CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022473	Vibrio parahaemolyticus strain MAVP-Q chromosome 1, complete sequence	0 crisprs	DEDDh,DinG,cas3,csx1,cas6f,cas7f,cas5f,csa3	0	0	3	0
NZ_CP022472	Vibrio parahaemolyticus strain MAVP-Q chromosome 2, complete sequence	2 crisprs	DEDDh,WYL,csa3,cas3,cas5f,cas7f,cas6f	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

570818 : 588213

uncultured_Mediterranean_phage(18.18%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005455581.1\|570818_572459_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.4
WP_005455579.1\|572537_573839_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.2e-134	59.2
WP_005455577.1\|574464_574746_+	cell division protein FtsB	NA	NA	NA	NA
WP_017449147.1\|574747_575452_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	1.0e-04	22.9
WP_005380896.1\|575469_575946_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_021450029.1\|575992_577036_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_021450028.1\|577035_577812_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.6e-66	52.4
WP_005455562.1\|577811_578438_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.1
WP_021450027.1\|578452_579376_+	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
WP_005478537.1\|579456_580446_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
WP_005478546.1\|580525_583087_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.3e-33	23.7
WP_021450025.1\|583171_583654_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.9e-27	48.7
WP_021450024.1\|583853_584897_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	8.1e-112	60.7
WP_021450023.1\|585020_585488_+	recombination regulator RecX	NA	NA	NA	NA
WP_005455546.1\|585630_588213_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.9

DBSCAN-SWA_2

1871446 : 1885457

Vibrio_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005495398.1\|1871446_1873672_-	ribonuclease R	Q0GXV6	Lactococcus_phage	8.2e-61	31.7
WP_005483265.1\|1873966_1874179_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.9e-16	61.2
WP_005483162.1\|1875085_1875289_+	hypothetical protein	NA	NA	NA	NA
WP_005495402.1\|1875511_1875919_-	hypothetical protein	NA	NA	NA	NA
WP_005495404.1\|1875955_1876357_-	recombination protein NinG	A0A2I7S3K0	Vibrio_phage	3.7e-20	45.0
WP_025501179.1\|1876525_1877176_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	4.1e-21	36.5
WP_005495410.1\|1877168_1877549_-	hypothetical protein	NA	NA	NA	NA
WP_021486513.1\|1877545_1878499_-	helix-turn-helix domain-containing protein	A0A1V0E831	Vibrio_phage	3.8e-39	35.3
WP_005495414.1\|1878564_1878783_-	hypothetical protein	NA	NA	NA	NA
WP_005495415.1\|1878779_1879244_-	hypothetical protein	K7PJS5	Enterobacterial_phage	3.0e-18	48.0
WP_031776438.1\|1879263_1879515_-	hypothetical protein	A0A1I9KFF6	Aeromonas_phage	2.9e-07	41.9
WP_049874960.1\|1879566_1880283_+	helix-turn-helix domain-containing protein	G9L676	Escherichia_phage	1.4e-22	37.2
WP_127463331.1\|1881073_1881253_+	hypothetical protein	NA	NA	NA	NA
WP_031776437.1\|1881265_1884430_+	hypothetical protein	I3PUZ3	Vibrio_phage	8.7e-24	33.6
WP_021453095.1\|1884422_1884950_+	siphovirus Gp157 family protein	NA	NA	NA	NA
WP_031776436.1\|1885268_1885457_+	hypothetical protein	F6LQB8	Bdellovibrio_phage	2.3e-09	54.7

DBSCAN-SWA_3

2632754 : 2639456

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005440184.1\|2632754_2633225_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3
WP_021449697.1\|2633394_2634504_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-63	39.6
WP_005483039.1\|2634673_2635327_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-33	37.5
WP_021449698.1\|2635339_2636464_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.4e-48	36.0
WP_005482986.1\|2636471_2636921_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_017448803.1\|2637048_2638299_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.1e-98	47.9
WP_005483011.1\|2638316_2639456_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP022472

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022472_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022472_1

68760-68857

Orphan

Consensus_repeat	Method
TATTTTTAAAATGCCTTTTCAAAAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP022472_1

>merge|NZ_CP022472|1|68760-68857|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAATTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCACAATCAATATTTTTAAAACGCCTTTTCAAAAA

>NZ_CP022472|1|1|68760-68857|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAA	TTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCACAATCAA
TATTTTTAAAACGCCTTTTCAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022472.1\|WP_005482845.1\|75971_76649_+\|porin	unknown	unknown	gnl\|CDD\|368776
NZ_CP022472.1\|WP_021450388.1\|71342_72254_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP022472.1\|WP_031776342.1\|74102_75842_-\|transporter	unknown	unknown	gnl\|CDD\|271371
NZ_CP022472.1\|WP_005460834.1\|73293_73917_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP022472.1\|WP_005460779.1\|70629_71265_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|181746
NZ_CP022472.1\|WP_005487087.1\|65253_65964_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236392
NZ_CP022472.1\|WP_005460804.1\|67918_68701_-\|DNA-binding-transcriptional-regulator-KdgR	unknown	unknown	gnl\|CDD\|185046
NZ_CP022472.1\|WP_005482884.1\|72352_73282_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP022472.1\|WP_005464962.1\|62054_63203_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP022472.1\|WP_006740949.1\|63496_64303_+\|arylamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366312
NZ_CP022472.1\|WP_021450393.1\|57832_58636_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP022472.1\|WP_005467181.1\|70268_70589_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380366
NZ_CP022472.1\|WP_005482833.1\|60247_60709_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|226429
NZ_CP022472.1\|WP_021450386.1\|76664_78893_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_031776341.1\|69736_70261_+\|YgjV-family-protein	unknown	unknown	gnl\|CDD\|378474
NZ_CP022472.1\|WP_021450390.1\|61153_61993_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NZ_CP022472.1\|WP_005464959.1\|59156_60248_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP022472.1\|WP_005482867.1\|65966_67835_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP022472.1\|WP_005464972.1\|64383_65253_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176159
NZ_CP022472.1\|WP_005482916.1\|68956_69718_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605

Protein	Function_ID	Function_description	E-value
NZ_CP022472.1\|WP_005482845.1\|75971_76649_+\|porin	gnl\|CDD\|368776	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.	3.08357e-24
NZ_CP022472.1\|WP_021450388.1\|71342_72254_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	3.22521e-18
NZ_CP022472.1\|WP_031776342.1\|74102_75842_-\|transporter	gnl\|CDD\|271371	cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	1.14935e-110
NZ_CP022472.1\|WP_005460834.1\|73293_73917_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	4.28455e-121
NZ_CP022472.1\|WP_005460779.1\|70629_71265_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	gnl\|CDD\|181746	PRK09273, PRK09273, hypothetical protein; Provisional.	2.15977e-144
NZ_CP022472.1\|WP_005487087.1\|65253_65964_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|236392	PRK09146, PRK09146, DNA polymerase III subunit epsilon; Validated.	1.10229e-38
NZ_CP022472.1\|WP_005460804.1\|67918_68701_-\|DNA-binding-transcriptional-regulator-KdgR	gnl\|CDD\|185046	PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR; Provisional.	0
NZ_CP022472.1\|WP_005482884.1\|72352_73282_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.15929e-102
NZ_CP022472.1\|WP_005464962.1\|62054_63203_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP022472.1\|WP_006740949.1\|63496_64303_+\|arylamine-N-acetyltransferase	gnl\|CDD\|366312	pfam00797, Acetyltransf_2, N-acetyltransferase. Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (M. tuberculosis, M. smegmatis etc) to man. It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat Tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid.	1.88138e-97
NZ_CP022472.1\|WP_021450393.1\|57832_58636_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.14169e-72
NZ_CP022472.1\|WP_005467181.1\|70268_70589_+\|cupin-domain-containing-protein	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.13072e-54
NZ_CP022472.1\|WP_005482833.1\|60247_60709_-\|oxidoreductase	gnl\|CDD\|226429	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown].	3.9997e-40
NZ_CP022472.1\|WP_031776341.1\|69736_70261_+\|YgjV-family-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	2.12554e-49
NZ_CP022472.1\|WP_021450390.1\|61153_61993_-\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	2.44738e-143
NZ_CP022472.1\|WP_005464959.1\|59156_60248_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.06677e-44
NZ_CP022472.1\|WP_005482867.1\|65966_67835_-\|CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	2.84814e-139
NZ_CP022472.1\|WP_005464972.1\|64383_65253_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176159	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 1. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.14139e-108
NZ_CP022472.1\|WP_005482916.1\|68956_69718_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	0

>NZ_CP022472.1|WP_005460804.1|67918_68701_-|DNA-binding-transcriptional-regulator-KdgR
MEKSTQPEAVSSVLKVFHILQALGEQKAIGVSELSQRLMMSKATTYRFLQTMKSLGYVSQEGEADKYSLTLKLFELGAKSLEYVDLIELADKEMRHISEQTNEALHLGALDENAIIYIHKIDSGYNLRMQSRIGRRNPLYSTAIGKVLLSERDESFVRDVLSDVEFIKHTEKTLENTDQVLEELAKVRDFHYAEDNEEQEPGLRCIAAPIYDRFGQIIAGLSISFPTIRFDEERMEYYVGLLHQAGKNISEQLGYHDYPA
>NZ_CP022472.1|WP_005482867.1|65966_67835_-|CBS-domain-containing-protein
MGTSVTPNIFDFLIKIDPFDKLPEPVVESIANSVKVKYLVRGETIGFSALCDQRYLYIIRTGAIEQRTPNGELRARLGQDDQFGFTFLDPLENAEDGYQAEAIEDSLLYLIPHSELKLVSEEHPEFADYFAAQANVRLSSAVKYVCRKEEKGLFFRTVGEIASENIAIVDVNDSIRSVAQTMCGKQRSSCAVVMKEGEIIGLVTDRDMTKSVVAQDMDTNQPIADVMTPNPVLIEDDAKVIQAISLMLQYNIRCLPVVHGKQVKGLLTTTHLVHNHRTQSLFLIEKIKYASSLNALAALKEERQTIFQALVESGVSAEIQGRVMSMIMDAFTRRIIQLNEELLGPPPCDYAWLVAGSHARNEVHMLSDQDSAIVLSDDATEEHKLYFTHLAMRVCNGLAACGYPLCDGKYMAASPKWCQPIRRWKEYYQKWVASPEYNKLLSISVFLEVRAIHGNREFVDQIQQHLHDCIQKSPSFIPALVRDAIDTQPPLGIFNNLVLEKGGENSNTLNIKKYALNLIIDLARIFSLAAGGSLTGTEERFRYAAQHGTLSKDSVENIIGAYRFITQVRFRHQLNAILAGTTPDNHIAPDDFSSFERKHLKDAFKIISELQDVAKLKFVKGA
>NZ_CP022472.1|WP_005487087.1|65253_65964_-|DNA-polymerase-III-subunit-epsilon
MIKRWFKRWETPLSPEQKRQAIHVIDDWPMVLKDYLQRPLVDDSTTLKDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAQINGLTPQDLAKGLPLDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFLVQSKKLTALPDVTLRQLMR
>NZ_CP022472.1|WP_005464972.1|64383_65253_+|LysR-family-transcriptional-regulator
MANWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAGQLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVDLDLVLTNQKLDLIEQGVDVAIRLGRLQDSSMIAKRLSSRQTYVCASPMYLERFGEPHTLSELGRHQCLVGSVDYWHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLVQLPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFLAQELA
>NZ_CP022472.1|WP_006740949.1|63496_64303_+|arylamine-N-acetyltransferase
MNKTDLNAYLTKLGLPSELPADLESLHKIHVAQHRCLPFENFDISLQRGISVEIEDIIQKTVYHSRGGYCFELNGLMLDVLKTLGFEARSLLGRVHVMGTPTGRSHQITLVTLDEQAWIVDVGFGSNTPRAPLPFILNQVIQTDLQTFRFVEDAQFGYFLQVLSTDGTDTWNNLYSFDLEFVFAGDIACGNFFTSTSPHSRFTSARVAAKATESGLVTLLNYTLKYTSQGEQTELELEPGQAYLDALKEYFGIELDAQYGDLRPLPDA
>NZ_CP022472.1|WP_005464962.1|62054_63203_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MTLEIKPGQTHIKSKAMVAWAAGEPLKMEEVDVQLPKAGEVLVRIVATGVCHTDAFTLSGDDPEGIFPSILGHEGGGIVEMVGEGVTSVEVGDHVIPLYTAECGECKFCKSGKTNLCQAVRETQGKGLMPDGTSRFSINGETIFHYMGCSTFSEYTVLPEISLAKVNKQAPLEEVCLLGCGVTTGMGAVLNTAKVEKGDTVAIFGLGGIGLSAIIGARMAGASRIIGIDINESKFDLAKQLGATDVINPQKFDKPIQEVIVEMTDGGVDYSFECIGNVNVMRQALECCHKGWGESVIIGVAGAGQEISTRPFQLVTGRVWRGSAFGGVKGRSELPEIVNRYMAGEFGLQEFITHTMGLEDVNKAFDLMHEGKSIRTVIHMDK
>NZ_CP022472.1|WP_021450390.1|61153_61993_-|S-formylglutathione-hydrolase
MTIENVSQTKVFGGWHKQYTHDSKALNCTMRFAIFLPPNATKSNPVPALYWLSGLTCTDENFMQKAGAFRMAAELGIAIIAPDTSPRGEGVADDASYDLGQGAGFYLNATQAPWSLHYHMYDYVTQELPAIIESNFPVTDVKSISGHSMGGHGALTIGLKNPTLYRSISAFSPISNPMQCPWGQKAFTAYLGTDIESWKQYDASELFKKEKSPLPILVDQGDADGFLSEQLKPEALLAAAKQHGSELNLRMQSGYDHSYYFISSFIDNHLNFHAKYLFA
>NZ_CP022472.1|WP_005482833.1|60247_60709_-|oxidoreductase
MKKIVSLSLLLFAPFLSANSITFSSPQQPSVTLKLEELQSLPTTSYTTDLPWIQQSSEFLGVKLSTLLTHVYGSIPEQVDIGSLNNYHSTLSRKDIVRYQPILAYQQDHHYIKVRNKGPYWVIYPLSQYPELDHNEYHAQMVWQVNEMKIKQK
>NZ_CP022472.1|WP_005464959.1|59156_60248_-|GGDEF-domain-containing-protein
MKLSEAYPIKQKNYSTTSKMLLLVFATSLLLANVILLQQTRVLAQSFTDEQKQATWFLFQLSKELSELVSEARRLDENVLKIEGAELQYELAWSRFDLLINSKDVYTFFSRNHIQQYFLQLFNEFKELEPLLVEAKTGDSQAAAQFYRATQTLYLNLVEFVNQNFRLTSQVYETQKDESQRLMKAQYMLFATFVLSILSLTYFFYRESHFHRKLALSDPLTGLGNRNALFVTLRNNTRNRTAFSLCLLDLNGFKNVNDTYGHQAGDTVLCEIAKRLKDMNIDSFSTYRMGGDEFAVVIESSDVDAEEAKKHIHSVFDTPVLNANNVSSLSTSIGVAHYPSDSDNVDFLISIADKRMYKMKFQR
>NZ_CP022472.1|WP_021450393.1|57832_58636_+|Cof-type-HAD-IIB-family-hydrolase
MSQVSIKFIASDMDGTLLDQYGRLDPEFFDLFLQLEEQGILFSAASGRQYYSLRDTFAPIKDRVLYVAENGTLVMYQDKELYSCTIPKAEVAEIVQAAREIDGANIVLCGKRSAYIETHDQQSLEEFQKYYHRCETVADLLEVEDEFIKVAICHFDGSEELLFPTMNAKFGATHKVVVSAKIWLDVMNAEASKGAAIKHLQETMNFTPAETMTFGDYLNDLEMLQVSEHSYAVANAHEEIKKIARYSAPSNQEAGVLKVIKEKVLAK
>NZ_CP022472.1|WP_005482916.1|68956_69718_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILDSFNLEGKVAIVTGCDTGLGQGMALGLAKAGCDIVGVNISEPTETIEKVEAEGRKFVDIRANLMKLDDIPTIVDRAVTELGRIDILVNNAGIIRRNDAIEFSEQDWDDVMNINVKSVFFMSQAVAKQFIAQGEGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWASHGINVNAIAPGYMATNNTAALRADEQRNKEIVDRIPAARWGTPEDLAGPCVFLASKAADYINGYTIAVDGGWLAR
>NZ_CP022472.1|WP_031776341.1|69736_70261_+|YgjV-family-protein
MVDTTILAQALGFISFGLGFSVFYQKNDRHLKILMLIFNLNHLLHFLLLGSMVSALSALLSALRTTTAIFVSSKRVAAVFIVISLVSGFWVAEQWRDLWPIIGTVIGTYSVFCLSGIRMRIGFLLGASCWLTNNILVGSIGGTLLEMTVIVINLLTIYRLHRQQSESMINQSSY
>NZ_CP022472.1|WP_005467181.1|70268_70589_+|cupin-domain-containing-protein
MFVFNQDIPMEDLGEGISRKVLAHSDNMMSVEVHFEEGAIGAMHSHPHEQLTYVLSGEFEFTIGDEKKIVKTGDTMYKEPNIEHGCVCLKAGVLIDTFTPMRKDFV
>NZ_CP022472.1|WP_005460779.1|70629_71265_+|RpiB/LacA/LacB-family-sugar-phosphate-isomerase
MKIALMMENSQAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQGALMSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLAFAKGFGWAGELNVRYIFEKAFTGKRGEGYPIERAAPQQANAAILNNVKSAVAKDVVEGLRAIDQELVKTAVGSTQFQECFFAHCQVPEIAEYVKSLLD
>NZ_CP022472.1|WP_021450388.1|71342_72254_+|alpha/beta-hydrolase
MHVAPITSLQTWFPEHLVLPLWSEPQIPSHLVQSYQERNPNELLPDRAVFEITHPEMVVFEPEQSNGIGILLMPGGGYQRVSVDKEGADSARVLNQAGFTVFVMTYRMPNEGHEFGAWTPLADAQRAMRLVRQLPLASHLSSIGVLGFSAGGHVAASLATSHALDIYPLQDEADRVSAKPDFCALMYPVISMNTDIAHMGSRAELLANLERESDLLRFSLEKQVTSDMPPCFLLHASDDTAVSVENSLVFWQALRQHEIATEMHLFEQGKHGFGIRDAQGLPVAAWPQLLSAWLQNLAEKARR
>NZ_CP022472.1|WP_005482884.1|72352_73282_+|sugar-kinase
MNPISRVAIIGECMVELKKHDGVLQQGFGGDTLNTAVYLSRLTKQHGVETSYVTGLGHDPFSREMLTAWREEGINTDMVYLSEDKLPGIYAIETAEDGERSFFYWRNDAAAKYWLRERALLSLVKDLCQHQMIYLSGISLAIISDDCRQMLIELLTMCRKEGVKIAFDNNFRPKLWPNIEQARDFYSKILSVTDMAFLTFDDEVMLWGDKHEDEAISRTKNFGVKEIIVKRGADDCFVVTQDQQHTVAALKVDAVVDTTAAGDSFSAGYLAKRILGGDVAESALAGHKVAGTVIQHRGAIIPSQAMPTI
>NZ_CP022472.1|WP_005460834.1|73293_73917_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MKDLNQQLSEIKVVPVIAIKDAGKAVKLAQVLIENGLPCAEVTFRTEDAALAIKNMREAYPEMLIGAGTVLTSAQVDEAIDAGVDFIVSPGFNPTTVKYCQQRNVTIVPGVNNPSLVEQAMEMGLRTLKFFPAEPSGGVAMLKALSAVYPVKFMPTGGVSPSNVKDYLSISSVLACGGTWMVPGDLIDNEQWDELAKLVREVAGIIE
>NZ_CP022472.1|WP_031776342.1|74102_75842_-|transporter
MTLLDSMIVMIYLLFIGIAAWLFRRFSTSSNDFLQGGGTMMWWMAGATAFMTQFSAWTFTGAAAKAYEDGISVMFIFWGNALGFFVAAAFFARRYRRLRVETAMEVIRVRFGHTSEQLFTWLSFPLTLIACAIWMNGLASFFSAVFAIEMSTTILAMGVIVTLIAVSGGAWTVSVTNVIQLVLLIAITLVIGYTALQHFDSPSEVFAYTTPIYGEQIRMPSLFVMWAIAMLLQQTMSNNHTLSCYRFLTTANDKDATKAAFVAGVLFVFAPVLWFMPAWFVAAQNIDLLAIYPALEQSANNAAYLYYIQHYMPQGLLGLVMVALVAATIAPLSSAHNRNAGIVVKSLYQVWFNPNATNRQQLMVGKIATIVSGVLATVTALLLASVESYSLFDMMIVFAAFIQMPINIPSLLALVNLKTPNWSGWATVMVGCAVSLFMMFIFDVQWLSSSPLTPRESKDLSVVATLAVHLLVTGGFFLFTRVFYAKESPSIQQSRTALAIQLATPISDEELSPINHKQGLYVGSITALAGMLLILAGVVLAGSSQSIFVAIGCIVLLFSLFLLQPTQHSKRAWQKQKTK
>NZ_CP022472.1|WP_005482845.1|75971_76649_+|porin
MKVRYLTSALLLAMTSGLAAAASVDIRHEYVPDRDGDEHRDRIYVSHRFDNQIGFSVEAKWNYKDGHMGNAGHETGVSYRWKATDNFSLTPGINIDASPSGASVFKYNLTGAYKINDEWDVAARIRHGYKNTDDSRYNQLNLYANRKFEWGKLGVEAEYKDIHGGEGGWKDKGHDQLIDFKGEYTKLESGVIPFFAIAAITHKGDGSEFKDEYVPRFRVGLKYNF
>NZ_CP022472.1|WP_021450386.1|76664_78893_+|hypothetical-protein
MKKHTLALCLAAILAPAAHAAEIKVEDLTWKAITFGQSTDMNFGSTILPEKVGVNQVTVNGDAVAAGKLASTFTIESRGGKLANSHEGLTFYYTELPTDVNFTLSADVVLEQLGPETGATPNRQEGAGLMVRDILGAERLVPQPEGHEEFPSASNMVMNLMRSHTRTNDGMTNINASFREGVYQPWGTPGNRLSRVDYVEGVPYGTAETYRMTLTRTNDGFKVSYRNGEKFVEQAVKGANANIVEMQNSDSQYVGFFASRNAKMTVSNVDLQLAAADTVDAPKYAAKQGELVFQIASSPRSATKEYPVQARANYSGEFEVLHNDKVVAKQTVTAGELFSQWLTLDSGANQMEVRFTAIDGPNKETQAHRYSVDVVSLPDPMTLYVAPNGSDKGNGSQAQPLDLATAVELLPAGGTIILKDGDYQGMEIPLTASGSADKLKHLRAEGDNVRFVSELRHEANYWHYQGIEVAGAQFIVHGSHNTFEKMVTHGAPDTGFVITSPENIGRALWASYNQVIESESYNNMDPSQINADGFAAKMRIGDGNTFIRCLSHHNIDDGWDLFNKVEDGANGAVTILDSISFSNGRTLDVANKGGTIGNGFKLGGEGIPVPHVVKNSLSFNNNMDGFTDNFNPGALVLSDNVSIDNKRFNYLFRKSPYSGEIEQGTFTNNRSYRFHVSSKYDDVINSAKSTGNALVENGTTYTSDGKAVDSKMLAPLKQASVIDTQQAIPGKQEAMQLKQLIH

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Crispr_ID: NZ_CP022472_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022472_2

1434275-1434402

Orphan

Consensus_repeat	Method
CCTTCTGGGGCATTACCTTGTGCCAAAGTCGGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022472_2

>merge|NZ_CP022472|2|1434275-1434402|CRISPRCasFinder
CCTTCTGGGGCATTACCTTGTGCCAAAGTCGGCTCATCCGTAGACCCACTCACACTTGGTTTCTGCTCTGGCGTTGCCACACCGGAATCAATACCTTCTGGGGCATTACCTTGTGTCAAAGTCGGCTC

>NZ_CP022472|2|2|1434275-1434402|CRISPRCasFinder
CCTTCTGGGGCATTACCTTGTGCCAAAGTCGGCTC	ATCCGTAGACCCACTCACACTTGGTTTCTGCTCTGGCGTTGCCACACCGGAATCAATA
CCTTCTGGGGCATTACCTTGTGTCAAAGTCGGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022472.1\|WP_021484590.1\|1438078_1438363_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_021448323.1\|1430142_1430643_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_005499538.1\|1425993_1426386_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_005484480.1\|1424127_1424343_-\|FliM/FliN-family-flagellar-motor-switch-protein	unknown	unknown	gnl\|CDD\|376445
NZ_CP022472.1\|WP_005499534.1\|1424345_1424996_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_005499540.1\|1426375_1427224_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP022472.1\|WP_005499586.1\|1439923_1440655_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_005499543.1\|1428259_1430146_-\|FHIPEP-family-type-III-secretion-protein	unknown	unknown	gnl\|CDD\|376386
NZ_CP022472.1\|WP_005499579.1\|1438364_1438931_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_021448321.1\|1439306_1439873_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_005499582.1\|1438939_1439344_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_005499593.1\|1441804_1442929_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_005499541.1\|1427207_1428248_-\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	unknown	unknown	gnl\|CDD\|376521
NZ_CP022472.1\|WP_025548601.1\|1443931_1444468_-\|type-III-secretion-protein	unknown	unknown	gnl\|CDD\|274190
NZ_CP022472.1\|WP_021450638.1\|1423350_1423884_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP022472.1\|WP_005499594.1\|1442950_1443439_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP022472.1\|WP_025548353.1\|1440668_1441715_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227900
NZ_CP022472.1\|WP_005484494.1\|1443471_1443930_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_005499536.1\|1425008_1426007_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022472.1\|WP_021450639.1\|1421708_1421990_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022472.1\|WP_005499541.1\|1427207_1428248_-\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	gnl\|CDD\|376521	pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.	2.20016e-70
NZ_CP022472.1\|WP_021450638.1\|1423350_1423884_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	1.01245e-19
NZ_CP022472.1\|WP_005484480.1\|1424127_1424343_-\|FliM/FliN-family-flagellar-motor-switch-protein	gnl\|CDD\|376445	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term. This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.	1.18231e-10
NZ_CP022472.1\|WP_025548601.1\|1443931_1444468_-\|type-III-secretion-protein	gnl\|CDD\|274190	TIGR02544, YOP_proteins_translocation_lipoprotein, type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.55289e-07
NZ_CP022472.1\|WP_005499540.1\|1426375_1427224_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	5.85479e-16
NZ_CP022472.1\|WP_005499543.1\|1428259_1430146_-\|FHIPEP-family-type-III-secretion-protein	gnl\|CDD\|376386	pfam00771, FHIPEP, FHIPEP family.	9.2628e-116
NZ_CP022472.1\|WP_025548353.1\|1440668_1441715_-\|hypothetical-protein	gnl\|CDD\|227900	COG5613, COG5613, Uncharacterized conserved protein [Function unknown].	0.000637117
NZ_CP022472.1\|WP_005499594.1\|1442950_1443439_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.0020258

>NZ_CP022472.1|WP_021448323.1|1430142_1430643_-|hypothetical-protein
MYQESRALLMAMEDKVTEYQRLLENQILELIEEKERELNESISKEYKKIADEWVDQQMDWFFSAEQILSEKLIGIERMVSEIKNELKTQIALAVSSRLTKLSQSENLINHLIDVLHAELEDEAKTLKIQRQEMADGVALTIENSDSVVSINTQKIVEELRGVLESI
>NZ_CP022472.1|WP_005499543.1|1428259_1430146_-|FHIPEP-family-type-III-secretion-protein
MISKLRNSTLLFNPSSVMIAFLLPTIILVTLPGVVIDFFLLISFVSSALLLIIMLENDQPLKVTFLPTMVLLLTTFRLLLSIATTRNIIANEDVGRVIETIGEFVMGGNLISGLLIFVIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLGTENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGDGLVSQIPSLLLSMACGVYLTRIKGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLLNPTLMYVCLPLAVLCVVMALLLWKKNGNNSVAVKFEPEGSGVFESLKFVFRDGQYQSLIKKRLKAVEERVWGQALGEPAVLVDPDLDVDIAVYISGIQTYQFSQNSAEGIVEILNDDTFNLHDDLSSNLDEIISYFIQTRLIEKYNLQHSCNIVAELASQSEIMKSEIDSAVGLNRVHDVLKQMIRSPEFYLDRVSFFESLIYWSRVEHDPRNWLTRIRHQARYEITARLLNSDGKVHVMLLSPELTEEISGYVAGEFEDFERLIEIQKALKSEIKRLLLSHKNRPVLVVNDNELNVVKTFVQQVMSTLIVCSHSDIVDNNCISSSEVINIQ
>NZ_CP022472.1|WP_005499541.1|1427207_1428248_-|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein
MESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFVFCIIIVITLHSLFEYTNEWISSAIQSDINVGIDNMFSILGYTIGFLAFFKIVMAVFEWVMINKSVISTEALGFKIDKINPVNGAKNIFGVEAISRSSRKVLELLFLLFLLKYVFDVLGAELYKLNEINNYPYFIYYLLYSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNELKETEGSPEIKYERRRRMREVMESPVTKGRKPTFAVANPTHILVPISYEPKIEKIPVVLKISTESLALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQKNVKKK
>NZ_CP022472.1|WP_005499540.1|1426375_1427224_-|OmpA-family-protein
MLRKNKFVFIGFASLLTACSGPIREDNLILDIDWEPDIYNMVVTHVSDPNNFRFIVHQAPRYIENSPHEQACLEIDQPLEPNRYYLANLNTYGLTEVWTCEGEYWLYSNLVDPHKSLGTGLNVWDPRNYRSNGKHSSGNGDRNSTNGQGYPLFGNSGIDGLDAYLIGEGNLRLVFENLFPVNEYELTQASKETLLQLIQKLKNLPVKELVIYGIADSSGSYAKNRVLADRRALAVRDFLVEEGLRNVSIAIRGTVENGLETAEQRVKQRRFSIDVRLKSNGK
>NZ_CP022472.1|WP_005499538.1|1425993_1426386_-|hypothetical-protein
MANRKFQLLMSEFAQLTNGKSINLNADQSLACHYSGMDCYVEDGARIGLHGQILVIVPIVKKLAARQQVRLNSSFDLTRDGYVAEVKSYGCCFVRHLVAPEHPQVLLKFLSETVSVVNKLKSEITKNVAS
>NZ_CP022472.1|WP_005499536.1|1425008_1426007_-|hypothetical-protein
MWLAEFVEGPLKGVAFPFEPTLVFSGNEQSDNDKTVPIPEYLQSDESFELTLENGSPVLKQTSKTLSLVQNRVFQYKGVSLFVYRKGERNPNLRRYYFKRYRSVLLVTLLAHVSVAIVGYGINNFHQGEEFGDRISAIGSGYISEGVLYVTGKEDVKNLPSSWKNFIKPLASDKYEQVSQFNVAVVSEYSGKPLDMKIVRKDGYDEIRVDTKEDDNHFMALLGRHGISFYRDENDNWYVSDPTKVSELLKGAGLSHMLASVKSRADNAIIIPDDQFPYSIFYSSHSGRYLFDESKRYWEGSEVPKLGVIKSIAQDKVVFFDGEHTRVYLIDV
>NZ_CP022472.1|WP_005499534.1|1424345_1424996_-|hypothetical-protein
MMNSSISGFSVPSDVPLTQRNEVVAEQLTQQSPIIQRAASSVPYSDVRASVKDPLDLIDELLSRYLDQQTVRAKTMADTIETWSNAIAEINRIWGLVMQDNMNHTNPNDNNTRTPLGDSVSGKHLEDIDRIIREELKDDRGIAAITGLDLAASKTHRVSYTDLQSLNATMTAYCDTIQVDIDTEQQKFKNVMTEITSAQEEIRDVRRVIVTLSQGG
>NZ_CP022472.1|WP_005484480.1|1424127_1424343_-|FliM/FliN-family-flagellar-motor-switch-protein
MKIAIDVVIAHCSMTLEELLHLQKGNMIKIDDFVQSEVMLKSGNELIATGTLIKIDDQYGVSIDNVNQVKS
>NZ_CP022472.1|WP_021450638.1|1423350_1423884_-|winged-helix-turn-helix-domain-containing-protein
MLRNYLLGNQVIFDTLKREVISPEQIISLGGRESAILKLLCENANVVISKEDIQDKVWGKVLVSETSLTKAISNLRKSLQMLEGVMCEIKTIPKEGYMLILEDENLGLMVTEDAPPLEVKRIESKDVAMIKQPISHSKPMVQREPANMVDPKWYIIGVFSAALLSSMISTTLVTLIK
>NZ_CP022472.1|WP_021450639.1|1421708_1421990_-|hypothetical-protein
MSTIGGVAGRALAEDGALKTTEVGTEFEAFVTEADTAVEEFITQKSQGGSLSLSAGESLQLQRLMGDQSITVQTGTATLKSIKDSISSAARNI
>NZ_CP022472.1|WP_021484590.1|1438078_1438363_-|hypothetical-protein
MEYIEKFLLQLEKNEEYVFESCLDDFIIPICPFFQLVHVINLNETLQKLKTIEESCFGLLVRDGGYVSLAISEQNFRQEEVRRNILQLLEIMRF
>NZ_CP022472.1|WP_005499579.1|1438364_1438931_-|hypothetical-protein
MVDKLCVIEQKNITKAVFNKVAPIVGKVFDNDEIKLDFGELIFHLPKSESLIAMNLVNFGIEAKVYLCEQEALRLLGVEVKYLDEKYISYLITQNLSRIGLHFDKLVSWDEVENVSLIHSMLSFGEQKIDAIVDIESLKAEQAYMAMKENNISRHLNVKTELSLFETYLDSSEISSLTNDDVVLVYPK
>NZ_CP022472.1|WP_005499582.1|1438939_1439344_-|hypothetical-protein
MQKKIAHLKIKNKPLDPYEILKNKSNRISWNGLSDSEKFVDKENLMDWFVLLRDYSEDTVKAVVIDGLLENQFHKVTFILQLAMTPDFQSLGSKQVYELLYDFVSRTPKSVLAWIDEKDYQMSRDVLALLSRNR
>NZ_CP022472.1|WP_021448321.1|1439306_1439873_-|hypothetical-protein
MRPVSFVTPLRAERISEVSSSRSIREEEKPKRVRDVKDSERQEKKRHRVFRIKKAPMTPQQQRQFAKQLNSYQLRAMRDWYSFSESLDIESLNDAQKWVLHAVNQSQHLYPKTLRREIRAYLNGVSLDQFASLEEAPDGATIQQLLAYEDYLEGILAMLVLCRRYDEREKKRKLRQNAEENCSSENKE
>NZ_CP022472.1|WP_005499586.1|1439923_1440655_-|hypothetical-protein
MKPISINAAASANVSAQEATNHNAPVSVDVQQWQQFDSSLEKASQGGVSMSELLALLSQIISSAKELRSQVMQSRIDEAKATTDLAIVLADDRRSDAQMKFGISLASSVMNMALTTASSVRIGQTKTLKDKHLSSMSGNGDMKVSDLSMKDLNKFTAQLQQARTAKYNTVSQSGNMANSMVGNANDIINAEEVKHQEEGTASKQLKEKVDAHLDQFIQELTTEAVKLNEILDLMARASLVTNR
>NZ_CP022472.1|WP_025548353.1|1440668_1441715_-|hypothetical-protein
MRSSLVSNLEPVALWSQANEEIEKAQNKPQEFAESGAVVPGQPLPGSSVSLNDLWRVIKDSMKDVAEAVSGTGQENVATKKGLIQIQKDSQIEMLNERASQLEEQKKAEQKQGIWGKIAMALSFVAAIIMAPFNPVMAAVMIGGLIASLVIPKIADEIMKAAGVDEKTRGFVKLGLDLAIGIGSAILSFNPANIASSAGKAIAGGAAKVGAFVSKTMNAAKALKSFSSISSKAGSIVNKMKKTIEPLLNKIQDFAKGGQMATSRISQASSVASNITSTVSMGYGVKSADVAKDLEIAQAKQDELQTRIDQVLMMLEQALRSVSHAFESLFKTNEDQREFTKAMSSIHM
>NZ_CP022472.1|WP_005499593.1|1441804_1442929_-|hypothetical-protein
MKVNSSISSSGAAPLTGTESQTGNQGVVESVTNLEQALSLLESDSLNVADLKTLSDTVNNQRSALNLMSSRNAEADIANSLNGAIDQYAKELELIQGWTNGGKDMFNAANQVMFNTIISSGNVSGIYLEDIFQIAIIDFMANHSNIDPTVFEAMRHFLESTGTGSHGVHEAWGGSMFSQKTDLVWDYMKNNASANSLSQEILNYLDTTAGGKQALQSQYSTQFDSSEGYAFNTGFDKNNGLSPMLRLTLMSNYLKDNPDIKQAEMEIFLKGSFGEIESFVQTTTKESLEDLLAKDSAWRVVSNGAGKNIIDYIGVGLDSTFFVNLYQKFPPRVLSDEDTTNINRIGDTVKMIQQTLKYWIQIMRDERMAVARNI
>NZ_CP022472.1|WP_005499594.1|1442950_1443439_-|hypothetical-protein
MAETLNISSDLEEDFFELLEGRLYSERLKEIRKKENISVETLMAIYALGEEFYNRFLMKEAEVIFTAYMALCPHDHRGPGSLASIYLEQGKFNKALEMLNIVKVYPTADFDETILNIALCHYKLKEHNNAAVMLILVKRDNLNEYYSKRYDYLKRQLNPYLQ
>NZ_CP022472.1|WP_005484494.1|1443471_1443930_-|hypothetical-protein
MKKYNRVYQRVLHYYLSKAQLAEEEFLVLTTLTEEEIESFFLDRIKTVRKVIYLLGQIVEYQKSKMDIDYLSWVGMQALIPRELCLISDSIGLHTQIDVTDKNSLGLGLLSSIDRRKAIVWGLRLKHSAPEQKLTVDSGARLRYLINRISQS
>NZ_CP022472.1|WP_025548601.1|1443931_1444468_-|type-III-secretion-protein
MRRIWFYLVISLMLAGCGTQGQSKIATFESADLANKVVVMLNKHQIPSTLSVQKEWYSVSVDESNEMKARELLTTFNFYFEKEDLNDLLESKFASLSKLEQVKSNFLQSREISNKLSVMPNIFRVSVVVTGSQKKRISVLILSLSELDSENKANIEQFLKGTLESEDKLTVSYFVQAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022473

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP022472

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection