CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP022019	Salmonella enterica subsp. enterica serovar Quebec str. S-1267 chromosome, complete genome	2 crisprs	cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	24	4
NZ_CP022017	Salmonella enterica subsp. enterica serovar Quebec str. S-1267 plasmid punnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP022018	Salmonella enterica subsp. enterica serovar Quebec str. S-1267 plasmid punamed1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022019_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022019_1

2148217-2149343

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

18 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP022019_1

>merge|NZ_CP022019|1|2148217-2149343|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACACTTTTTAGAGGTGTACACACTGTCGGCCTTTTGCGGTTTATCCCCGCTGGCGCGGGGAACACGGAGGTGATCCGGGATTTAAACAAAATGATTAAAGTTTATCCCCGCTGGCGCGGGGAACACCCCATATAGTTTGTGATCGTCTGCGTATCAGCCGGTTTATCCCCGCTGGCGCGGGGAACACGCATAGGTCAGCGAAATATCGTTTTTCAGCGTCGGTTTATCCCCGCTGGCGCGGGGAACACATCCCCTCGCTGTTTTTCTAAGGCGGCGCGTTCGGTTTATCCCCGCTGGCGCGGGGAACACCATAAGGGGAAAACCCAAAAAACGCGTTAAATCGGTTTATCCCCGCTGGCGCGGGGAACACTTTAACTATTCATAAAATAGACAGAGTTGTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGACACCGTTAAAATTCACCTCAGCGCTGGCGCGGTTTATCCCCGCTGGCGCGGGGAACACACGAGGACTCTTTAACAGACGCCCGCGTAACCCGGTTTATCCCCGCTGGCGCGGGGAACACGCATCGGTGGCGCTGGCCAGTTCAAAAATACGCGGTTTATCCCCGCTGGCGCGGGGAACACGCGGTAGTATTTTTTAGCAGGTGCGTCGTGCCCGGTTTATCCCCGCTGGCGCGGGGAACACACATTCCATCATTTCATCCAGCAGTGGACGGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTACGCGCTGTGCTGTCGTATGCCACCCGTAAGGTTTATCCCCGCTGGCGCGGGGAACACCGTTCGACGTGGGAGAACGAAAATACGCTGTCCGGTTTATCCCCGCTGGCGCGGGGAACACATCGCGTGACTGAAATATATAATCAGCCAGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGTAGTGGTGGGAATATGTTTAACCAGCGGTTTATCCCCGCTGGCGCGGGGAACACGGCAATTGGCGCGCTGGCGTAAATGGAGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTGGAATAACCGCCACATTATGGAGGCGTTCACCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP022019|1|1|2148217-2149343|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAC	TTTTTAGAGGTGTACACACTGTCGGCCTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAGGTGATCCGGGATTTAAACAAAATGATTA
AAGTTTATCCCCGCTGGCGCGGGGAACAC	CCCATATAGTTTGTGATCGTCTGCGTATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATAGGTCAGCGAAATATCGTTTTTCAGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCCCTCGCTGTTTTTCTAAGGCGGCGCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATAAGGGGAAAACCCAAAAAACGCGTTAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTAACTATTCATAAAATAGACAGAGTTGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACACCGTTAAAATTCACCTCAGCGCTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGAGGACTCTTTAACAGACGCCCGCGTAACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATCGGTGGCGCTGGCCAGTTCAAAAATACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGTAGTATTTTTTAGCAGGTGCGTCGTGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACATTCCATCATTTCATCCAGCAGTGGACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTACGCGCTGTGCTGTCGTATGCCACCCGTA
AGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTCGACGTGGGAGAACGAAAATACGCTGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGCGTGACTGAAATATATAATCAGCCAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGTAGTGGTGGGAATATGTTTAACCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAATTGGCGCGCTGGCGTAAATGGAGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGAATAACCGCCACATTATGGAGGCGTTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP022019|1|1|2148217-2149343|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAC	TTTTTAGAGGTGTACACACTGTCGGCCTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAGGTGATCCGGGATTTAAACAAAATGATTA
AAGTTTATCCCCGCTGGCGCGGGGAACAC	CCCATATAGTTTGTGATCGTCTGCGTATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATAGGTCAGCGAAATATCGTTTTTCAGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCCCTCGCTGTTTTTCTAAGGCGGCGCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATAAGGGGAAAACCCAAAAAACGCGTTAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTAACTATTCATAAAATAGACAGAGTTGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACACCGTTAAAATTCACCTCAGCGCTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGAGGACTCTTTAACAGACGCCCGCGTAACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATCGGTGGCGCTGGCCAGTTCAAAAATACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGTAGTATTTTTTAGCAGGTGCGTCGTGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACATTCCATCATTTCATCCAGCAGTGGACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTACGCGCTGTGCTGTCGTATGCCACCCGTA
AGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTCGACGTGGGAGAACGAAAATACGCTGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGCGTGACTGAAATATATAATCAGCCAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGTAGTGGTGGGAATATGTTTAACCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAATTGGCGCGCTGGCGTAAATGGAGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGAATAACCGCCACATTATGGAGGCGTTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP022019|1|1|2148705-2149343|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGAGGACTCTTTAACAGACGCCCGCGTAACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATCGGTGGCGCTGGCCAGTTCAAAAATACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGTAGTATTTTTTAGCAGGTGCGTCGTGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACATTCCATCATTTCATCCAGCAGTGGACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTACGCGCTGTGCTGTCGTATGCCACCCGTA
AGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTCGACGTGGGAGAACGAAAATACGCTGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGCGTGACTGAAATATATAATCAGCCAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGTAGTGGTGGGAATATGTTTAACCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAATTGGCGCGCTGGCGTAAATGGAGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGAATAACCGCCACATTATGGAGGCGTTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022019.1\|WP_001221538.1\|2140083_2140845_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP022019.1\|WP_001092269.1\|2144547_2145987_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP022019.1\|WP_001145539.1\|2158959_2159913_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP022019.1\|WP_088524039.1\|2140825_2141875_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP022019.1\|WP_000490481.1\|2147155_2148202_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP022019.1\|WP_000281417.1\|2150637_2151345_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_CP022019.1\|WP_000666424.1\|2151344_2152070_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP022019.1\|WP_001049217.1\|2153779_2155315_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP022019.1\|WP_000517480.1\|2143079_2143391_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP022019.1\|WP_000080397.1\|2160000_2160735_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP022019.1\|WP_000192882.1\|2155876_2158576_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP022019.1\|WP_001173663.1\|2143955_2144561_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP022019.1\|WP_001537530.1\|2143581_2143905_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP022019.1\|WP_000935101.1\|2153160_2153763_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP022019.1\|WP_001530225.1\|2152079_2153138_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP022019.1\|WP_000062281.1\|2149427_2149721_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP022019.1\|WP_001219244.1\|2141871_2142351_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP022019.1\|WP_001607613.1\|2149723_2150641_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP022019.1\|WP_000436059.1\|2145996_2146905_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP022019.1\|WP_088524040.1\|2142350_2143061_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
NZ_CP022019.1\|WP_001221538.1\|2140083_2140845_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP022019.1\|WP_001092269.1\|2144547_2145987_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP022019.1\|WP_001145539.1\|2158959_2159913_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP022019.1\|WP_088524039.1\|2140825_2141875_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP022019.1\|WP_000490481.1\|2147155_2148202_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP022019.1\|WP_000281417.1\|2150637_2151345_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.13186e-88
NZ_CP022019.1\|WP_000666424.1\|2151344_2152070_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.38262e-47
NZ_CP022019.1\|WP_001049217.1\|2153779_2155315_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP022019.1\|WP_000517480.1\|2143079_2143391_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP022019.1\|WP_000080397.1\|2160000_2160735_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
NZ_CP022019.1\|WP_000192882.1\|2155876_2158576_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.32798e-141
NZ_CP022019.1\|WP_001173663.1\|2143955_2144561_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP022019.1\|WP_001537530.1\|2143581_2143905_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP022019.1\|WP_000935101.1\|2153160_2153763_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.9872e-37
NZ_CP022019.1\|WP_001530225.1\|2152079_2153138_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.62968e-122
NZ_CP022019.1\|WP_000062281.1\|2149427_2149721_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.59475e-65
NZ_CP022019.1\|WP_001219244.1\|2141871_2142351_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP022019.1\|WP_001607613.1\|2149723_2150641_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.49337e-156
NZ_CP022019.1\|WP_000436059.1\|2145996_2146905_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP022019.1\|WP_088524040.1\|2142350_2143061_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.12792e-118

>NZ_CP022019.1|WP_000490481.1|2147155_2148202_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP022019.1|WP_000436059.1|2145996_2146905_-|sulfate-adenylyltransferase-subunit-CysD
MEQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP022019.1|WP_001092269.1|2144547_2145987_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP022019.1|WP_001173663.1|2143955_2144561_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP022019.1|WP_001537530.1|2143581_2143905_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP022019.1|WP_000517480.1|2143079_2143391_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP022019.1|WP_088524040.1|2142350_2143061_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERANSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP022019.1|WP_001219244.1|2141871_2142351_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP022019.1|WP_088524039.1|2140825_2141875_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNVQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMVTASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP022019.1|WP_001221538.1|2140083_2140845_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP022019.1|WP_000062281.1|2149427_2149721_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP022019.1|WP_001607613.1|2149723_2150641_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWLGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPIALGDSGHRST
>NZ_CP022019.1|WP_000281417.1|2150637_2151345_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLSQHSLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQYRFVRKDQQKPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKRR
>NZ_CP022019.1|WP_000666424.1|2151344_2152070_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP022019.1|WP_001530225.1|2152079_2153138_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDDSGRPKTAYMGGVERLRVSSQSLKRAWRVSETFEGAMDGFMGKRTRRIGVDYVYRPMIAAGVTGKIAKSAAEKIAAQFGKLKSDKNAPEEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLATAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP022019.1|WP_000935101.1|2153160_2153763_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAALCRILHPDAQKALLDWFATLSERYERKDGKRVNGRVWRAELKRMAPPYGVMICEGYDALRQTLLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLNGSTPCVSVLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRTPFERNRIRWANEYLSTSRGK
>NZ_CP022019.1|WP_001049217.1|2153779_2155315_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLITEKWLPVIFSSGEKTRISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPEDKEEWADIWHDGIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNSHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKARCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP022019.1|WP_000192882.1|2155876_2158576_+|CRISPR-associated-helicase/endonuclease-Cas3
MTQMEYLNYLRYWGKTNKSNKDITPPYHLLAYHCLDVAACGYYIIKNNIFDSRSILEKCGIIGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSYYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQQKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>NZ_CP022019.1|WP_001145539.1|2158959_2159913_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTSNAQIKVAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NZ_CP022019.1|WP_000080397.1|2160000_2160735_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP022019_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022019_2

2166103-2167107

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAA	CRT
CGGTTTATCCCCGCTGGCGCGGGGAA	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAATAC	PILER-CR

16 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP022019_2

>merge|NZ_CP022019|2|2166103-2167107|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
ACGGCTATCCCCGCTGACGCGGGGAACACAGTGCCGATGCGCGGTATCTGGGGAATTTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACGGTGGAATCGCGCAAAACTTTGTTTGTTTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACGGGTACTGACAATAGTACAAATAAAAAAAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGACCAAACCAAAGTGTGAGAATCCTGTATACGGTTTATCCCCGCTGGCGCGGGGAACACGGTTTTGGCTATCTGAGCGGCGTCCGCCGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACTGAGGCGCTGGCAGACCCGGAGTGTTTGAAATCGGTTTATCCCCGCTGACGCGGGGAACACTAAGTCGCTGGGCATAAGCAAGAACGCAATTGCGGTTTATCCCCGCTGGTGCGGGGAATACACCATCCCCCGGACTGAGCGGCGCTACGGCCGCGGTTTATCCCCGCTGGCGCGGGGAATACAGATTCATACAAGTCCTACAGTAAAAGTGCTCCGGTTTATCCCCGCTGGCGCGGGGAATACTGCGATGAGTGGTACGTTGTTATTCATATTGCCGGTTTATCCCCGCTGGCGCGGGGAATACTGACGCTGGACGAGGCGAGTTCTTTCCCCGGACGGTTTATCCCCGCTGGCGCGGGGAATACATCATAACGGTTTTTTACATATAAGAAGTTGCCGGTTTATCCCCGCTGGCGCGGGGAATACGATGTGGTGCGGGGTGGTGGTGGATTACGTACCGGTTTATCCCCGCTGGCGCGGGGAATACCGGATCACCTGTCATAACCGCATTCTCAAACGCGGTTTATCCCCGCTGGCGCGGGGAATACTTCCCTGCAAGTTGAAGCGCTGCCCCCGGACGCGGTTTATCCCCGCTGGCGCGGGGAATACTCCTTCAGACGGTTCCATTCCGTAGCGCGGGCCGGTTTATCCCCGCTGGCGCGGGGAATAC

>NZ_CP022019|2|2|2166103-2167107|CRISPRCasFinder
ACGGCTATCCCCGCTGACGCGGGGAACAC	AGTGCCGATGCGCGGTATCTGGGGAATTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGGAATCGCGCAAAACTTTGTTTGTTTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTACTGACAATAGTACAAATAAAAAAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACCAAACCAAAGTGTGAGAATCCTGTATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTTGGCTATCTGAGCGGCGTCCGCCGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAGGCGCTGGCAGACCCGGAGTGTTTGAAAT
CGGTTTATCCCCGCTGACGCGGGGAACAC	TAAGTCGCTGGGCATAAGCAAGAACGCAATTG
CGGTTTATCCCCGCTGGTGCGGGGAATAC	ACCATCCCCCGGACTGAGCGGCGCTACGGCCG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	AGATTCATACAAGTCCTACAGTAAAAGTGCTC
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TGCGATGAGTGGTACGTTGTTATTCATATTGC
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TGACGCTGGACGAGGCGAGTTCTTTCCCCGGA
CGGTTTATCCCCGCTGGCGCGGGGAATAC	ATCATAACGGTTTTTTACATATAAGAAGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAATAC	GATGTGGTGCGGGGTGGTGGTGGATTACGTAC
CGGTTTATCCCCGCTGGCGCGGGGAATAC	CGGATCACCTGTCATAACCGCATTCTCAAACG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TTCCCTGCAAGTTGAAGCGCTGCCCCCGGACG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TCCTTCAGACGGTTCCATTCCGTAGCGCGGGC
CGGTTTATCCCCGCTGGCGCGGGGAATAC

>NZ_CP022019|2|2|2166103-2167104|CRT
ACGGCTATCCCCGCTGACGCGGGGAA	CACAGTGCCGATGCGCGGTATCTGGGGAATTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGTGGAATCGCGCAAAACTTTGTTTGTTTCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGGTACTGACAATAGTACAAATAAAAAAAACG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACTCGACCAAACCAAAGTGTGAGAATCCTGTATA
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGTTTTGGCTATCTGAGCGGCGTCCGCCGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACTGAGGCGCTGGCAGACCCGGAGTGTTTGAAAT
CGGTTTATCCCCGCTGACGCGGGGAA	CACTAAGTCGCTGGGCATAAGCAAGAACGCAATTG
CGGTTTATCCCCGCTGGTGCGGGGAA	TACACCATCCCCCGGACTGAGCGGCGCTACGGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACAGATTCATACAAGTCCTACAGTAAAAGTGCTC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTGCGATGAGTGGTACGTTGTTATTCATATTGC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTGACGCTGGACGAGGCGAGTTCTTTCCCCGGA
CGGTTTATCCCCGCTGGCGCGGGGAA	TACATCATAACGGTTTTTTACATATAAGAAGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACGATGTGGTGCGGGGTGGTGGTGGATTACGTAC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACCGGATCACCTGTCATAACCGCATTCTCAAACG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTTCCCTGCAAGTTGAAGCGCTGCCCCCGGACG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTCCTTCAGACGGTTCCATTCCGTAGCGCGGGC
CGGTTTATCCCCGCTGGCGCGGGGAA

>NZ_CP022019|2|2|2166164-2166738|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGTGGAATCGCGCAAAACTTTGTTTGTTTCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGGTACTGACAATAGTACAAATAAAAAAAACG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACTCGACCAAACCAAAGTGTGAGAATCCTGTATA
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGTTTTGGCTATCTGAGCGGCGTCCGCCGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACTGAGGCGCTGGCAGACCCGGAGTGTTTGAAAT
CGGTTTATCCCCGCTGACGCGGGGAA	CACTAAGTCGCTGGGCATAAGCAAGAACGCAATTG
CGGTTTATCCCCGCTGGTGCGGGGAA	TACACCATCCCCCGGACTGAGCGGCGCTACGGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACAGATTCATACAAGTCCTACAGTAAAAGTGCTC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTGCGATGAGTGGTACGTTGTTATTCATATTGC
CGGTTTATCCCCGCTGGCGCGGGGAATACTGACGCTGGACGAGGCGAGTTCTTTCCCCGGACGGTTTATCCCCGCTGGCGCGGGGAATACATCATAACGGTTTTTTACATATAAGAAGTTGCCGGTTTATCCCCGCTGGCGCGGGGAATAC	GATGTGGTGCGGGGTGGTGGTGGATTACGTAC
CGGTTTATCCCCGCTGGCGCGGGGAATAC	CGGATCACCTGTCATAACCGCATTCTCAAACG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TTCCCTGCAAGTTGAAGCGCTGCCCCCGGACG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TCCTTCAGACGGTTCCATTCCGTAGCGCGGGC


>NZ_CP022019|2|3|2166835-2167107|PILER-CR
	CACGGTGGAATCGCGCAAAACTTTGTTTGTTTCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGGTACTGACAATAGTACAAATAAAAAAAACG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACTCGACCAAACCAAAGTGTGAGAATCCTGTATA
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGTTTTGGCTATCTGAGCGGCGTCCGCCGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACTGAGGCGCTGGCAGACCCGGAGTGTTTGAAAT
CGGTTTATCCCCGCTGACGCGGGGAA	CACTAAGTCGCTGGGCATAAGCAAGAACGCAATTG
CGGTTTATCCCCGCTGGTGCGGGGAA	TACACCATCCCCCGGACTGAGCGGCGCTACGGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACAGATTCATACAAGTCCTACAGTAAAAGTGCTC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTGCGATGAGTGGTACGTTGTTATTCATATTGC
CGGTTTATCCCCGCTGGCGCGGGGAATACTGACGCTGGACGAGGCGAGTTCTTTCCCCGGACGGTTTATCCCCGCTGGCGCGGGGAATACATCATAACGGTTTTTTACATATAAGAAGTTGCCGGTTTATCCCCGCTGGCGCGGGGAATAC	GATGTGGTGCGGGGTGGTGGTGGATTACGTAC
CGGTTTATCCCCGCTGGCGCGGGGAATAC	CGGATCACCTGTCATAACCGCATTCTCAAACG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TTCCCTGCAAGTTGAAGCGCTGCCCCCGGACG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TCCTTCAGACGGTTCCATTCCGTAGCGCGGGC
CGGTTTATCCCCGCTGGCGCGGGGAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022019.1\|WP_000192882.1\|2155876_2158576_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP022019.1\|WP_000935101.1\|2153160_2153763_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP022019.1\|WP_000226841.1\|2173727_2175962_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP022019.1\|WP_000108313.1\|2164757_2165120_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP022019.1\|WP_023217503.1\|2176013_2177309_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP022019.1\|WP_000036734.1\|2168210_2169509_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP022019.1\|WP_000706479.1\|2180166_2181309_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP022019.1\|WP_088524041.1\|2162522_2164322_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP022019.1\|WP_001049217.1\|2153779_2155315_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP022019.1\|WP_001290664.1\|2160810_2162523_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP022019.1\|WP_000480218.1\|2173286_2173643_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP022019.1\|WP_000186400.1\|2177366_2180123_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP022019.1\|WP_000210864.1\|2169591_2171229_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP022019.1\|WP_001145539.1\|2158959_2159913_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP022019.1\|WP_001207993.1\|2165207_2166005_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP022019.1\|WP_001199956.1\|2167403_2168075_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP022019.1\|WP_000080397.1\|2160000_2160735_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP022019.1\|WP_001261199.1\|2173024_2173321_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP022019.1\|WP_000210451.1\|2171456_2172257_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP022019.1\|WP_001530225.1\|2152079_2153138_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153

Protein	Function_ID	Function_description	E-value
NZ_CP022019.1\|WP_000192882.1\|2155876_2158576_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.32798e-141
NZ_CP022019.1\|WP_000935101.1\|2153160_2153763_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.9872e-37
NZ_CP022019.1\|WP_000226841.1\|2173727_2175962_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP022019.1\|WP_000108313.1\|2164757_2165120_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP022019.1\|WP_023217503.1\|2176013_2177309_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP022019.1\|WP_000036734.1\|2168210_2169509_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP022019.1\|WP_000706479.1\|2180166_2181309_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP022019.1\|WP_088524041.1\|2162522_2164322_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP022019.1\|WP_001049217.1\|2153779_2155315_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP022019.1\|WP_001290664.1\|2160810_2162523_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP022019.1\|WP_000480218.1\|2173286_2173643_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP022019.1\|WP_000186400.1\|2177366_2180123_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP022019.1\|WP_000210864.1\|2169591_2171229_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP022019.1\|WP_001145539.1\|2158959_2159913_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP022019.1\|WP_001207993.1\|2165207_2166005_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.20818e-102
NZ_CP022019.1\|WP_001199956.1\|2167403_2168075_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP022019.1\|WP_000080397.1\|2160000_2160735_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
NZ_CP022019.1\|WP_001261199.1\|2173024_2173321_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.79136e-12
NZ_CP022019.1\|WP_000210451.1\|2171456_2172257_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP022019.1\|WP_001530225.1\|2152079_2153138_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.62968e-122

>NZ_CP022019.1|WP_001207993.1|2165207_2166005_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDDSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHNAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEQKPEKLCGCHCTGVWGRLWLPEITAPATGDVLRF
>NZ_CP022019.1|WP_000108313.1|2164757_2165120_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP022019.1|WP_088524041.1|2162522_2164322_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NZ_CP022019.1|WP_001290664.1|2160810_2162523_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP022019.1|WP_000080397.1|2160000_2160735_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP022019.1|WP_001145539.1|2158959_2159913_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTSNAQIKVAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NZ_CP022019.1|WP_000192882.1|2155876_2158576_+|CRISPR-associated-helicase/endonuclease-Cas3
MTQMEYLNYLRYWGKTNKSNKDITPPYHLLAYHCLDVAACGYYIIKNNIFDSRSILEKCGIIGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSYYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQQKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>NZ_CP022019.1|WP_001049217.1|2153779_2155315_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLITEKWLPVIFSSGEKTRISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPEDKEEWADIWHDGIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNSHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKARCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP022019.1|WP_000935101.1|2153160_2153763_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAALCRILHPDAQKALLDWFATLSERYERKDGKRVNGRVWRAELKRMAPPYGVMICEGYDALRQTLLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLNGSTPCVSVLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRTPFERNRIRWANEYLSTSRGK
>NZ_CP022019.1|WP_001530225.1|2152079_2153138_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDDSGRPKTAYMGGVERLRVSSQSLKRAWRVSETFEGAMDGFMGKRTRRIGVDYVYRPMIAAGVTGKIAKSAAEKIAAQFGKLKSDKNAPEEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLATAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP022019.1|WP_001199956.1|2167403_2168075_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP022019.1|WP_000036734.1|2168210_2169509_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP022019.1|WP_000210864.1|2169591_2171229_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP022019.1|WP_000210451.1|2171456_2172257_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP022019.1|WP_001261199.1|2173024_2173321_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP022019.1|WP_000480218.1|2173286_2173643_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP022019.1|WP_000226841.1|2173727_2175962_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP022019.1|WP_023217503.1|2176013_2177309_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAVLLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMIARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP022019.1|WP_000186400.1|2177366_2180123_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP022019.1|WP_000706479.1|2180166_2181309_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022019_1	1.18\|2149283\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149283-2149314	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	137-168	0	1.0
NZ_CP022019_1	1.18\|2149283\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149283-2149314	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	107513-107544	0	1.0
NZ_CP022019_1	1.18\|2149283\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149283-2149314	32	NC_004313	Salmonella phage ST64B, complete genome	17505-17536	0	1.0
NZ_CP022019_1	1.18\|2149283\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149283-2149314	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	17505-17536	0	1.0
NZ_CP022019_2	2.16\|2167047\|32\|NZ_CP022019\|CRISPRCasFinder,PILER-CR	2167047-2167078	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	23087-23118	0	1.0
NZ_CP022019_2	2.7\|2166498\|32\|NZ_CP022019\|CRISPRCasFinder	2166498-2166529	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	50515-50546	1	0.969
NZ_CP022019_2	2.16\|2167047\|32\|NZ_CP022019\|CRISPRCasFinder,PILER-CR	2167047-2167078	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	51897-51928	1	0.969
NZ_CP022019_2	2.16\|2167047\|32\|NZ_CP022019\|CRISPRCasFinder,PILER-CR	2167047-2167078	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	101264-101295	1	0.969
NZ_CP022019_1	1.10\|2148795\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2148795-2148826	32	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	2256-2287	2	0.938
NZ_CP022019_1	1.15\|2149100\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149100-2149131	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	24477-24508	2	0.938
NZ_CP022019_1	1.15\|2149100\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149100-2149131	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	50508-50539	2	0.938
NZ_CP022019_1	1.15\|2149100\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149100-2149131	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	102652-102683	2	0.938
NZ_CP022019_2	2.32\|2167044\|35\|NZ_CP022019\|CRT	2167044-2167078	35	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	23084-23118	2	0.943
NZ_CP022019_1	1.9\|2148734\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2148734-2148765	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	35847-35878	3	0.906
NZ_CP022019_1	1.14\|2149039\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149039-2149070	32	LR597637	Escherichia phage ESSI2_ev239 genome assembly, chromosome: 1	18483-18514	3	0.906
NZ_CP022019_2	2.23\|2166495\|35\|NZ_CP022019\|CRT,PILER-CR	2166495-2166529	35	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	50515-50549	3	0.914
NZ_CP022019_2	2.32\|2167044\|35\|NZ_CP022019\|CRT	2167044-2167078	35	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	51897-51931	3	0.914
NZ_CP022019_2	2.32\|2167044\|35\|NZ_CP022019\|CRT	2167044-2167078	35	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	101261-101295	3	0.914
NZ_CP022019_1	1.12\|2148917\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2148917-2148948	32	MK804891	Aeromonas phage 2_D05, complete genome	34418-34449	6	0.812
NZ_CP022019_1	1.12\|2148917\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2148917-2148948	32	MK804892	Aeromonas phage 4_D05, complete genome	33277-33308	6	0.812
NZ_CP022019_1	1.12\|2148917\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2148917-2148948	32	MH179474	Aeromonas phage 62AhydR11PP, complete genome	14185-14216	6	0.812
NZ_CP022019_2	2.6\|2166437\|32\|NZ_CP022019\|CRISPRCasFinder	2166437-2166468	32	MH001450	Mycobacterium phage Jeon, complete genome	52496-52527	6	0.812
NZ_CP022019_1	1.4\|2148429\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148429-2148460	32	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	205953-205984	8	0.75
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MT080601	UNVERIFIED: Staphylococcus phage vB_SauM_EW72, complete genome	28900-28931	8	0.75
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MT080585	UNVERIFIED: Staphylococcus phage vB_SauM_EW18, complete genome	142453-142484	8	0.75
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MT080591	UNVERIFIED: Staphylococcus phage vB_SauM_EW29, complete genome	138989-139020	8	0.75
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MT080589	UNVERIFIED: Staphylococcus phage vB_SauM_EW26, complete genome	41010-41041	8	0.75
NZ_CP022019_1	1.15\|2149100\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149100-2149131	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	805732-805763	8	0.75
NZ_CP022019_1	1.16\|2149161\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149161-2149192	32	MN693424	Marine virus AFVG_25M201, complete genome	7303-7334	8	0.75
NZ_CP022019_2	2.7\|2166498\|32\|NZ_CP022019\|CRISPRCasFinder	2166498-2166529	32	NZ_CP028385	Providencia heimbachae strain 99101 plasmid unnamed, complete sequence	46735-46766	8	0.75
NZ_CP022019_2	2.8\|2166559\|32\|NZ_CP022019\|CRISPRCasFinder	2166559-2166590	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	701316-701347	8	0.75
NZ_CP022019_2	2.13\|2166864\|32\|NZ_CP022019\|CRISPRCasFinder,PILER-CR	2166864-2166895	32	JX469827	Uncultured bacterium plasmid pEMT3, complete sequence	19933-19964	8	0.75
NZ_CP022019_2	2.13\|2166864\|32\|NZ_CP022019\|CRISPRCasFinder,PILER-CR	2166864-2166895	32	JN106170	Uncultured bacterium plasmid pAKD25, complete sequence	17044-17075	8	0.75
NZ_CP022019_2	2.13\|2166864\|32\|NZ_CP022019\|CRISPRCasFinder,PILER-CR	2166864-2166895	32	JN106175	Uncultured bacterium plasmid pAKD34, complete sequence	17043-17074	8	0.75
NZ_CP022019_2	2.13\|2166864\|32\|NZ_CP022019\|CRISPRCasFinder,PILER-CR	2166864-2166895	32	JN106167	Uncultured bacterium plasmid pAKD16, complete sequence	27451-27482	8	0.75
NZ_CP022019_2	2.13\|2166864\|32\|NZ_CP022019\|CRISPRCasFinder,PILER-CR	2166864-2166895	32	NC_019318	Ralstonia pickettii plasmid p712, complete sequence	44577-44608	8	0.75
NZ_CP022019_1	1.2\|2148307\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148307-2148338	32	MT374854	Yersinia phage vB_YpM_6, complete genome	883-914	9	0.719
NZ_CP022019_1	1.2\|2148307\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148307-2148338	32	MT374853	Yersinia phage vB_YpM_5, complete genome	2308-2339	9	0.719
NZ_CP022019_1	1.5\|2148490\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148490-2148521	32	NC_022437	Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence	23845-23876	9	0.719
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MN693066	Marine virus AFVG_25M551, complete genome	12287-12318	9	0.719
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MN693345	Marine virus AFVG_25M552, complete genome	18761-18792	9	0.719
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MN693995	Marine virus AFVG_250M873, complete genome	48672-48703	9	0.719
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MN693610	Marine virus AFVG_250M347, complete genome	5529-5560	9	0.719
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MN693983	Marine virus AFVG_250M348, complete genome	48251-48282	9	0.719
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MN694535	Marine virus AFVG_250M1087, complete genome	48621-48652	9	0.719
NZ_CP022019_1	1.7\|2148612\|32\|NZ_CP022019\|CRISPRCasFinder,CRT	2148612-2148643	32	MN694384	Marine virus AFVG_250M349, complete genome	48100-48131	9	0.719
NZ_CP022019_1	1.10\|2148795\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2148795-2148826	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	59147-59178	9	0.719
NZ_CP022019_2	2.3\|2166254\|32\|NZ_CP022019\|CRISPRCasFinder	2166254-2166285	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	1340-1371	9	0.719
NZ_CP022019_2	2.3\|2166254\|32\|NZ_CP022019\|CRISPRCasFinder	2166254-2166285	32	KX156762	Staphylococcus phage vB_SauS_IMEP5, complete genome	15936-15967	9	0.719
NZ_CP022019_2	2.5\|2166376\|32\|NZ_CP022019\|CRISPRCasFinder	2166376-2166407	32	NC_015851	Acidithiobacillus caldus SM-1 megaplasmid, complete sequence	79853-79884	9	0.719
NZ_CP022019_2	2.29\|2166861\|35\|NZ_CP022019\|CRT	2166861-2166895	35	JX469827	Uncultured bacterium plasmid pEMT3, complete sequence	19930-19964	9	0.743
NZ_CP022019_2	2.29\|2166861\|35\|NZ_CP022019\|CRT	2166861-2166895	35	NC_019318	Ralstonia pickettii plasmid p712, complete sequence	44577-44611	9	0.743
NZ_CP022019_1	1.11\|2148856\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2148856-2148887	32	NZ_CP028385	Providencia heimbachae strain 99101 plasmid unnamed, complete sequence	35800-35831	10	0.688
NZ_CP022019_2	2.3\|2166254\|32\|NZ_CP022019\|CRISPRCasFinder	2166254-2166285	32	NZ_CP032824	Arcobacter cryaerophilus ATCC 43158 plasmid pACRY43158, complete sequence	24667-24698	10	0.688
NZ_CP022019_2	2.3\|2166254\|32\|NZ_CP022019\|CRISPRCasFinder	2166254-2166285	32	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	396582-396613	10	0.688
NZ_CP022019_2	2.9\|2166620\|32\|NZ_CP022019\|CRISPRCasFinder	2166620-2166651	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	55897-55928	10	0.688
NZ_CP022019_1	1.16\|2149161\|32\|NZ_CP022019\|CRISPRCasFinder,CRT,PILER-CR	2149161-2149192	32	MK494099	Mycobacterium phage Typha, complete genome	67914-67945	11	0.656
NZ_CP022019_2	2.19\|2166251\|35\|NZ_CP022019\|CRT,PILER-CR	2166251-2166285	35	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	1337-1371	11	0.686

1. spacer 1.18|2149283|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 0, identity: 1.0

tggaataaccgccacattatggaggcgttcac	CRISPR spacer
tggaataaccgccacattatggaggcgttcac	Protospacer
********************************

2. spacer 1.18|2149283|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 0, identity: 1.0

tggaataaccgccacattatggaggcgttcac	CRISPR spacer
tggaataaccgccacattatggaggcgttcac	Protospacer
********************************

3. spacer 1.18|2149283|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 0, identity: 1.0

tggaataaccgccacattatggaggcgttcac	CRISPR spacer
tggaataaccgccacattatggaggcgttcac	Protospacer
********************************

4. spacer 1.18|2149283|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 0, identity: 1.0

tggaataaccgccacattatggaggcgttcac	CRISPR spacer
tggaataaccgccacattatggaggcgttcac	Protospacer
********************************

5. spacer 2.16|2167047|32|NZ_CP022019|CRISPRCasFinder,PILER-CR matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tccttcagacggttccattccgtagcgcgggc	CRISPR spacer
tccttcagacggttccattccgtagcgcgggc	Protospacer
********************************

6. spacer 2.7|2166498|32|NZ_CP022019|CRISPRCasFinder matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969

taagtcgctgggcataagcaagaacgcaattg	CRISPR spacer
tcagtcgctgggcataagcaagaacgcaattg	Protospacer
* ******************************

7. spacer 2.16|2167047|32|NZ_CP022019|CRISPRCasFinder,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tccttcagacggttccattccgtagcgcgggc	CRISPR spacer
tccttcagacggttccattctgtagcgcgggc	Protospacer
********************.***********

8. spacer 2.16|2167047|32|NZ_CP022019|CRISPRCasFinder,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tccttcagacggttccattccgtagcgcgggc	CRISPR spacer
tccttcagacggttccattctgtagcgcgggc	Protospacer
********************.***********

9. spacer 1.10|2148795|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.938

gcatcggtggcgctggccagttcaaaaatacg	CRISPR spacer
gcatcggtagcactggccagttcaaaaatacg	Protospacer
********.**.********************

10. spacer 1.15|2149100|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 2, identity: 0.938

atcgcgtgactgaaatatataatcagccagct	CRISPR spacer
atcacgtgactgaaatatataatcagcaagct	Protospacer
***.*********************** ****

11. spacer 1.15|2149100|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

atcgcgtgactgaaatatataatcagccagct	CRISPR spacer
atcacgtgactgaaatatataatcagccagtt	Protospacer
***.**************************.*

12. spacer 1.15|2149100|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

atcgcgtgactgaaatatataatcagccagct	CRISPR spacer
atcacgtgactgaaatatataatcagccagtt	Protospacer
***.**************************.*

13. spacer 2.32|2167044|35|NZ_CP022019|CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 2, identity: 0.943

tactccttcagacggttccattccgtagcgcgggc	CRISPR spacer
cattccttcagacggttccattccgtagcgcgggc	Protospacer
.*.********************************

14. spacer 1.9|2148734|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.906

acgaggactctttaacagacgcccgcgtaacc	CRISPR spacer
gcgaggactcttcaacagacgcccgcgcaacc	Protospacer
.***********.**************.****

15. spacer 1.14|2149039|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to LR597637 (Escherichia phage ESSI2_ev239 genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.906

cgttcgacgtgggagaacgaaaatacgctgtc	CRISPR spacer
ttttcgacgcgggagaacgaaaatacgctgtc	Protospacer
. *******.**********************

16. spacer 2.23|2166495|35|NZ_CP022019|CRT,PILER-CR matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.914

cactaagtcgctgggcataagcaagaacgcaattg	CRISPR spacer
gagtcagtcgctgggcataagcaagaacgcaattg	Protospacer
 * * ******************************

17. spacer 2.32|2167044|35|NZ_CP022019|CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.914

tactccttcagacggttccattccgtagcgcgggc	CRISPR spacer
cattccttcagacggttccattctgtagcgcgggc	Protospacer
.*.********************.***********

18. spacer 2.32|2167044|35|NZ_CP022019|CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.914

tactccttcagacggttccattccgtagcgcgggc	CRISPR spacer
cattccttcagacggttccattctgtagcgcgggc	Protospacer
.*.********************.***********

19. spacer 1.12|2148917|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to MK804891 (Aeromonas phage 2_D05, complete genome) position: , mismatch: 6, identity: 0.812

acattccatcatttcatccagcagtggacggg	CRISPR spacer
acaggacatcatttcgtccagaagtggacgcg	Protospacer
***   *********.***** ******** *

20. spacer 1.12|2148917|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to MK804892 (Aeromonas phage 4_D05, complete genome) position: , mismatch: 6, identity: 0.812

acattccatcatttcatccagcagtggacggg	CRISPR spacer
acaggacatcatttcgtccagaagtggacgcg	Protospacer
***   *********.***** ******** *

21. spacer 1.12|2148917|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to MH179474 (Aeromonas phage 62AhydR11PP, complete genome) position: , mismatch: 6, identity: 0.812

acattccatcatttcatccagcagtggacggg	CRISPR spacer
acaggacatcatttcgtccagaagtggacgtg	Protospacer
***   *********.***** ******** *

22. spacer 2.6|2166437|32|NZ_CP022019|CRISPRCasFinder matches to MH001450 (Mycobacterium phage Jeon, complete genome) position: , mismatch: 6, identity: 0.812

tgaggcgctggcagacccggagtgtttgaaat	CRISPR spacer
tgaggagctggaagacccggagtggatggact	Protospacer
***** ***** ************  **.* *

23. spacer 1.4|2148429|32|NZ_CP022019|CRISPRCasFinder,CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcataggtcagcgaaatatcgtttttcagcgt-	CRISPR spacer
atataggtcagcaaaatatcg-ctttcgccatc	Protospacer
..**********.******** .****. *.*

24. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MT080601 (UNVERIFIED: Staphylococcus phage vB_SauM_EW72, complete genome) position: , mismatch: 8, identity: 0.75

tttaactattcataaaatagacagagttgttt	CRISPR spacer
tttaactattgatagaatagacaataatggta	Protospacer
********** ***.********. . ** *

25. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MT080585 (UNVERIFIED: Staphylococcus phage vB_SauM_EW18, complete genome) position: , mismatch: 8, identity: 0.75

tttaactattcataaaatagacagagttgttt	CRISPR spacer
tttaactattgatagaatagacaataatggta	Protospacer
********** ***.********. . ** *

26. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MT080591 (UNVERIFIED: Staphylococcus phage vB_SauM_EW29, complete genome) position: , mismatch: 8, identity: 0.75

tttaactattcataaaatagacagagttgttt	CRISPR spacer
tttaactattgatagaatagacaataatggta	Protospacer
********** ***.********. . ** *

27. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MT080589 (UNVERIFIED: Staphylococcus phage vB_SauM_EW26, complete genome) position: , mismatch: 8, identity: 0.75

tttaactattcataaaatagacagagttgttt	CRISPR spacer
tttaactattgatagaatagacaataatggta	Protospacer
********** ***.********. . ** *

28. spacer 1.15|2149100|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 8, identity: 0.75

atcgcgtgactgaaatatataatcagccagct	CRISPR spacer
ttgttgtcactgaaatatataatcatccaatt	Protospacer
 *  .** ***************** ***..*

29. spacer 1.16|2149161|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to MN693424 (Marine virus AFVG_25M201, complete genome) position: , mismatch: 8, identity: 0.75

gtggtggtagtggtgggaatatgtttaaccag	CRISPR spacer
gtggaggtagtggtgtgaatatgtggtattat	Protospacer
**** ********** ********   *..*

30. spacer 2.7|2166498|32|NZ_CP022019|CRISPRCasFinder matches to NZ_CP028385 (Providencia heimbachae strain 99101 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

taagtcgctgggcataagcaagaacgcaattg	CRISPR spacer
cgatacccagggcgtaagccagaacgcaattg	Protospacer
..*  * * ****.***** ************

31. spacer 2.8|2166559|32|NZ_CP022019|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

accatcccccggactgagcggcgctacggccg---	CRISPR spacer
accatcccccggcttgagcggcg---tgctcgaac	Protospacer
************ .*********   .* .**

32. spacer 2.13|2166864|32|NZ_CP022019|CRISPRCasFinder,PILER-CR matches to JX469827 (Uncultured bacterium plasmid pEMT3, complete sequence) position: , mismatch: 8, identity: 0.75

gatgtggtgcggggtggtggt-ggattacgtac	CRISPR spacer
gaagtggtgcagggtggtggtggggttatccg-	Protospacer
** *******.********** **.***. ..

33. spacer 2.13|2166864|32|NZ_CP022019|CRISPRCasFinder,PILER-CR matches to JN106170 (Uncultured bacterium plasmid pAKD25, complete sequence) position: , mismatch: 8, identity: 0.75

gatgtggtgcggggtggtggt-ggattacgtac	CRISPR spacer
gaagtggtgcagggtggtggtggggttatccg-	Protospacer
** *******.********** **.***. ..

34. spacer 2.13|2166864|32|NZ_CP022019|CRISPRCasFinder,PILER-CR matches to JN106175 (Uncultured bacterium plasmid pAKD34, complete sequence) position: , mismatch: 8, identity: 0.75

gatgtggtgcggggtggtggt-ggattacgtac	CRISPR spacer
gaagtggtgcagggtggtggtggggttatccg-	Protospacer
** *******.********** **.***. ..

35. spacer 2.13|2166864|32|NZ_CP022019|CRISPRCasFinder,PILER-CR matches to JN106167 (Uncultured bacterium plasmid pAKD16, complete sequence) position: , mismatch: 8, identity: 0.75

gatgtggtgcggggtggtggt-ggattacgtac	CRISPR spacer
gaagtggtgcagggtggtggtggggttatccg-	Protospacer
** *******.********** **.***. ..

36. spacer 2.13|2166864|32|NZ_CP022019|CRISPRCasFinder,PILER-CR matches to NC_019318 (Ralstonia pickettii plasmid p712, complete sequence) position: , mismatch: 8, identity: 0.75

gatgtggtgcggggtggtggt-ggattacgtac	CRISPR spacer
gaagtggtgcagggtggtggtggggttatccg-	Protospacer
** *******.********** **.***. ..

37. spacer 1.2|2148307|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MT374854 (Yersinia phage vB_YpM_6, complete genome) position: , mismatch: 9, identity: 0.719

ggaggtgatccgggatttaaacaaaatgatta	CRISPR spacer
gataatgacacgggatttaaacaaaatggcga	Protospacer
*. ..***. ******************.. *

38. spacer 1.2|2148307|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MT374853 (Yersinia phage vB_YpM_5, complete genome) position: , mismatch: 9, identity: 0.719

ggaggtgatccgggatttaaacaaaatgatta	CRISPR spacer
gataatgacacgggatttaaacaaaatggcga	Protospacer
*. ..***. ******************.. *

39. spacer 1.5|2148490|32|NZ_CP022019|CRISPRCasFinder,CRT matches to NC_022437 (Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence) position: , mismatch: 9, identity: 0.719

atcccctcgctgtttttctaaggcggcgcgtt	CRISPR spacer
gctacggcgctgtttttcgaagacggcgcgct	Protospacer
... *  *********** ***.*******.*

40. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MN693066 (Marine virus AFVG_25M551, complete genome) position: , mismatch: 9, identity: 0.719

tttaactattcataaaatagacagagttgttt	CRISPR spacer
acgcccacttcataaaaacgacagagttgttt	Protospacer
 .   *  *********  *************

41. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MN693345 (Marine virus AFVG_25M552, complete genome) position: , mismatch: 9, identity: 0.719

tttaactattcataaaatagacagagttgttt	CRISPR spacer
acgcccacttcataaaaacgacagagttgttt	Protospacer
 .   *  *********  *************

42. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MN693995 (Marine virus AFVG_250M873, complete genome) position: , mismatch: 9, identity: 0.719

tttaactattcataaaatagacagagttgttt	CRISPR spacer
agtaggtattcataaaacagacaaagttgaag	Protospacer
  **. ***********.*****.*****

43. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MN693610 (Marine virus AFVG_250M347, complete genome) position: , mismatch: 9, identity: 0.719

tttaactattcataaaatagacagagttgttt	CRISPR spacer
agtaggtattcataaaacagacaaagttgaag	Protospacer
  **. ***********.*****.*****

44. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MN693983 (Marine virus AFVG_250M348, complete genome) position: , mismatch: 9, identity: 0.719

tttaactattcataaaatagacagagttgttt	CRISPR spacer
agtaggtattcataaaacagacaaagttgaag	Protospacer
  **. ***********.*****.*****

45. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MN694535 (Marine virus AFVG_250M1087, complete genome) position: , mismatch: 9, identity: 0.719

tttaactattcataaaatagacagagttgttt	CRISPR spacer
agtaggtattcataaaacagacaaagttgaag	Protospacer
  **. ***********.*****.*****

46. spacer 1.7|2148612|32|NZ_CP022019|CRISPRCasFinder,CRT matches to MN694384 (Marine virus AFVG_250M349, complete genome) position: , mismatch: 9, identity: 0.719

tttaactattcataaaatagacagagttgttt	CRISPR spacer
agtaggtattcataaaacagacaaagttgaag	Protospacer
  **. ***********.*****.*****

47. spacer 1.10|2148795|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

gcatcggtggcgctggccagttcaaaaatacg	CRISPR spacer
attgcggtggcgacggccagttcaaaaaaatt	Protospacer
..  ******** .************** *.

48. spacer 2.3|2166254|32|NZ_CP022019|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.719

gggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
ttaaactggcaatagaacaaataaaaaaagat	Protospacer
  . ****.****** *************.

49. spacer 2.3|2166254|32|NZ_CP022019|CRISPRCasFinder matches to KX156762 (Staphylococcus phage vB_SauS_IMEP5, complete genome) position: , mismatch: 9, identity: 0.719

gggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
cgtgtttgacacttgtacaaataaaaaaagag	Protospacer
 *   .***** * ***************. *

50. spacer 2.5|2166376|32|NZ_CP022019|CRISPRCasFinder matches to NC_015851 (Acidithiobacillus caldus SM-1 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ggttttggctatctgagcggcgtccgccgccg	CRISPR spacer
atcgcctgctatctgagcggcttccgccgccc	Protospacer
. . .. ************** *********

51. spacer 2.29|2166861|35|NZ_CP022019|CRT matches to JX469827 (Uncultured bacterium plasmid pEMT3, complete sequence) position: , mismatch: 9, identity: 0.743

tacgatgtggtgcggggtggtggt-ggattacgtac	CRISPR spacer
gacgaagtggtgcagggtggtggtggggttatccg-	Protospacer
 **** *******.********** **.***. ..

52. spacer 2.29|2166861|35|NZ_CP022019|CRT matches to NC_019318 (Ralstonia pickettii plasmid p712, complete sequence) position: , mismatch: 9, identity: 0.743

tacgatgtggtgcggggtggtggt-ggattacgtac	CRISPR spacer
gacgaagtggtgcagggtggtggtggggttatccg-	Protospacer
 **** *******.********** **.***. ..

53. spacer 1.11|2148856|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028385 (Providencia heimbachae strain 99101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gcggtagtattttttagcaggtgcgtcgtgcc	CRISPR spacer
caggttttattttttagcaggtgcggcagctg	Protospacer
  ***  ****************** *.  .

54. spacer 2.3|2166254|32|NZ_CP022019|CRISPRCasFinder matches to NZ_CP032824 (Arcobacter cryaerophilus ATCC 43158 plasmid pACRY43158, complete sequence) position: , mismatch: 10, identity: 0.688

gggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
aaaaaaagacattagtaaaaataaaaaaaata	Protospacer
... *  **** ***** ************..

55. spacer 2.3|2166254|32|NZ_CP022019|CRISPRCasFinder matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
tattgttgacaatagtcaaaataaaaaaagaa	Protospacer
 . *..**********  ***********. .

56. spacer 2.9|2166620|32|NZ_CP022019|CRISPRCasFinder matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 10, identity: 0.688

agattcatacaagtcctacagtaaaagtgctc	CRISPR spacer
ccccggagacaaggccgacagtaaaagtgctg	Protospacer
   .  * ***** ** **************

57. spacer 1.16|2149161|32|NZ_CP022019|CRISPRCasFinder,CRT,PILER-CR matches to MK494099 (Mycobacterium phage Typha, complete genome) position: , mismatch: 11, identity: 0.656

gtggtggtagtggtgggaatatgtttaaccag	CRISPR spacer
tgggtggtggtggtgggaatgtgttggggggc	Protospacer
  ******.***********.**** ..  .

58. spacer 2.19|2166251|35|NZ_CP022019|CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 11, identity: 0.686

cacgggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
ctattaaactggcaatagaacaaataaaaaaagat	Protospacer
*    . ****.****** *************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

475074 : 483352

Escherichia_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000444508.1\|475074_476325_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_023136605.1\|476772_477897_+	type III secretion system effector SopF	NA	NA	NA	NA
WP_000275697.1\|478941_479355_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	3.2e-19	37.7
WP_000733630.1\|479371_480100_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.6e-61	52.5
WP_000158845.1\|480283_480826_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001277616.1\|480973_481351_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_001529135.1\|481423_482233_-	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_000497451.1\|483112_483352_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

DBSCAN-SWA_2

1251460 : 1258727

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088523943.1\|1251460_1252891_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	58.1
WP_000377042.1\|1252964_1253660_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107432.1\|1253751_1254051_-	hypothetical protein	NA	NA	NA	NA
WP_023217297.1\|1254700_1255912_+	porin OmpC	Q1MVN1	Enterobacteria_phage	2.0e-109	56.2
WP_024131109.1\|1256170_1256359_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|1256369_1256582_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457654.1\|1257036_1258305_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.9e-227	92.2
WP_000394197.1\|1258307_1258727_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_3

1449591 : 1458763

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195345.1\|1449591_1451625_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703136.1\|1451866_1452325_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
WP_001221798.1\|1452496_1453027_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|1453083_1453551_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|1453597_1454317_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|1454313_1455999_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240418.1\|1456221_1456953_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|1457012_1457120_+	protein YohO	NA	NA	NA	NA
WP_000824858.1\|1457100_1457832_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|1457815_1458763_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_4

3462730 : 3506164

Burkholderia_phage(47.37%)

tail,plate,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088524135.1\|3462730_3463432_-	DUF4376 domain-containing protein	X2KPE1	Enterobacteria_phage	1.6e-23	38.7
WP_000368199.1\|3463434_3464895_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.3e-78	39.5
WP_000359501.1\|3464897_3465530_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_088524136.1\|3465522_3466638_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.9e-103	53.3
WP_001093501.1\|3466628_3466988_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_088524137.1\|3467086_3467809_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	2.3e-12	42.0
WP_088524138.1\|3467818_3468862_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_001269717.1\|3468849_3469059_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_088524139.1\|3469058_3470012_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	3.0e-36	50.8
WP_088524140.1\|3470011_3472378_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.5e-70	31.3
WP_001185654.1\|3472471_3472600_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_088524141.1\|3472559_3472877_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_088524142.1\|3472928_3473453_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	4.0e-67	69.0
WP_080194649.1\|3473452_3474877_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	8.3e-184	68.5
WP_088524143.1\|3474866_3475064_-	hypothetical protein	Q6QIB1	Burkholderia_phage	3.0e-07	54.9
WP_088524144.1\|3475060_3475516_-	Gp37 family protein	NA	NA	NA	NA
WP_000777266.1\|3475675_3475990_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_088524145.1\|3476002_3476608_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.8e-58	59.4
WP_001226439.1\|3476610_3476898_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
WP_000615248.1\|3477474_3477822_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_000136392.1\|3477953_3479303_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000790032.1\|3479690_3481340_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_001541297.1\|3481783_3482026_+	outer membrane protein	NA	NA	NA	NA
WP_001663266.1\|3482059_3482728_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_000977973.1\|3482724_3483462_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_079965662.1\|3483461_3485558_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_000982752.1\|3485700_3486111_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001091898.1\|3486156_3487632_-	D-xylose transporter XylE	NA	NA	NA	NA
WP_001252081.1\|3487951_3488842_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000382573.1\|3488856_3490401_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_079965663.1\|3490532_3491723_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000179176.1\|3492084_3493194_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000973678.1\|3493282_3494641_+	maltoporin	NA	NA	NA	NA
WP_000782497.1\|3494804_3495722_+	maltose operon protein MalM	NA	NA	NA	NA
WP_000019217.1\|3495902_3496400_+	chorismate lyase	NA	NA	NA	NA
WP_000455249.1\|3496413_3497286_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_001631823.1\|3497384_3499805_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002900.1\|3499975_3500344_+	diacylglycerol kinase	NA	NA	NA	NA
WP_088524146.1\|3500452_3501061_+	repressor LexA	Q9G0C2	Lactococcus_phage	2.7e-14	38.9
WP_001128113.1\|3501239_3502565_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_001575282.1\|3502561_3502675_+	hypothetical protein	NA	NA	NA	NA
WP_001030592.1\|3502696_3502906_+	CsbD family protein	NA	NA	NA	NA
WP_000416271.1\|3503005_3503521_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_088524147.1\|3503767_3505078_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_088524148.1\|3505165_3506164_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022019

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection