CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022100	Vibrio anguillarum strain S3 4/9 chromosome 2, complete sequence	0 crisprs	cas3,RT,PD-DExK,DEDDh,cas9,csa3,cas5f,cas7f,cas6f	0	0	1	0
NZ_CP022099	Vibrio anguillarum strain S3 4/9 chromosome 1, complete sequence	0 crisprs	DEDDh,cas3,csa3,PD-DExK,DinG,RT,csx1	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

391253 : 468085

Vibrio_phage(26.67%)

tRNA,integrase,lysis,transposase,tail,plate,protease,portal

attL 384815:384830|attR 473768:473783

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
384815:384830	attL	NA	NA	NA	NA
WP_088729447.1\|391253_392450_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	3.3e-56	30.5
WP_088729448.1\|392635_393304_-	hypothetical protein	NA	NA	NA	NA
WP_088729449.1\|393305_394553_-	AAA family ATPase	C7BGE8	Burkholderia_phage	7.7e-08	41.6
WP_088729450.1\|394900_395884_-	hypothetical protein	NA	NA	NA	NA
WP_017042942.1\|396198_396402_-	hypothetical protein	NA	NA	NA	NA
WP_088729451.1\|396479_396863_-	hypothetical protein	NA	NA	NA	NA
WP_088729452.1\|396859_397117_-	hypothetical protein	NA	NA	NA	NA
WP_088729453.1\|397312_397573_-	hypothetical protein	NA	NA	NA	NA
WP_157724207.1\|397801_398497_-	hypothetical protein	NA	NA	NA	NA
WP_088729455.1\|398538_399207_-	LexA family transcriptional regulator	K7PH71	Enterobacterial_phage	1.1e-58	53.4
WP_088729456.1\|399298_399544_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017042100.1\|399579_400128_+	hypothetical protein	NA	NA	NA	NA
WP_088729457.1\|400303_401104_+	hypothetical protein	A0A067ZIA1	Vibrio_phage	1.6e-35	54.9
WP_088729458.1\|401106_401841_+	DNA biosynthesis protein	S4TNF5	Salmonella_phage	3.7e-42	43.9
WP_088729459.1\|401840_402473_+	hypothetical protein	A0A2I7RNS2	Vibrio_phage	9.4e-63	57.7
WP_088729460.1\|402473_403058_+	hypothetical protein	NA	NA	NA	NA
WP_088729461.1\|403249_404299_-	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	4.2e-108	63.0
WP_088729462.1\|404461_404677_-	hypothetical protein	NA	NA	NA	NA
WP_088729463.1\|405047_406109_-	hypothetical protein	NA	NA	NA	NA
WP_088729464.1\|406111_406450_-	hypothetical protein	NA	NA	NA	NA
WP_088729465.1\|406556_407333_-	hypothetical protein	NA	NA	NA	NA
WP_017042796.1\|408074_408269_+	hypothetical protein	A0A1V1FD92	Vibrio_phage	1.4e-14	64.5
WP_088729466.1\|408252_408741_+	lysozyme	A0A1U9GSH3	Vibrio_phage	5.0e-80	90.7
WP_088729467.1\|408713_409205_+\|lysis	lysis protein	A0A1V0E843	Vibrio_phage	1.4e-16	38.4
WP_017042799.1\|409541_410012_+	DUF1441 family protein	NA	NA	NA	NA
WP_088729468.1\|409992_412080_+	DNA packaging protein	A0A219YAX2	Aeromonas_phage	9.9e-125	37.4
WP_017042801.1\|412076_412295_+	hypothetical protein	NA	NA	NA	NA
WP_088729469.1\|412287_413787_+\|portal	phage portal protein	A0A0A0YUB7	Pseudomonas_phage	2.1e-76	34.2
WP_088729470.1\|413779_415954_+\|protease	Clp protease ClpP	F8J1B3	Lactobacillus_phage	1.2e-24	32.3
WP_088729471.1\|416026_416365_+	hypothetical protein	NA	NA	NA	NA
WP_088729472.1\|416367_416703_+	hypothetical protein	NA	NA	NA	NA
WP_088729473.1\|416680_417205_+\|tail	phage tail protein	NA	NA	NA	NA
WP_064626801.1\|417170_417677_+	hypothetical protein	NA	NA	NA	NA
WP_088729812.1\|417687_418338_+\|plate	phage baseplate assembly protein V	A2I2X5	Vibrio_virus	1.1e-16	39.2
WP_017042809.1\|418334_418670_+	hypothetical protein	NA	NA	NA	NA
WP_088729474.1\|418666_419656_+\|plate	baseplate J protein	Q6R4V6	Vibrio_virus	1.6e-56	38.8
WP_088729475.1\|419639_420254_+\|tail	phage tail protein	NA	NA	NA	NA
WP_088729476.1\|420246_421455_+\|tail	phage tail protein	A0A1V0E875	Vibrio_phage	3.2e-11	61.3
WP_088729477.1\|421451_422015_+	hypothetical protein	R9TMQ2	Vibrio_phage	5.1e-36	72.4
WP_088729478.1\|422072_422312_+	hypothetical protein	NA	NA	NA	NA
WP_088729479.1\|422311_423481_+\|tail	phage tail protein	Q6R4W2	Vibrio_virus	6.2e-84	43.2
WP_088729480.1\|423473_423950_+	hypothetical protein	NA	NA	NA	NA
WP_088729481.1\|424014_424737_+	hypothetical protein	NA	NA	NA	NA
WP_088729482.1\|424848_427578_+\|tail	phage tail tape measure protein	A2I2Y1	Vibrio_virus	3.7e-47	34.5
WP_088729483.1\|427580_427946_+	hypothetical protein	NA	NA	NA	NA
WP_017043788.1\|427945_428149_+	hypothetical protein	NA	NA	NA	NA
WP_088729484.1\|428148_429126_+	hypothetical protein	A2I2Y5	Vibrio_virus	1.8e-52	35.2
WP_064626822.1\|429125_430373_+\|integrase	site-specific integrase	A0A067ZJC5	Vibrio_phage	9.0e-57	34.6
WP_088729486.1\|431005_431899_+	hypothetical protein	NA	NA	NA	NA
WP_010319593.1\|432153_434082_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.8e-123	36.6
WP_080569453.1\|434085_434637_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.2e-13	39.0
WP_010319591.1\|434740_434935_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_010319590.1\|434976_435330_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_017043784.1\|435401_436364_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	7.6e-56	40.8
WP_157724208.1\|436617_437124_+	hypothetical protein	NA	NA	NA	NA
WP_017045526.1\|437788_438325_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_157724208.1\|438471_438978_+	hypothetical protein	NA	NA	NA	NA
WP_088729813.1\|439090_439747_+	hypothetical protein	NA	NA	NA	NA
WP_088729489.1\|439896_440313_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_088729490.1\|440469_441006_+	GNAT family N-acetyltransferase	D0R097	Streptococcus_phage	7.1e-11	30.9
WP_017045519.1\|441153_441657_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.0e-15	41.8
WP_080536237.1\|441875_442166_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_080478881.1\|442190_442310_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_088729491.1\|442866_443553_+	DUF4145 domain-containing protein	A0A1L2JZ52	Aeribacillus_phage	7.4e-29	33.7
WP_088729492.1\|444133_444670_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_088729493.1\|447336_448293_+	hypothetical protein	NA	NA	NA	NA
WP_017045395.1\|448422_448839_+	VOC family protein	NA	NA	NA	NA
WP_017022467.1\|448978_449359_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_088729814.1\|449992_451513_+	hypothetical protein	NA	NA	NA	NA
WP_157724239.1\|451500_451665_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_088729494.1\|452182_452734_+	hypothetical protein	NA	NA	NA	NA
WP_088729495.1\|452887_453535_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_088729496.1\|453672_454215_+	damage-inducible protein DinB	NA	NA	NA	NA
WP_088729497.1\|454550_454838_+	hypothetical protein	NA	NA	NA	NA
WP_088729498.1\|454961_455282_+	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_088729499.1\|455329_455467_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_088729500.1\|455502_456000_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_088729501.1\|456134_456800_+	hypothetical protein	NA	NA	NA	NA
WP_088729502.1\|457471_458068_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_088729504.1\|458741_459374_+	type B chloramphenicol O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	6.4e-27	39.8
WP_088729505.1\|459529_460168_+	thiamine biosynthesis protein ThiJ	NA	NA	NA	NA
WP_088729506.1\|460283_460823_+	adenylate kinase	A0A097BYE2	Leuconostoc_phage	3.3e-16	40.2
WP_088729507.1\|460971_461286_+	hypothetical protein	NA	NA	NA	NA
WP_088729508.1\|461511_462282_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_064626929.1\|463876_464296_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_081265623.1\|464302_464437_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_064626923.1\|464916_465426_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_088729816.1\|465416_465533_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_047691184.1\|465568_466039_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_088729510.1\|467116_468085_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.0e-43	38.1
473768:473783	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP022099

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

445862 : 453102

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010320454.1\|445862_446609_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-68	54.5
WP_088728605.1\|446608_447235_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.1e-38	54.5
WP_088728606.1\|447234_448173_+	murein hydrolase activator NlpD	I3PV79	Clostridium_phage	6.0e-13	32.8
WP_017047531.1\|448245_449247_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	3.5e-35	34.8
WP_088728607.1\|449379_451968_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.8e-35	21.0
WP_088728608.1\|452211_453102_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	9.9e-58	40.8

DBSCAN-SWA_2

725008 : 732079

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013857499.1\|725008_726223_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	2.4e-30	31.4
WP_010320409.1\|726279_726663_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.8e-53	78.2
WP_010320408.1\|726725_727049_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.6e-26	53.3
WP_026029095.1\|727115_727631_+	co-chaperone HscB	NA	NA	NA	NA
WP_088728657.1\|727652_729506_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.5e-111	41.6
WP_010320405.1\|729517_729856_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_010320404.1\|729906_730101_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_026029096.1\|730285_731581_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.1e-33	34.5
WP_013857494.1\|731653_732079_+	nucleoside-diphosphate kinase	K7YW26	Megavirus	2.7e-21	41.4

DBSCAN-SWA_3

1432239 : 1441876

Vibrio_phage(81.82%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088728839.1\|1432239_1432605_+	phage protein	A0A1W6UG37	Vibrio_phage	2.3e-37	68.1
WP_088728840.1\|1432629_1433145_-	AAA family ATPase	NA	NA	NA	NA
WP_088728841.1\|1433141_1433546_-	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	5.3e-27	46.4
WP_088728842.1\|1433523_1434582_-	N-acetyltransferase	Q6SE88	Lactobacillus_prophage	2.7e-70	42.5
WP_088728843.1\|1435333_1436692_-	toxin	R9TQ09	Vibrio_phage	6.7e-183	67.7
WP_088728844.1\|1436694_1437039_-	DUF2523 domain-containing protein	R9TRT6	Vibrio_phage	2.4e-20	44.2
WP_088728845.1\|1437050_1438421_-	hypothetical protein	G8IRU9	Vibrio_phage	3.0e-29	45.8
WP_088728846.1\|1438550_1438772_-	hypothetical protein	R9TRU5	Vibrio_phage	2.9e-11	62.7
WP_088728848.1\|1439027_1439393_-	DUF1293 domain-containing protein	R9TRB6	Vibrio_phage	7.1e-47	76.7
WP_088729325.1\|1439399_1440590_-	replication initiation factor family protein	R9TNS0	Vibrio_phage	1.8e-171	72.0
WP_088728849.1\|1440682_1440880_-	hypothetical protein	R9TRU0	Vibrio_phage	4.3e-22	76.6
WP_088728850.1\|1440882_1441122_-	hypothetical protein	NA	NA	NA	NA
WP_088728851.1\|1441124_1441340_-	hypothetical protein	NA	NA	NA	NA
WP_088728852.1\|1441507_1441876_+	hypothetical protein	Q858Q3	Vibrio_phage	1.9e-47	76.9

DBSCAN-SWA_4

2218584 : 2225208

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026027639.1\|2218584_2219055_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.4e-32	48.0
WP_013856195.1\|2219263_2220373_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	9.7e-63	39.3
WP_010320134.1\|2220461_2221118_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.5e-34	38.0
WP_017047324.1\|2221119_2222217_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.8e-48	37.1
WP_010320136.1\|2222223_2222673_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_081245041.1\|2222804_2224055_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	9.5e-99	48.7
WP_038148735.1\|2224068_2225208_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-62	42.0

DBSCAN-SWA_5

2759409 : 2766328

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064626031.1\|2759409_2760750_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-10	25.0
WP_064626032.1\|2760764_2761571_-	ABC transporter permease	NA	NA	NA	NA
WP_088729246.1\|2761727_2762273_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.9e-54	58.0
WP_088729247.1\|2762275_2763163_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.6e-38	35.7
WP_064626035.1\|2763159_2764038_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.4e-110	67.6
WP_088729248.1\|2764061_2765126_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.5e-102	54.0
WP_064626037.1\|2765386_2766328_+	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	6.6e-36	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022100

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP022099

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection