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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022122 Fusobacterium nucleatum subsp. nucleatum strain ChDC F317 chromosome, complete genome 5 crisprs WYL,PD-DExK,DEDDh,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,DinG,csa3 0 5 3 0

Results visualization

1. NZ_CP022122
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022122_2 360022-360123 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022122_1 359420-359741 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022122_3 893827-894854 Unclear NA
15 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022122_4 1350077-1350324 Orphan NA
3 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022122_5 2138597-2138788 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022122_3 3.15|894788|37|NZ_CP022122|CRISPRCasFinder,CRT,PILER-CR 894788-894824 37 KR131710 Fusobacterium phage Funu1, complete genome 22908-22944 0 1.0
NZ_CP022122_3 3.14|894722|36|NZ_CP022122|CRISPRCasFinder,CRT,PILER-CR 894722-894757 36 KR131710 Fusobacterium phage Funu1, complete genome 11814-11849 1 0.972
NZ_CP022122_3 3.1|893857|35|NZ_CP022122|CRISPRCasFinder,CRT 893857-893891 35 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 203121-203155 9 0.743
NZ_CP022122_3 3.1|893857|35|NZ_CP022122|CRISPRCasFinder,CRT 893857-893891 35 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 203161-203195 9 0.743
NZ_CP022122_3 3.9|894386|37|NZ_CP022122|CRISPRCasFinder,CRT,PILER-CR 894386-894422 37 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 746198-746234 10 0.73
NZ_CP022122_5 5.2|2138703|59|NZ_CP022122|PILER-CR 2138703-2138761 59 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 245267-245325 13 0.78
NZ_CP022122_5 5.2|2138703|59|NZ_CP022122|PILER-CR 2138703-2138761 59 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 245800-245858 15 0.746
NZ_CP022122_5 5.2|2138703|59|NZ_CP022122|PILER-CR 2138703-2138761 59 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 919928-919986 15 0.746

1. spacer 3.15|894788|37|NZ_CP022122|CRISPRCasFinder,CRT,PILER-CR matches to KR131710 (Fusobacterium phage Funu1, complete genome) position: , mismatch: 0, identity: 1.0

aaagcagcaaagataacaacagaatctcgtcctgttt	CRISPR spacer
aaagcagcaaagataacaacagaatctcgtcctgttt	Protospacer
*************************************

2. spacer 3.14|894722|36|NZ_CP022122|CRISPRCasFinder,CRT,PILER-CR matches to KR131710 (Fusobacterium phage Funu1, complete genome) position: , mismatch: 1, identity: 0.972

aaagatgactttatagatttattaaaatctgaaaga	CRISPR spacer
aaagatgactttatagatttattgaaatctgaaaga	Protospacer
***********************.************

3. spacer 3.1|893857|35|NZ_CP022122|CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 9, identity: 0.743

taaaaaaaattcaaaatgatgtatataaattaaaa	CRISPR spacer
tactttaaaatcaaaatgatttatataaattattg	Protospacer
**    *** ********** ***********  .

4. spacer 3.1|893857|35|NZ_CP022122|CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 9, identity: 0.743

taaaaaaaattcaaaatgatgtatataaattaaaa	CRISPR spacer
tactttaaaatcaaaatgatttatataaattattg	Protospacer
**    *** ********** ***********  .

5. spacer 3.9|894386|37|NZ_CP022122|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 10, identity: 0.73

tacatcatttttatatgaaccttttctatatttttct	CRISPR spacer
aactgattttttatatgaaccatttctataattattc	Protospacer
 **    ************** ******** ** *..

6. spacer 5.2|2138703|59|NZ_CP022122|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 13, identity: 0.78

-----cggtcaccatattattctggagcgggaaacgaggttcgaactcgcgacattcagc	CRISPR spacer
aactacgctcaccacat-----tggagcgggaaaccaggttcgaactggcgacattcagc	Protospacer
     ** ******.**     ************* *********** ************

7. spacer 5.2|2138703|59|NZ_CP022122|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 15, identity: 0.746

cggtcaccatattattctggagcgggaaacgaggttcgaactcgcgacattcagcttgg	CRISPR spacer
ggacgaacggggcttattggagcgggaaaccaggttcgaactggcgacattcagcttgg	Protospacer
 *.. * *. . . * .************* *********** ****************

8. spacer 5.2|2138703|59|NZ_CP022122|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 15, identity: 0.746

cggtcaccatattattctggagcgggaaacgaggttcgaactcgcgacattcagcttgg	CRISPR spacer
ggacgaacggggcttattggagcgggaaaccaggttcgaactggcgacattcagcttgg	Protospacer
 *.. * *. . . * .************* *********** ****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 678387 : 724718 59 Fusobacterium_phage(33.33%) integrase,transposase,tRNA,capsid,portal,terminase attL 694698:694714|attR 705812:705828
DBSCAN-SWA_2 728580 : 739536 14 Clostridium_phage(50.0%) terminase,tail,plate NA
DBSCAN-SWA_3 1092386 : 1099708 8 Prochlorococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage