLAASQGSGDSDKILLRSGNGVEIVLEGQKAAAAGQHYLLTLPEHATGELAISQLQLLWNTPQTPWQGTASVYYSEDLKRWYTLREDMPLLDVVSGQDRLKLDRIDTDTVLSPDANRYLMVVLNAQSQRITLTGVNAISAPAQAAPEAIDLEGEGEQLSTSEAQWHWARPQPLRAVSISLNGDGVLPVEIAWRSTEKDAWHPLKKEVLYRLEGKTSPPVSLNGGLVQAVKITTLNARLPEYLPSVTGHRDRYDLVFNAQGKAPYVLAWGNGAAKPASVEPGMLIPADLRKTYDMANLPQADILDDVALGGQERLTATSAAERESRMNTLLVWGVLIAGVILLAGMAWRIWRETQRKA
>NZ_CP017990.1|WP_014168840.1|1109836_1110439_-|peroxiredoxin
MVLVTRPAPDFTAAAVLGNGEIVENFNFKQHTNGKATVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGAVKYAMVADIKREIQQAYGIEHPDAGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEHGEVCPAQWEKGKEGMNASPDGVAKYLSENVSSL

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Crispr_ID: NZ_CP017990_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017990_3

1198641-1198778

Orphan

Consensus_repeat	Method
TGGTTGCCGTTTTTAGTGTTTGTTCCCTCTCCCCGAGGGAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017990_3

>merge|NZ_CP017990|3|1198641-1198778|CRISPRCasFinder
TGGTTGCCGTTTTTAGTGTTTGTTCCCTCTCCCCGAGGGAGAGTGCCTGGGTGAGGGCATCAGGCCGCACAAGGTAAAAGCAAAACGGCAACCTGTGGTTGCCGTTTTTAGTGTTTGTTCCCTCTCCCCGTGGGAGAG

>NZ_CP017990|3|3|1198641-1198778|CRISPRCasFinder
TGGTTGCCGTTTTTAGTGTTTGTTCCCTCTCCCCGAGGGAGAG	TGCCTGGGTGAGGGCATCAGGCCGCACAAGGTAAAAGCAAAACGGCAACCTG
TGGTTGCCGTTTTTAGTGTTTGTTCCCTCTCCCCGTGGGAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017990.1\|WP_063409629.1\|1204546_1205341_-\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|226258
NZ_CP017990.1\|WP_088544662.1\|1202093_1203746_+\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236566
NZ_CP017990.1\|WP_063409371.1\|1198809_1200486_-\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
NZ_CP017990.1\|WP_003858972.1\|1192407_1192740_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP017990.1\|WP_000127359.1\|1189784_1190336_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP017990.1\|WP_023343509.1\|1203867_1204347_-\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	unknown	unknown	gnl\|CDD\|182634
NZ_CP017990.1\|WP_023310608.1\|1192739_1193345_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP017990.1\|WP_006809841.1\|1195524_1196169_+\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_CP017990.1\|WP_063409372.1\|1196293_1197256_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP017990.1\|WP_063409630.1\|1205391_1207890_-\|copper-exporting-P-type-ATPase-CopA	unknown	unknown	gnl\|CDD\|182635
NZ_CP017990.1\|WP_088545029.1\|1208119_1208311_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017990.1\|WP_088544663.1\|1208831_1209968_-\|phage-late-control-D-family-protein	unknown	unknown	gnl\|CDD\|222877
NZ_CP017990.1\|WP_023310609.1\|1193455_1195330_+\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP017990.1\|WP_023310607.1\|1190424_1192353_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
NZ_CP017990.1\|WP_088545030.1\|1210121_1211303_+\|phage-tail-sheath-family-protein	unknown	unknown	gnl\|CDD\|226028
NZ_CP017990.1\|WP_023310613.1\|1200715_1201924_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP017990.1\|WP_063409374.1\|1188678_1189206_-\|primosomal-replication-protein-N''	unknown	unknown	gnl\|CDD\|182236
NZ_CP017990.1\|WP_063409373.1\|1189256_1189634_+\|DUF454-family-protein	unknown	unknown	gnl\|CDD\|182520
NZ_CP017990.1\|WP_023310611.1\|1197318_1198623_+\|inosine/guanosine-kinase	unknown	unknown	gnl\|CDD\|185033
NZ_CP017990.1\|WP_074172047.1\|1208543_1208792_-\|ogr/Delta-like-zinc-finger-family-protein	unknown	unknown	gnl\|CDD\|137468

Protein	Function_ID	Function_description	E-value
NZ_CP017990.1\|WP_063409629.1\|1204546_1205341_-\|TraB/GumN-family-protein	gnl\|CDD\|226258	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown].	2.94689e-82
NZ_CP017990.1\|WP_088544662.1\|1202093_1203746_+\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl\|CDD\|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0
NZ_CP017990.1\|WP_063409371.1\|1198809_1200486_-\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
NZ_CP017990.1\|WP_003858972.1\|1192407_1192740_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	4.3454e-46
NZ_CP017990.1\|WP_000127359.1\|1189784_1190336_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	1.28318e-101
NZ_CP017990.1\|WP_023343509.1\|1203867_1204347_-\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	gnl\|CDD\|182634	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.	4.76265e-112
NZ_CP017990.1\|WP_023310608.1\|1192739_1193345_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.85599e-121
NZ_CP017990.1\|WP_006809841.1\|1195524_1196169_+\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	3.0465e-135
NZ_CP017990.1\|WP_063409372.1\|1196293_1197256_+\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.95307e-165
NZ_CP017990.1\|WP_063409630.1\|1205391_1207890_-\|copper-exporting-P-type-ATPase-CopA	gnl\|CDD\|182635	PRK10671, copA, copper-exporting P-type ATPase CopA.	0
NZ_CP017990.1\|WP_088544663.1\|1208831_1209968_-\|phage-late-control-D-family-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	2.48584e-134
NZ_CP017990.1\|WP_023310609.1\|1193455_1195330_+\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP017990.1\|WP_023310607.1\|1190424_1192353_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP017990.1\|WP_088545030.1\|1210121_1211303_+\|phage-tail-sheath-family-protein	gnl\|CDD\|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	2.91843e-153
NZ_CP017990.1\|WP_023310613.1\|1200715_1201924_-\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.09076e-114
NZ_CP017990.1\|WP_063409374.1\|1188678_1189206_-\|primosomal-replication-protein-N''	gnl\|CDD\|182236	PRK10093, PRK10093, primosomal replication protein N''; Provisional.	5.71561e-78
NZ_CP017990.1\|WP_063409373.1\|1189256_1189634_+\|DUF454-family-protein	gnl\|CDD\|182520	PRK10527, PRK10527, DUF454 family protein.	4.8016e-75
NZ_CP017990.1\|WP_023310611.1\|1197318_1198623_+\|inosine/guanosine-kinase	gnl\|CDD\|185033	PRK15074, PRK15074, inosine/guanosine kinase; Provisional.	0
NZ_CP017990.1\|WP_074172047.1\|1208543_1208792_-\|ogr/Delta-like-zinc-finger-family-protein	gnl\|CDD\|137468	PRK09678, PRK09678, DNA-binding transcriptional regulator; Provisional.	8.65038e-15

>NZ_CP017990.1|WP_023310611.1|1197318_1198623_+|inosine/guanosine-kinase
MKFPGKRKSKHYFPVDARDPLLQQIQPENETSAAWVVGIDQTLVDIEAKVDDAFVARYGLSAGHSLVIEDDVAEALYQELVRENLITHQFAGGTIGNTMHNYSVLADDRSVLLGVMCSNIEIGGYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISDSGERTFAISPGHMNKLRAESIPEEVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKKYNVPVVLTLGTKFVIADNPEWWQAFLKEHVSILAMNEEEAEALTGESDPLLASDKALDWVDLVLCTAGPVGLYMAGFTEEESKRKTQHPLLPGAIAEFNQYEFSRGMRYKDCLNPLRIYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANAYHKTNVPNSSKHKFSWLTYSSLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEEAYWDR
>NZ_CP017990.1|WP_063409372.1|1196293_1197256_+|ferrochelatase
MSQAKTGILLANLGTPEAPTSDAVKRYLRQFLSDTRVVDFPRLLWWPLLRGVILPIRSPRVAKLYQSVWMEEGSPLMVYSRRQEKALAARLPDMPVALGMSYGKPSLQSAVESLLAQGVDHIVVLALYPQYSCSTVAAVWDELARILATRRRIPGVTFIRDYADNDLYIKALANSVRASFEKHGEPDLLLLSYHGIPQRFANEGDDYPQRCRDTTRELVSALGLPPEKVMMTFQSRFGREPWLTPYTDETLKMLGEKGVKHIQVMSPGFSADCLETLEEIAVQNREFFLEAGGEKYEYIPALNDSPEHIDMMVSLVTNSR
>NZ_CP017990.1|WP_006809841.1|1195524_1196169_+|adenylate-kinase
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAASGRVYHIKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYTKEAQAGNTKYAKVDGTKAVADVRAELEKILG
>NZ_CP017990.1|WP_023310609.1|1193455_1195330_+|molecular-chaperone-HtpG
MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFNKENRTLTIADNGIGMNRDEVIDHLGTIAKSGTKAFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDSAENGVLWESKGEGEYTVDDITKADRGTEITLHLREGEDDFLNDWRVRSIISKYSDHIALPVEIEKQEEKDGETVVSWEKINKAQALWTRNKSEIKDDEYNEFYKHIAHDFTDPLTWSHNRVEGKQEYTSLLYIPAQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSTVTRNLRNALTKRALQMLEKLAKDDAEKYQTFWKQFGLVLKEGPAEDTANVETIAKLLRFASTHTDSSAQTVSLEEYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKAFQSVAKADESIDKLADEVDESAKEAEKALEPFVERVKTLLGERVKEVRFTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQAVPEVKYIFELNPDHPLVKRAADTQDDARFAEWVELLLDQSLLAERGTLEDPNLFIKRVNALLLA
>NZ_CP017990.1|WP_023310608.1|1192739_1193345_+|recombination-protein-RecR
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICTNPRRQENGQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLESETIKEVILATNPTVEGEATANYIAELCSQYGVDASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIIF
>NZ_CP017990.1|WP_003858972.1|1192407_1192740_+|YbaB/EbfC-family-nucleoid-associated-protein
MFGGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIDETQKEKMASVSSGMQLPPGFKMPF
>NZ_CP017990.1|WP_023310607.1|1190424_1192353_+|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRAQLEHILDEEKIVHEPRALQLLARAADGSLRDALSLTDQAIASGDGKLSTEAVSTMLGTLDDDQALSLIEAMIAANGERVMSQVNAAAARGIEWEGLLVEMLSLLHRVAMLQLSPSAIGADMAAIEQRMRELARTVPPADVQLYYQTLLIGRKELPFAPDPRMGVEMTLLRALAFHPRMPLPEPEAPRQSFAPVAPTAVMSPQQVPPQPTPPPQQNVPLSDATSSVLAARSQLQRAQGVTKPKKSEPAAPGRARPVNNAALERLASVTERVQSRPAPSALEQKAPVKEEAYRWKATTITETVKEEVATPKALKKALEHEKTPELSAKLAEESIARDAWAAEVSKLQLPKLVEQVALNAWKEQDGNQVRLHLRPGQRHLNSPGAQKALAEALTALQGAPVELTIIEDDNPAVKTPLEWRQAIYEEKLAQAREAIIADNNIQTLRRFFDADLDEESIRPI
>NZ_CP017990.1|WP_000127359.1|1189784_1190336_+|adenine-phosphoribosyltransferase
MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALAMGVGFVPVRKPRKLPRETIAESYELEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFIINLFDLGGEQRLEKQGITSYSLVPFPGH
>NZ_CP017990.1|WP_063409373.1|1189256_1189634_+|DUF454-family-protein
MKRIILIIIGWLAVVLGTLGVFLPLLPTTPFILLAAWCFARSSPRFHHWLLYRSWFGGYLRHWQKHRAMPPGAKPRAIAVILITFAISLWLVKMMWVRILLLAILSCLLIFMWRIPVVDEKQQKH
>NZ_CP017990.1|WP_063409374.1|1188678_1189206_-|primosomal-replication-protein-N''
MKTALLLERLQNQLVALREQATPLMGHATLKPRFDRQLFRTRSTVIQDYLAEAQTNLDELRHAVESEQQEQVAWLAEHLTEQITALHREIAAWPLRAWDSASPGLGKWQRKRLENQEFERRLFEMKRERETRLNNSETLEEQQLLMREISALEGRIVRCRQALDEIERVIERLTR
>NZ_CP017990.1|WP_063409371.1|1198809_1200486_-|Kef-family-K(+)-transporter
MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIGVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEKDNVGLTSLALDMSITIGKVVAFIAIMMLVGRRLVPWIMSRSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMVLIHQPLAVLGTLAIIIFGKSLAAFFLVRMFGHSPRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLDKTETLEEQTLEEAIEEEKQIPVDICNHALLVGFGRVGSLLGEKLMAQGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMNLAHLDCARWLLLTIPNGYEAGEIVASARAKCPTIEIIARAHYDDEVEYITERGADKVVMGEREIANTMLTLLEKPPVEEAVTG
>NZ_CP017990.1|WP_023310613.1|1200715_1201924_-|MFS-transporter
MAISESTQPVSGAPASRTSFKVLGAISLSHLLNDMIQSLILAIYPLLQSEFSLTFVQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLSGLVLLAMAGSFEAVLIAAALVGTGSSVFHPESSRVARMASGGRHGLAQSLFQVGGNFGSSLGPLLAAVIIAPYGKGNVAWFVLAALLAIIVLAQISRWYAAQHRVNKGKPKAKVINPLPRNKVILAVSVLLVLIFSKYFYMASISSYYTFYLMQKFGLSVQNAQIHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLILPYASLEWTGILTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGMVADHTSIFLVYKICAFLPLLGMLTIFLPDNRHKA
>NZ_CP017990.1|WP_088544662.1|1202093_1203746_+|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MKLMKRGVALALIAAWGLVSLPAQAYEKDKTYKITILHTNDHHGHFWRSEYGEYGLSAQKTLVDGIRKEVAAQGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDAMAVGNHEFDNPLTVLRQQEKWAKFPFLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEFFTDIEFRKPADEAKLVIQELQQNEKPDVIIATTHMGHYDNGEHGSNAPGDVEMARSLPAGSLAMIVGGHSQDPVCMASENKKQVDYVPGTPCAPDRQNGIWIVQAHEWGKYVGRADFEFRNGEMKLVHYQLIPVNLKKKVTYPDGKSERVHYTPEIAENQQMLSLLTPFQNKGKAQLDVKIGTLNGRLEGDRSKVRFVQTNMGHLVLAAQMARTGADFGVMSGGGIRDSIEGGNITYKDVLKVQPFGNVVVYADMSGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRLATLSFNATGGDGYPHIDNKPGYVNTGFIDAEVLKQFIEQNSPIDVNAYEPKGEVSWQ
>NZ_CP017990.1|WP_023343509.1|1203867_1204347_-|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK
MTPAVKLLEKNNISFRIHTYDHDPNETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGGISPLGQKKRLPTLIDAPSQEFDTIFISGGKRGLDIELAAGDLAKMLDAKFADIARRD
>NZ_CP017990.1|WP_063409629.1|1204546_1205341_-|TraB/GumN-family-protein
MGLFNRIKASFRALFPRRYAWPGLDISLPGGQHLHLVGSIHMGTQDMSPLPPGLIKLLKRADALVVEADISGQESPFAGLESDLSLAERLDDARLAELTRVADETGVSLSMIDTLPLWQIAMVLQATQAQRLGLRGDYGIDYQLLNAARARSLPVIELEGTDSQIALLRQLPDDGLMLLDDTLTHWHTNARLLQTMIGWWLDAPPEDGKLALPSTFSESLYDVLMNARNKAWRQTLHALPAGHYVVAVGALHLYGEGNLPSLLK
>NZ_CP017990.1|WP_063409630.1|1205391_1207890_-|copper-exporting-P-type-ATPase-CopA
MSHTIDLTLDGLSCGHCVKRVKESLEQRPDVESADVTIDHAAVTGSASADALIDTIKQAGYGAELSHPKAKPLAESSSPSEALTAATPELPAADDIDDSQQLLINGMSCASCVSRVQNALQAVPGVAQARVNLAERTALVMGSASAADLVQAVEKAGYGAEAIEDDAERRERQQETAIATMKRFRWQAIVALLVGIPVMVWGMMGDNMMVTDDNRTLWLVIGLITLAVMVFAGGHFYTSAWKSLKNRTATMDTLVALGTGAAWLYSMSVNVWPQWFPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALERLLDLTPPTARVVTDEGEKSVPLAEVQPGMTLRLTTGDRVPVDGKITQGEAWLDEAMLTGEPIPQQKTDGDAVHAGTVVQDGSVLFTASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAIFVPVVVGIALLSAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLTEGKPQVVAVTTAGIAQEEALRLAAALEQGSSHPLARAILDKANASALPQVSNFRTLRGLGVSGEAEGHALLLGNQALLNENGIDTAELESELKAQASRGATPVLLAIDGKAAALLAVRDPLRQDSVDALQRLHRAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKADAIKKLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISKATLRNMKQNLLGAFVYNTLGIPIAAGILWPLTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKD
>NZ_CP017990.1|WP_088545029.1|1208119_1208311_-|hypothetical-protein
MIQHKDKESLEEIFKTSCLMPKKGLSVDKVVSMGWTSGIAHVKVYVKGNLYDLWTNTENLSAD
>NZ_CP017990.1|WP_074172047.1|1208543_1208792_-|ogr/Delta-like-zinc-finger-family-protein
MFRCPFCGAMARTRTSRKITDMTIRQYHQCQNLECSRSFTTLNSVEREVTKRAGTAPLPPDFIPRDAFPASHYGRDQLSLSL
>NZ_CP017990.1|WP_088544663.1|1208831_1209968_-|phage-late-control-D-family-protein
MAFTDLTKSLNDAVSSYNDSLTEAVKSPGFSITMGGKVLTQLDDRIMSLSLTDNRGFDADQLSISIDDSDGMVALPPRGAELAVSIGWLGEPLIYKGLYTVDEVSHEGPADTIGVTARSADFREEFNVKREVSWHDVTVERVVSALAHRYGLKAQISEMLMDIEIDHADQTQESDMSFLTRMAEMLGAIATVKNGSLLFILPGGGVTADGKALPSASIDRTSGDRHRFRIADRDAYTGVRAYWLDLNFGKKKKVSVKRRKPAKPKKEKSNSREGDYMEGADGNVYVLRKTYQNEDAAKRAAAAKWQQLQRGAAEFSITLARGRAELYPEMHVTVSGFKDEIDNQDWIIARAEHVIDDSGFTTRLELEAKIPDWIAETE
>NZ_CP017990.1|WP_088545030.1|1210121_1211303_+|phage-tail-sheath-family-protein
MSETRFHGVRVRENTDLVTAINDIESSVIGVVAVADDADAETFPLNTPVLLTRVNNVLGKAGKTGSLYKTLKAIADQTSPKVIVVRVAAAKEEEGAKTQSQLIMGGTAEDGSYTGMYAFLTAEQKVGYRPRILAVPGYDTEEVTSALCVIAQNLRAFVYASCYGCKTMAEATAYRATFAYRELMLIWPDFIAYNPLTGENETFPAPAYACGLRALIDNNQGWHKSLSNVAVKNVLGISQDVFWSLQAEDSDANELNNKEITTLIKRNGFRFWGNRVTDTKDYIFEVYTRTAQILADSIAEAQFESVDEPLSPANVKDVVSGISGKLNSLVTQGRLIGAECWFDILDNPTTGLRQGQVRIRYKYTPVPPMEDLTLYQTFTDEYFESAFSSLGGA

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Crispr_ID: NZ_CP017990_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017990_4

1792766-1792863

Orphan

Consensus_repeat	Method
GTAGTGCAGGAGATTCACTAGGGGGTAGTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017990_4

>merge|NZ_CP017990|4|1792766-1792863|CRISPRCasFinder
GTAGTGCAGGAGATTCACTAGGGGGTAGTGCAAATCGTTCACTACCTGGTGCAGCAGATTCACCCCGTAGTGCAGGAGATTCACTAGGTGGTAGTGCA

>NZ_CP017990|4|4|1792766-1792863|CRISPRCasFinder
GTAGTGCAGGAGATTCACTAGGGGGTAGTGCA	AATCGTTCACTACCTGGTGCAGCAGATTCACCCC
GTAGTGCAGGAGATTCACTAGGTGGTAGTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017990.1\|WP_023296237.1\|1791363_1792056_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP017990.1\|WP_059509754.1\|1789113_1789521_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017990.1\|WP_048703153.1\|1797034_1797421_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|374892
NZ_CP017990.1\|WP_063922403.1\|1787306_1788050_-\|ORF6N-domain-containing-protein	unknown	unknown	gnl\|CDD\|378443
NZ_CP017990.1\|WP_044596882.1\|1789710_1790118_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017990.1\|WP_058660285.1\|1788919_1789114_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017990.1\|WP_001274212.1\|1798847_1799156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017990.1\|WP_023332570.1\|1795613_1796396_+\|antitermination-protein	unknown	unknown	gnl\|CDD\|367572
NZ_CP017990.1\|WP_042889584.1\|1788095_1788923_-\|serine-protease	unknown	unknown	gnl\|CDD\|366488
NZ_CP017990.1\|WP_058651202.1\|1797688_1798318_+\|glycoside-hydrolase-family-19-protein	unknown	unknown	gnl\|CDD\|225720
NZ_CP017990.1\|WP_044596880.1\|1790438_1790825_-\|S24-family-peptidase	unknown	unknown	gnl\|CDD\|119397
NZ_CP017990.1\|WP_058651199.1\|1793328_1794210_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181180
NZ_CP017990.1\|WP_058651200.1\|1794206_1795586_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273206
NZ_CP017990.1\|WP_048859479.1\|1792209_1792425_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP017990.1\|WP_088544728.1\|1790898_1791192_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017990.1\|WP_058651203.1\|1798325_1798601_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017990.1\|WP_044596881.1\|1790110_1790332_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017990.1\|WP_058651201.1\|1797410_1797689_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|368449
NZ_CP017990.1\|WP_058651205.1\|1799152_1799419_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017990.1\|WP_058651204.1\|1798551_1798752_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017990.1\|WP_058651202.1\|1797688_1798318_+\|glycoside-hydrolase-family-19-protein	gnl\|CDD\|225720	COG3179, COG3179, Predicted chitinase [General function prediction only].	2.00591e-70
NZ_CP017990.1\|WP_044596880.1\|1790438_1790825_-\|S24-family-peptidase	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	1.32132e-10
NZ_CP017990.1\|WP_058651199.1\|1793328_1794210_+\|ATP-binding-protein	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	8.05933e-35
NZ_CP017990.1\|WP_023296237.1\|1791363_1792056_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.88177e-29
NZ_CP017990.1\|WP_048859479.1\|1792209_1792425_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.71981e-20
NZ_CP017990.1\|WP_048703153.1\|1797034_1797421_+\|phage-holin-family-protein	gnl\|CDD\|374892	pfam16931, Phage_holin_8, Putative phage holin.	1.01867e-35
NZ_CP017990.1\|WP_063922403.1\|1787306_1788050_-\|ORF6N-domain-containing-protein	gnl\|CDD\|378443	pfam10543, ORF6N, ORF6N domain. This domain was identified by Iyer and colleagues.	1.00967e-15
NZ_CP017990.1\|WP_058651200.1\|1794206_1795586_+\|AAA-family-ATPase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	5.45609e-105
NZ_CP017990.1\|WP_058651201.1\|1797410_1797689_+\|phage-holin-family-protein	gnl\|CDD\|368449	pfam05449, Phage_holin_3_7, Putative 3TM holin, Phage_holin_3. This is a family of putative proteobacterial phage three-transmembrane-domain holins.	1.16161e-20
NZ_CP017990.1\|WP_023332570.1\|1795613_1796396_+\|antitermination-protein	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	2.29794e-27
NZ_CP017990.1\|WP_042889584.1\|1788095_1788923_-\|serine-protease	gnl\|CDD\|366488	pfam01145, Band_7, SPFH domain / Band 7 family. This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals.	1.48988e-26

>NZ_CP017990.1|WP_048859479.1|1792209_1792425_+|helix-turn-helix-domain-containing-protein
MAKAVYVAGGQSSLAKKVGVTQGAVWKWVRGIKKVSPVHAVAVSNAVNGVVKPHELRPDLPTLFPHPGNEV
>NZ_CP017990.1|WP_023296237.1|1791363_1792056_-|helix-turn-helix-transcriptional-regulator
MNTLAERLRLAMAHAGATQSQLAHRVGVSQGAIQKLTSGKAQSSGKIVDIAKALDVDPIWLSTGEGTMGPAKTPEQRMFGIDPWDKQTPLEDDEVEVPYLKDIEFACGDGSALNDDYNGKKLRFSKATLRKVGANSDGDGVLCFAAHGNSMEPVIADGSTVAINCHDKRIVDGKIYGINQGGWKRLKILYRSGPDKVTIRSYNSDEYPDEEVDMDSLEVLGRLFWVSTIF
>NZ_CP017990.1|WP_088544728.1|1790898_1791192_-|hypothetical-protein
MNTNSQPNPASQAFDIHAKLKASNSHWSYCYAVQPCEKGFNYQFNTTFVGEMEFAVYERIDNYFVLVDFFKSYDEACDDAKKIIDDHPDIKKMFSAI
>NZ_CP017990.1|WP_044596880.1|1790438_1790825_-|S24-family-peptidase
MQNAIAINQPIKTPQMLFGSDNINDFGNRVQSCRMEGDSMQPTIEPCEVVAFVDCGGRALTPGIYVYTMDVFGRPCLFIKRVEPLVCGSLKIISDNHHYETFTLNTDEQKEIKIHGRVVASLTVRRFV
>NZ_CP017990.1|WP_044596881.1|1790110_1790332_-|hypothetical-protein
MGVFKRQDIQEVNIKAEKLSGLSQTLFEYHDKLDRFQLKTICALVYDLAAEIHGWTEKEEEIVMSLEEEQRNG
>NZ_CP017990.1|WP_044596882.1|1789710_1790118_-|hypothetical-protein
MDKLIETYRRRILKAALLRHQRKTGSNCLVIKLNKGGINTVELTEILLDGLLRKFERLAFSEYGNVEGVKAIKGIYSSAVDVNGRGEFLTDSGKELIDELISELVEFVKKQKVEAPKTEGHEMEGSDGSYSDTNS
>NZ_CP017990.1|WP_059509754.1|1789113_1789521_-|hypothetical-protein
MNDKRISTTSIDSAFAKELQPVYVVSRHGYSRRFLSRSAAISNLAHYMVTKTFHRAGLNTNEPDEPVFSNGVLVNRMGQHTQQYLFAHNRCMRRIRRILERKREARKWLGKWDAMHDRFVKEQAELQASKPEGLR
>NZ_CP017990.1|WP_058660285.1|1788919_1789114_-|hypothetical-protein
MIAYLRVALSLVIVASVYGLFVPILISMKDTTAVLSGFALAILTPPCIYAICKGLVVTVNKEKK
>NZ_CP017990.1|WP_042889584.1|1788095_1788923_-|serine-protease
MKKAIMASIIALSAIGLVGCDRVEPGNVGIKVNKLGDDKGVGEVVGVGRYWTGWNTEVYIFPTFKQMKTYDDAFNFQMSDGTTIGYHIGVAYKVDPTKVTTVFQTYRKGVDDITDTDLRQKIADALNRLASRMSTDKFIDGGKAELLENALKEIQSDMGPVGIQVISLSYVGRPEYPPTVIDSINAKVTANQKTLQREQEVKQREAEANMLRAEADGQADAKLKLAEAEAKSIQIRGQAMRENPEVLQLEAINKWNGTLPQYMTSGANTPFIQVK
>NZ_CP017990.1|WP_063922403.1|1787306_1788050_-|ORF6N-domain-containing-protein
MNTVTINNKQLPAVEYRGQRVVTLAMIDEVHQRPEGTARAAFNRNREHFINGVDYAELGADVIRTDLPEGTFSKFAPSGIVLFESGYLMLTKPFNDDLAWQVQRELVNSYFRTRAPLTEIEMIAAMAADAVRQQKRLNHVEEQIETVTEAVENIKRGTMRAGYVGYRQVVAKSGMSDAKCRNLVNAYRIPTDTHEFMTPDGLLSRRAIVELEPFMAAFRQMMSEAEPRGTRWYHPKMGLFQAIGWEG
>NZ_CP017990.1|WP_058651199.1|1793328_1794210_+|ATP-binding-protein
MLSIKQREEREALVAKREGLREELAFAVEHKKPWQWGSWESGEVHAADCEKHGNYQRISLTGKAYRGVENVKYSQCPECVKAELADIESSLRALRVVDLMDNAGIARRFEACEFDNYQAVNPDAAKNLAVCQRYTASWPDRLKAGTGLVMTGNCGTGKNHLAVAMAKSIIRGHLAKVEITDVMRLTRAVKSTWRHNAEMTEEDVIERFASLDLLIIDEVGVQFGSPTEMTILQEIINARYESILPTILISNLTFDQLKETIGERIVDRVTDGGRNRLAFGWGSFRAIASGVVA
>NZ_CP017990.1|WP_058651200.1|1794206_1795586_+|AAA-family-ATPase
MTPVWKNEDLEGAVIGAIFLRGADPEVLDILSRVPATAFSVPQYREIYTGICRQARGAGVIDPVLLCENMPKHSAIIMDSSRIAWAKSALVSYVSTLERNAAVRDAEAVIERALADLRNAHNSDAALSAFRAAQNSIAAITLEEKTVQPVHIDDILPAVVDRVDARNRGLEEARSLMTGIEELDAKTGGIEPTDLVFIAARPSMGKTELALDIIDKVSEQGRGVLFFSMEMPNIQIGERMVSAAGGMSVSRLKKAADFDDEDWARLTNGVERLTGRSIWMVDSTDLTVDQIQQIATRLQLAHPEIALVVVDYLALIKIESTARYDLAVGEVSKGLKRLAKSNKTPVLALSQLSRGVESRPNKRPMNSDLKNSGEIEADADLIMMLYRDEVYNPESPAKGIAEINVTKQRNGELGTIYRRFYNGHFLPIDQELAKQRSAPQQKAQTRRYSKEKHSSNADY
>NZ_CP017990.1|WP_023332570.1|1795613_1796396_+|antitermination-protein
MKLEASLKHFSPQGMHISDDVKGTSPDRLTGTDVMAAIGTTSSRARFGLAAFFGKAGISKTDEQLAVQALARYAMDVAPKNVRKAAGGQFGWCMQMLAQFAFADYSRSAATSVTCHSCSGTGFISGNEDVVKHPGIFDADGAEVVAPKIKNELVNRVCGTCGGKKVILARCRCGGKGEVLDRKATKDRGAPVFKTCERCSGNGFSAISSATVHRAILKRLPDLHQSSWSRNWKPFYEMLVDTLRQGERHAAVEFEKATTY
>NZ_CP017990.1|WP_048703153.1|1797034_1797421_+|phage-holin-family-protein
MSDPVSGTTVAAGGLLVSVLYGVFTHTDFGVVFGAFGGAVFYVATAANLTRARLAAYFLTSFIVGVLGAGFVGSWLNAASSYEKPLDALGAVILSALCIKILTFLNNQDLNTLFGFFSRLRGGGGNGN
>NZ_CP017990.1|WP_058651201.1|1797410_1797689_+|phage-holin-family-protein
MVIDPSAVLNAFICSVIVVVLMFYQRHGARHRPFISILAYIIILVYAVIPWQFIFGLYRDSSWLVVVANLLICAAVMKVRGNLARLVDLLRH
>NZ_CP017990.1|WP_058651202.1|1797688_1798318_+|glycoside-hydrolase-family-19-protein
MNQILFQKAAGISAGLALRWFQHIDAAMKEFGITAPLDQAMFIAQMGHESTGFTRLVENLNYAAENLVPTFGRHRITPQQAAALGRTATQPANQKAIANLVYGGEWGKKNLGNQVAGDGWKYRGRGLKQITGLSNYRNCGNALKLDLVTQPELLEQDEYAARSAAWFYVSHGCLLHSGDVERVTLLINGGRNGLDKRRALFNLAKSVLV
>NZ_CP017990.1|WP_058651203.1|1798325_1798601_+|hypothetical-protein
MGFETLIGIAAAVIAAIAGAFGLGHIRGSSKAEAKADQQRTEDNAAATVAAAERRVETTKEASNVQQTVNHMPDDDVDRELRDTWKRPGGG
>NZ_CP017990.1|WP_058651204.1|1798551_1798752_+|hypothetical-protein
MLIASCVTRGSVPVVVDTACDWVKPIYLTEHDIDVMDRQTKKDILAHNKAWQANCQKPIAVTIPKG
>NZ_CP017990.1|WP_001274212.1|1798847_1799156_+|hypothetical-protein
MSAINHIKNPLTIIGIFAGIVEVSANLVLPFLNDSQQSTYLWFLMFFPAGLVIVFFLTLNFNHVALYAPSDYSNDRGFMQANGKMIGNDVQDTDATQGFELT
>NZ_CP017990.1|WP_058651205.1|1799152_1799419_+|hypothetical-protein
MNKFISSTFNNTIVELDGNHYERCVFENCEIVYKGLQPFNLINCNFIACKWKFEGAASNTINFLKVMYKDMGEFGKKMVEATFENIKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017990_4	4.1\|1792798\|34\|NZ_CP017990\|CRISPRCasFinder	1792798-1792831	34	NZ_CP017990.1	1395296-1395329	2	0.941
NZ_CP017990_4	4.1\|1792798\|34\|NZ_CP017990\|CRISPRCasFinder	1792798-1792831	34	NZ_CP017990.1	1395362-1395395	2	0.941
NZ_CP017990_4	4.1\|1792798\|34\|NZ_CP017990\|CRISPRCasFinder	1792798-1792831	34	NZ_CP017990.1	1395428-1395461	2	0.941

1. spacer 4.1|1792798|34|NZ_CP017990|CRISPRCasFinder matches to position: 1395296-1395329, mismatch: 2, identity: 0.941

aatcgttcactacctggtgcagcagattcacccc	CRISPR spacer
aatagttcactacctggtgcaggagattcacccc	Protospacer
*** ****************** ***********

2. spacer 4.1|1792798|34|NZ_CP017990|CRISPRCasFinder matches to position: 1395362-1395395, mismatch: 2, identity: 0.941

aatcgttcactacctggtgcagcagattcacccc	CRISPR spacer
aatagttcactacctggtgcaggagattcacccc	Protospacer
*** ****************** ***********

3. spacer 4.1|1792798|34|NZ_CP017990|CRISPRCasFinder matches to position: 1395428-1395461, mismatch: 2, identity: 0.941

aatcgttcactacctggtgcagcagattcacccc	CRISPR spacer
aatagttcactacctggtgcaggagattcacccc	Protospacer
*** ****************** ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017990_4	4.1\|1792798\|34\|NZ_CP017990\|CRISPRCasFinder	1792798-1792831	34	MH178096	Aeromonas phage AsXd-1, complete genome	10853-10886	0	1.0
NZ_CP017990_1	1.1\|324296\|49\|NZ_CP017990\|CRISPRCasFinder	324296-324344	49	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	167171-167219	9	0.816

1. spacer 4.1|1792798|34|NZ_CP017990|CRISPRCasFinder matches to MH178096 (Aeromonas phage AsXd-1, complete genome) position: , mismatch: 0, identity: 1.0

aatcgttcactacctggtgcagcagattcacccc	CRISPR spacer
aatcgttcactacctggtgcagcagattcacccc	Protospacer
**********************************

2. spacer 1.1|324296|49|NZ_CP017990|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 9, identity: 0.816

tctccctctcccgtgggagagggtcggggtgagggcaccagaccgcacg	CRISPR spacer
caccctctccccgtgggagagggtcggggtgagggcatcagaccgcacc	Protospacer
. .**....****************************.**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1203867 : 1257349

Enterobacteria_phage(46.15%)

protease,tail,integrase,head,terminase,plate,tRNA,capsid,portal

attL 1207971:1207990|attR 1239889:1239908

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023343509.1\|1203867_1204347_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_063409629.1\|1204546_1205341_-	TraB/GumN family protein	NA	NA	NA	NA
WP_063409630.1\|1205391_1207890_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	2.8e-110	37.1
1207971:1207990	attL	NA	NA	NA	NA
WP_088545029.1\|1208119_1208311_-	hypothetical protein	NA	NA	NA	NA
WP_074172047.1\|1208543_1208792_-	ogr/Delta-like zinc finger family protein	Q858U4	Yersinia_virus	4.0e-09	50.0
WP_088544663.1\|1208831_1209968_-	phage late control D family protein	B9A7A9	Serratia_phage	7.9e-161	75.5
WP_088545030.1\|1210121_1211303_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	7.2e-173	75.9
WP_006117904.1\|1211303_1211819_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.7e-60	65.9
WP_063144371.1\|1211867_1212185_+\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	3.8e-20	54.1
WP_088545032.1\|1212190_1212346_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	2.0e-11	65.3
WP_088545031.1\|1212332_1215323_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.9e-226	47.9
WP_014072465.1\|1215337_1215826_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	2.4e-66	74.1
WP_088544664.1\|1215980_1216577_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	1.7e-74	68.5
WP_088544665.1\|1216576_1217968_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.4e-90	41.2
WP_088544666.1\|1217957_1218572_-\|tail	phage tail protein I	A0A1J0I2I4	Salmonella_phage	1.9e-68	63.7
WP_088544667.1\|1218564_1219461_-\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	7.5e-106	68.5
WP_088544668.1\|1219447_1219816_-	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	1.7e-35	64.3
WP_088544669.1\|1219812_1220394_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	4.1e-73	68.9
WP_088544670.1\|1220390_1221029_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	3.9e-56	52.7
WP_088544671.1\|1221021_1221492_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	6.6e-61	66.7
WP_088544673.1\|1221702_1222140_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	9.2e-09	37.9
WP_088544674.1\|1222136_1222682_-	lysozyme	A0A1W5P530	Pectobacterium_phage	1.0e-28	38.8
WP_088544675.1\|1222665_1222968_-\|tail	phage tail protein	NA	NA	NA	NA
WP_088544676.1\|1222958_1223159_-\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	3.7e-21	76.9
WP_088544677.1\|1223158_1223683_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.3e-44	54.1
WP_088544678.1\|1223781_1224639_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	2.7e-68	57.7
WP_063144357.1\|1224685_1225735_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	4.1e-103	51.3
WP_088544679.1\|1225758_1226595_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.7e-102	68.7
WP_088544680.1\|1226754_1228485_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	5.1e-268	76.0
WP_063613516.1\|1228484_1229543_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	4.8e-144	71.1
WP_088544682.1\|1230156_1230660_+	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_088544683.1\|1230698_1231397_-	DNA methylase	A0A0M4S5U3	Salmonella_phage	1.9e-96	76.4
WP_088544684.1\|1231596_1233987_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	0.0e+00	85.4
WP_088544685.1\|1233983_1234979_-	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	4.6e-173	87.2
WP_088544686.1\|1234978_1235176_-	hypothetical protein	NA	NA	NA	NA
WP_088544687.1\|1235175_1236036_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	2.1e-73	52.7
WP_088544688.1\|1236044_1236593_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	1.1e-14	30.3
WP_088544689.1\|1236589_1236814_-	hypothetical protein	NA	NA	NA	NA
WP_088544690.1\|1236882_1237155_-	hypothetical protein	NA	NA	NA	NA
WP_088544691.1\|1237175_1237403_-	DUF2724 domain-containing protein	A0A0M4S6M9	Salmonella_phage	7.3e-26	69.3
WP_181008671.1\|1237415_1237589_-	hypothetical protein	NA	NA	NA	NA
WP_145956707.1\|1237578_1237839_-	DUF4761 family protein	A0A0M5M1I3	Salmonella_phage	8.4e-10	50.7
WP_088545034.1\|1237851_1238190_-	hypothetical protein	NA	NA	NA	NA
WP_088544692.1\|1238438_1238738_+	helix-turn-helix transcriptional regulator	Q1JS29	Enterobacteria_phage	7.4e-26	56.6
WP_088544693.1\|1238807_1239830_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LA05	Escherichia_phage	1.3e-93	50.5
WP_059446547.1\|1239916_1240327_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
1239889:1239908	attR	NA	NA	NA	NA
WP_063409631.1\|1240323_1240776_-	NfeD family protein	NA	NA	NA	NA
WP_063409632.1\|1240772_1241687_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_063409633.1\|1241731_1242583_-	hypothetical protein	NA	NA	NA	NA
WP_059446546.1\|1242726_1243398_+	iron ABC transporter ATP-binding protein FetA	G3M9Y6	Bacillus_virus	7.8e-23	33.8
WP_023310623.1\|1243390_1244173_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_063409634.1\|1244222_1245077_-	co-chaperone YbbN	NA	NA	NA	NA
WP_014882827.1\|1245135_1245906_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_032661743.1\|1245934_1246558_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_023617272.1\|1246528_1247215_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-32	35.7
WP_063409635.1\|1247211_1249626_+	ABC transporter permease	NA	NA	NA	NA
WP_088544694.1\|1249809_1250955_+	porin	NA	NA	NA	NA
WP_063409637.1\|1251077_1252148_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_063409638.1\|1252232_1253300_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_063409639.1\|1253296_1253806_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.0e-19	41.1
WP_029741050.1\|1253967_1254153_-	hypothetical protein	NA	NA	NA	NA
WP_023310633.1\|1254221_1254431_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_063409640.1\|1254568_1255291_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_023310635.1\|1255294_1255789_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_063409641.1\|1255963_1257349_+\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	6.3e-43	33.2

DBSCAN-SWA_2

1319849 : 1405412

Enterobacteria_phage(30.77%)

tail,holin,head,terminase,portal,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063408927.1\|1319849_1321529_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	8.9e-60	31.1
WP_063408926.1\|1321542_1323015_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_023310694.1\|1323028_1323616_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_029741651.1\|1323744_1325778_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	9.9e-21	27.3
WP_063408925.1\|1325892_1326549_-	enterobactin synthase subunit EntD	NA	NA	NA	NA
WP_063408924.1\|1326658_1328899_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_063408923.1\|1329045_1330242_+	enterochelin esterase	NA	NA	NA	NA
WP_023310699.1\|1330252_1330465_+	MbtH family protein	NA	NA	NA	NA
WP_088544698.1\|1334416_1335217_-	iron-enterobactin ABC transporter ATP-binding protein	M1I1A6	Acanthocystis_turfacea_Chlorella_virus	1.7e-08	25.5
WP_072263169.1\|1335213_1336203_-	iron-enterobactin ABC transporter permease	NA	NA	NA	NA
WP_063408633.1\|1336202_1337207_-	Fe(3+)-siderophore ABC transporter permease	NA	NA	NA	NA
WP_063408634.1\|1337315_1338563_+	enterobactin transporter EntS	NA	NA	NA	NA
WP_063408635.1\|1338609_1339569_-	Fe2+-enterobactin ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_063408636.1\|1339757_1340933_+	isochorismate synthase EntC	NA	NA	NA	NA
WP_063408637.1\|1340942_1342553_+	(2,3-dihydroxybenzoyl)adenylate synthase EntE	NA	NA	NA	NA
WP_088544699.1\|1342563_1343418_+	isochorismatase	NA	NA	NA	NA
WP_088544700.1\|1343414_1344170_+	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase EntA	NA	NA	NA	NA
WP_029740111.1\|1344171_1344585_+	proofreading thioesterase EntH	NA	NA	NA	NA
WP_023310711.1\|1344734_1346840_+	carbon starvation protein CstA	NA	NA	NA	NA
WP_006809671.1\|1346936_1347134_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_023310712.1\|1347130_1347535_-	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	3.0e-06	34.1
WP_063408640.1\|1347506_1347812_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_032661029.1\|1347995_1348739_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_063408641.1\|1348796_1349885_-	oxidoreductase	NA	NA	NA	NA
WP_063408642.1\|1350044_1351547_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-17	27.9
WP_045402078.1\|1351543_1352539_+	ABC transporter permease	NA	NA	NA	NA
WP_023310718.1\|1352558_1353623_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_176600590.1\|1353752_1354994_+	hypothetical protein	NA	NA	NA	NA
WP_063408644.1\|1355097_1356297_-	S-methyl-5-thioribose kinase	NA	NA	NA	NA
WP_063408645.1\|1356401_1357418_+	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
WP_032641748.1\|1357460_1357931_+	SRPBCC family protein	NA	NA	NA	NA
WP_023310723.1\|1358027_1358570_-	acireductone dioxygenase	NA	NA	NA	NA
WP_047173406.1\|1358566_1359256_-	acireductone synthase	NA	NA	NA	NA
WP_063408646.1\|1359252_1359867_-	methylthioribulose 1-phosphate dehydratase	NA	NA	NA	NA
WP_063408647.1\|1359989_1361150_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_063408648.1\|1361150_1361777_-	ParB-like nuclease domain-containing protein	A0A0F7L444	uncultured_marine_virus	7.9e-54	48.7
WP_088544702.1\|1361761_1362985_-	phosphoadenosine phosphosulfate reductase	A0A220GKF8	Streptococcus_phage	1.0e-60	33.7
WP_088544703.1\|1363071_1363650_-	hypothetical protein	NA	NA	NA	NA
WP_023292714.1\|1363957_1364224_+	DinI family protein	K7PKR6	Enterobacteria_phage	2.1e-40	96.6
WP_145956708.1\|1364281_1365415_-\|tail	tail fiber domain-containing protein	K7PGY2	Enterobacteria_phage	6.4e-78	44.4
WP_063408021.1\|1365471_1366419_-	hypothetical protein	G5DMH8	Enterobacter_virus	7.7e-77	48.1
WP_063408022.1\|1366418_1370255_-\|tail	phage tail protein	Q9MCR7	Enterobacteria_phage	0.0e+00	62.3
WP_001549121.1\|1370308_1370896_-\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	8.0e-48	47.9
WP_058691910.1\|1370895_1371606_-	C40 family peptidase	F1C573	Cronobacter_phage	1.1e-96	69.8
WP_058685175.1\|1371608_1372367_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	2.3e-95	63.6
WP_058680182.1\|1372363_1372702_-\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	7.3e-38	59.8
WP_063408023.1\|1372704_1376169_-\|tail	phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	0.0e+00	89.6
WP_022650855.1\|1376255_1376675_+	hypothetical protein	NA	NA	NA	NA
WP_063408024.1\|1376695_1376974_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	3.4e-41	94.5
WP_045338900.1\|1376982_1377366_-\|tail	phage tail assembly chaperone	K7PKV6	Enterobacterial_phage	7.4e-63	93.7
WP_016240213.1\|1377374_1377818_-	hypothetical protein	K7PHL2	Enterobacterial_phage	3.9e-71	92.4
WP_074166043.1\|1377877_1378225_-	DUF3168 domain-containing protein	K7PM93	Enterobacterial_phage	4.7e-56	95.7
WP_048703098.1\|1378221_1378671_-	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	3.4e-75	99.3
WP_048703101.1\|1378667_1379006_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.5e-40	73.2
WP_048703104.1\|1379015_1379342_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	4.1e-54	94.4
WP_048703108.1\|1379341_1379530_-	hypothetical protein	K7PHI6	Enterobacteria_phage	2.1e-18	75.8
WP_048703110.1\|1379569_1380781_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	6.8e-195	88.2
WP_063408025.1\|1380790_1381639_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	2.4e-138	92.1
WP_063408026.1\|1381652_1382957_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	6.2e-234	93.5
WP_042889604.1\|1382956_1384693_-\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	99.5
WP_032636952.1\|1384692_1385166_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	1.5e-84	96.8
WP_044703918.1\|1385323_1385674_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	3.5e-51	81.0
WP_074166044.1\|1385673_1386264_-	hypothetical protein	S4TR53	Salmonella_phage	3.5e-96	83.1
WP_072205167.1\|1386244_1386763_-	HNH endonuclease	K7PJS8	Enterobacterial_phage	1.7e-46	53.8
WP_063408028.1\|1386806_1388264_-	hypothetical protein	K7PKP3	Enterobacterial_phage	5.0e-277	93.0
WP_045349455.1\|1388403_1388754_+	hypothetical protein	NA	NA	NA	NA
WP_063408029.1\|1388936_1389212_-	hypothetical protein	G8C7W1	Escherichia_phage	3.5e-30	78.0
WP_063408030.1\|1389219_1389846_-	glycoside hydrolase family 19 protein	K7PJS7	Enterobacterial_phage	5.1e-109	94.2
WP_000243812.1\|1389845_1390127_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.7e-19	46.2
WP_001283165.1\|1390113_1390500_-\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	7.3e-58	93.8
WP_058683968.1\|1390644_1391565_+	hypothetical protein	A0A1B5FPA3	Escherichia_phage	5.1e-57	72.3
WP_063153630.1\|1391676_1392513_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	1.4e-122	80.0
WP_050861630.1\|1392540_1393920_-	AAA family ATPase	Q8W640	Enterobacteria_phage	8.4e-173	67.9
WP_060578651.1\|1393916_1394798_-	ATP-binding protein	Q8W641	Enterobacteria_phage	2.0e-82	63.3
WP_088544704.1\|1394813_1395755_-	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	5.1e-81	67.0
WP_072258339.1\|1395833_1396046_-	helix-turn-helix transcriptional regulator	A0A0M4RTV8	Salmonella_phage	4.6e-14	53.0
WP_059585446.1\|1396154_1396820_+	LexA family transcriptional regulator	C6ZR47	Salmonella_phage	2.0e-71	56.1
WP_059585447.1\|1397015_1397231_+	hypothetical protein	NA	NA	NA	NA
WP_000952328.1\|1397636_1397840_+	hypothetical protein	NA	NA	NA	NA
WP_000795057.1\|1397820_1398183_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	9.6e-36	65.5
WP_000176247.1\|1398179_1398401_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	5.5e-18	63.9
WP_063408031.1\|1398397_1398820_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	2.2e-44	63.6
WP_045285664.1\|1398819_1399398_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	7.5e-75	68.2
WP_063408032.1\|1399409_1400153_+	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	2.4e-118	86.2
WP_044158718.1\|1400155_1400527_+	hypothetical protein	NA	NA	NA	NA
WP_013097283.1\|1400510_1400768_+	excisionase family protein	S4TND0	Salmonella_phage	1.8e-36	90.0
WP_063408033.1\|1400812_1402105_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	3.1e-238	94.2
WP_008501015.1\|1403095_1403659_+	alkyl hydroperoxide reductase subunit C	NA	NA	NA	NA
WP_063408651.1\|1403846_1405412_+	alkyl hydroperoxide reductase subunit F	G3MA85	Bacillus_virus	5.4e-43	33.3

DBSCAN-SWA_3

1532599 : 1545571

uncultured_virus(16.67%)

capsid,terminase,transposase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048703281.1\|1532599_1533028_+\|terminase	terminase small subunit	NA	NA	NA	NA
WP_015386429.1\|1534267_1535476_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-47	45.7
WP_088544710.1\|1535501_1536143_+\|terminase	phage terminase large subunit family protein	NA	NA	NA	NA
WP_023310822.1\|1536160_1536703_+	hypothetical protein	NA	NA	NA	NA
WP_023310823.1\|1536702_1538193_+\|portal	phage portal protein	A0A0F7L4Y4	uncultured_marine_virus	9.2e-16	22.7
WP_088544711.1\|1538143_1539838_+\|capsid	major capsid protein	V5YSS9	Pseudomonas_phage	4.0e-15	37.1
WP_085949497.1\|1539834_1540982_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-147	92.6
WP_131631917.1\|1541060_1542752_+	hypothetical protein	V5KSU2	Escherichia_phage	5.9e-19	44.1
WP_088544712.1\|1542748_1545571_+	hypothetical protein	K4F691	Cronobacter_phage	0.0e+00	56.3

DBSCAN-SWA_4

1768630 : 1857652

Enterobacteria_phage(27.45%)

protease,holin,tail,head,terminase,tRNA,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023311004.1\|1768630_1769410_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_023311005.1\|1769413_1770736_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_008499954.1\|1770716_1771421_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_023311006.1\|1771420_1775872_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_063408036.1\|1776049_1777873_+	L,D-transpeptidase	NA	NA	NA	NA
WP_032639289.1\|1778047_1778599_+	YcbK family protein	NA	NA	NA	NA
WP_008499950.1\|1778619_1779267_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_063408035.1\|1779315_1780506_-	aspartate transaminase	NA	NA	NA	NA
WP_029739509.1\|1782399_1783800_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	5.5e-79	36.6
WP_063408034.1\|1783967_1785170_-	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	1.7e-44	31.6
WP_044596886.1\|1785354_1786647_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.1e-238	94.2
WP_013097283.1\|1786691_1786949_-	excisionase family protein	S4TND0	Salmonella_phage	1.8e-36	90.0
WP_058660287.1\|1786932_1787319_-	hypothetical protein	NA	NA	NA	NA
WP_063922403.1\|1787306_1788050_-	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	5.0e-132	94.7
WP_042889584.1\|1788095_1788923_-\|protease	serine protease	Q8W654	Enterobacteria_phage	2.2e-112	85.1
WP_058660285.1\|1788919_1789114_-	hypothetical protein	NA	NA	NA	NA
WP_059509754.1\|1789113_1789521_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	1.9e-24	48.6
WP_044596882.1\|1789710_1790118_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	2.7e-47	87.5
WP_044596881.1\|1790110_1790332_-	hypothetical protein	NA	NA	NA	NA
WP_044596880.1\|1790438_1790825_-	S24 family peptidase	F1C5A0	Cronobacter_phage	3.1e-40	62.4
WP_088544728.1\|1790898_1791192_-	hypothetical protein	NA	NA	NA	NA
WP_023296237.1\|1791363_1792056_-	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	4.3e-85	65.4
WP_048859479.1\|1792209_1792425_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	2.4e-10	50.0
WP_088544729.1\|1792503_1793313_+	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	3.4e-81	63.1
WP_058651199.1\|1793328_1794210_+	ATP-binding protein	Q8W641	Enterobacteria_phage	6.7e-83	64.1
WP_058651200.1\|1794206_1795586_+	AAA family ATPase	Q8W640	Enterobacteria_phage	1.4e-175	68.4
WP_023332570.1\|1795613_1796396_+	antitermination protein	F1C595	Cronobacter_phage	1.8e-108	76.0
WP_048703153.1\|1797034_1797421_+\|holin	phage holin family protein	G8C7V8	Escherichia_phage	3.3e-58	93.8
WP_058651201.1\|1797410_1797689_+\|holin	phage holin family protein	G8C7V9	Escherichia_phage	5.3e-42	97.8
WP_058651202.1\|1797688_1798318_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	3.5e-110	94.3
WP_058651203.1\|1798325_1798601_+	hypothetical protein	G8C7W1	Escherichia_phage	3.3e-28	78.9
WP_058651204.1\|1798551_1798752_+	hypothetical protein	K7PM01	Enterobacterial_phage	1.0e-18	95.5
WP_001274212.1\|1798847_1799156_+	hypothetical protein	Q5QF73	Pseudomonas_virus	5.5e-16	55.1
WP_058651205.1\|1799152_1799419_+	hypothetical protein	NA	NA	NA	NA
WP_088544730.1\|1799589_1800261_+	DUF1983 domain-containing protein	S4TNN5	Salmonella_phage	6.9e-64	53.8
WP_088544731.1\|1800272_1801730_+	glycosyltransferase	A0A220NRM5	Escherichia_phage	3.6e-267	89.9
WP_088544732.1\|1801711_1802302_+	hypothetical protein	K7PGW6	Enterobacterial_phage	1.3e-87	76.0
WP_088544733.1\|1802301_1802652_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	7.1e-52	81.9
WP_045326830.1\|1802809_1803307_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	5.5e-74	84.8
WP_042889604.1\|1803306_1805043_+\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	99.5
WP_088544734.1\|1805042_1806347_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.1e-233	93.5
WP_088544735.1\|1806360_1807209_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.1e-138	92.1
WP_088544736.1\|1807218_1808430_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	5.8e-194	86.0
WP_088544737.1\|1808473_1808800_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	5.4e-54	94.4
WP_088544738.1\|1808809_1809148_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	72.3
WP_016063565.1\|1809144_1809594_+	HK97 gp10 family phage protein	K7PH84	Enterobacterial_phage	4.0e-76	100.0
WP_088544739.1\|1809590_1809938_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	7.2e-57	97.4
WP_000202242.1\|1809992_1810463_+\|tail	phage tail protein	A0A220NRQ0	Escherichia_phage	4.4e-81	98.7
WP_088544740.1\|1810517_1810919_+\|tail	phage tail assembly chaperone	K7PGV0	Enterobacterial_phage	2.3e-67	97.7
WP_088545035.1\|1810942_1811206_+	DUF4035 domain-containing protein	K7P7L5	Enterobacteria_phage	4.6e-40	94.3
WP_088545036.1\|1811280_1811622_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	4.3e-38	74.5
WP_088544741.1\|1811676_1814934_+\|tail	phage tail tape measure protein	K7PH87	Enterobacterial_phage	0.0e+00	81.2
WP_050482969.1\|1815043_1815301_-	hypothetical protein	NA	NA	NA	NA
WP_088544742.1\|1815451_1816045_+	hypothetical protein	S4TSP7	Salmonella_phage	4.2e-97	85.8
WP_063144001.1\|1816044_1816629_+	hypothetical protein	S4TND4	Salmonella_phage	2.5e-94	85.5
WP_088544743.1\|1816635_1817034_+	hypothetical protein	S4TR39	Salmonella_phage	1.7e-62	81.1
WP_088544744.1\|1817033_1819742_+	DUF1983 domain-containing protein	S4TTF5	Salmonella_phage	0.0e+00	74.1
WP_088544745.1\|1819744_1820698_+	hypothetical protein	G5DMH8	Enterobacter_virus	9.5e-91	50.9
WP_088544746.1\|1820745_1821861_+\|tail	tail fiber domain-containing protein	K7P7B1	Enterobacteria_phage	1.0e-80	78.9
WP_088544747.1\|1821918_1822185_-	DinI family protein	K7PKR6	Enterobacteria_phage	1.0e-39	95.5
WP_023311014.1\|1822609_1825222_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	9.1e-19	22.0
WP_032658179.1\|1825318_1826089_-	aliphatic sulfonates ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-29	38.5
WP_023311016.1\|1826085_1826877_-	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
WP_039261601.1\|1826886_1828032_-	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA
WP_063408018.1\|1828028_1828991_-	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_008499940.1\|1828983_1829559_-	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_088544748.1\|1829807_1830818_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_023311020.1\|1830983_1831526_+	cell division protein ZapC	NA	NA	NA	NA
WP_063408017.1\|1831522_1832632_-	YcbX family protein	NA	NA	NA	NA
WP_045619460.1\|1832730_1834839_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_063408016.1\|1834851_1836759_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	9.5e-50	28.3
WP_063408015.1\|1836772_1838026_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_023311025.1\|1838030_1839671_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_045354504.1\|1839667_1840234_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_013097261.1\|1840489_1840657_+	ribosome modulation factor	NA	NA	NA	NA
WP_008499931.1\|1840728_1841247_-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	NA	NA	NA	NA
WP_063408014.1\|1841315_1843076_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_008499929.1\|1843262_1843715_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_023311028.1\|1843778_1844834_-	porin OmpA	NA	NA	NA	NA
WP_032668147.1\|1845188_1845698_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_023311030.1\|1845915_1846542_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_063408013.1\|1846498_1848661_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_023311032.1\|1848680_1849127_-	YccF domain-containing protein	NA	NA	NA	NA
WP_088544749.1\|1849250_1851305_+	DNA helicase IV	A7KV33	Bacillus_phage	1.8e-17	27.9
WP_023311034.1\|1851363_1851822_-	methylglyoxal synthase	NA	NA	NA	NA
WP_063408011.1\|1851902_1852565_-	DUF2057 family protein	NA	NA	NA	NA
WP_063408010.1\|1852738_1853152_+	CoA-binding protein	NA	NA	NA	NA
WP_008499919.1\|1853187_1853505_-	heat shock protein HspQ	NA	NA	NA	NA
WP_045354514.1\|1853565_1854756_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_047742290.1\|1854929_1855487_+	kinase inhibitor	NA	NA	NA	NA
WP_063408009.1\|1855497_1856286_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_063408008.1\|1856297_1856579_+	acylphosphatase	NA	NA	NA	NA
WP_047742287.1\|1856575_1856905_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_023311042.1\|1856992_1857652_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.9e-46	53.9

DBSCAN-SWA_5

2297203 : 2307277

Oenococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063408714.1\|2297203_2298418_+	D-galactonate dehydratase family protein	Q6A202	Oenococcus_phage	8.2e-47	29.4
WP_063408713.1\|2298432_2299452_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	3.9e-18	27.2
WP_088544779.1\|2299525_2300893_+	MHS family MFS transporter	NA	NA	NA	NA
WP_063408711.1\|2301113_2302577_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	2.3e-43	31.0
WP_014883679.1\|2302620_2302824_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	3.4e-14	58.2
WP_045401170.1\|2303111_2303543_+	universal stress protein	A0A1W6JNV4	Morganella_phage	8.2e-18	35.9
WP_063408710.1\|2303576_2304263_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_023311558.1\|2304354_2305101_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_063408709.1\|2305243_2307277_+	peptidyl-dipeptidase Dcp	A0A1V0SIU1	Klosneuvirus	1.7e-17	20.4

DBSCAN-SWA_6

3087835 : 3118814

Vibrio_phage(63.89%)

transposase,tail,integrase,head,plate

attL 3083460:3083474|attR 3094795:3094809

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3083460:3083474	attL	NA	NA	NA	NA
WP_016239587.1\|3087835_3088390_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	3.1e-86	86.3
WP_088544829.1\|3088419_3088815_+\|tail	phage tail protein	A0A0F7LBW5	Escherichia_phage	8.1e-12	37.4
WP_086529775.1\|3088816_3089242_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	4.8e-18	39.2
WP_086529774.1\|3089213_3089807_-\|tail	tail fiber assembly protein	K7PMC4	Enterobacterial_phage	1.7e-50	50.3
WP_088545044.1\|3089806_3090436_-\|integrase	integrase	K7PH60	Enterobacterial_phage	1.8e-58	60.2
WP_088544830.1\|3090570_3091161_-	DUF2313 domain-containing protein	M4M9M8	Vibrio_phage	8.3e-53	48.7
WP_088544831.1\|3091145_3092222_-\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	1.2e-102	53.9
WP_088544832.1\|3092211_3092664_-	phage GP46 family protein	M1PPW1	Vibrio_phage	3.1e-23	42.8
WP_088544833.1\|3092660_3093203_-\|plate	phage baseplate assembly protein	A0A2I7S9F6	Vibrio_phage	1.1e-27	39.7
WP_088544834.1\|3093193_3094285_-\|tail	phage tail protein	M1PVV2	Vibrio_phage	3.7e-91	46.5
WP_088544835.1\|3094284_3095616_-	DNA circularization N-terminal domain-containing protein	A0A2I7S9E8	Vibrio_phage	1.9e-73	36.3
3094795:3094809	attR	NA	NA	NA	NA
WP_071445131.1\|3095615_3097547_-\|tail	phage tail protein	M4MHE6	Vibrio_phage	1.4e-120	46.5
WP_088544836.1\|3097633_3098029_-\|tail	phage tail assembly protein	M1NVT1	Vibrio_phage	2.3e-19	42.9
WP_016239597.1\|3098032_3098389_-\|tail	phage tail tube protein	A0A2I7S9D5	Vibrio_phage	2.0e-22	44.6
WP_088544837.1\|3098398_3099877_-\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	9.7e-151	53.8
WP_016239599.1\|3099876_3100065_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_016239600.1\|3100045_3100669_-	hypothetical protein	M4MHF0	Vibrio_phage	2.2e-35	44.5
WP_057063569.1\|3100665_3101208_-	phage virion morphogenesis protein	M4MB67	Vibrio_phage	1.4e-54	59.2
WP_016239602.1\|3101207_3101648_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	1.4e-33	47.9
WP_088544838.1\|3101647_3102241_-	hypothetical protein	NA	NA	NA	NA
WP_016239604.1\|3102324_3103218_-\|head	Mu-like prophage major head subunit gpT family protein	M4MB71	Vibrio_phage	1.3e-94	56.4
WP_088544839.1\|3103221_3104178_-	peptidase	M1Q578	Vibrio_phage	3.7e-79	50.3
WP_088544840.1\|3104387_3105176_-	hypothetical protein	M4M9M5	Vibrio_phage	4.1e-92	58.0
WP_088544841.1\|3105168_3106737_-	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	8.7e-158	56.2
WP_088544842.1\|3106736_3108320_-	hypothetical protein	M4MHG0	Vibrio_phage	2.3e-198	68.7
WP_023277375.1\|3108316_3108895_-	DUF3486 family protein	M4MCR3	Vibrio_phage	9.6e-46	55.0
WP_088544843.1\|3108884_3109163_-	hypothetical protein	NA	NA	NA	NA
WP_088544844.1\|3109155_3109530_-	hypothetical protein	A0A2D1GNS5	Pseudomonas_phage	7.9e-09	58.2
WP_016239612.1\|3109532_3109820_-	hypothetical protein	M1PPT9	Vibrio_phage	4.6e-25	64.5
WP_016239613.1\|3109832_3110138_-	DUF2730 family protein	M1Q558	Vibrio_phage	5.6e-13	38.3
WP_061549877.1\|3110138_3110345_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_023277379.1\|3110341_3110950_-	hypothetical protein	NA	NA	NA	NA
WP_061549878.1\|3110937_3111345_-	hypothetical protein	NA	NA	NA	NA
WP_023277381.1\|3111337_3111556_-	hypothetical protein	A0A0C4UQR6	Shigella_phage	1.0e-24	69.4
WP_057063581.1\|3111557_3112148_-	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	3.2e-36	46.2
WP_071445100.1\|3112243_3112567_-	hypothetical protein	NA	NA	NA	NA
WP_071445098.1\|3112571_3112979_-	transcriptional regulator	A0A0C4UR27	Shigella_phage	4.4e-37	63.5
WP_088544845.1\|3112975_3113503_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	1.0e-41	50.0
WP_088545045.1\|3113480_3114137_-	hypothetical protein	A0A291AUJ5	Sinorhizobium_phage	4.2e-13	48.9
WP_023277387.1\|3114226_3114754_-	host-nuclease inhibitor Gam family protein	A0A125RNF6	Pseudomonas_phage	3.0e-46	57.9
WP_061068288.1\|3114761_3115013_-	hypothetical protein	NA	NA	NA	NA
WP_057063588.1\|3115318_3115558_-	hypothetical protein	NA	NA	NA	NA
WP_071445087.1\|3115562_3116501_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	5.5e-75	47.5
WP_088545046.1\|3116595_3118578_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A0C4UR24	Shigella_phage	7.5e-191	50.9
WP_023277393.1\|3118577_3118814_-	helix-turn-helix domain-containing protein	A0A2I7S995	Vibrio_phage	3.0e-14	57.6

DBSCAN-SWA_7

3207048 : 3214627

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088544854.1\|3207048_3208152_-	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	1.3e-43	32.1
WP_046092810.1\|3208232_3208640_-	WxcM-like domain-containing protein	NA	NA	NA	NA
WP_063408427.1\|3208636_3209506_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.9e-110	67.4
WP_063408428.1\|3209505_3210591_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.7e-96	52.8
WP_063408429.1\|3210941_3211838_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	6.9e-43	41.9
WP_063408430.1\|3212053_3213049_-	NAD-dependent epimerase/dehydratase family protein	A0A0K1L6Z1	Scale_drop_disease_virus	1.9e-09	27.4
WP_063408431.1\|3213229_3214627_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.7e-19	32.8

DBSCAN-SWA_8

3312952 : 3420055

113

Salmonella_phage(15.69%)

protease,transposase,tail,lysis,holin,head,integrase,terminase,plate,tRNA,capsid,portal

attL 3398519:3398537|attR 3420647:3420665

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045402866.1\|3312952_3313885_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_023312463.1\|3314052_3314448_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_063408471.1\|3314444_3315140_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_063408472.1\|3315269_3316154_+	cytidine deaminase	NA	NA	NA	NA
WP_008500918.1\|3316280_3316997_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_063408478.1\|3317121_3318510_+	glutamine synthetase	NA	NA	NA	NA
WP_008500921.1\|3318559_3319570_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_023312467.1\|3319585_3321106_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	2.6e-10	33.0
WP_023312468.1\|3321185_3322184_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_045402849.1\|3322477_3323500_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_063408473.1\|3323655_3324813_-	DUF418 family protein	NA	NA	NA	NA
WP_063408474.1\|3324832_3325501_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	1.8e-56	56.3
WP_039263162.1\|3325603_3326752_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_063408475.1\|3326890_3327718_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_047174134.1\|3327829_3329800_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	2.8e-12	35.9
WP_023312475.1\|3330024_3331494_-	amino acid permease	NA	NA	NA	NA
WP_023312476.1\|3331674_3332541_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_088544859.1\|3332638_3333685_+	YeiH family protein	NA	NA	NA	NA
WP_063409159.1\|3333748_3334606_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	1.8e-24	32.2
WP_063409158.1\|3334681_3336367_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_023312480.1\|3336383_3337322_-	1-phosphofructokinase	NA	NA	NA	NA
WP_088544860.1\|3337321_3338452_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_063409157.1\|3338813_3339995_+	sugar efflux transporter SetB	NA	NA	NA	NA
WP_045908692.1\|3339991_3340246_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_088544861.1\|3340410_3340983_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_063409156.1\|3341102_3342293_-	mannonate dehydratase	NA	NA	NA	NA
WP_063409155.1\|3342498_3343965_+	fructuronate reductase	E5EQS6	Micromonas_sp._RCC1109_virus	1.5e-39	30.0
WP_063409154.1\|3344089_3345076_+	GTP-binding protein	NA	NA	NA	NA
WP_169815238.1\|3345109_3345811_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_008500946.1\|3346238_3346808_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	3.6e-13	38.9
WP_045354243.1\|3346935_3348492_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_063409152.1\|3348566_3350372_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_063409151.1\|3350381_3351476_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_023312492.1\|3351475_3352501_+	ABC transporter permease	NA	NA	NA	NA
WP_063409150.1\|3352502_3354092_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	1.0e-17	32.8
WP_023312494.1\|3354095_3354440_-	hypothetical protein	NA	NA	NA	NA
WP_008500953.1\|3354719_3355916_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	1.7e-20	22.6
WP_045354252.1\|3355931_3356639_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_063409149.1\|3356791_3358552_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	2.9e-101	42.4
WP_008500956.1\|3358677_3358962_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_021241524.1\|3359012_3360020_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	7.7e-83	48.9
WP_008500958.1\|3360154_3360382_+	YejL family protein	NA	NA	NA	NA
WP_023312498.1\|3360401_3362162_+	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_049015053.1\|3362416_3362737_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.8e-41	73.6
WP_023325685.1\|3362736_3362976_-	hypothetical protein	K7P7N3	Enterobacteria_phage	5.5e-40	97.4
WP_088544862.1\|3363075_3363342_+	DinI family protein	K7PKR6	Enterobacteria_phage	1.4e-39	94.3
WP_088544863.1\|3363469_3364060_-\|tail	tail fiber assembly protein	K7PMC4	Enterobacterial_phage	6.3e-61	54.5
WP_088544864.1\|3364059_3364815_-\|tail	phage tail protein	K7PH60	Enterobacterial_phage	1.8e-39	46.3
WP_000051911.1\|3364866_3365460_-	YmfQ family protein	NA	NA	NA	NA
WP_001116110.1\|3365456_3366599_-\|plate	baseplate J/gp47 family protein	A0A0A8WEY6	Clostridium_phage	6.2e-12	34.8
WP_088544865.1\|3366600_3367038_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	3.6e-13	45.8
WP_023568807.1\|3367034_3367619_-\|plate	phage baseplate assembly protein	A0A077KAY0	Edwardsiella_phage	6.3e-05	30.8
WP_088544866.1\|3367615_3368701_-\|tail	phage tail protein	M1PVV2	Vibrio_phage	8.9e-45	31.5
WP_088544867.1\|3368697_3370101_-	DNA circularization protein	NA	NA	NA	NA
WP_088544868.1\|3370164_3370413_-	hypothetical protein	NA	NA	NA	NA
WP_088544869.1\|3370444_3372373_-	hypothetical protein	A0A193GYI3	Enterobacter_phage	5.1e-19	30.7
WP_023294065.1\|3372514_3372793_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000896638.1\|3372794_3373166_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_088544870.1\|3373169_3374672_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	2.1e-100	41.8
WP_049015412.1\|3374668_3374866_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_088544871.1\|3374869_3375415_-	ATP-binding protein	NA	NA	NA	NA
WP_000537794.1\|3375411_3375771_-	hypothetical protein	NA	NA	NA	NA
WP_047744272.1\|3375775_3376186_-	hypothetical protein	NA	NA	NA	NA
WP_088544872.1\|3376157_3377207_-\|capsid	major capsid protein	V5Q8G6	Xylella_phage	1.4e-50	33.4
WP_023294067.1\|3377304_3377709_-\|head	head decoration protein	NA	NA	NA	NA
WP_088544873.1\|3377708_3378299_-	hypothetical protein	NA	NA	NA	NA
WP_001052909.1\|3378300_3379167_-	S49 family peptidase	A0A2D1GN02	Marinobacter_phage	4.8e-49	37.9
WP_001045359.1\|3379163_3380801_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	3.3e-91	35.2
WP_000483309.1\|3380800_3381064_-	hypothetical protein	NA	NA	NA	NA
WP_069598582.1\|3381072_3383196_-\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	2.3e-97	35.9
WP_000210383.1\|3383137_3383707_-	hypothetical protein	NA	NA	NA	NA
WP_088544874.1\|3383945_3384587_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	8.2e-06	32.1
WP_001165319.1\|3384663_3385068_-	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_016236999.1\|3385100_3385571_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	3.9e-45	68.3
WP_088545047.1\|3385567_3386011_-	lysozyme	A0A0M4R365	Salmonella_phage	5.8e-51	70.5
WP_023311421.1\|3385994_3386336_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.1e-28	54.2
WP_088544875.1\|3386404_3387457_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.0e-174	81.7
WP_024189854.1\|3387675_3388575_-\|protease	serine protease	NA	NA	NA	NA
WP_001515597.1\|3388589_3388799_-	hypothetical protein	NA	NA	NA	NA
WP_063928731.1\|3389227_3389920_-	antitermination protein	NA	NA	NA	NA
WP_088544876.1\|3389941_3391003_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.0e-110	55.4
WP_088544877.1\|3390999_3391692_-	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	6.9e-59	54.6
WP_088544878.1\|3391706_3393644_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	7.3e-199	53.7
WP_088544879.1\|3393636_3394971_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.1e-116	50.3
WP_088544880.1\|3394967_3395825_-	conserved phage C-terminal domain-containing protein	A0A1C9IHW0	Salmonella_phage	5.1e-43	64.0
WP_088544881.1\|3395814_3395994_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.5e-13	67.3
WP_181008669.1\|3396166_3396712_-	DNA-binding protein	A0A1C9II13	Salmonella_phage	4.6e-66	67.2
WP_088544882.1\|3396794_3397229_+	hypothetical protein	NA	NA	NA	NA
WP_063927642.1\|3397233_3397503_-	hypothetical protein	NA	NA	NA	NA
WP_063927643.1\|3397531_3397729_-	hypothetical protein	K7PHB1	Enterobacterial_phage	1.4e-20	73.8
WP_074172948.1\|3397828_3398485_+	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	2.2e-102	82.1
3398519:3398537	attL	NA	NA	NA	NA
WP_080470104.1\|3398629_3399046_+	ClpX C4-type zinc finger protein	NA	NA	NA	NA
WP_016247397.1\|3400082_3400454_+	hypothetical protein	Q8HAA1	Salmonella_phage	2.2e-56	90.2
WP_088544883.1\|3400507_3401338_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	3.9e-117	77.9
WP_088544884.1\|3402195_3402699_+	hypothetical protein	NA	NA	NA	NA
WP_016247402.1\|3402695_3402917_+	TraR/DksA family transcriptional regulator	A0A0P0ZCX5	Stx2-converting_phage	8.2e-14	56.5
WP_088544885.1\|3402923_3403136_+	hypothetical protein	NA	NA	NA	NA
WP_088544886.1\|3403132_3403666_+	ead/Ea22-like family protein	A0A1V0E5L5	Salmonella_phage	4.1e-19	61.1
WP_023294090.1\|3403665_3403887_+	hypothetical protein	K7PKM4	Enterobacterial_phage	1.0e-11	58.1
WP_016240149.1\|3403867_3404440_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.1e-93	83.0
WP_001515618.1\|3404484_3404694_+	hypothetical protein	NA	NA	NA	NA
WP_088544887.1\|3404696_3405884_+\|integrase	tyrosine-type recombinase/integrase	A0A2D1GN00	Marinobacter_phage	1.9e-32	30.0
WP_063409148.1\|3406101_3407289_-	MFS transporter	NA	NA	NA	NA
WP_008500962.1\|3407426_3407687_-	DUF2534 family protein	NA	NA	NA	NA
WP_028013891.1\|3407896_3408400_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_063409147.1\|3408480_3410130_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_047744219.1\|3410317_3411607_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.0e-79	48.6
WP_047647232.1\|3411569_3413006_-	magnesium transporter	NA	NA	NA	NA
WP_063409160.1\|3413154_3414798_-	multidrug ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	3.2e-09	22.0
WP_023312505.1\|3414867_3415524_-	DNA oxidative demethylase AlkB	A0A2K9L3R7	Tupanvirus	2.9e-06	32.7
WP_063409145.1\|3415523_3416582_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	3.8e-16	50.0
WP_023312507.1\|3416654_3417710_-	FAD:protein FMN transferase ApbE	NA	NA	NA	NA
WP_088544805.1\|3418849_3420055_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.7e-79	77.7
3420647:3420665	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3733156 : 3852185

139

Salmonella_phage(54.44%)

tail,lysis,integrase,head,terminase,plate,tRNA,capsid,portal

attL 3823149:3823164|attR 3853470:3853485

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063408957.1\|3733156_3733894_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_023308854.1\|3734026_3735355_+	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.8e-47	33.2
WP_029741127.1\|3735405_3735789_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	2.8e-33	71.8
WP_023308856.1\|3736103_3736793_+	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	6.0e-55	48.8
WP_029741125.1\|3736841_3737972_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_023308858.1\|3738176_3738596_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	3.1e-14	39.5
WP_045355292.1\|3738665_3739364_+	DTW domain-containing protein	NA	NA	NA	NA
WP_063408958.1\|3739399_3742063_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_023308861.1\|3742173_3743529_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_045399407.1\|3743574_3743898_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_045355288.1\|3743894_3745190_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.2
WP_023308864.1\|3750804_3753378_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	1.2e-127	35.3
WP_059445711.1\|3753507_3754239_-	polyphenol oxidase	NA	NA	NA	NA
WP_023308866.1\|3754235_3755216_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_023308867.1\|3755347_3756085_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_003863162.1\|3756353_3756695_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100249759.1\|3756806_3756854_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_023308868.1\|3756961_3758122_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_063408305.1\|3758118_3758991_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_023308870.1\|3759051_3760173_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_023308871.1\|3760183_3761254_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.2e-89	51.5
WP_023308872.1\|3761468_3761843_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_171843737.1\|3761995_3762532_+	YfiR family protein	NA	NA	NA	NA
WP_063408306.1\|3762524_3763745_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.4e-06	36.6
WP_029741023.1\|3763757_3764243_+	OmpA family protein	NA	NA	NA	NA
WP_063408307.1\|3764245_3765616_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_063408308.1\|3765640_3766060_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_088544915.1\|3766287_3767337_-\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	8.6e-186	88.3
WP_088544916.1\|3767361_3767700_-	DUF2511 domain-containing protein	A0A0M3ULF8	Salmonella_phage	2.0e-43	74.8
WP_088544917.1\|3767708_3768551_-	phage repressor protein CI	A0A0M4RE65	Salmonella_phage	1.8e-117	76.6
WP_088544918.1\|3768664_3769036_+	Cro/Cl family transcriptional regulator	A0A0M4R4X7	Salmonella_phage	8.8e-61	97.6
WP_023333087.1\|3769068_3769578_+	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	3.4e-87	96.4
WP_088545049.1\|3769585_3769786_+	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	2.1e-29	92.4
WP_023209089.1\|3769749_3770088_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	8.9e-52	91.1
WP_088544919.1\|3770155_3770383_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	2.9e-30	96.0
WP_088544920.1\|3770382_3770604_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	1.8e-32	95.8
WP_088544921.1\|3770604_3770877_+	DUF5405 family protein	A0A218M4I8	Erwinia_phage	6.7e-34	73.9
WP_088544922.1\|3770873_3771776_+	DNA cytosine methyltransferase	D2XJE8	Escherichia_phage	2.4e-88	59.3
WP_088544923.1\|3771769_3773989_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	96.5
WP_000232650.1\|3774109_3774292_+	hypothetical protein	A0A0M5M1G5	Salmonella_phage	4.1e-27	100.0
WP_001222154.1\|3774295_3774529_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	8.0e-36	98.7
WP_088544925.1\|3775006_3776053_-\|portal	phage portal protein	A0A2I8TV74	Erwinia_phage	1.2e-190	95.1
WP_088544926.1\|3776054_3777824_-\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	0.0e+00	99.3
WP_088544927.1\|3777989_3778844_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	1.4e-154	96.5
WP_044068248.1\|3778918_3779986_+\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	3.8e-197	99.2
WP_088544928.1\|3779990_3780740_+\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	3.8e-119	92.4
WP_000214252.1\|3780833_3781343_+\|head	head completion/stabilization protein	A0A218M4L7	Erwinia_phage	4.3e-90	98.2
WP_088544929.1\|3781342_3781546_+\|tail	tail protein X	A0A218M4L8	Erwinia_phage	7.5e-30	95.5
WP_001437784.1\|3781536_3781758_+	primosomal protein	A0A218M4L5	Erwinia_phage	8.4e-35	98.6
WP_088544930.1\|3781741_3782254_+	lysozyme	A0A218M4K3	Erwinia_phage	7.8e-92	97.6
WP_088544931.1\|3782250_3782682_+	lysA protein	A0A218M4L6	Erwinia_phage	2.0e-64	83.2
WP_088544932.1\|3782681_3783092_+\|lysis	LysB family phage lysis regulatory protein	A0A218M4K2	Erwinia_phage	3.0e-62	91.2
WP_001384078.1\|3783063_3783237_+	hypothetical protein	O80311	Escherichia_phage	6.2e-25	98.2
WP_088544933.1\|3783199_3783667_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	1.2e-83	99.4
WP_088544934.1\|3783659_3784109_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.1e-70	97.3
WP_088544935.1\|3784177_3784819_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	3.6e-102	90.0
WP_046092420.1\|3784815_3785163_+	GPW/gp25 family protein	A0A218M4K8	Erwinia_phage	5.5e-57	99.1
WP_088544936.1\|3785169_3786078_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	8.5e-158	98.3
WP_046092422.1\|3786070_3786679_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	1.9e-113	98.0
WP_088544937.1\|3786675_3788067_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	3.1e-106	48.2
WP_088544938.1\|3788066_3788663_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	1.2e-91	84.8
WP_088544939.1\|3788793_3789972_+\|tail	phage tail sheath protein	Q37844	Escherichia_phage	2.8e-217	97.4
WP_001207675.1\|3789987_3790506_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
WP_001029731.1\|3790569_3790905_+\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	5.2e-52	98.2
WP_071687585.1\|3790901_3791057_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	9.7e-22	96.1
WP_088544940.1\|3791049_3793491_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	90.9
WP_000978868.1\|3793502_3793988_+\|tail	phage tail protein	S4TUC3	Salmonella_phage	1.5e-81	95.0
WP_088544941.1\|3793984_3795154_+	phage late control D family protein	A0A218M4J7	Erwinia_phage	1.7e-206	98.2
WP_072056585.1\|3795228_3795447_+	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	5.2e-37	94.4
WP_002914145.1\|3795591_3795939_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_063408339.1\|3795982_3796750_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_029741020.1\|3796781_3797321_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003863133.1\|3797336_3797585_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_063408340.1\|3797701_3799063_-	signal recognition particle protein	NA	NA	NA	NA
WP_014884879.1\|3799229_3800021_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_025759264.1\|3800040_3801327_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_023308880.1\|3801379_3801973_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_008502500.1\|3802095_3802974_+	NAD(+) kinase	NA	NA	NA	NA
WP_063408342.1\|3803059_3804721_+	DNA repair protein RecN	NA	NA	NA	NA
WP_023308883.1\|3804859_3805198_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_063408343.1\|3805301_3805589_-	RnfH family protein	NA	NA	NA	NA
WP_023308885.1\|3805578_3806055_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_008502505.1\|3806172_3806655_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_052946276.1\|3807204_3807588_+	hypothetical protein	NA	NA	NA	NA
WP_031618119.1\|3807627_3807846_-	ogr/Delta-like zinc finger family protein	E5G6Q4	Salmonella_phage	9.8e-28	75.0
WP_088544942.1\|3807913_3809014_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	2.2e-184	93.4
WP_013098780.1\|3809010_3809496_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-72	94.4
WP_088544943.1\|3809492_3812270_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	7.7e-117	42.3
WP_000763315.1\|3812262_3812382_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_001280965.1\|3812396_3812699_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
WP_088544944.1\|3812753_3813269_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.9e-90	97.7
WP_088544945.1\|3813278_3814451_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.0e-212	94.1
WP_088545051.1\|3814584_3815184_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	2.6e-62	59.4
WP_060633245.1\|3816571_3817177_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	8.9e-111	93.5
WP_088544946.1\|3817169_3818078_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.6e-151	95.7
WP_023223444.1\|3818064_3818424_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	1.4e-55	92.4
WP_088544947.1\|3818420_3818999_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	7.4e-107	97.4
WP_088544948.1\|3819067_3819514_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	5.4e-65	88.4
WP_088544949.1\|3819506_3819938_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.9e-73	95.1
WP_161496001.1\|3820033_3820462_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	4.3e-67	97.2
WP_088544951.1\|3820458_3820836_-	peptidase	A0A1S6KZZ2	Salmonella_phage	5.4e-58	94.4
WP_001528581.1\|3820840_3821350_-	lysozyme	A0A1S6KZY9	Salmonella_phage	8.3e-94	98.2
WP_000171565.1\|3821330_3821546_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_000868184.1\|3821549_3821753_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_088544952.1\|3821752_3822217_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.0e-83	96.8
WP_088544953.1\|3822310_3822961_-	hypothetical protein	E5G6M7	Salmonella_phage	8.4e-115	99.5
WP_013098795.1\|3822964_3824026_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	7.8e-195	99.2
3823149:3823164	attL	NA	NA	NA	NA
WP_057057200.1\|3824042_3824876_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	2.5e-127	97.1
WP_001528644.1\|3825018_3826785_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	95.2
WP_088544954.1\|3826784_3827831_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-184	91.3
WP_087051166.1\|3827863_3828604_-	HIRAN domain-containing protein	NA	NA	NA	NA
WP_087051165.1\|3828596_3829517_-	hypothetical protein	NA	NA	NA	NA
WP_088544955.1\|3829891_3830125_-	DinI family protein	A0A1S6L014	Salmonella_phage	6.4e-33	90.9
WP_001154443.1\|3830136_3830325_-	hypothetical protein	A0A1S6L006	Salmonella_phage	6.1e-26	98.4
WP_088544956.1\|3830487_3832896_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	96.9
WP_024552872.1\|3832886_3833747_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.2e-131	81.1
WP_024552873.1\|3833743_3833971_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	7.3e-34	90.7
WP_001744223.1\|3833970_3834204_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	5.4e-24	80.5
WP_048971665.1\|3834271_3834613_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	9.0e-52	87.6
WP_032442472.1\|3834576_3834777_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	6.7e-31	92.4
WP_033146280.1\|3834784_3835294_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	2.3e-83	92.3
WP_033146281.1\|3835326_3835575_-	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	6.8e-25	70.7
WP_033146282.1\|3835691_3836324_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	9.1e-66	58.6
WP_088544957.1\|3836327_3837353_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.2e-195	95.3
WP_042193617.1\|3837680_3838910_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	4.6e-215	90.9
WP_042193563.1\|3839010_3839481_+	hypothetical protein	NA	NA	NA	NA
WP_057057019.1\|3839497_3840652_+	hypothetical protein	NA	NA	NA	NA
WP_042193569.1\|3840644_3842519_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_042193573.1\|3842511_3843009_+	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA
WP_126546651.1\|3843159_3843576_+	hypothetical protein	NA	NA	NA	NA
WP_000516220.1\|3844007_3844391_+	hypothetical protein	NA	NA	NA	NA
WP_088544958.1\|3844399_3845581_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_023339480.1\|3846112_3846499_+	hypothetical protein	NA	NA	NA	NA
WP_042193583.1\|3846518_3846833_+	hypothetical protein	NA	NA	NA	NA
WP_042193586.1\|3846885_3847311_-	hypothetical protein	NA	NA	NA	NA
WP_042193589.1\|3847407_3847794_-	hypothetical protein	NA	NA	NA	NA
WP_042193592.1\|3847808_3849683_-	DNA-binding protein	NA	NA	NA	NA
WP_042193595.1\|3849679_3850990_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_042193598.1\|3850982_3852185_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
3853470:3853485	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4162055 : 4225588

uncultured_virus(22.22%)

integrase,tRNA,transposase

attL 4206632:4206691|attR 4224307:4225623

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048224819.1\|4162055_4162775_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_168964397.1\|4162919_4163972_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_023309138.1\|4163998_4164271_+	oxidative damage protection protein	NA	NA	NA	NA
WP_045355622.1\|4164327_4165404_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_045403930.1\|4165676_4166933_+	nucleoside permease	NA	NA	NA	NA
WP_063408127.1\|4167012_4167816_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
WP_063408126.1\|4167793_4168333_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_063408125.1\|4168329_4169853_-	citrate lyase subunit alpha	NA	NA	NA	NA
WP_023309143.1\|4169863_4170739_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
WP_008499773.1\|4170735_4171029_-	citrate lyase acyl carrier protein	NA	NA	NA	NA
WP_063408124.1\|4171045_4172068_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
WP_021242089.1\|4172078_4172942_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_029740738.1\|4172959_4174321_-	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA
WP_088544973.1\|4174666_4176292_+	sensor histidine kinase	NA	NA	NA	NA
WP_045403943.1\|4176281_4176974_+	response regulator	NA	NA	NA	NA
WP_063409802.1\|4177028_4179164_-	ornithine decarboxylase	NA	NA	NA	NA
WP_063409803.1\|4179345_4180059_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001567368.1\|4180617_4182021_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_001567369.1\|4182049_4182682_-	hypothetical protein	NA	NA	NA	NA
WP_057060268.1\|4182756_4183743_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_088544974.1\|4183783_4185322_-	TraI domain-containing protein	NA	NA	NA	NA
WP_050594920.1\|4185612_4186080_+	hypothetical protein	NA	NA	NA	NA
WP_032676639.1\|4186256_4187273_+	hypothetical protein	NA	NA	NA	NA
WP_032676638.1\|4187360_4188578_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_032676637.1\|4188635_4189181_+	hypothetical protein	NA	NA	NA	NA
WP_032676635.1\|4189216_4189864_+	hypothetical protein	NA	NA	NA	NA
WP_032676634.1\|4189860_4190139_+	hypothetical protein	NA	NA	NA	NA
WP_000793034.1\|4190222_4190906_-	hypothetical protein	A0A2K9V411	Faecalibacterium_phage	9.6e-29	37.6
WP_000493293.1\|4191036_4191990_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_032676633.1\|4192081_4193074_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	5.3e-52	39.6
WP_032676632.1\|4193169_4193793_-	hypothetical protein	NA	NA	NA	NA
WP_032676630.1\|4193874_4194183_-	hypothetical protein	NA	NA	NA	NA
WP_001003975.1\|4194337_4194703_-	hypothetical protein	NA	NA	NA	NA
WP_032676627.1\|4194791_4195208_-	hypothetical protein	NA	NA	NA	NA
WP_032676625.1\|4195957_4196323_+	hypothetical protein	NA	NA	NA	NA
WP_032676624.1\|4196366_4197104_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_032676623.1\|4197117_4197807_+	hypothetical protein	NA	NA	NA	NA
WP_032676621.1\|4197947_4198319_+	hypothetical protein	NA	NA	NA	NA
WP_032676620.1\|4198382_4199303_+	hypothetical protein	NA	NA	NA	NA
WP_032676619.1\|4199356_4200115_+	hypothetical protein	NA	NA	NA	NA
WP_032676618.1\|4200343_4201777_-	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	1.1e-37	75.3
WP_032676617.1\|4201816_4202770_-	chromate resistance protein	NA	NA	NA	NA
WP_032676616.1\|4203043_4204342_+	MFS transporter	NA	NA	NA	NA
WP_032676615.1\|4204447_4204717_+	nickel-sensing transcriptional repressor NirB	NA	NA	NA	NA
WP_032676613.1\|4204729_4205872_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_032676612.1\|4206043_4206472_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA
4206632:4206691	attL	NA	NA	NA	NA
WP_015386429.1\|4206704_4207913_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-47	45.7
WP_032676611.1\|4208088_4208979_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_123923334.1\|4209068_4209362_+	hypothetical protein	NA	NA	NA	NA
WP_032676608.1\|4209945_4211133_-	FRG domain-containing protein	NA	NA	NA	NA
WP_032676607.1\|4211319_4211754_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	4.7e-29	51.2
WP_032676606.1\|4211753_4213028_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.1e-153	63.5
WP_032676605.1\|4213055_4213847_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.7e-49	81.7
WP_032676604.1\|4213846_4214665_-	hypothetical protein	NA	NA	NA	NA
WP_123923331.1\|4214747_4215035_-	hypothetical protein	NA	NA	NA	NA
WP_032676602.1\|4215563_4218683_-	hypothetical protein	NA	NA	NA	NA
WP_032676600.1\|4219130_4220960_+	hypothetical protein	NA	NA	NA	NA
WP_032676599.1\|4221130_4223818_-	hypothetical protein	A0A1B1IUG5	uncultured_Mediterranean_phage	3.1e-06	19.2
WP_015386429.1\|4224379_4225588_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-47	45.7
4224307:4225623	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4302550 : 4389007

Escherichia_phage(11.54%)

integrase,transposase

attL 4312973:4312985|attR 4396265:4396280

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011787830.1\|4302550_4305631_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_011918375.1\|4305654_4305966_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011787805.1\|4305965_4306226_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011787804.1\|4306395_4307016_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.7e-24	37.1
WP_011787803.1\|4307133_4307466_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_001067855.1\|4308294_4308999_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000155092.1\|4309082_4309967_-	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000052512.1\|4310022_4311498_-	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_088544805.1\|4312181_4313387_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.7e-79	77.7
4312973:4312985	attL	NA	NA	NA	NA
WP_001389365.1\|4314127_4314892_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
4312973:4312985	attL	NA	NA	NA	NA
WP_000259032.1\|4315066_4315906_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|4315899_4316247_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000186237.1\|4316403_4317036_-	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_000381802.1\|4317118_4317652_-	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
WP_000845039.1\|4317797_4318811_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000019304.1\|4319413_4319983_-	trimethoprim-resistant dihydrofolate reductase DfrA19	NA	NA	NA	NA
4319382:4319394	attR	NA	NA	NA	NA
WP_002008781.1\|4319982_4320483_-	hypothetical protein	A0A2L0UZT6	Agrobacterium_phage	2.0e-07	28.6
4319382:4319394	attR	NA	NA	NA	NA
WP_000050481.1\|4320748_4322290_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|4322694_4323534_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_012579084.1\|4323733_4324390_-	quinolone resistance pentapeptide repeat protein QnrA1	NA	NA	NA	NA
WP_000050481.1\|4324722_4326264_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|4326668_4327508_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|4327501_4327849_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000800689.1\|4328038_4328671_-	type B-2 chloramphenicol O-acetyltransferase CatB11	M1HKK6	Paramecium_bursaria_Chlorella_virus	7.1e-26	43.0
WP_001256774.1\|4328795_4330055_-	CmlA family chloramphenicol efflux MFS transporter	S4TR35	Salmonella_phage	4.8e-26	31.7
WP_042946310.1\|4330855_4332205_+	group II intron reverse transcriptase/maturase	A0A0N7AE80	Bacillus_phage	2.6e-17	26.0
WP_001261740.1\|4332293_4333085_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001931474.1\|4333202_4334069_-	PSE family carbenicillin-hydrolyzing class A beta-lactamase CARB-2	A0A077SL40	Escherichia_phage	4.8e-57	44.1
WP_000845039.1\|4334274_4335288_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001162012.1\|4335593_4336151_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_001138073.1\|4336153_4339126_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_000988732.1\|4342242_4342968_-	hypothetical protein	NA	NA	NA	NA
WP_000868821.1\|4343081_4343456_-	hypothetical protein	NA	NA	NA	NA
WP_000338626.1\|4343576_4343693_-	hypothetical protein	NA	NA	NA	NA
WP_000714162.1\|4343702_4343942_-	permease	NA	NA	NA	NA
WP_000268337.1\|4344014_4344293_-	hypothetical protein	NA	NA	NA	NA
WP_000122923.1\|4344279_4346007_-	toprim domain-containing protein	A0A0H5AWB1	Pseudomonas_phage	9.3e-20	39.8
WP_001077335.1\|4346184_4346571_-	hypothetical protein	NA	NA	NA	NA
WP_000595210.1\|4347028_4347880_-	hypothetical protein	A0A219UQS0	Bacillus_phage	3.6e-09	29.4
WP_000064432.1\|4347954_4348512_-	hypothetical protein	NA	NA	NA	NA
WP_000260293.1\|4348585_4348804_-	hypothetical protein	NA	NA	NA	NA
WP_000184110.1\|4348817_4349087_-	hypothetical protein	NA	NA	NA	NA
WP_000071870.1\|4349079_4349685_-	5'-deoxynucleotidase	NA	NA	NA	NA
WP_000050848.1\|4349756_4349960_-	hypothetical protein	NA	NA	NA	NA
WP_000140246.1\|4351823_4352153_-	hypothetical protein	NA	NA	NA	NA
WP_021242119.1\|4352357_4355633_-	hypothetical protein	NA	NA	NA	NA
WP_017384073.1\|4356491_4356788_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017384071.1\|4358135_4358411_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_017384070.1\|4358445_4359555_+	S-(hydroxymethyl)glutathione dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	2.2e-30	28.7
WP_012561111.1\|4359598_4359997_+	VOC family protein	NA	NA	NA	NA
WP_012561110.1\|4360061_4360898_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_085949497.1\|4361094_4362242_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-147	92.6
WP_007896426.1\|4362595_4363921_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	6.5e-114	48.1
WP_016151347.1\|4365164_4365686_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_023304425.1\|4365682_4366636_+	fec operon regulator FecR	NA	NA	NA	NA
WP_022652364.1\|4366722_4369047_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_007898890.1\|4369091_4369994_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004118243.1\|4369990_4370989_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004118246.1\|4370985_4371942_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	5.3e-17	26.1
WP_004152282.1\|4371942_4372710_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_007898888.1\|4372808_4373102_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.7e-49	95.9
WP_007898884.1\|4373432_4373711_-	EAL domain-containing protein	NA	NA	NA	NA
WP_007851507.1\|4374057_4375140_+	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	6.5e-189	98.1
WP_088544979.1\|4375261_4378336_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
WP_003846917.1\|4378387_4379641_+	lactose permease	NA	NA	NA	NA
WP_017384068.1\|4380722_4381856_-	glutathione-independent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_077946840.1\|4382207_4383062_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.0e-81	56.2
WP_000537152.1\|4383058_4383343_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_017384060.1\|4383469_4383898_-	hypothetical protein	NA	NA	NA	NA
WP_017384059.1\|4383901_4386019_-	hypothetical protein	NA	NA	NA	NA
WP_007897920.1\|4386006_4387773_-	hypothetical protein	NA	NA	NA	NA
WP_007897923.1\|4387759_4389007_-\|integrase	site-specific integrase	NA	NA	NA	NA
4396265:4396280	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4439603 : 4535562

102

Erwinia_phage(33.33%)

transposase,tail,lysis,integrase,holin,plate,tRNA

attL 4445349:4445369|attR 4519396:4519416

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032650276.1\|4439603_4440617_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.1e-108	58.6
WP_001144069.1\|4440853_4441069_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_063409302.1\|4441184_4442930_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.2e-76	39.0
WP_023309228.1\|4443083_4444931_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
4445349:4445369	attL	NA	NA	NA	NA
WP_024906471.1\|4445462_4445969_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_045268641.1\|4446331_4446673_-	toxin	NA	NA	NA	NA
WP_045268640.1\|4446693_4447011_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_007893437.1\|4447030_4447252_-	DUF987 domain-containing protein	NA	NA	NA	NA
WP_045268639.1\|4447260_4447737_-	RadC family protein	NA	NA	NA	NA
WP_045268638.1\|4447752_4448211_-	antirestriction protein	A9J566	Pseudomonas_phage	2.2e-13	31.4
WP_045268637.1\|4448885_4450544_+	AAA family ATPase	NA	NA	NA	NA
WP_045268636.1\|4450536_4451691_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_058673476.1\|4451909_4452377_-	hypothetical protein	NA	NA	NA	NA
WP_058673475.1\|4452399_4452843_-	hypothetical protein	NA	NA	NA	NA
WP_001115854.1\|4452842_4453079_-	hypothetical protein	NA	NA	NA	NA
WP_021574424.1\|4454033_4454855_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.7e-46	39.1
WP_001548935.1\|4454946_4455810_-	GTPase family protein	NA	NA	NA	NA
WP_045270034.1\|4456772_4457408_-	type 3 fimbria minor subunit MrkF	NA	NA	NA	NA
WP_045270033.1\|4457421_4458417_-	type 3 fimbria adhesin subunit MrkD	NA	NA	NA	NA
WP_045270032.1\|4458407_4460894_-	type 3 fimbria usher protein MrkC	NA	NA	NA	NA
WP_000820818.1\|4460905_4461607_-	type 3 fimbria chaperone MrkB	NA	NA	NA	NA
WP_002916128.1\|4461702_4462311_-	type 3 fimbria major subunit MrkA	NA	NA	NA	NA
WP_086550188.1\|4462632_4463613_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	98.8
WP_001581469.1\|4464016_4464712_-	B3/4 domain-containing protein	NA	NA	NA	NA
WP_001581470.1\|4464755_4465358_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019077728.1\|4465420_4465882_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045269866.1\|4466150_4467860_+	type I restriction-modification system subunit M	A0A2I6PG28	Plesiomonas_phage	5.4e-12	25.6
WP_045269867.1\|4467849_4469262_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_045269868.1\|4469261_4472393_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	7.0e-74	27.6
WP_006809979.1\|4472427_4472922_+	hypothetical protein	NA	NA	NA	NA
WP_023294607.1\|4472994_4473621_-	inovirus Gp2 family protein	NA	NA	NA	NA
WP_000481743.1\|4473746_4475171_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_024209758.1\|4475286_4475514_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000459847.1\|4475858_4476299_-	hypothetical protein	NA	NA	NA	NA
WP_001225594.1\|4476427_4476583_+	hypothetical protein	NA	NA	NA	NA
WP_000049639.1\|4476579_4477194_-	Fic family protein	NA	NA	NA	NA
WP_045269869.1\|4477198_4478515_-\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	1.6e-35	30.6
WP_063408921.1\|4479378_4479609_-	hypothetical protein	I6S1K6	Salmonella_phage	8.8e-19	59.2
WP_045404077.1\|4480052_4480325_-	hypothetical protein	NA	NA	NA	NA
WP_063408919.1\|4480308_4480857_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_063408917.1\|4481657_4481876_+	hypothetical protein	NA	NA	NA	NA
WP_029741756.1\|4482002_4482203_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	6.3e-21	79.6
WP_063408916.1\|4482270_4483425_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	6.6e-131	62.2
WP_023309232.1\|4483421_4483886_-\|tail	phage tail protein	O80317	Escherichia_phage	6.9e-55	66.7
WP_063408915.1\|4483897_4486177_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	4.4e-134	40.7
WP_023616176.1\|4486169_4486289_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	9.7e-14	89.7
WP_023309234.1\|4486321_4486630_-\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	3.4e-26	65.3
WP_023309235.1\|4486686_4487205_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	7.7e-79	80.8
WP_063408914.1\|4487216_4488404_-\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	3.6e-188	83.3
WP_063408913.1\|4488462_4489056_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	3.0e-79	74.5
WP_074166124.1\|4489085_4489469_+	hypothetical protein	NA	NA	NA	NA
WP_063408912.1\|4489455_4489650_+	hypothetical protein	NA	NA	NA	NA
WP_063408911.1\|4489736_4490336_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	6.2e-56	54.8
WP_063408910.1\|4490335_4491403_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	2.4e-119	66.2
WP_063408909.1\|4491399_4492008_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	9.9e-102	88.1
WP_063408908.1\|4492000_4492909_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	1.5e-141	87.1
WP_023309241.1\|4492914_4493265_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	3.1e-39	70.7
WP_032645069.1\|4493261_4493903_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	3.0e-88	76.5
WP_063408907.1\|4494015_4494483_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	1.8e-50	61.9
WP_071994440.1\|4494445_4494619_-\|lysis	phage lysis protein	S4TNY4	Salmonella_phage	8.1e-17	74.5
WP_063408906.1\|4494578_4495004_-	protein lysB	A0A218M4K2	Erwinia_phage	1.3e-39	67.9
WP_023309246.1\|4495000_4495510_-	lysozyme	A0A218M4K3	Erwinia_phage	9.6e-74	81.5
WP_023309247.1\|4495493_4495715_-	hypothetical protein	A0A218M4L5	Erwinia_phage	3.9e-24	73.6
WP_023309248.1\|4495705_4495909_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-23	71.6
WP_063408905.1\|4496088_4496529_-	DinI-like family protein	A0A218M4I0	Erwinia_phage	1.0e-52	75.2
WP_063408904.1\|4496639_4498829_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	72.8
WP_045404086.1\|4498830_4499052_-	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	1.2e-25	76.4
WP_047174526.1\|4499051_4499279_-	DUF2732 family protein	A0A0M3UL87	Salmonella_phage	2.9e-14	62.7
WP_063408903.1\|4499347_4499686_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	1.5e-38	71.2
WP_088544981.1\|4499913_4500489_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	3.7e-66	62.8
WP_023309262.1\|4500771_4501941_+	molecular chaperone DnaJ	NA	NA	NA	NA
WP_063408902.1\|4501941_4502706_-	siderophore-interacting protein	NA	NA	NA	NA
WP_029741394.1\|4502853_4503348_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_063409589.1\|4503344_4504904_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-11	29.6
WP_063409588.1\|4505240_4506761_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	8.4e-33	48.5
WP_023309267.1\|4507196_4508576_+	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	7.6e-33	27.6
WP_063409587.1\|4508616_4509219_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_063409586.1\|4509261_4509948_+	B3/4 domain-containing protein	NA	NA	NA	NA
WP_059446171.1\|4509960_4510809_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_008503162.1\|4510864_4511158_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_045353994.1\|4511154_4512042_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_063409585.1\|4512053_4513055_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_045353999.1\|4513056_4514034_-	autoinducer 2 import system permease LsrD	NA	NA	NA	NA
WP_063409584.1\|4514034_4515066_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_063409590.1\|4515062_4516550_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	W5SAS9	Pithovirus	3.2e-08	28.1
WP_063409583.1\|4516765_4517734_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_045354008.1\|4517768_4519364_+	autoinducer-2 kinase	NA	NA	NA	NA
WP_088544982.1\|4519542_4521564_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
4519396:4519416	attR	NA	NA	NA	NA
WP_063409581.1\|4521683_4522820_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_023309281.1\|4522903_4523407_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_045354014.1\|4523477_4524476_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_023309283.1\|4524726_4525695_+	TerC family protein	A0A291LBC5	Escherichia_phage	4.4e-35	32.5
WP_029739668.1\|4525957_4527199_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_063409580.1\|4527337_4528825_-	altronate dehydratase	NA	NA	NA	NA
WP_029739666.1\|4528842_4530255_-	glucuronate isomerase	NA	NA	NA	NA
WP_029739665.1\|4530730_4532029_+	MFS transporter	NA	NA	NA	NA
WP_023309288.1\|4532144_4532921_+	transcriptional regulator ExuR	NA	NA	NA	NA
WP_023309289.1\|4533265_4533928_+	DedA family protein	NA	NA	NA	NA
WP_023309290.1\|4533930_4534314_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_023309291.1\|4534456_4534825_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_008503141.1\|4534856_4535162_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_014885329.1\|4535163_4535562_+\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_13

4995536 : 5084494

Salmonella_phage(75.0%)

tail,holin,integrase,head,terminase,plate,portal,tRNA,capsid,protease

attL 5047366:5047407|attR 5080162:5080203

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023333837.1\|4995536_4996637_+\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_045355521.1\|4996727_4997087_-	YijD family membrane protein	NA	NA	NA	NA
WP_008501784.1\|4997096_4997735_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA
WP_008501785.1\|4997931_4999332_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
WP_023309664.1\|4999314_5000232_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA
WP_023309665.1\|5000721_5003373_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_088544997.1\|5003468_5004317_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023309667.1\|5004303_5004660_-	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA
WP_063408244.1\|5004662_5005538_-	[formate-C-acetyltransferase]-activating enzyme	NA	NA	NA	NA
WP_047743353.1\|5005503_5007798_-	formate C-acetyltransferase	A0A1S6UAD4	Serratia_phage	7.8e-06	48.1
WP_023309670.1\|5007849_5008170_-	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA
WP_063408243.1\|5008184_5009264_-	PTS fructose transporter subunit EIIC	NA	NA	NA	NA
WP_063408242.1\|5009569_5012071_+	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	3.9e-11	25.9
WP_063408241.1\|5012085_5012748_+	fructose-6-phosphate aldolase	A0A0E3F0E2	Synechococcus_phage	1.9e-29	33.6
WP_063408240.1\|5012760_5013864_+	glycerol dehydrogenase	NA	NA	NA	NA
WP_045404251.1\|5013947_5016128_-	catalase/peroxidase HPI	NA	NA	NA	NA
WP_023309676.1\|5016275_5017163_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_023309677.1\|5017433_5018585_-	acetylornithine deacetylase	NA	NA	NA	NA
WP_047743344.1\|5018673_5019678_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_088544998.1\|5019684_5020461_+	acetylglutamate kinase	NA	NA	NA	NA
WP_023309680.1\|5020535_5021909_+	argininosuccinate lyase	NA	NA	NA	NA
WP_023309681.1\|5021969_5024402_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA
WP_063408238.1\|5024404_5025565_-	cystathionine gamma-synthase	NA	NA	NA	NA
WP_007369220.1\|5025841_5026159_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_003862040.1\|5026207_5026420_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_047743338.1\|5026620_5028816_+	primosomal protein N'	NA	NA	NA	NA
WP_023309683.1\|5028935_5029961_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA
WP_088544999.1\|5030054_5031047_+	cell division protein FtsN	NA	NA	NA	NA
WP_008501802.1\|5031141_5031672_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_023309685.1\|5031681_5033016_+	HslU--HslV peptidase ATPase subunit	A0A173GE36	Erwinia_phage	2.4e-44	29.3
WP_023309686.1\|5033084_5034005_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_023309687.1\|5034097_5034583_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_010436935.1\|5034666_5034906_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_063408235.1\|5035305_5036151_+	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.0e-16	29.5
WP_023309688.1\|5036172_5037681_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_063408234.1\|5037835_5038846_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_045355538.1\|5038942_5039689_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_023309691.1\|5039689_5040109_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_023309692.1\|5040221_5040818_+	DUF1454 family protein	NA	NA	NA	NA
WP_014172206.1\|5040929_5041697_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_063408233.1\|5041795_5043100_-	anion permease	NA	NA	NA	NA
WP_063408251.1\|5043173_5043917_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_023309695.1\|5044024_5045014_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_023309696.1\|5045246_5046209_-	6-phosphofructokinase	NA	NA	NA	NA
WP_023309697.1\|5046383_5047277_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
5047366:5047407	attL	NA	NA	NA	NA
WP_088545000.1\|5047521_5048169_-	type VI secretion protein	NA	NA	NA	NA
WP_001229865.1\|5048165_5048498_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_001251454.1\|5048599_5048842_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_088545001.1\|5048890_5050009_-	phage late control D family protein	A0A0M4REC6	Salmonella_phage	2.5e-191	98.7
WP_088545002.1\|5050166_5051360_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0M4S6M1	Salmonella_phage	2.9e-214	94.0
WP_088545003.1\|5051372_5051888_+\|tail	phage major tail tube protein	A0A0M5M1I5	Salmonella_phage	1.6e-92	98.2
WP_000047593.1\|5051902_5052238_+	hypothetical protein	A0A0M4RCV2	Salmonella_phage	3.0e-52	99.1
WP_000763324.1\|5052246_5052363_+\|tail	GpE family phage tail protein	A0A0M3ULA8	Salmonella_phage	6.6e-15	100.0
WP_088545004.1\|5052362_5055533_+\|tail	phage tail tape measure protein	A0A0M4R2V3	Salmonella_phage	0.0e+00	74.3
WP_088545005.1\|5055543_5055993_+\|tail	phage tail protein	A0A1J0I2L5	Salmonella_phage	1.9e-78	98.0
WP_088545006.1\|5056130_5056727_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	6.4e-69	64.5
WP_088545007.1\|5056726_5058217_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.6e-188	68.1
WP_088545008.1\|5058206_5058821_-\|tail	phage tail protein I	A0A1J0I2I4	Salmonella_phage	3.6e-107	95.8
WP_088545009.1\|5058813_5059725_-\|plate	baseplate assembly protein	A0A0M4REB7	Salmonella_phage	2.4e-160	98.0
WP_000108898.1\|5059721_5060084_-	GPW/gp25 family protein	A0A0M4S6L5	Salmonella_phage	5.0e-61	100.0
WP_088545010.1\|5060080_5060701_-\|plate	phage baseplate assembly protein V	A0A0M3ULA5	Salmonella_phage	1.6e-91	84.1
WP_088545011.1\|5060858_5061503_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	2.8e-115	97.2
WP_000917105.1\|5061463_5061958_-\|tail	phage tail protein	A0A0M4R2U5	Salmonella_phage	8.7e-80	98.0
WP_088545012.1\|5061957_5062488_-	DUF2514 family protein	A0A0M4S5V1	Salmonella_phage	1.6e-47	94.3
WP_088545013.1\|5062589_5063030_-	lysozyme	A0A0M5M782	Salmonella_phage	1.5e-75	95.9
WP_000543937.1\|5063013_5063349_-\|holin	phage holin, lambda family	A0A0M3ULH4	Salmonella_phage	2.1e-53	98.2
WP_001102549.1\|5063359_5063560_-\|tail	tail protein X	A0A0M4RTN6	Salmonella_phage	1.8e-31	100.0
WP_088545014.1\|5063559_5064048_-\|head	head completion/stabilization protein	A0A0M4QWR7	Salmonella_phage	3.4e-84	96.9
WP_088545015.1\|5064150_5064999_-\|terminase	terminase	A0A0M4R523	Salmonella_phage	1.0e-133	97.5
WP_001246220.1\|5065041_5066088_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.7e-197	99.7
WP_064001006.1\|5066128_5066974_-\|capsid	GPO family capsid scaffolding protein	A0A1J0I2E9	Salmonella_phage	2.7e-150	96.1
WP_023309718.1\|5067127_5068840_+	hypothetical protein	A0A0M4S6K7	Salmonella_phage	0.0e+00	97.5
WP_000014576.1\|5068840_5069890_+\|portal	phage portal protein	A0A0M5M1H6	Salmonella_phage	6.7e-207	100.0
WP_064165005.1\|5070285_5070924_-	hypothetical protein	NA	NA	NA	NA
WP_088545016.1\|5070927_5071926_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_088545017.1\|5072084_5074472_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	0.0e+00	87.1
WP_088545018.1\|5074468_5075470_-	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	7.0e-129	62.8
WP_088545019.1\|5075466_5075787_-	DUF4406 domain-containing protein	A0A1I9KFD3	Aeromonas_phage	1.4e-27	67.8
WP_088545020.1\|5075786_5076758_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	3.6e-138	81.7
WP_088545021.1\|5076754_5077336_-	3'-5' exoribonuclease	NA	NA	NA	NA
WP_088545022.1\|5077340_5077550_-	hypothetical protein	A0A0M4R514	Salmonella_phage	7.2e-20	66.7
WP_047749498.1\|5077636_5077867_-	DUF2724 domain-containing protein	A0A0M4S6M9	Salmonella_phage	1.2e-36	96.1
WP_000290619.1\|5077856_5078063_-	DUF4761 family protein	A0A0M5M1I3	Salmonella_phage	4.3e-33	100.0
WP_088545023.1\|5078073_5078277_-	hypothetical protein	A0A0M3ULI0	Salmonella_phage	4.4e-30	97.0
WP_000136421.1\|5078287_5078569_-	hypothetical protein	A0A0M4RCW1	Salmonella_phage	3.4e-49	96.8
WP_016246740.1\|5078680_5079001_+	transcriptional regulator	A0A0M5M1I9	Salmonella_phage	2.9e-44	84.9
WP_016246739.1\|5079070_5080051_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	2.1e-186	98.8
WP_023309730.1\|5080225_5080732_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
5080162:5080203	attR	NA	NA	NA	NA
WP_006179159.1\|5080882_5081581_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	2.4e-06	30.3
WP_063408701.1\|5081577_5082951_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
WP_059446015.1\|5083004_5083679_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_004203668.1\|5083873_5084494_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	7.1e-63	58.9

Anti-CRISPR protein detection

Acr_ID: NZ_CP017990.1|WP_000952328.1|1397636_1397840_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP017990.1|WP_000952328.1|1397636_1397840_+|hypothetical-protein

1397636_1397840_+

67 aa aa

1319849-1405412

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP017990_4	Orphan	4.1\|1792798\|34\|NZ_CP017990\|CRISPRCasFinder	1792798-1792831	34	1395329-1395296	2
NZ_CP017990_4	Orphan	4.1\|1792798\|34\|NZ_CP017990\|CRISPRCasFinder	1792798-1792831	34	1395395-1395362	2
NZ_CP017990_4	Orphan	4.1\|1792798\|34\|NZ_CP017990\|CRISPRCasFinder	1792798-1792831	34	1395461-1395428	2

1. spacer 4.1|1792798|34|NZ_CP017990|CRISPRCasFinder matches to NZ_CP017990 position: 1395329-1395296, mismatch: 2

aatcgttcactacctggtgcagcagattcacccc	CRISPR spacer
aatagttcactacctggtgcaggagattcacccc	Protospacer
*** ****************** ***********

2. spacer 4.1|1792798|34|NZ_CP017990|CRISPRCasFinder matches to NZ_CP017990 position: 1395395-1395362, mismatch: 2

aatcgttcactacctggtgcagcagattcacccc	CRISPR spacer
aatagttcactacctggtgcaggagattcacccc	Protospacer
*** ****************** ***********

3. spacer 4.1|1792798|34|NZ_CP017990|CRISPRCasFinder matches to NZ_CP017990 position: 1395461-1395428, mismatch: 2

aatcgttcactacctggtgcagcagattcacccc	CRISPR spacer
aatagttcactacctggtgcaggagattcacccc	Protospacer
*** ****************** ***********

3. NZ_CP017992

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3008 : 12734

uncultured_Caudovirales_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042005207.1\|3008_3572_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	2.6e-19	34.4
WP_042005197.1\|3720_4062_-	hypothetical protein	NA	NA	NA	NA
WP_042005196.1\|4103_4835_-	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	7.9e-05	37.5
WP_011787830.1\|5348_8429_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.2e-51	30.6
WP_011918375.1\|8452_8764_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011787805.1\|8763_9024_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011787804.1\|9193_9814_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.1e-26	37.1
WP_011787803.1\|9931_10264_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_011787802.1\|10354_11209_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.3e-67	48.6
WP_011787801.1\|11243_12734_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	8.6e-224	82.2

DBSCAN-SWA_2

49243 : 59848

Emiliania_huxleyi_virus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042005164.1\|49243_51241_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.6e-23	26.2
WP_042005204.1\|51310_51553_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_042005163.1\|51605_52160_-	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	3.3e-51	74.0
WP_181008688.1\|52489_52711_+	hypothetical protein	NA	NA	NA	NA
WP_042005162.1\|52833_53151_-	hypothetical protein	NA	NA	NA	NA
WP_181008689.1\|53185_53440_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	4.7e-13	50.0
WP_015059779.1\|53632_53824_-	hypothetical protein	NA	NA	NA	NA
WP_042005160.1\|53866_54373_-	antirestriction protein ArdA	A0A1I9S7Y0	Rhodococcus_phage	1.4e-08	31.2
WP_103791525.1\|54509_54713_+	hypothetical protein	NA	NA	NA	NA
WP_042005159.1\|54779_55559_-	hypothetical protein	NA	NA	NA	NA
WP_042005158.1\|55612_56032_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_042005157.1\|56042_56264_-	hypothetical protein	NA	NA	NA	NA
WP_042005156.1\|56263_56941_-	DNA methylase	A0A2I7RE86	Vibrio_phage	9.5e-29	36.9
WP_042005203.1\|57300_57972_+	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	8.2e-81	61.4
WP_042005155.1\|58151_58574_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	9.2e-30	53.2
WP_042005154.1\|58573_59848_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.2e-158	65.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017991

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017990

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

3. NZ_CP017992

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection