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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022165 Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP022164 Escherichia coli strain M160133 chromosome, complete genome 6 crisprs RT,csa3,PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG 2 21 11 0
NZ_CP022167 Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence 1 crisprs DEDDh 0 2 2 0
NZ_CP022166 Escherichia coli strain M160133 plasmid pM160133_p2, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP022165
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 58584 : 172350 106 Salmonella_phage(23.33%) protease,integrase,transposase attL 53232:53245|attR 139051:139872

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP022164
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022164_1 1078141-1079697 Unclear I-E
25 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022164_2 1105244-1105822 TypeI-E I-E
9 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022164_3 2298088-2298211 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022164_4 2990239-2990330 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022164_5 3152222-3152369 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022164_6 4095199-4095331 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP022164_1 1.19|1079269|33|NZ_CP022164|PILER-CR 1079269-1079301 33 NZ_CP022164.1 1058309-1058341 1 0.97
NZ_CP022164_1 1.44|1079270|32|NZ_CP022164|CRISPRCasFinder,CRT 1079270-1079301 32 NZ_CP022164.1 1058309-1058340 1 0.969

1. spacer 1.19|1079269|33|NZ_CP022164|PILER-CR matches to position: 1058309-1058341, mismatch: 1, identity: 0.97 

attccggctacttttgttgctccctgctcatcc	CRISPR spacer
attccagctacttttgttgctccctgctcatcc	Protospacer
*****.***************************

2. spacer 1.44|1079270|32|NZ_CP022164|CRISPRCasFinder,CRT matches to position: 1058309-1058340, mismatch: 1, identity: 0.969 

ttccggctacttttgttgctccctgctcatcc	CRISPR spacer
ttccagctacttttgttgctccctgctcatcc	Protospacer
****.***************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022164_4 4.1|2990265|40|NZ_CP022164|CRISPRCasFinder 2990265-2990304 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP022164_6 6.1|4095216|42|NZ_CP022164|PILER-CR 4095216-4095257 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 1 0.976
NZ_CP022164_3 3.1|2298131|38|NZ_CP022164|CRISPRCasFinder 2298131-2298168 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP022164_6 6.2|4095275|40|NZ_CP022164|PILER-CR 4095275-4095314 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 2 0.95
NZ_CP022164_2 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105578-1105609 32 MF547662 Clostridioides phage LIBA6276, complete genome 37369-37400 4 0.875
NZ_CP022164_2 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105578-1105609 32 MF547663 Clostridioides phage LIBA2945, complete genome 37369-37400 4 0.875
NZ_CP022164_2 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105578-1105609 32 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 83504-83535 5 0.844
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 NZ_AP022319 Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence 1203814-1203845 6 0.812
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 1167510-1167541 6 0.812
NZ_CP022164_1 1.27|1078231|32|NZ_CP022164|CRISPRCasFinder,CRT 1078231-1078262 32 NC_018022 Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence 373536-373567 7 0.781
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1175642-1175673 7 0.781
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 NZ_CP053709 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence 405764-405795 8 0.75
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 NZ_CP053710 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence 354033-354064 8 0.75
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 NZ_CP053712 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence 91487-91518 8 0.75
NZ_CP022164_1 1.38|1078902|32|NZ_CP022164|CRISPRCasFinder,CRT 1078902-1078933 32 NC_013085 Synechococcus phage S-RSM4, complete genome 75536-75567 8 0.75
NZ_CP022164_1 1.38|1078902|32|NZ_CP022164|CRISPRCasFinder,CRT 1078902-1078933 32 FM207411 Synechococcus phage S-RSM4 complete genome 75536-75567 8 0.75
NZ_CP022164_1 1.42|1079147|33|NZ_CP022164|CRISPRCasFinder,CRT 1079147-1079179 33 NZ_CP020331 Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence 413541-413573 8 0.758
NZ_CP022164_1 1.47|1079453|32|NZ_CP022164|CRISPRCasFinder,CRT 1079453-1079484 32 MN855615 Siphoviridae sp. isolate 320, complete genome 7076-7107 8 0.75
NZ_CP022164_1 1.47|1079453|32|NZ_CP022164|CRISPRCasFinder,CRT 1079453-1079484 32 NC_034248 Rhizobium phage RHEph10, complete genome 31444-31475 8 0.75
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 NC_031109 Gordonia phage Jumbo, complete genome 25391-25422 8 0.75
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 NZ_CP050093 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence 398774-398805 8 0.75
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 NC_008384 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence 565533-565564 8 0.75
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 NZ_CP042332 Bosea sp. F3-2 plasmid pB32-1, complete sequence 63515-63546 8 0.75
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 350647-350678 8 0.75
NZ_CP022164_2 2.4|1105456|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105456-1105487 32 NZ_CP008818 Ochrobactrum anthropi strain OAB plasmid 2, complete sequence 52227-52258 8 0.75
NZ_CP022164_2 2.4|1105456|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105456-1105487 32 NC_009671 Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence 23638-23669 8 0.75
NZ_CP022164_1 1.17|1079146|34|NZ_CP022164|PILER-CR 1079146-1079179 34 NZ_CP020331 Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence 413540-413573 9 0.735
NZ_CP022164_1 1.22|1079452|33|NZ_CP022164|PILER-CR 1079452-1079484 33 MN855615 Siphoviridae sp. isolate 320, complete genome 7075-7107 9 0.727
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 JX469828 Uncultured bacterium plasmid pRSB223, complete sequence 47585-47616 9 0.719
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 JX469829 Uncultured bacterium plasmid pB1, complete sequence 23183-23214 9 0.719
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 NZ_CP015881 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence 393203-393234 9 0.719
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 NC_008766 Acidovorax sp. JS42 plasmid pAOVO02, complete sequence 3158-3189 9 0.719
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 NZ_CP020331 Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence 569059-569090 9 0.719
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 NZ_MN366361 Bacterium plasmid pALTS33, complete sequence 54575-54606 9 0.719
NZ_CP022164_1 1.39|1078963|32|NZ_CP022164|CRISPRCasFinder,CRT 1078963-1078994 32 MW084976 Bacillus phage Kirov, complete genome 56770-56801 9 0.719
NZ_CP022164_1 1.45|1079331|32|NZ_CP022164|CRISPRCasFinder,CRT 1079331-1079362 32 NZ_CP016721 Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence 30466-30497 9 0.719
NZ_CP022164_1 1.45|1079331|32|NZ_CP022164|CRISPRCasFinder,CRT 1079331-1079362 32 NZ_CP016727 Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence 30464-30495 9 0.719
NZ_CP022164_1 1.49|1079575|32|NZ_CP022164|CRISPRCasFinder,CRT 1079575-1079606 32 MK448690 Streptococcus phage Javan169, complete genome 9831-9862 9 0.719
NZ_CP022164_1 1.49|1079575|32|NZ_CP022164|CRISPRCasFinder,CRT 1079575-1079606 32 MK448854 Streptococcus phage Javan146, complete genome 11811-11842 9 0.719
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 NZ_CP017077 Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence 555186-555217 9 0.719
NZ_CP022164_2 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105273-1105304 32 NZ_CP040819 Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence 471692-471723 9 0.719
NZ_CP022164_2 2.3|1105395|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105395-1105426 32 MT446414 UNVERIFIED: Escherichia virus TH43, complete genome 38100-38131 9 0.719
NZ_CP022164_2 2.5|1105517|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105517-1105548 32 MN812211 Flavobacterium phage vB_FspS_laban6-1, complete genome 21752-21783 9 0.719
NZ_CP022164_2 2.5|1105517|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105517-1105548 32 NZ_CP012534 Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence 26937-26968 9 0.719
NZ_CP022164_2 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105578-1105609 32 MN693584 Marine virus AFVG_25M163, complete genome 29591-29622 9 0.719
NZ_CP022164_2 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105578-1105609 32 MN103543 Pseudomonas phage vB_PaeM_PS119XW, complete genome 258501-258532 9 0.719
NZ_CP022164_2 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105578-1105609 32 MK599315 Pseudomonas phage PA1C, complete genome 257887-257918 9 0.719
NZ_CP022164_5 5.1|3152250|32|NZ_CP022164|CRISPRCasFinder 3152250-3152281 32 NZ_CP045060 Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence 9736-9767 9 0.719
NZ_CP022164_5 5.1|3152250|32|NZ_CP022164|CRISPRCasFinder 3152250-3152281 32 NZ_CP045053 Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence 9737-9768 9 0.719
NZ_CP022164_5 5.1|3152250|32|NZ_CP022164|CRISPRCasFinder 3152250-3152281 32 NZ_CP045057 Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence 9736-9767 9 0.719
NZ_CP022164_5 5.3|3152258|32|NZ_CP022164|PILER-CR 3152258-3152289 32 NZ_CP045060 Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence 9736-9767 9 0.719
NZ_CP022164_5 5.3|3152258|32|NZ_CP022164|PILER-CR 3152258-3152289 32 NZ_CP045053 Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence 9737-9768 9 0.719
NZ_CP022164_5 5.3|3152258|32|NZ_CP022164|PILER-CR 3152258-3152289 32 NZ_CP045057 Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence 9736-9767 9 0.719
NZ_CP022164_1 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT 1078841-1078872 32 NC_004929 Ruegeria sp. PR1b plasmid pSD20, complete sequence 67373-67404 10 0.688
NZ_CP022164_2 2.5|1105517|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105517-1105548 32 NZ_KX711616 Bacillus subtilis strain 72 plasmid pBS72, complete sequence 1474-1505 10 0.688
NZ_CP022164_2 2.5|1105517|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT 1105517-1105548 32 NC_023026 Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence 2981-3012 11 0.656

1. spacer 4.1|2990265|40|NZ_CP022164|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0 

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 6.1|4095216|42|NZ_CP022164|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976 

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

3. spacer 3.1|2298131|38|NZ_CP022164|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947 

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 6.2|4095275|40|NZ_CP022164|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95 

catggcgtagcaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *********************.*******

5. spacer 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 4, identity: 0.875 

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cttataaaa	Protospacer
*** ******************* .***** *

6. spacer 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 4, identity: 0.875 

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cttataaaa	Protospacer
*** ******************* .***** *

7. spacer 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844 

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cctataaaa	Protospacer
*** ******************* ..**** *

8. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 6, identity: 0.812 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgcggccatcgcgcagttcgtcgaacgccg	Protospacer
*  .* *********** ***********.**

9. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.812 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgttg	Protospacer
 ** .******************* * ***.*

10. spacer 1.27|1078231|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 7, identity: 0.781 

aatggcgctgccgatcgacaaatgggacctgg-	CRISPR spacer
gatggcgatgccgatggacaaat-gcacatgct	Protospacer
.****** ******* ******* * ** **

11. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.781 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgctg	Protospacer
 ** .******************* * **..*

12. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

13. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

14. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

15. spacer 1.38|1078902|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 8, identity: 0.75 

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

16. spacer 1.38|1078902|32|NZ_CP022164|CRISPRCasFinder,CRT matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 8, identity: 0.75 

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

17. spacer 1.42|1079147|33|NZ_CP022164|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 8, identity: 0.758 

cgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
ggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
 * * * ***.** *****************

18. spacer 1.47|1079453|32|NZ_CP022164|CRISPRCasFinder,CRT matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 8, identity: 0.75 

gccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
ccactgcccatcaaagcaccagcaagcgcata	Protospacer
 *  .*. ****** *** *************

19. spacer 1.47|1079453|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NC_034248 (Rhizobium phage RHEph10, complete genome) position: , mismatch: 8, identity: 0.75 

gccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
accgcggccatcaacgcagcagcataaggaga	Protospacer
.*****  **************** . * * *

20. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NC_031109 (Gordonia phage Jumbo, complete genome) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gacaataccatcgcggattttgtcgaacgtcg	Protospacer
   * ..******** ****.***********

21. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

22. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

23. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgacgccgtcgcgcatttcgtcgaccgcct	Protospacer
*  . ****.**************** **.*

24. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gccgccgccatcgcgcaattcggcgaatatgg	Protospacer
 * .************* **** ****..* *

25. spacer 2.4|1105456|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008818 (Ochrobactrum anthropi strain OAB plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75 

-caataacaccggcatttgtccacgacaatatt	CRISPR spacer
tcggcgacg-cggcatttgtccacgacacaatt	Protospacer
 *....**. ******************  ***

26. spacer 2.4|1105456|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NC_009671 (Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence) position: , mismatch: 8, identity: 0.75 

-caataacaccggcatttgtccacgacaatatt	CRISPR spacer
tcggcgacg-cggcatttgtccacgacacaatt	Protospacer
 *....**. ******************  ***

27. spacer 1.17|1079146|34|NZ_CP022164|PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.735 

gcgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
cggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
  * * * ***.** *****************

28. spacer 1.22|1079452|33|NZ_CP022164|PILER-CR matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 9, identity: 0.727 

ggccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
accactgcccatcaaagcaccagcaagcgcata	Protospacer
. *  .*. ****** *** *************

29. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to JX469828 (Uncultured bacterium plasmid pRSB223, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

30. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to JX469829 (Uncultured bacterium plasmid pB1, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

31. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
gccgggcagcgcccggcgcgcctcagccatca	Protospacer
 **.* ******************  . *.*

32. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NC_008766 (Acidovorax sp. JS42 plasmid pAOVO02, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

33. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
cggagcccgcgcccggcgcgccgcttcacatg	Protospacer
*  **** ************** ***.*  .

34. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

35. spacer 1.39|1078963|32|NZ_CP022164|CRISPRCasFinder,CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.719 

ttcgccaggtgttttcttttcccggtcagtca	CRISPR spacer
aattccaagtgttttcttttcccagtctataa	Protospacer
  . ***.***************.*** .* *

36. spacer 1.45|1079331|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NZ_CP016721 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence) position: , mismatch: 9, identity: 0.719 

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

37. spacer 1.45|1079331|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NZ_CP016727 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence) position: , mismatch: 9, identity: 0.719 

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

38. spacer 1.49|1079575|32|NZ_CP022164|CRISPRCasFinder,CRT matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 9, identity: 0.719 

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

39. spacer 1.49|1079575|32|NZ_CP022164|CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 9, identity: 0.719 

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

40. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.719 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tcgaccggcatcgcgcagttcgtcgctgagag	Protospacer
.****** ********* *******   .  *

41. spacer 2.1|1105273|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gagaccggcatcgcgcatttcctcgagcacat	Protospacer
  ***** ************* ****.*..

42. spacer 2.3|1105395|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to MT446414 (UNVERIFIED: Escherichia virus TH43, complete genome) position: , mismatch: 9, identity: 0.719 

atttcattaattttgcagagaagtgtctcgaa	CRISPR spacer
atttcatcaactttgcagagaaggaaatttat	Protospacer
*******.**.************ .  *. *

43. spacer 2.5|1105517|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 9, identity: 0.719 

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
aaataagaaaacaattttttcttaaaaaagat	Protospacer
. .******************  ****  .*.

44. spacer 2.5|1105517|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012534 (Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence) position: , mismatch: 9, identity: 0.719 

gcgtaagaaaacaattttttcag---aaaactaac	CRISPR spacer
gcgtaagaaaacagtttttccagttccagatg---	Protospacer
*************.*****.***    *.*.

45. spacer 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to MN693584 (Marine virus AFVG_25M163, complete genome) position: , mismatch: 9, identity: 0.719 

tacagtttccataaattcacctcgtttatata	CRISPR spacer
ggggatatctataaactcacctcgtttatatt	Protospacer
 . ..* **.*****.***************

46. spacer 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 9, identity: 0.719 

tacagtttccataaattcacctcgtttatata	CRISPR spacer
cgcttcttccatacattcacctcggttatgga	Protospacer
..*  .******* ********** ****. *

47. spacer 2.6|1105578|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 9, identity: 0.719 

tacagtttccataaattcacctcgtttatata	CRISPR spacer
cgcttcttccatacattcacctcggttatgga	Protospacer
..*  .******* ********** ****. *

48. spacer 5.1|3152250|32|NZ_CP022164|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719 

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

49. spacer 5.1|3152250|32|NZ_CP022164|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719 

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

50. spacer 5.1|3152250|32|NZ_CP022164|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719 

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

51. spacer 5.3|3152258|32|NZ_CP022164|PILER-CR matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719 

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

52. spacer 5.3|3152258|32|NZ_CP022164|PILER-CR matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719 

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

53. spacer 5.3|3152258|32|NZ_CP022164|PILER-CR matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719 

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

54. spacer 1.37|1078841|32|NZ_CP022164|CRISPRCasFinder,CRT matches to NC_004929 (Ruegeria sp. PR1b plasmid pSD20, complete sequence) position: , mismatch: 10, identity: 0.688 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgcctgcgcccggcgcgcctgccagaggg	Protospacer
*** *** *************** .. .*

55. spacer 2.5|1105517|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX711616 (Bacillus subtilis strain 72 plasmid pBS72, complete sequence) position: , mismatch: 10, identity: 0.688 

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
gacaaagaaaacaatcttttaagaaaagcttt	Protospacer
*   ***********.**** ****** .  .

56. spacer 2.5|1105517|32|NZ_CP022164|PILER-CR,CRISPRCasFinder,CRT matches to NC_023026 (Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence) position: , mismatch: 11, identity: 0.656 

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
acgaaagaaaacaactttttcagagtggcgtt	Protospacer
.** **********.*********. . .. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 95369 : 103237 9 Morganella_phage(33.33%) transposase NA
DBSCAN-SWA_2 106458 : 122807 22 Morganella_phage(36.36%) integrase attL 106801:106815|attR 129737:129751
DBSCAN-SWA_3 1760845 : 1770287 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_4 1894321 : 1931731 59 Enterobacteria_phage(48.28%) terminase,portal,holin,coat,integrase,lysis attL 1890735:1890749|attR 1897852:1897866
DBSCAN-SWA_5 2557472 : 2594821 41 Escherichia_phage(36.36%) tail,terminase,lysis NA
DBSCAN-SWA_6 2597987 : 2614748 23 Escherichia_phage(73.68%) integrase,tRNA attL 2589393:2589406|attR 2610894:2610907
DBSCAN-SWA_7 2729657 : 2792024 49 Pseudomonas_phage(14.29%) transposase,integrase,tRNA attL 2738910:2738924|attR 2774068:2774082
DBSCAN-SWA_8 3031113 : 3155211 114 Escherichia_phage(39.34%) terminase,tRNA,holin,head,portal,integrase,lysis,plate,tail,capsid,protease attL 3042906:3042926|attR 3141798:3141818
DBSCAN-SWA_9 3504976 : 3561207 69 Enterobacteria_phage(55.36%) portal,head,transposase,integrase,lysis,tail,capsid,protease attL 3513385:3513431|attR 3561221:3561267
DBSCAN-SWA_10 3875456 : 3941275 56 Shigella_phage(11.11%) transposase,plate,protease,tRNA NA
DBSCAN-SWA_11 4526090 : 4571508 47 Burkholderia_phage(30.0%) plate,tail,tRNA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP022167
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022167_1 1455-1629 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP015915 Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence 75929-75980 0 1.0
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP045191 Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence 1473-1524 0 1.0
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP041426 Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence 82643-82694 0 1.0
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP022167 Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence 1473-1524 0 1.0
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_KY515225 Escherichia coli strain 244 plasmid AnCo2, complete sequence 18820-18871 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP050499 Escherichia coli strain RM13322 plasmid pRM13322, complete sequence 69808-69859 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP024271 Escherichia coli strain F8111-1SC3 plasmid unnamed2 75091-75142 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP041423 Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence 18343-18394 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP019013 Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence 7833-7884 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 CP053753 Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence 75450-75501 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP024264 Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1 36034-36085 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP031136 Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence 104450-104501 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP034165 Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence 37107-37158 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_KY515224 Escherichia coli strain 243 plasmid AnCo1, complete sequence 106949-107000 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP023851 Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence 2684-2735 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_AP017612 Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence 1693-1744 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 CP022461 Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence 21469-21520 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP048306 Escherichia coli strain 9 plasmid p009_B, complete sequence 1473-1524 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP045278 Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence 1473-1524 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 MK125034 Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence 1693-1744 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 MK125035 Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence 1693-1744 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP027358 Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence 53858-53909 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NC_018651 Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence 62158-62209 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP010153 Escherichia coli strain D9 plasmid A, complete genome 71603-71654 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 CP025888 Escherichia coli strain 503046 plasmid p503046_111, complete sequence 1474-1525 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP027369 Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence 83052-83103 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP010144 Escherichia coli strain D4 plasmid A, complete genome 71681-71732 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP019027 Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence 83837-83888 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP019002 Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence 94584-94635 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 CP045933 Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence 1473-1524 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP041451 Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence 1473-1524 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP022085 Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence 96919-96970 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP014490 Escherichia coli strain G749 plasmid pG749_2, complete sequence 85749-85800 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NC_023916 Escherichia coli H89 plasmid pECOH89, complete sequence 1693-1744 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_LR213459 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2 1473-1524 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 MF554642 uncultured bacterium clone AA-105 plasmid pTIC, complete sequence 31095-31146 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 CP054387 Escherichia phage CMS-2020a, complete genome 1473-1524 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 CP053388 Escherichia phage CMS-2020a, complete sequence 1473-1524 1 0.981
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP025883 Escherichia coli strain 503440 plasmid p503440_100, complete sequence 64261-64312 2 0.962
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 CP025897 Escherichia coli strain 500465 plasmid p500465_152, complete sequence 137199-137250 2 0.962
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP012114 Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence 63380-63431 2 0.962
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP025894 Escherichia coli strain 503025 plasmid p503025_100, complete sequence 86948-86999 2 0.962
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP025868 Escherichia coli strain 504211 plasmid p504211_100, complete sequence 28916-28967 2 0.962
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP025870 Escherichia coli strain 503829 plasmid p503829_100, complete sequence 635-686 2 0.962
NZ_CP022167_1 1.1|1473|52|NZ_CP022167|PILER-CR 1473-1524 52 NZ_CP019283 Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence 70429-70480 2 0.962
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP050499 Escherichia coli strain RM13322 plasmid pRM13322, complete sequence 69721-69789 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP023851 Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence 2754-2822 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 CP022461 Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence 21539-21607 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP045191 Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence 1543-1611 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP045278 Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence 1543-1611 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP041426 Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence 82713-82781 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP027358 Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence 53928-53996 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP041423 Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence 18256-18324 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP019013 Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence 7746-7814 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 CP053753 Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence 75363-75431 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NC_018651 Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence 62228-62296 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP010153 Escherichia coli strain D9 plasmid A, complete genome 71673-71741 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 CP025888 Escherichia coli strain 503046 plasmid p503046_111, complete sequence 1544-1612 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP022167 Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence 1543-1611 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP027369 Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence 83122-83190 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP010144 Escherichia coli strain D4 plasmid A, complete genome 71751-71819 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP019002 Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence 94654-94722 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 CP045933 Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence 1543-1611 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP015915 Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence 75842-75910 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP022085 Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence 96989-97057 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_LR213459 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2 1543-1611 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 CP054387 Escherichia phage CMS-2020a, complete genome 1543-1611 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 CP053388 Escherichia phage CMS-2020a, complete sequence 1543-1611 9 0.87
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP025883 Escherichia coli strain 503440 plasmid p503440_100, complete sequence 64174-64242 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP025894 Escherichia coli strain 503025 plasmid p503025_100, complete sequence 87018-87086 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP025868 Escherichia coli strain 504211 plasmid p504211_100, complete sequence 28986-29054 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_AP017612 Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence 1763-1831 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP024271 Escherichia coli strain F8111-1SC3 plasmid unnamed2 75004-75072 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP025870 Escherichia coli strain 503829 plasmid p503829_100, complete sequence 705-773 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP048306 Escherichia coli strain 9 plasmid p009_B, complete sequence 1543-1611 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP019283 Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence 70499-70567 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP024264 Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1 35947-36015 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 CP025897 Escherichia coli strain 500465 plasmid p500465_152, complete sequence 137112-137180 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP019027 Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence 83908-83976 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP031136 Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence 104363-104431 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP041451 Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence 1543-1611 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP034165 Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence 37020-37088 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP012114 Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence 63294-63362 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 MF554642 uncultured bacterium clone AA-105 plasmid pTIC, complete sequence 31165-31233 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 MK125034 Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence 1763-1831 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 MK125035 Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence 1763-1831 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_CP014490 Escherichia coli strain G749 plasmid pG749_2, complete sequence 85819-85887 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NC_023916 Escherichia coli H89 plasmid pECOH89, complete sequence 1763-1831 10 0.855
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_KY515225 Escherichia coli strain 244 plasmid AnCo2, complete sequence 18733-18801 11 0.841
NZ_CP022167_1 1.2|1543|69|NZ_CP022167|PILER-CR 1543-1611 69 NZ_KY515224 Escherichia coli strain 243 plasmid AnCo1, complete sequence 106862-106930 11 0.841

1. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP015915 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence) position: , mismatch: 0, identity: 1.0 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
****************************************************

2. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP045191 (Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence) position: , mismatch: 0, identity: 1.0 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
****************************************************

3. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP041426 (Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence) position: , mismatch: 0, identity: 1.0 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
****************************************************

4. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP022167 (Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence) position: , mismatch: 0, identity: 1.0 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
****************************************************

5. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_KY515225 (Escherichia coli strain 244 plasmid AnCo2, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

6. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP050499 (Escherichia coli strain RM13322 plasmid pRM13322, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

7. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP024271 (Escherichia coli strain F8111-1SC3 plasmid unnamed2) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

8. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP041423 (Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

9. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP019013 (Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

10. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to CP053753 (Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

11. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP024264 (Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

12. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP031136 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

13. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP034165 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

14. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_KY515224 (Escherichia coli strain 243 plasmid AnCo1, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

15. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP023851 (Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

16. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_AP017612 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

17. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to CP022461 (Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

18. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP048306 (Escherichia coli strain 9 plasmid p009_B, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

19. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP045278 (Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

20. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to MK125034 (Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

21. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to MK125035 (Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

22. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP027358 (Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

23. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NC_018651 (Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

24. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP010153 (Escherichia coli strain D9 plasmid A, complete genome) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

25. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to CP025888 (Escherichia coli strain 503046 plasmid p503046_111, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

26. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP027369 (Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

27. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP010144 (Escherichia coli strain D4 plasmid A, complete genome) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

28. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP019027 (Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

29. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP019002 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

30. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to CP045933 (Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

31. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP041451 (Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

32. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP022085 (Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

33. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP014490 (Escherichia coli strain G749 plasmid pG749_2, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

34. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NC_023916 (Escherichia coli H89 plasmid pECOH89, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

35. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_LR213459 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

36. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to MF554642 (uncultured bacterium clone AA-105 plasmid pTIC, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

37. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to CP054387 (Escherichia phage CMS-2020a, complete genome) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

38. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to CP053388 (Escherichia phage CMS-2020a, complete sequence) position: , mismatch: 1, identity: 0.981 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

39. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP025883 (Escherichia coli strain 503440 plasmid p503440_100, complete sequence) position: , mismatch: 2, identity: 0.962 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

40. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 2, identity: 0.962 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

41. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP012114 (Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence) position: , mismatch: 2, identity: 0.962 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgccttaa	Protospacer
************************** *******************.*****

42. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP025894 (Escherichia coli strain 503025 plasmid p503025_100, complete sequence) position: , mismatch: 2, identity: 0.962 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

43. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP025868 (Escherichia coli strain 504211 plasmid p504211_100, complete sequence) position: , mismatch: 2, identity: 0.962 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

44. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP025870 (Escherichia coli strain 503829 plasmid p503829_100, complete sequence) position: , mismatch: 2, identity: 0.962 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

45. spacer 1.1|1473|52|NZ_CP022167|PILER-CR matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 2, identity: 0.962 

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttataccaataccggtacacattattcatgcaatgtcttaa	Protospacer
****************** ******* *************************

46. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP050499 (Escherichia coli strain RM13322 plasmid pRM13322, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

47. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP023851 (Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

48. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to CP022461 (Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

49. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP045191 (Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

50. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP045278 (Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

51. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP041426 (Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

52. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP027358 (Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

53. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP041423 (Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

54. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP019013 (Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

55. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to CP053753 (Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

56. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NC_018651 (Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

57. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP010153 (Escherichia coli strain D9 plasmid A, complete genome) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

58. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to CP025888 (Escherichia coli strain 503046 plasmid p503046_111, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

59. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP022167 (Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

60. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP027369 (Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

61. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP010144 (Escherichia coli strain D4 plasmid A, complete genome) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

62. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP019002 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

63. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to CP045933 (Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

64. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP015915 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

65. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP022085 (Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

66. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_LR213459 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

67. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to CP054387 (Escherichia phage CMS-2020a, complete genome) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

68. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to CP053388 (Escherichia phage CMS-2020a, complete sequence) position: , mismatch: 9, identity: 0.87 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

69. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP025883 (Escherichia coli strain 503440 plasmid p503440_100, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

70. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP025894 (Escherichia coli strain 503025 plasmid p503025_100, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

71. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP025868 (Escherichia coli strain 504211 plasmid p504211_100, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

72. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_AP017612 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
**** *******************************************************

73. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP024271 (Escherichia coli strain F8111-1SC3 plasmid unnamed2) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgatatagactctcgatatgctatcagcggta	Protospacer
******************************* ****************************

74. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP025870 (Escherichia coli strain 503829 plasmid p503829_100, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

75. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP048306 (Escherichia coli strain 9 plasmid p009_B, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

76. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

77. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP024264 (Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
**** *******************************************************

78. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

79. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP019027 (Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
**** *******************************************************

80. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP031136 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
agaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
*.**********************************************************

81. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP041451 (Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

82. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP034165 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
**** *******************************************************

83. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP012114 (Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

84. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to MF554642 (uncultured bacterium clone AA-105 plasmid pTIC, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

85. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to MK125034 (Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagataaactctcgatatgctatcagcggta	Protospacer
***********************************.************************

86. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to MK125035 (Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagataaactctcgatatgctatcagcggta	Protospacer
***********************************.************************

87. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_CP014490 (Escherichia coli strain G749 plasmid pG749_2, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagataaactctcgatatgctatcagcggta	Protospacer
***********************************.************************

88. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NC_023916 (Escherichia coli H89 plasmid pECOH89, complete sequence) position: , mismatch: 10, identity: 0.855 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagataaactctcgatatgctatcagcggta	Protospacer
***********************************.************************

89. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_KY515225 (Escherichia coli strain 244 plasmid AnCo2, complete sequence) position: , mismatch: 11, identity: 0.841 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgggcggtgatatagactctcgatatgctatcagcggta	Protospacer
***********************.******* ****************************

90. spacer 1.2|1543|69|NZ_CP022167|PILER-CR matches to NZ_KY515224 (Escherichia coli strain 243 plasmid AnCo1, complete sequence) position: , mismatch: 11, identity: 0.841 

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgggcggtgatatagactctcgatatgctatcagcggta	Protospacer
***********************.******* ****************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 83961 85 Salmonella_phage(90.28%) transposase,tail,integrase,terminase attL 20348:20367|attR 30655:30674
DBSCAN-SWA_2 87104 : 113107 28 Salmonella_phage(92.59%) tRNA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP022166
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 873 : 82931 54 Enterobacteria_phage(19.23%) integrase,transposase,protease NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage