CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022077	Campylobacter jejuni strain FDAARGOS_263 chromosome, complete genome	2 crisprs	cas1,cas2,cas14j,WYL,DEDDh	0	12	1	0

1. NZ_CP022077

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022077_1

• CRISPR_ID: NZ_CP022077_1
• CRISPR_location: 104057-104357
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 4 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NZ_CP022077_1

Consensus_repeat	Method
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAA	PILER-CR
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	CRISPRCasFinder
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACA	CRT

spacers of NZ_CP022077_1

>1.1|104092|31|NZ_CP022077|PILER-CR
CATTTAAGTCCATTTTTTTTAGCACACTCAT
>1.2|104158|31|NZ_CP022077|PILER-CR
CTGTAAAATATCATCATCCTCATTCTTGTAG
>1.3|104224|31|NZ_CP022077|PILER-CR
CAGTTAAATTCAACTAATGAAACTTTGGAAA
>1.4|104290|31|NZ_CP022077|PILER-CR
CAACCGCCAAGCTCTTTTAAAAACTGCCATA
>1.5|104093|30|NZ_CP022077|CRISPRCasFinder
ATTTAAGTCCATTTTTTTTAGCACACTCAT
>1.6|104159|30|NZ_CP022077|CRISPRCasFinder
TGTAAAATATCATCATCCTCATTCTTGTAG
>1.7|104225|30|NZ_CP022077|CRISPRCasFinder
AGTTAAATTCAACTAATGAAACTTTGGAAA
>1.8|104291|30|NZ_CP022077|CRISPRCasFinder
AACCGCCAAGCTCTTTTAAAAACTGCCATA
>1.9|104094|29|NZ_CP022077|CRT
TTTAAGTCCATTTTTTTTAGCACACTCAT
>1.10|104160|29|NZ_CP022077|CRT
GTAAAATATCATCATCCTCATTCTTGTAG
>1.11|104226|29|NZ_CP022077|CRT
GTTAAATTCAACTAATGAAACTTTGGAAA
>1.12|104292|29|NZ_CP022077|CRT
ACCGCCAAGCTCTTTTAAAAACTGCCATA

CRISPR arrays and Neighbor proteins around NZ_CP022077_1

CRISPR arrays

The CRISPR arrays of NZ_CP022077_1

>merge|NZ_CP022077|1|104057-104357|PILER-CR,CRISPRCasFinder,CRT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACATTTAAGTCCATTTTTTTTAGCACACTCATATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACTGTAAAATATCATCATCCTCATTCTTGTAGATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACAGTTAAATTCAACTAATGAAACTTTGGAAAATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACAACCGCCAAGCTCTTTTAAAAACTGCCATAATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATA

>NZ_CP022077|1|1|104057-104355|PILER-CR
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAA	CATTTAAGTCCATTTTTTTTAGCACACTCAT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAA	CTGTAAAATATCATCATCCTCATTCTTGTAG
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAA	CAGTTAAATTCAACTAATGAAACTTTGGAAA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAA	CAACCGCCAAGCTCTTTTAAAAACTGCCATA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAA

>NZ_CP022077|1|1|104057-104356|CRISPRCasFinder
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	ATTTAAGTCCATTTTTTTTAGCACACTCAT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TGTAAAATATCATCATCCTCATTCTTGTAG
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	AGTTAAATTCAACTAATGAAACTTTGGAAA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	AACCGCCAAGCTCTTTTAAAAACTGCCATA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAT

>NZ_CP022077|1|1|104057-104357|CRT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACA	TTTAAGTCCATTTTTTTTAGCACACTCAT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACT	GTAAAATATCATCATCCTCATTCTTGTAG
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACA	GTTAAATTCAACTAATGAAACTTTGGAAA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACA	ACCGCCAAGCTCTTTTAAAAACTGCCATA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022077.1|WP_170876396.1|103498_103912_+|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_CP022077.1|WP_002797819.1|102597_103488_+|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|187851
NZ_CP022077.1|WP_002851535.1|110926_113140_+|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl|CDD|239153
NZ_CP022077.1|WP_002781229.1|105669_106116_-|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|223391
NZ_CP022077.1|WP_002851173.1|95575_96325_-|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_CP022077.1|WP_002858151.1|104475_105666_-|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|223380
NZ_CP022077.1|WP_002851546.1|93321_93771_+|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NZ_CP022077.1|WP_002803271.1|110335_110878_+|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239153
NZ_CP022077.1|WP_002857949.1|106116_106338_-|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|224888
NZ_CP022077.1|WP_002851155.1|93835_94873_+|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
NZ_CP022077.1|WP_002851502.1|109456_110170_+|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl|CDD|225916
NZ_CP022077.1|WP_002855462.1|91971_93192_+|glucose-6-phosphate-isomerase	unknown	unknown	gnl|CDD|235168
NZ_CP022077.1|WP_002851264.1|113136_113778_+|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NZ_CP022077.1|WP_002851320.1|96987_97977_+|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NZ_CP022077.1|WP_002851537.1|110144_110336_+|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|236534
NZ_CP022077.1|WP_002864485.1|99646_102601_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226044
NZ_CP022077.1|WP_002858431.1|108004_109153_+|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NZ_CP022077.1|WP_002858205.1|106339_107881_-|multicopper-oxidase-CueO	unknown	unknown	gnl|CDD|225043
NZ_CP022077.1|WP_002851523.1|96321_96927_-|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620
NZ_CP022077.1|WP_002851407.1|94869_95601_-|glucosaminidase-domain-containing-protein	unknown	unknown	gnl|CDD|225539

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP022077.1|WP_170876396.1|103498_103912_+|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	3.5e-55	179.9	0.7
NZ_CP022077.1|WP_002797819.1|102597_103488_+|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	5.4e-99	325.5	10.2
NZ_CP022077.1|WP_002864485.1|99646_102601_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	0	1184.9	71.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP022077.1|WP_170876396.1|103498_103912_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.67561e-55
NZ_CP022077.1|WP_002797819.1|102597_103488_+|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
NZ_CP022077.1|WP_002851535.1|110926_113140_+|formate-dehydrogenase-subunit-alpha	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	3.43977e-154
NZ_CP022077.1|WP_002781229.1|105669_106116_-|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP022077.1|WP_002851173.1|95575_96325_-|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.97072e-93
NZ_CP022077.1|WP_002858151.1|104475_105666_-|molybdopterin-molybdotransferase-MoeA	gnl|CDD|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NZ_CP022077.1|WP_002851546.1|93321_93771_+|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP022077.1|WP_002803271.1|110335_110878_+|molybdopterin-dependent-oxidoreductase	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	9.0213e-62
NZ_CP022077.1|WP_002857949.1|106116_106338_-|MoaD/ThiS-family-protein	gnl|CDD|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	2.76562e-11
NZ_CP022077.1|WP_002851155.1|93835_94873_+|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
NZ_CP022077.1|WP_002851502.1|109456_110170_+|molecular-chaperone-TorD-family-protein	gnl|CDD|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP022077.1|WP_002855462.1|91971_93192_+|glucose-6-phosphate-isomerase	gnl|CDD|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP022077.1|WP_002851264.1|113136_113778_+|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP022077.1|WP_002851320.1|96987_97977_+|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP022077.1|WP_002851537.1|110144_110336_+|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP022077.1|WP_002864485.1|99646_102601_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP022077.1|WP_002858431.1|108004_109153_+|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP022077.1|WP_002858205.1|106339_107881_-|multicopper-oxidase-CueO	gnl|CDD|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.73566e-121
NZ_CP022077.1|WP_002851523.1|96321_96927_-|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.24929e-70
NZ_CP022077.1|WP_002851407.1|94869_95601_-|glucosaminidase-domain-containing-protein	gnl|CDD|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102

Protein sequences

>NZ_CP022077.1|WP_170876396.1|103498_103912_+|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP022077.1|WP_002797819.1|102597_103488_+|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP022077.1|WP_002864485.1|99646_102601_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLVTPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKNFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP022077.1|WP_002851320.1|96987_97977_+|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>NZ_CP022077.1|WP_002851523.1|96321_96927_-|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM
>NZ_CP022077.1|WP_002851173.1|95575_96325_-|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>NZ_CP022077.1|WP_002851407.1|94869_95601_-|glucosaminidase-domain-containing-protein
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP022077.1|WP_002851155.1|93835_94873_+|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP022077.1|WP_002851546.1|93321_93771_+|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP022077.1|WP_002855462.1|91971_93192_+|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS
>NZ_CP022077.1|WP_002858151.1|104475_105666_-|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP022077.1|WP_002781229.1|105669_106116_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP022077.1|WP_002857949.1|106116_106338_-|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFNENTKLKDGDKIALLPPVCGG
>NZ_CP022077.1|WP_002858205.1|106339_107881_-|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP022077.1|WP_002858431.1|108004_109153_+|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP022077.1|WP_002851502.1|109456_110170_+|molecular-chaperone-TorD-family-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP022077.1|WP_002851537.1|110144_110336_+|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP022077.1|WP_002803271.1|110335_110878_+|molybdopterin-dependent-oxidoreductase
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARI
>NZ_CP022077.1|WP_002851535.1|110926_113140_+|formate-dehydrogenase-subunit-alpha
MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP022077.1|WP_002851264.1|113136_113778_+|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL

Crispr_ID: NZ_CP022077_2

• CRISPR_ID: NZ_CP022077_2
• CRISPR_location: 220023-220102
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP022077_2

Consensus_repeat	Method
GATGCTTTAAAAGAACAAAAAGA	CRISPRCasFinder

spacers of NZ_CP022077_2

>2.1|220046|34|NZ_CP022077|CRISPRCasFinder
TTATATGAGCAAGGCTGAGTATAAAGCTAAAAAA

CRISPR arrays and Neighbor proteins around NZ_CP022077_2

CRISPR arrays

The CRISPR arrays of NZ_CP022077_2

>merge|NZ_CP022077|2|220023-220102|CRISPRCasFinder
GATGCTTTAAAAGAACAAAAAGATTATATGAGCAAGGCTGAGTATAAAGCTAAAAAAGAAGCTTTAAAAGAACAAAAAGA

>NZ_CP022077|2|2|220023-220102|CRISPRCasFinder
GATGCTTTAAAAGAACAAAAAGA	TTATATGAGCAAGGCTGAGTATAAAGCTAAAAAA
GAAGCTTTAAAAGAACAAAAAGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022077.1|WP_002779147.1|228166_228391_-|ferrous-iron-transport-protein-A	unknown	unknown	gnl|CDD|224830
NZ_CP022077.1|WP_002780456.1|224010_224835_+|enoyl-ACP-reductase-FabI	unknown	unknown	gnl|CDD|181416
NZ_CP022077.1|WP_002780442.1|217693_218230_-|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl|CDD|181433
NZ_CP022077.1|WP_002857891.1|211127_213197_+|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl|CDD|226093
NZ_CP022077.1|WP_010891932.1|222136_223339_+|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NZ_CP022077.1|WP_002865443.1|226328_228170_-|ferrous-iron-transport-protein-B	unknown	unknown	gnl|CDD|223447
NZ_CP022077.1|WP_002780438.1|215568_216930_+|cytochrome-P450	unknown	unknown	gnl|CDD|225035
NZ_CP022077.1|WP_002780453.1|221135_222134_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NZ_CP022077.1|WP_002780449.1|220530_221076_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|223985
NZ_CP022077.1|WP_002857981.1|213193_214378_+|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl|CDD|226092
NZ_CP022077.1|WP_010891933.1|218332_219721_+|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl|CDD|100091
NZ_CP022077.1|WP_002858404.1|209867_210629_+|CTP:phosphoglutamine-cytidylyltransferase	unknown	unknown	gnl|CDD|224134
NZ_CP022077.1|WP_002858238.1|220176_220503_-|ribosome-silencing-factor	unknown	unknown	gnl|CDD|223870
NZ_CP022077.1|WP_002857939.1|217346_217694_-|holo-ACP-synthase	unknown	unknown	gnl|CDD|223807
NZ_CP022077.1|WP_002780440.1|216926_217346_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP022077.1|WP_002855528.1|223335_224007_+|triose-phosphate-isomerase	unknown	unknown	gnl|CDD|234589
NZ_CP022077.1|WP_002858304.1|214450_215572_+|membrane-protein	unknown	unknown	unknown
NZ_CP022077.1|WP_002858462.1|210618_211131_+|adenylyl-sulfate-kinase	unknown	unknown	gnl|CDD|235498
NZ_CP022077.1|WP_002857989.1|229821_231189_-|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|176469
NZ_CP022077.1|WP_002858455.1|224838_226332_+|hydrogenase-small-subunit	unknown	unknown	gnl|CDD|224654

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP022077.1|WP_002779147.1|228166_228391_-|ferrous-iron-transport-protein-A	gnl|CDD|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP022077.1|WP_002780456.1|224010_224835_+|enoyl-ACP-reductase-FabI	gnl|CDD|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP022077.1|WP_002780442.1|217693_218230_-|flagellar-basal-body-associated-protein-FliL	gnl|CDD|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.30474e-91
NZ_CP022077.1|WP_002857891.1|211127_213197_+|capsular-polysaccharide-biosynthesis-protein	gnl|CDD|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP022077.1|WP_002865443.1|226328_228170_-|ferrous-iron-transport-protein-B	gnl|CDD|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP022077.1|WP_002780438.1|215568_216930_+|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79
NZ_CP022077.1|WP_002780453.1|221135_222134_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NZ_CP022077.1|WP_002780449.1|220530_221076_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl|CDD|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.69536e-59
NZ_CP022077.1|WP_002857981.1|213193_214378_+|capsule-polysaccharide-modification-protein-KpsS	gnl|CDD|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP022077.1|WP_010891933.1|218332_219721_+|phosphoglucosamine-mutase-PgmL	gnl|CDD|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP022077.1|WP_002858404.1|209867_210629_+|CTP:phosphoglutamine-cytidylyltransferase	gnl|CDD|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	3.82934e-76
NZ_CP022077.1|WP_002858238.1|220176_220503_-|ribosome-silencing-factor	gnl|CDD|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.85906e-37
NZ_CP022077.1|WP_002857939.1|217346_217694_-|holo-ACP-synthase	gnl|CDD|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	7.85738e-40
NZ_CP022077.1|WP_010891932.1|222136_223339_+|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP022077.1|WP_002855528.1|223335_224007_+|triose-phosphate-isomerase	gnl|CDD|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NZ_CP022077.1|WP_002858462.1|210618_211131_+|adenylyl-sulfate-kinase	gnl|CDD|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.00012e-100
NZ_CP022077.1|WP_002857989.1|229821_231189_-|adenylosuccinate-lyase	gnl|CDD|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NZ_CP022077.1|WP_002858455.1|224838_226332_+|hydrogenase-small-subunit	gnl|CDD|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.777e-157

Protein sequences

>NZ_CP022077.1|WP_010891933.1|218332_219721_+|phosphoglucosamine-mutase-PgmL
MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNRGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDIKARFKN
>NZ_CP022077.1|WP_002780442.1|217693_218230_-|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP022077.1|WP_002857939.1|217346_217694_-|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLNPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAVV
>NZ_CP022077.1|WP_002780440.1|216926_217346_+|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_CP022077.1|WP_002780438.1|215568_216930_+|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP022077.1|WP_002858304.1|214450_215572_+|membrane-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP022077.1|WP_002857981.1|213193_214378_+|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYFKLINDLSRKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYNFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP022077.1|WP_002857891.1|211127_213197_+|capsular-polysaccharide-biosynthesis-protein
MKYYSISKKLIANVRNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLLNTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDNYFQKDEKRVLIITQTANDASLEFGLAKDFKTLDMIKDAIKENPKSTIYIKIHPDVLSGKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNKLFMLGFTLWKRHFIKPFFKAKDNEIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRIRKLSLEELVAGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP022077.1|WP_002858462.1|210618_211131_+|adenylyl-sulfate-kinase
MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NZ_CP022077.1|WP_002858404.1|209867_210629_+|CTP:phosphoglutamine-cytidylyltransferase
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWCKLWSKRFANPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK
>NZ_CP022077.1|WP_002858238.1|220176_220503_-|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP022077.1|WP_002780449.1|220530_221076_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP022077.1|WP_002780453.1|221135_222134_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP022077.1|WP_010891932.1|222136_223339_+|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP022077.1|WP_002855528.1|223335_224007_+|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP022077.1|WP_002780456.1|224010_224835_+|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP022077.1|WP_002858455.1|224838_226332_+|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIVAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS
>NZ_CP022077.1|WP_002865443.1|226328_228170_-|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFQPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NZ_CP022077.1|WP_002779147.1|228166_228391_-|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP022077.1|WP_002857989.1|229821_231189_-|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKNSAILK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022077_1	1.5|104093|30|NZ_CP022077|CRISPRCasFinder	104093-104122	30	MN530981	Campylobacter phage DA10, complete genome	4834-4863	0	1.0
NZ_CP022077_1	1.6|104159|30|NZ_CP022077|CRISPRCasFinder	104159-104188	30	MN530981	Campylobacter phage DA10, complete genome	30556-30585	0	1.0
NZ_CP022077_1	1.7|104225|30|NZ_CP022077|CRISPRCasFinder	104225-104254	30	MN530981	Campylobacter phage DA10, complete genome	33283-33312	0	1.0
NZ_CP022077_1	1.8|104291|30|NZ_CP022077|CRISPRCasFinder	104291-104320	30	MN530981	Campylobacter phage DA10, complete genome	5259-5288	0	1.0
NZ_CP022077_1	1.9|104094|29|NZ_CP022077|CRT	104094-104122	29	MN530981	Campylobacter phage DA10, complete genome	4835-4863	0	1.0
NZ_CP022077_1	1.10|104160|29|NZ_CP022077|CRT	104160-104188	29	MN530981	Campylobacter phage DA10, complete genome	30557-30585	0	1.0
NZ_CP022077_1	1.11|104226|29|NZ_CP022077|CRT	104226-104254	29	MN530981	Campylobacter phage DA10, complete genome	33283-33311	0	1.0
NZ_CP022077_1	1.12|104292|29|NZ_CP022077|CRT	104292-104320	29	MN530981	Campylobacter phage DA10, complete genome	5260-5288	0	1.0
NZ_CP022077_1	1.1|104092|31|NZ_CP022077|PILER-CR	104092-104122	31	MN530981	Campylobacter phage DA10, complete genome	4833-4863	1	0.968
NZ_CP022077_1	1.2|104158|31|NZ_CP022077|PILER-CR	104158-104188	31	MN530981	Campylobacter phage DA10, complete genome	30555-30585	1	0.968
NZ_CP022077_1	1.3|104224|31|NZ_CP022077|PILER-CR	104224-104254	31	MN530981	Campylobacter phage DA10, complete genome	33283-33313	1	0.968
NZ_CP022077_1	1.4|104290|31|NZ_CP022077|PILER-CR	104290-104320	31	MN530981	Campylobacter phage DA10, complete genome	5258-5288	1	0.968
NZ_CP022077_1	1.6|104159|30|NZ_CP022077|CRISPRCasFinder	104159-104188	30	KX229736	Campylobacter phage PC5, complete genome	24059-24088	2	0.933
NZ_CP022077_1	1.10|104160|29|NZ_CP022077|CRT	104160-104188	29	KX229736	Campylobacter phage PC5, complete genome	24059-24087	2	0.931
NZ_CP022077_1	1.2|104158|31|NZ_CP022077|PILER-CR	104158-104188	31	KX229736	Campylobacter phage PC5, complete genome	24059-24089	3	0.903
NZ_CP022077_1	1.9|104094|29|NZ_CP022077|CRT	104094-104122	29	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	223774-223802	6	0.793
NZ_CP022077_1	1.5|104093|30|NZ_CP022077|CRISPRCasFinder	104093-104122	30	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	223774-223803	7	0.767
NZ_CP022077_1	1.11|104226|29|NZ_CP022077|CRT	104226-104254	29	MG602477	Bacillus phage BCP01, complete genome	154164-154192	7	0.759
NZ_CP022077_1	1.11|104226|29|NZ_CP022077|CRT	104226-104254	29	KX495186	Bacillus phage PK16, complete genome	23958-23986	7	0.759
NZ_CP022077_1	1.12|104292|29|NZ_CP022077|CRT	104292-104320	29	MG676225	Aeromonas phage AhSzw-1, complete genome	109812-109840	7	0.759
NZ_CP022077_1	1.3|104224|31|NZ_CP022077|PILER-CR	104224-104254	31	KX495186	Bacillus phage PK16, complete genome	23956-23986	8	0.742
NZ_CP022077_1	1.3|104224|31|NZ_CP022077|PILER-CR	104224-104254	31	MG602477	Bacillus phage BCP01, complete genome	154164-154194	8	0.742
NZ_CP022077_1	1.5|104093|30|NZ_CP022077|CRISPRCasFinder	104093-104122	30	NC_029073	Geobacillus virus E3, complete genome	3146-3175	8	0.733
NZ_CP022077_1	1.7|104225|30|NZ_CP022077|CRISPRCasFinder	104225-104254	30	MG602477	Bacillus phage BCP01, complete genome	154164-154193	8	0.733
NZ_CP022077_1	1.7|104225|30|NZ_CP022077|CRISPRCasFinder	104225-104254	30	KX495186	Bacillus phage PK16, complete genome	23957-23986	8	0.733
NZ_CP022077_1	1.8|104291|30|NZ_CP022077|CRISPRCasFinder	104291-104320	30	MG676225	Aeromonas phage AhSzw-1, complete genome	109812-109841	8	0.733
NZ_CP022077_1	1.1|104092|31|NZ_CP022077|PILER-CR	104092-104122	31	NC_029073	Geobacillus virus E3, complete genome	3145-3175	9	0.71

1. spacer 1.5|104093|30|NZ_CP022077|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atttaagtccattttttttagcacactcat	CRISPR spacer
atttaagtccattttttttagcacactcat	Protospacer
******************************

2. spacer 1.6|104159|30|NZ_CP022077|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tgtaaaatatcatcatcctcattcttgtag	CRISPR spacer
tgtaaaatatcatcatcctcattcttgtag	Protospacer
******************************

3. spacer 1.7|104225|30|NZ_CP022077|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

agttaaattcaactaatgaaactttggaaa	CRISPR spacer
agttaaattcaactaatgaaactttggaaa	Protospacer
******************************

4. spacer 1.8|104291|30|NZ_CP022077|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

aaccgccaagctcttttaaaaactgccata	CRISPR spacer
aaccgccaagctcttttaaaaactgccata	Protospacer
******************************

5. spacer 1.9|104094|29|NZ_CP022077|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttaagtccattttttttagcacactcat	CRISPR spacer
tttaagtccattttttttagcacactcat	Protospacer
*****************************

6. spacer 1.10|104160|29|NZ_CP022077|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gtaaaatatcatcatcctcattcttgtag	CRISPR spacer
gtaaaatatcatcatcctcattcttgtag	Protospacer
*****************************

7. spacer 1.11|104226|29|NZ_CP022077|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gttaaattcaactaatgaaactttggaaa	CRISPR spacer
gttaaattcaactaatgaaactttggaaa	Protospacer
*****************************

8. spacer 1.12|104292|29|NZ_CP022077|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

accgccaagctcttttaaaaactgccata	CRISPR spacer
accgccaagctcttttaaaaactgccata	Protospacer
*****************************

9. spacer 1.1|104092|31|NZ_CP022077|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

catttaagtccattttttttagcacactcat	CRISPR spacer
aatttaagtccattttttttagcacactcat	Protospacer
 ******************************

10. spacer 1.2|104158|31|NZ_CP022077|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

ctgtaaaatatcatcatcctcattcttgtag	CRISPR spacer
ttgtaaaatatcatcatcctcattcttgtag	Protospacer
.******************************

11. spacer 1.3|104224|31|NZ_CP022077|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

cagttaaattcaactaatgaaactttggaaa	CRISPR spacer
aagttaaattcaactaatgaaactttggaaa	Protospacer
 ******************************

12. spacer 1.4|104290|31|NZ_CP022077|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

caaccgccaagctcttttaaaaactgccata	CRISPR spacer
taaccgccaagctcttttaaaaactgccata	Protospacer
.******************************

13. spacer 1.6|104159|30|NZ_CP022077|CRISPRCasFinder matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 2, identity: 0.933

tgtaaaatatcatcatcctcattcttgtag	CRISPR spacer
tgtaaaatatcatcattttcattcttgtag	Protospacer
****************..************

14. spacer 1.10|104160|29|NZ_CP022077|CRT matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 2, identity: 0.931

gtaaaatatcatcatcctcattcttgtag	CRISPR spacer
gtaaaatatcatcattttcattcttgtag	Protospacer
***************..************

15. spacer 1.2|104158|31|NZ_CP022077|PILER-CR matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 3, identity: 0.903

ctgtaaaatatcatcatcctcattcttgtag	CRISPR spacer
ttgtaaaatatcatcattttcattcttgtag	Protospacer
.****************..************

16. spacer 1.9|104094|29|NZ_CP022077|CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 6, identity: 0.793

tttaagtccattttttttagcacactcat	CRISPR spacer
tttaagtcaattttttttagctatatctt	Protospacer
******** ************    ** *

17. spacer 1.5|104093|30|NZ_CP022077|CRISPRCasFinder matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 7, identity: 0.767

atttaagtccattttttttagcacactcat	CRISPR spacer
ttttaagtcaattttttttagctatatctt	Protospacer
 ******** ************    ** *

18. spacer 1.11|104226|29|NZ_CP022077|CRT matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 7, identity: 0.759

gttaaattcaactaatgaaactttggaaa	CRISPR spacer
tttaaattcttctaatgaaactttattat	Protospacer
 ********  *************.  * 

19. spacer 1.11|104226|29|NZ_CP022077|CRT matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 7, identity: 0.759

gttaaattcaactaatgaaactttggaaa	CRISPR spacer
tttaaattcttctaatgaaactttattat	Protospacer
 ********  *************.  * 

20. spacer 1.12|104292|29|NZ_CP022077|CRT matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 7, identity: 0.759

accgccaagctcttttaaaaactgccata	CRISPR spacer
attgtaaagctcttttaaaaactggcagc	Protospacer
*..*. ****************** **  

21. spacer 1.3|104224|31|NZ_CP022077|PILER-CR matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.742

cagttaaattcaactaatgaaactttggaaa	CRISPR spacer
cttttaaattcttctaatgaaactttattat	Protospacer
*  ********  *************.  * 

22. spacer 1.3|104224|31|NZ_CP022077|PILER-CR matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.742

cagttaaattcaactaatgaaactttggaaa	CRISPR spacer
cttttaaattcttctaatgaaactttattat	Protospacer
*  ********  *************.  * 

23. spacer 1.5|104093|30|NZ_CP022077|CRISPRCasFinder matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 8, identity: 0.733

atttaagtccattttttttagcacactcat	CRISPR spacer
attttaatccattttttttagcaatatttc	Protospacer
**** *.****************   *. .

24. spacer 1.7|104225|30|NZ_CP022077|CRISPRCasFinder matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.733

agttaaattcaactaatgaaactttggaaa	CRISPR spacer
ttttaaattcttctaatgaaactttattat	Protospacer
  ********  *************.  * 

25. spacer 1.7|104225|30|NZ_CP022077|CRISPRCasFinder matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.733

agttaaattcaactaatgaaactttggaaa	CRISPR spacer
ttttaaattcttctaatgaaactttattat	Protospacer
  ********  *************.  * 

26. spacer 1.8|104291|30|NZ_CP022077|CRISPRCasFinder matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 8, identity: 0.733

aaccgccaagctcttttaaaaactgccata	CRISPR spacer
cattgtaaagctcttttaaaaactggcagc	Protospacer
 *..*. ****************** **  

27. spacer 1.1|104092|31|NZ_CP022077|PILER-CR matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 9, identity: 0.71

catttaagtccattttttttagcacactcat	CRISPR spacer
tattttaatccattttttttagcaatatttc	Protospacer
.**** *.****************   *. .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	194810 : 201446	8	Escherichia_phage(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP022077|194810:201446|DBSCAN-SWA
AATGGCAATAGAATTTGATATACAAGAATCAAAAATTTTAAAAGGAGTGTATATTATAACTCCTAATAAATTTAGAGATTTAAGAGGTGAAATTTGGACAGCTTTTACAGATGAATATTTAAGCAAGTTGGTTCCAGATGGAATTAAATTTAAGCATGACAAATTTATAAATTCCCATTTTAATGTTTTACGTGGAATACACGGAGATGTGAAAACTTACAAACTTGTAACTTGTGTCTATGGAGAAGTGCATCAAGTTGTGGTTGATTGCAGAAAAGATTCCCCAACTTATTTAAAATGGGAGAAATTTATTATAAGTTATAAAAATCAGCAACTTATTTTATTACCACCAAATATGGGAAATTCTCATTATGTGAGTTCAAAGGAAGCAGTGTATTATTATAAACTTGCTTATGAGGGGGAATATATGGATGCACCTGATCAATTTACTTATGCATGGAATGATGAAAGAATTGGTATAGATTGGCCAACAAATACGCCTATTCTTTCCGATCGCGATATTCTTGCAACTAAAAATAAAGGATAAATTATGGAAAAATTATTAAAAGAATTAAATAATAATATTAAACTTAGCAATCAATTGTCCTATCAAATCTTAATGTCAAATATTATTTCGAATTTAGATATTGATAAAAAAGATAAAGAAATTTTACTTTTATTATTACAAGCAAGAGATAGAAATTATATTCGTATAAATAATAATGAACAATGTTATCAAAATATTATAAATTATTTAAATCTCATTCGACCTTTGGAATTGCCTTTGTGTGATTTGTTAAGAATAGGTGGTAATGGAGATGGTGGTTATGTGATGTATAATGGGGGGGGGGATATGAGTGATATTAATGCAAAAGCTCTTTCTTTGGGTGTTTCGGATAGTTCTCCTTGGGATTTAGAAATGGCTCAGAGGGGATTTAAGGTGATAGAATATGATGCTAGTATAGAAAAATGTCCTTATGACCATGAAAATATTGTTTTTCATAAAAAATTTATAGGTAATGTAAATAATGAGAATACAATTACTTTGGTACAAGCTTTAAAAGATAATAATTTAGATGAGAACAAGCCAAATATTTTGCAATGTGATATTGAAAATTGCGAATGGGATATGCTTGAAAATATTGATATAAGTATTTTAAATAAATATTTCTCACAAGTTATATTTGAATTTCATGGGTGCAATCCTGAGGAGCAAGATGGGGTGGAAAAAAGAATAAGTTTGCTAAAAAAACTTAATGAATATTTTGTTCCAATGCATACACATTTTCACAACCATGGGAAAATTTTTTATTCTCAAGGATTATTTTTTAGTACCACTTTGGAGGTTAGTTATTTAAGAAAAAATTTGATTAATCTTGATATTATGAAATATAGAGATGTCGCAGGGGGATTTAAAAATTTAGATTTTCCTTGGATTTCAAATCCAGAAATTCCAATACGATTTAGAGGTTATTGATGCAAACAAATTCAAAAATATATATAGCGGGGCACAAAGGAACCGCAGGTACAGCATTGGTAGAAAACTTACAAAAAAGAGGATTTAATAATCTTGTTTTAAAAACAAGGCAAGAGCTTGATTTGGTTAATCAGCAAGCGGTTGCTAAATTTTTTAAAGAAGAAAAGCCAGAATATGTTTTTTTGACTGCAGTCTTACCTTGTGGTGCTGCAAATGTCGCTCAAAGGGCTGATTTTATTTATGAAAATTTGATGATTCAAAACAATGTTATTCACAATTCATTTCTTAATAATGTTAAAAAATTGGTATTTTTTGGTTCTGGGTATATGTATCCTGAGAATGCTAAAAACCCATTGAAAGAGGAATATTTATTTCAAGGTGATTTAGAATATGGCGCTTATTCTTTTGGTGCAGCCAAAATAGCTGGAGCTATAATGTGTGAAAGTTATAATATTCAATATGGTACTAATTTCATTACTCTTGTTTTAAATAATCTTTACGGAACTAAAGCAAATTTTGATTTTGGAAAATCAAGAGTCTTACCCGCATTGCTTAGAAAATTTCATTTAGCAAAATTGTTAAGCGAGGGTAATATAACTCAAATCCTTCAAGATTTGAAAATGAATAATTTTGAAGAAGCAAAAGAATATTTGCATAATTTTGGAATTAGTAAAAAAAGTGTAGAAATTTGGGGCACTGGAAAAGTTAGGAGAGAATTTATTCATAGTGACGATCTAGCCGATGTAGCTATCTATACGATGCAAAATATTGATTTTAAAGATCTTATTAAAGATAGAAAAAGTAAAAATACCCATATTAATATAGGGACAGGTATTGACTATTCAATCAAAGAAGTTGCTTTGATGGTAAAAAATATAGTTGGGTTTAGCGGAGAACTAGTTTTCAATACTTCTAGACCGGATAGCACAATGGATAGACTTATGGATTGCTCAAAAATTCATTCTTTAGGTTGGAAGCATAAAATTGAACTTAAAGATGGTATTAAAATGATGTATGAATGGTATAAAACACAAAATTGATTTTCAAAGACGAAAGGAAAAGTATGTCAAAAAAAGTTTTAATTACAGGTGGTGCAGGTTATATAGGTTCGGTTTTAACGCCGATTTTACTTGAAAAAGGTTATGAAGTTTGTGTGATTGATAATTTGATGTTTGATCAAATTTCTCTTTTATCTTGTTTTCATAATAAAAATTTTACTTTTATAAATGGTGATGCTATGGATGAAAATCTTATTAGGCAAGAGGTAGCAAAAGCTGATATTATTATTCCTCTAGCTGCTTTAGTTGGAGCTCCACTTTGTAAAAGAAATCCAAAATTAGCTAAAATGATCAATTATGAAGCCGTAAAAATGATAAGTGATTTTGCAAGTCCTTCTCAAATATTTATTTATCCCAATACAAACAGCGGTTATGGTATAGGAGAAAAAGATGCAATGTGTACTGAAGAATCTCCCTTGCGTCCTATCTCAGAATATGGGATCGATAAAGTGCATGCGGAGCAATATTTGCTCGATAAAGGAAATTGTGTGACTTTTCGTTTAGCTACTGTTTTTGGAATTTCACCTAGAATGAGACTTGATTTACTTGTTAATGATTTTACTTATCGTGCATATAGAGATAAATTTATAGTGCTTTTTGAAGAGCATTTTAGACGCAATTATATTCATGTTCGCGATGTGGTTAAAGGATTTATTCATGGAATTGAGAATTATGATAAGATGAAGGGTCAGGCTTATAACATGGGATTAAGTTCTGCAAATTTGACCAAAAGACAGCTTGCTGAAACAATTAAAAAGTATATTCCTGATTTTTATATCCATTCAGCCAACATAGGTGAAGATCCAGATAAAAGAGATTATTTGGTTTCAAATACTAAATTAGAGGCTACAGGTTGGAAACCAGATAATACTTTAGAAGATGGTATTAAAGAGCTTTTAAGAGCGTTTAAAATGATGAAAGTTAATCGCTTTGCAAATTTTAATTAAAATTAAAGGAGATAAATAATGAAAAAAGAACAATTGGAAGTATTAAAAGAGGCTCTAAATGGCTTGATTTATCAAATTGATAATCATCAGCAAGCTAGGAAACCAATAGCTGATGTAGAAAGGATAATTTCAGAGTTGCAAGTATTAAACCATTGGAATAAGCAAGAAAATGTTTATAATGCATTGCATTTAATTCAGGGTGCTATAGCCGATCCACAAGGGCTTGGTAGATTAAATTTGTTATTAGATAATGCCAGAATTCCAAAACAATATTATGATATTTTTTACAAGATGCTTTATGTCGATAAATATGGGGGGGGGGATGGATATCGTCCAGTATGTATTGATTGTGGTGGACATGCAGGCTTAATTACTGATATTATTTTACATTGTGGCGGGCAAAGTTATATCTTTGAGCCAAATATTTATTTAAATTATTTTTTAAGAAAAAAATATGAAAATAATATAAATGTAAAACTTTTTCAAAAAGCAGTATCGGACAGAAATTATGAAACAGATTTTATTATGTTTGGAAATAGGATACTATCTCAAGGCAATCGTATAGTTGAAAGTGTACAAGACAGTCAGACGGAAAAAACATATAAAGTTCAAGTAATTGATTTATGCGAGTTTATCGAAAATGAAATTTTAACACAACATAAAAGGATTTATTTTCTAAAACTTGATATTGAAGGAATGGAGTTTGAGATAATGAAAAAAATTATTGAAAAAAAAATATATAAAAAAATTGATTATATTGCTTGTGAAACACATGAATATATGTTTGATGATTCAGAGAAAAAGATAGGGGAGTTAAAGCAATTGATTAATAAATGTAATATTCAAAATATTTTACTTGATTGGATATGATAAATAAATTAGGAGATTTATGAAAACCATACGCACACAAACTCCTCTTCGTCTCGGTCTAGCAGGTGGTGGGACTGATATAAATTTATATTGTGATAAATATACAGGTTATGTTTTAAATGCGACTATATCTTTATACATACATTGTACTTTGATCAAAAGAGAAGATGGAAAAATCATTTTTGATTCTCCTGATACAAATTCTTACTGTGAGTACGAAAGTAAAGAATTCTTAGGAAATGATGGAAAATTAGATATTTTTAAAAGTATTTATAATCGCATTGTAAAAGATTTTACAAAAAAACCTTTGAGTTTTTCTTTGCATACCTATTCGGATGTACCAAGTGGTAGTGGCTTGGGCGGAAGCTCAACTTTGGTTGTAGGGGTTATAAAAGCCTTTGCAGAATGGCTTAATCTACCTTTAGGAGAATATGAAATCGCTAAACTTGCTTACGAGATAGAAAGAGAAGATTTAGGCATAGTAGGTGGAGCACAAGATCAATACGCCGCAACTTTTGGTGGTTTTAATTTTATGGAATTTTATAACAATAAAAGAGTCATTGTTAATCCTTTGCGTATTAAAAACTGGATAGCTAGTGAGCTTGAAGCTAGAACTGTGCTTTATTTTACAAATATCACAAGAGAAGCAAAAGATATAGAAGAGCATAAAAAAGGAAAGCTTGGAGATGAAAAATCTTTAGAAGCCATGCACGCGATAAAACAAGATGCTATAAAGATGAAAGAAGCTTTATTTAGAGCCGATTTTGGTACTTTGGCGCAAATTTTAGGAAAATCTTGGCGGTCAAAAAAAATCATTTCAGAAATCGTTAGTAATGATGAGCTTGAAAGAATTTATAAACTTGCTATAGATAACGGAGCCTATAGTGGCAAAACCAGCGGAGCAGGAGCTGGTGGATTTATGTTTTTCTTCGTAGATCCTACTAAAAAATACAACTTAATCAAAGCTTTAAGAAAAGAGCAAGGTTATGTGCAAGATTTTTCATTTACAAAAGAGGGGGTTAAATCATGGAGAATTTAAATTCCTATATAAAAGGACATTTTGCAGATTCTATTTTAGTAAAAGAACAAATTTTAAAAGATGAGAATTTGATAACTCTTATTAAAAATGCTTCATTAGAAGTCATAAAAGCTTATAAAAATGGTAACAAAACTTTATTAGCAGGAAATGGTGGCAGTGCTGCAGATGCACAGCATATTGCAGGGGAATTTGTAAGTAGGTTTTATTTTGATAGACCCGGTATCGCAAGTATTGCACTTACTACAGATACTAGCATATTAACAGCTATTGGTAATGACTATGGTTATGAAAATTTGTTTGCTAGACAAGTGCAAGCTCAAGGTGTTAAGGGAGATGTTTTTATAGGCATTTCAACAAGTGGAAATAGTAAAAATATCTTAAAAGCTTTAGAGTTTTGCAAACAAAAAGAAATCATAAGTATAGGCTTAAGTGGAGCTAGTGGCGGGGCTATGAATGAACTTTGTGATTATTGTATAAAAGTGCCTTCAACTTGCACGCCAAGAATTCAAGAAGCGCATATTTTAATAGGACATATTATTTGTGCTATTGTCGAAGAAGAGCTTTTTGGTAAAGGTTTTTCTTGCAAGCAATAATACTTTGTGGCGGCTTAGGAACAAGACTTAAAAGTATTATAAAAGACATTCCAAAGCCTATGGCACCGATAAATGATAAGCCTTTTTTAGAATTTATTTTTGAGTATCTTAAAAAGCAAGGTATAAAAGAAGTAATTTTAGCAGTATCATACAAATATGAAGTGATAAAAGAGTATTTTAAAGATGAGTTTTTAGGTATAAAAATAAAATACAGCATCGAAAAAGAGCCTCTAGGAACAGGCGGAGCCATAAAAGAGACTTTGAAATTTGTAAAAAATGAAGCTTATGTTTTAAATGGTGATACTTTTTTTGACATAGATTTAAGTAAATTAAAGCTAAATGAAAGTAAAATTTGTCTTGCTTTAAAACAAATGAATGATTTTGATAGATACGGCACAGTAAATGTTGATGAACAAGATCTTGTAATTTCTTTTGAGGAAAAGGTATTTAAAAAGCAAGGTTTAATCAATGGTGGAATTTATCTTTTAACTAAAGATATTTTTAATGATTTTGCTTTGCAGGAAAAATTTTCTTTTGAAGAGTTTTTACAAGAAAATTATAAAAAACTAAAGGCTAGGGCTTGTATTTTTGATGATTATTTTATAGATATTGGTGTGCCTGAGGATTATTATCATTTTCTAATCAATAATTGA

Protein sequences of DBSCAN-SWA_1

>NZ_CP022077|194810:201446|200187_200793_+|WP_002857991.1|DBSCAN-SWA
MENLNSYIKGHFADSILVKEQILKDENLITLIKNASLEVIKAYKNGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYENLFARQVQAQGVKGDVFIGISTSGNSKNILKALEFCKQKEIISIGLSGASGGAMNELCDYCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ
>NZ_CP022077|194810:201446|198309_199161_+|WP_002857889.1|DBSCAN-SWA
MKKEQLEVLKEALNGLIYQIDNHQQARKPIADVERIISELQVLNHWNKQENVYNALHLIQGAIADPQGLGRLNLLLDNARIPKQYYDIFYKMLYVDKYGGGDGYRPVCIDCGGHAGLITDIILHCGGQSYIFEPNIYLNYFLRKKYENNINVKLFQKAVSDRNYETDFIMFGNRILSQGNRIVESVQDSQTEKTYKVQVIDLCEFIENEILTQHKRIYFLKLDIEGMEFEIMKKIIEKKIYKKIDYIACETHEYMFDDSEKKIGELKQLINKCNIQNILLDWI
>NZ_CP022077|194810:201446|200780_201446_+|WP_002857908.1|DBSCAN-SWA
MQAIILCGGLGTRLKSIIKDIPKPMAPINDKPFLEFIFEYLKKQGIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKETLKFVKNEAYVLNGDTFFDIDLSKLKLNESKICLALKQMNDFDRYGTVNVDEQDLVISFEEKVFKKQGLINGGIYLLTKDIFNDFALQEKFSFEEFLQENYKKLKARACIFDDYFIDIGVPEDYYHFLINN
>NZ_CP022077|194810:201446|194810_195356_+|WP_002858190.1|DBSCAN-SWA
MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTDEYLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKTYKLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIISYKNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEYMDAPDQFTYAWNDERIGIDWPTNTPILSDRDILATKNKG
>NZ_CP022077|194810:201446|195359_196286_+|WP_002864204.1|DBSCAN-SWA
MEKLLKELNNNIKLSNQLSYQILMSNIISNLDIDKKDKEILLLLLQARDRNYIRINNNEQCYQNIINYLNLIRPLELPLCDLLRIGGNGDGGYVMYNGGGDMSDINAKALSLGVSDSSPWDLEMAQRGFKVIEYDASIEKCPYDHENIVFHKKFIGNVNNENTITLVQALKDNNLDENKPNILQCDIENCEWDMLENIDISILNKYFSQVIFEFHGCNPEEQDGVEKRISLLKKLNEYFVPMHTHFHNHGKIFYSQGLFFSTTLEVSYLRKNLINLDIMKYRDVAGGFKNLDFPWISNPEIPIRFRGY
>NZ_CP022077|194810:201446|199180_200200_+|WP_002858413.1|DBSCAN-SWA
MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCTLIKREDGKIIFDSPDTNSYCEYESKEFLGNDGKLDIFKSIYNRIVKDFTKKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQDQYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKKGKLGDEKSLEAMHAIKQDAIKMKEALFRADFGTLAQILGKSWRSKKIISEIVSNDELERIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALRKEQGYVQDFSFTKEGVKSWRI
>NZ_CP022077|194810:201446|196285_197326_+|WP_002864205.1|DBSCAN-SWA
MQTNSKIYIAGHKGTAGTALVENLQKRGFNNLVLKTRQELDLVNQQAVAKFFKEEKPEYVFLTAVLPCGAANVAQRADFIYENLMIQNNVIHNSFLNNVKKLVFFGSGYMYPENAKNPLKEEYLFQGDLEYGAYSFGAAKIAGAIMCESYNIQYGTNFITLVLNNLYGTKANFDFGKSRVLPALLRKFHLAKLLSEGNITQILQDLKMNNFEEAKEYLHNFGISKKSVEIWGTGKVRREFIHSDDLADVAIYTMQNIDFKDLIKDRKSKNTHINIGTGIDYSIKEVALMVKNIVGFSGELVFNTSRPDSTMDRLMDCSKIHSLGWKHKIELKDGIKMMYEWYKTQN
>NZ_CP022077|194810:201446|197349_198291_+|WP_002858299.1|DBSCAN-SWA
MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLSCFHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVKMISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGNCVTFRLATVFGISPRMRLDLLVNDFTYRAYRDKFIVLFEEHFRRNYIHVRDVVKGFIHGIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSANIGEDPDKRDYLVSNTKLEATGWKPDNTLEDGIKELLRAFKMMKVNRFANFN

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002858190.1|194810_195356_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4
WP_002864204.1|195359_196286_+	hypothetical protein	NA	NA	NA	NA
WP_002864205.1|196285_197326_+	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.7e-69	44.4
WP_002858299.1|197349_198291_+	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
WP_002857889.1|198309_199161_+	FkbM family methyltransferase	NA	NA	NA	NA
WP_002858413.1|199180_200200_+	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
WP_002857991.1|200187_200793_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
WP_002857908.1|200780_201446_+	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6