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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022149 Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence 1 crisprs NA 0 1 1 0
NZ_CP022150 Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP022148 Enterobacter roggenkampii strain 704SK10 chromosome, complete genome 1 crisprs DEDDh,DinG,cas3,csa3,WYL,PD-DExK 0 4 6 0

Results visualization

1. NZ_CP022149
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022149_1 50290-50424 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP035636 Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence 100226-100264 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP017182 Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence 1315-1353 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP017182 Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence 1402-1440 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP031569 Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence 7815-7853 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP050011 Citrobacter sp. Y3 plasmid unnamed2, complete sequence 27572-27610 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP019840 Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence 70340-70378 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP022149 Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence 50338-50376 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP009855 UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence 14593-14631 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP008907 Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence 83191-83229 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP026851 UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1 65584-65622 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_LT991956 Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2 52487-52525 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP029719 UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence 1341-1379 0 1.0
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP012428 Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence 20127-20165 1 0.974
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NC_014107 Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence 48095-48133 1 0.974
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP046273 Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence 40032-40070 1 0.974
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP012169 Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence 40032-40070 1 0.974
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP042541 Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence 40032-40070 1 0.974
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP031723 Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence 50311-50349 1 0.974
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP042567 Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence 40032-40070 1 0.974
NZ_CP022149_1 1.1|50338|39|NZ_CP022149|CRISPRCasFinder 50338-50376 39 NZ_CP039454 Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence 72766-72804 2 0.949

1. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP035636 (Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

2. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

3. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

4. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP031569 (Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

5. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP050011 (Citrobacter sp. Y3 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

6. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP019840 (Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

7. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP022149 (Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

8. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

9. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

10. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP026851 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

11. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_LT991956 (Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

12. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP029719 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

13. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP012428 (Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

14. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NC_014107 (Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

15. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP046273 (Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

16. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP012169 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

17. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP042541 (Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

18. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP031723 (Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

19. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP042567 (Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

20. spacer 1.1|50338|39|NZ_CP022149|CRISPRCasFinder matches to NZ_CP039454 (Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence) position: , mismatch: 2, identity: 0.949

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtttcagaactcatccgtcaaccccgcc	Protospacer
************* ************* ***********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 13303 : 75157 52 Bacillus_phage(22.22%) integrase,transposase attL 72761:72776|attR 80183:80198
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP022148
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022148_1 2017910-2018539 Orphan I-F
10 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022148_1 1.9|2018119|32|NZ_CP022148|CRISPRCasFinder,CRT 2018119-2018150 32 NZ_CP015507 Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence 339556-339587 7 0.781
NZ_CP022148_1 1.15|2018480|32|NZ_CP022148|CRISPRCasFinder,CRT 2018480-2018511 32 KC292029 Halovirus HCTV-1, complete genome 60196-60227 7 0.781
NZ_CP022148_1 1.10|2018179|32|NZ_CP022148|CRISPRCasFinder,CRT 2018179-2018210 32 NZ_HG938354 Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence 1463327-1463358 9 0.719
NZ_CP022148_1 1.10|2018179|32|NZ_CP022148|CRISPRCasFinder,CRT 2018179-2018210 32 NZ_HG938356 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence 1378036-1378067 9 0.719
NZ_CP022148_1 1.14|2018420|32|NZ_CP022148|CRISPRCasFinder,CRT 2018420-2018451 32 NZ_CP033514 Vibrio cholerae strain E4 plasmid pVCR94, complete sequence 50380-50411 10 0.688
NZ_CP022148_1 1.14|2018420|32|NZ_CP022148|CRISPRCasFinder,CRT 2018420-2018451 32 NC_023291 Vibrio cholerae strain BI144 plasmid pVCR94deltaX, complete sequence 73513-73544 10 0.688

1. spacer 1.9|2018119|32|NZ_CP022148|CRISPRCasFinder,CRT matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 7, identity: 0.781

aggaggaacttatggcaattttagtggaagct---	CRISPR spacer
aggaggcacttatgtcaattttaat---aacttgg	Protospacer
****** ******* ********.*   *.**   

2. spacer 1.15|2018480|32|NZ_CP022148|CRISPRCasFinder,CRT matches to KC292029 (Halovirus HCTV-1, complete genome) position: , mismatch: 7, identity: 0.781

--gcaagggatggcaaaagtgatggcgtcgttcg	CRISPR spacer
cgacaacga--ggcgaaagtgatggtgtcgttcg	Protospacer
  .*** *.  ***.**********.********

3. spacer 1.10|2018179|32|NZ_CP022148|CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 9, identity: 0.719

ggcaatggtccggacggtcgccctgaattcca	CRISPR spacer
ggcaatggtccggtcggccgcccatttgctca	Protospacer
************* ***.*****     ..**

4. spacer 1.10|2018179|32|NZ_CP022148|CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 9, identity: 0.719

ggcaatggtccggacggtcgccctgaattcca	CRISPR spacer
ggcaatggtccggtcggccgcccacttgctca	Protospacer
************* ***.*****     ..**

5. spacer 1.14|2018420|32|NZ_CP022148|CRISPRCasFinder,CRT matches to NZ_CP033514 (Vibrio cholerae strain E4 plasmid pVCR94, complete sequence) position: , mismatch: 10, identity: 0.688

aaggcattcaaaagcctgtaaggggacgttat	CRISPR spacer
gctgttggcaaaagcctggtaggggacgttaa	Protospacer
.  *.   **********  *********** 

6. spacer 1.14|2018420|32|NZ_CP022148|CRISPRCasFinder,CRT matches to NC_023291 (Vibrio cholerae strain BI144 plasmid pVCR94deltaX, complete sequence) position: , mismatch: 10, identity: 0.688

aaggcattcaaaagcctgtaaggggacgttat	CRISPR spacer
gctgttggcaaaagcctggtaggggacgttaa	Protospacer
.  *.   **********  *********** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 372538 : 381906 9 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_2 493647 : 535470 61 Salmonella_phage(43.18%) integrase,tail attL 502328:502343|attR 510607:510622
DBSCAN-SWA_3 609905 : 660655 62 Cronobacter_phage(17.95%) integrase,transposase,tail,terminase attL 609337:609364|attR 661849:661876
DBSCAN-SWA_4 1353695 : 1363772 9 Klosneuvirus(16.67%) NA NA
DBSCAN-SWA_5 1863591 : 1961062 103 Enterobacteria_phage(27.78%) terminase,protease,capsid,holin,portal,integrase,tRNA,head,tail attL 1861465:1861482|attR 1960871:1960888
DBSCAN-SWA_6 4687892 : 4732655 58 Salmonella_phage(88.37%) terminase,lysis,capsid,portal,integrase,tRNA,head,tail,plate attL 4689282:4689328|attR 4721524:4721570
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage