CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023552	Escherichia coli strain FORC_043 plasmid pFORC43, complete sequence	0 crisprs	RT	0	0	1	0
NZ_CP016828	Escherichia coli strain FORC_043 chromosome, complete genome	7 crisprs	csa3,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	0	15	10	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22632 : 56012

Escherichia_phage(27.27%)

transposase,protease,integrase

attL 29510:29528|attR 38922:38940

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001388582.1\|22632_23373_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	3.5e-24	57.7
WP_001388581.1\|23657_24635_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	5.1e-100	58.9
WP_000422741.1\|25647_26073_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|26069_26420_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000555401.1\|28128_29262_-\|transposase	IS110-like element ISEc45 family transposase	NA	NA	NA	NA
29510:29528	attL	NA	NA	NA	NA
WP_000813634.1\|29872_30091_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_001159871.1\|30092_30398_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000016979.1\|30398_31208_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	7.8e-54	95.5
WP_000239529.1\|31345_31621_-	hypothetical protein	NA	NA	NA	NA
WP_000633911.1\|31614_32259_-	AAA family ATPase	A0A222YXS3	Escherichia_phage	8.8e-40	43.5
WP_001103689.1\|32487_33459_+	hypothetical protein	A0A222YXF2	Escherichia_phage	3.3e-67	43.3
WP_000340832.1\|33463_33856_+	hypothetical protein	NA	NA	NA	NA
WP_001189111.1\|35288_36797_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
WP_032142224.1\|37105_37477_+	hypothetical protein	NA	NA	NA	NA
WP_000702698.1\|39043_39796_+	aggregative adherence fimbria 3 chaperone Agg3D	NA	NA	NA	NA
38922:38940	attR	NA	NA	NA	NA
WP_001390764.1\|42409_42850_+	aggregative adherence fimbria 3 minor subunit Agg3B	NA	NA	NA	NA
WP_100138626.1\|43024_43525_+	aggregative adherence fimbria 3 major subunit Agg3A	NA	NA	NA	NA
WP_012602932.1\|43573_43801_+	hypothetical protein	NA	NA	NA	NA
WP_000869859.1\|45176_46205_+	class 1 isoprenoid biosynthesis enzyme	NA	NA	NA	NA
WP_001387337.1\|46208_46748_+	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_000769457.1\|49179_49977_-	aggregative adherence transcriptional regulator AggR	NA	NA	NA	NA
WP_077628273.1\|50311_50455_-	hypothetical protein	NA	NA	NA	NA
WP_000721276.1\|50816_51167_-	dispersin Aap	NA	NA	NA	NA
WP_000643555.1\|51897_52098_+	AggR-activated transcriptional regulator Aar	NA	NA	NA	NA
WP_001441124.1\|53624_53780_+\|protease	serine protease SepA autotransporter	NA	NA	NA	NA
WP_000546071.1\|54663_55413_+\|protease	serine protease	Q9LA58	Enterobacterial_phage	5.8e-51	58.2
WP_000239755.1\|55384_55621_-\|transposase	transposase	Q6H9S5	Enterobacteria_phage	2.0e-18	63.8
WP_001388597.1\|55763_56012_-\|transposase	IS3 family transposase	A0A0N7BVE9	Escherichia_phage	4.0e-25	83.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP016828

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016828_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016828_1

1118184-1119005

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

13 spacers

The CRISPR arrays of NZ_CP016828_1

>merge|NZ_CP016828|1|1118184-1119005|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCAGGAACTGGCGCTGCTGGAGCAAAACCCGGTATGAGTTCCCCGCGCCAGCGGGGATAAACCGAAAAGGGCCGCATTGACGGCCCTGTGTTATCGGAGTTCCCCGCGCCAGCGGGGATAAACCGTTAGCTGTTAGCCAAACATGTCGACCTGTTTGGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGTGGCGGTGGTGCTGTAATTCACACCGGTAGAGTTCCCCGCGCCAGCGGGGATAAACCGTATTCCCCCAGTCACCCCCGCCACCAAAATCAGAGTTCCCCGCGCCAGCGGGGATAAACCGATTTTTCAGACTCATCAAAATAATCCTTTAATGAGTTCCCCGCGCCAGCGGGGATAAACCGCATTGCCTTTGCAGCGTCTTTCCGATCATTCAGAGTTCCCCGCGCCAGCGGGGATAAACCGAACGTGAGATACGCCTCCCAGCGGCGCTCGGTGAGTTCCCCGCGCCAGCGGGGATAAACCGCCGTCAAACAGTATCACCGCGTTAACGCCCGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCACACACGTCGAGCTGGTGGGGGTTAATGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGACACCTCTACTGACGTTCCTGAACAAGAAGATGAGTTCCCCGCGCCAGCGGGGATAAACCGAAACCGGACGAGGGCGCGCTAAAACGTGATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCTCTCAATTTGTAACGTCTGCAATGTCAGGCGAGTTCCCCGTGCCAGCGGGGATAAACCA

>NZ_CP016828|1|1|1118184-1119004|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACC	AGGAACTGGCGCTGCTGGAGCAAAACCCGGTAT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GAAAAGGGCCGCATTGACGGCCCTGTGTTATCG
GAGTTCCCCGCGCCAGCGGGGATAAACC	GTTAGCTGTTAGCCAAACATGTCGACCTGTTTG
GAGTTCCCCGCGCCAGCGGGGATAAACC	GGGGTGGCGGTGGTGCTGTAATTCACACCGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GTATTCCCCCAGTCACCCCCGCCACCAAAATCA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GATTTTTCAGACTCATCAAAATAATCCTTTAAT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCATTGCCTTTGCAGCGTCTTTCCGATCATTCA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GAACGTGAGATACGCCTCCCAGCGGCGCTCGGT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCCGTCAAACAGTATCACCGCGTTAACGCCCGC
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCCACACACGTCGAGCTGGTGGGGGTTAATGCT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GACACCTCTACTGACGTTCCTGAACAAGAAGAT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GAAACCGGACGAGGGCGCGCTAAAACGTGATTA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCCTCTCAATTTGTAACGTCTGCAATGTCAGGC
GAGTTCCCCGTGCCAGCGGGGATAAACC

>NZ_CP016828|1|1|1118184-1119005|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCA	GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAGGGCCGCATTGACGGCCCTGTGTTATCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGCTGTTAGCCAAACATGTCGACCTGTTTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGGCGGTGGTGCTGTAATTCACACCGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TATTCCCCCAGTCACCCCCGCCACCAAAATCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTCAGACTCATCAAAATAATCCTTTAAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGCCTTTGCAGCGTCTTTCCGATCATTCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AACGTGAGATACGCCTCCCAGCGGCGCTCGGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTCAAACAGTATCACCGCGTTAACGCCCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCACACACGTCGAGCTGGTGGGGGTTAATGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACACCTCTACTGACGTTCCTGAACAAGAAGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAACCGGACGAGGGCGCGCTAAAACGTGATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCTCAATTTGTAACGTCTGCAATGTCAGGC
GAGTTCCCCGTGCCAGCGGGGATAAACCA

>NZ_CP016828|1|1|1118184-1119005|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCA	GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAGGGCCGCATTGACGGCCCTGTGTTATCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGCTGTTAGCCAAACATGTCGACCTGTTTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGGCGGTGGTGCTGTAATTCACACCGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TATTCCCCCAGTCACCCCCGCCACCAAAATCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTCAGACTCATCAAAATAATCCTTTAAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGCCTTTGCAGCGTCTTTCCGATCATTCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AACGTGAGATACGCCTCCCAGCGGCGCTCGGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTCAAACAGTATCACCGCGTTAACGCCCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCACACACGTCGAGCTGGTGGGGGTTAATGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACACCTCTACTGACGTTCCTGAACAAGAAGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAACCGGACGAGGGCGCGCTAAAACGTGATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCTCAATTTGTAACGTCTGCAATGTCAGGC
GAGTTCCCCGTGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016828.1\|WP_000039681.1\|1119643_1121122_-\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP016828.1\|WP_001299097.1\|1127238_1128099_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP016828.1\|WP_000581937.1\|1111251_1111500_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP016828.1\|WP_000059312.1\|1123599_1125054_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP016828.1\|WP_001299652.1\|1126462_1127242_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP016828.1\|WP_000036723.1\|1114649_1115948_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP016828.1\|WP_000226815.1\|1108939_1111174_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP016828.1\|WP_000186450.1\|1104777_1107534_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP016828.1\|WP_000046785.1\|1107590_1108892_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP016828.1\|WP_001199973.1\|1117172_1117844_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP016828.1\|WP_024199804.1\|1125147_1126485_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP016828.1\|WP_001387010.1\|1129089_1130361_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP016828.1\|WP_000109532.1\|1128838_1129099_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP016828.1\|WP_000210878.1\|1112924_1114562_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP016828.1\|WP_001164557.1\|1121148_1122426_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP016828.1\|WP_001071648.1\|1111905_1112697_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP016828.1\|WP_001130266.1\|1128246_1128822_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP016828.1\|WP_000254745.1\|1111499_1111835_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP016828.1\|WP_000021321.1\|1122744_1123530_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP016828.1\|WP_001288227.1\|1116893_1117034_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016828.1\|WP_000039681.1\|1119643_1121122_-\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	5.94468e-108
NZ_CP016828.1\|WP_001299097.1\|1127238_1128099_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
NZ_CP016828.1\|WP_000581937.1\|1111251_1111500_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP016828.1\|WP_000059312.1\|1123599_1125054_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
NZ_CP016828.1\|WP_001299652.1\|1126462_1127242_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
NZ_CP016828.1\|WP_000036723.1\|1114649_1115948_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP016828.1\|WP_000226815.1\|1108939_1111174_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP016828.1\|WP_000186450.1\|1104777_1107534_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP016828.1\|WP_000046785.1\|1107590_1108892_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP016828.1\|WP_001199973.1\|1117172_1117844_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP016828.1\|WP_024199804.1\|1125147_1126485_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.19449e-50
NZ_CP016828.1\|WP_001387010.1\|1129089_1130361_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	7.53866e-125
NZ_CP016828.1\|WP_000109532.1\|1128838_1129099_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.6328e-41
NZ_CP016828.1\|WP_000210878.1\|1112924_1114562_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP016828.1\|WP_001164557.1\|1121148_1122426_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	4.01972e-29
NZ_CP016828.1\|WP_001071648.1\|1111905_1112697_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP016828.1\|WP_001130266.1\|1128246_1128822_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP016828.1\|WP_000254745.1\|1111499_1111835_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP016828.1\|WP_000021321.1\|1122744_1123530_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.84461e-140

>NZ_CP016828.1|WP_001199973.1|1117172_1117844_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP016828.1|WP_001288227.1|1116893_1117034_-|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP016828.1|WP_000036723.1|1114649_1115948_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP016828.1|WP_000210878.1|1112924_1114562_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP016828.1|WP_001071648.1|1111905_1112697_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP016828.1|WP_000254745.1|1111499_1111835_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP016828.1|WP_000581937.1|1111251_1111500_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP016828.1|WP_000226815.1|1108939_1111174_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP016828.1|WP_000046785.1|1107590_1108892_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPKLEALLPKVRACLGSLQVMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP016828.1|WP_000186450.1|1104777_1107534_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP016828.1|WP_000039681.1|1119643_1121122_-|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTLAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWTWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP016828.1|WP_001164557.1|1121148_1122426_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQFSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP016828.1|WP_000021321.1|1122744_1123530_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP016828.1|WP_000059312.1|1123599_1125054_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP016828.1|WP_024199804.1|1125147_1126485_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTVFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP016828.1|WP_001299652.1|1126462_1127242_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP016828.1|WP_001299097.1|1127238_1128099_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP016828.1|WP_001130266.1|1128246_1128822_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP016828.1|WP_000109532.1|1128838_1129099_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP016828.1|WP_001387010.1|1129089_1130361_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARSGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP016828_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016828_2

1144705-1144794

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

1 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP016828_2

>merge|NZ_CP016828|2|1144705-1144794|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCAAAGAAGAACAACGAGCCAACTGGTTTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP016828|2|2|1144705-1144794|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAAAGAAGAACAACGAGCCAACTGGTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016828.1\|WP_000206435.1\|1140953_1142009_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP016828.1\|WP_000029329.1\|1140405_1140942_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP016828.1\|WP_000063179.1\|1144314_1144608_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP016828.1\|WP_001173673.1\|1148501_1149107_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP016828.1\|WP_000246138.1\|1150003_1150714_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP016828.1\|WP_000085069.1\|1142019_1142766_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP016828.1\|WP_001084093.1\|1138846_1140409_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP016828.1\|WP_001219242.1\|1150713_1151193_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP016828.1\|WP_000281434.1\|1142747_1143398_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP016828.1\|WP_000039843.1\|1134704_1135439_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP016828.1\|WP_000568956.1\|1151189_1152239_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP016828.1\|WP_000517476.1\|1149673_1149985_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP016828.1\|WP_001295182.1\|1152219_1152981_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP016828.1\|WP_000372108.1\|1146164_1147073_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP016828.1\|WP_001090348.1\|1147074_1148502_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP016828.1\|WP_000490426.1\|1144875_1145913_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP016828.1\|WP_000144875.1\|1143394_1144315_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP016828.1\|WP_001246104.1\|1149156_1149480_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP016828.1\|WP_001233957.1\|1136049_1138749_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP016828.1\|WP_000956458.1\|1135703_1135856_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840

Protein	Function_ID	Function_description	E-value
NZ_CP016828.1\|WP_000206435.1\|1140953_1142009_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.81938e-155
NZ_CP016828.1\|WP_000029329.1\|1140405_1140942_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
NZ_CP016828.1\|WP_000063179.1\|1144314_1144608_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.5781e-65
NZ_CP016828.1\|WP_001173673.1\|1148501_1149107_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP016828.1\|WP_000246138.1\|1150003_1150714_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP016828.1\|WP_000085069.1\|1142019_1142766_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.67461e-49
NZ_CP016828.1\|WP_001084093.1\|1138846_1140409_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP016828.1\|WP_001219242.1\|1150713_1151193_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP016828.1\|WP_000281434.1\|1142747_1143398_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	5.16907e-91
NZ_CP016828.1\|WP_000039843.1\|1134704_1135439_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP016828.1\|WP_000568956.1\|1151189_1152239_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP016828.1\|WP_000517476.1\|1149673_1149985_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP016828.1\|WP_001295182.1\|1152219_1152981_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP016828.1\|WP_000372108.1\|1146164_1147073_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP016828.1\|WP_001090348.1\|1147074_1148502_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP016828.1\|WP_000490426.1\|1144875_1145913_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP016828.1\|WP_000144875.1\|1143394_1144315_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.70125e-157
NZ_CP016828.1\|WP_001246104.1\|1149156_1149480_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP016828.1\|WP_001233957.1\|1136049_1138749_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.04462e-175
NZ_CP016828.1\|WP_000956458.1\|1135703_1135856_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12

>NZ_CP016828.1|WP_000063179.1|1144314_1144608_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGKNRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP016828.1|WP_000144875.1|1143394_1144315_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>NZ_CP016828.1|WP_000281434.1|1142747_1143398_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQARPAESETFTIECRPFVSELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVKGQAEGRDIWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENTRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP016828.1|WP_000085069.1|1142019_1142766_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHEGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP016828.1|WP_000206435.1|1140953_1142009_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWSAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRTPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQSSEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP016828.1|WP_000029329.1|1140405_1140942_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP016828.1|WP_001084093.1|1138846_1140409_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWEDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP016828.1|WP_001233957.1|1136049_1138749_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQESARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLAIKALFPRIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAQAMDIKHYWQKALVQAQNALTVFPPKAETAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLIAAGKAHGLFFGLPTMATANAMYDRLVKTWLSFYSPESRPSLVLAHSARTLMDRFNESLWSGDLIGSEEPDEQAFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQEAPLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRARAKKYVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCVEQRQDPEMANVILVTDDESCGYSAREGLIGKVG
>NZ_CP016828.1|WP_000956458.1|1135703_1135856_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP016828.1|WP_000039843.1|1134704_1135439_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>NZ_CP016828.1|WP_000490426.1|1144875_1145913_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP016828.1|WP_000372108.1|1146164_1147073_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP016828.1|WP_001090348.1|1147074_1148502_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP016828.1|WP_001173673.1|1148501_1149107_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP016828.1|WP_001246104.1|1149156_1149480_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP016828.1|WP_000517476.1|1149673_1149985_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP016828.1|WP_000246138.1|1150003_1150714_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP016828.1|WP_001219242.1|1150713_1151193_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP016828.1|WP_000568956.1|1151189_1152239_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPELSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP016828.1|WP_001295182.1|1152219_1152981_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP016828_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016828_3

2372208-2372331

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016828_3

>merge|NZ_CP016828|3|2372208-2372331|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP016828|3|3|2372208-2372331|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016828.1\|WP_001349911.1\|2367759_2368428_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP016828.1\|WP_000007283.1\|2382797_2383379_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP016828.1\|WP_000587560.1\|2369213_2370026_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP016828.1\|WP_001174942.1\|2373942_2375316_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP016828.1\|WP_000102278.1\|2381227_2381317_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP016828.1\|WP_000269501.1\|2378974_2379907_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP016828.1\|WP_001295403.1\|2361661_2363074_-\|pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
NZ_CP016828.1\|WP_000701040.1\|2381482_2382652_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP016828.1\|WP_000190982.1\|2379903_2380929_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP016828.1\|WP_000528342.1\|2363630_2363840_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP016828.1\|WP_000534291.1\|2372645_2373902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP016828.1\|WP_000716922.1\|2370037_2371642_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP016828.1\|WP_001182363.1\|2377650_2378862_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP016828.1\|WP_000493947.1\|2375530_2376172_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP016828.1\|WP_001069992.1\|2368424_2369210_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP016828.1\|WP_000504358.1\|2367048_2367696_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP016828.1\|WP_001070230.1\|2364295_2364922_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP016828.1\|WP_000212657.1\|2371767_2372073_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP016828.1\|WP_001273518.1\|2364942_2367045_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP016828.1\|WP_000098911.1\|2376211_2377360_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282

Protein	Function_ID	Function_description	E-value
NZ_CP016828.1\|WP_001349911.1\|2367759_2368428_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.32003e-76
NZ_CP016828.1\|WP_000007283.1\|2382797_2383379_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP016828.1\|WP_000587560.1\|2369213_2370026_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	8.20825e-175
NZ_CP016828.1\|WP_001174942.1\|2373942_2375316_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP016828.1\|WP_000269501.1\|2378974_2379907_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP016828.1\|WP_001295403.1\|2361661_2363074_-\|pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP016828.1\|WP_000701040.1\|2381482_2382652_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP016828.1\|WP_000190982.1\|2379903_2380929_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP016828.1\|WP_000528342.1\|2363630_2363840_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP016828.1\|WP_000534291.1\|2372645_2373902_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP016828.1\|WP_000716922.1\|2370037_2371642_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP016828.1\|WP_001182363.1\|2377650_2378862_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP016828.1\|WP_000493947.1\|2375530_2376172_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP016828.1\|WP_001069992.1\|2368424_2369210_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	1.73962e-162
NZ_CP016828.1\|WP_000504358.1\|2367048_2367696_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	2.09841e-122
NZ_CP016828.1\|WP_001070230.1\|2364295_2364922_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP016828.1\|WP_000212657.1\|2371767_2372073_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
NZ_CP016828.1\|WP_001273518.1\|2364942_2367045_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP016828.1\|WP_000098911.1\|2376211_2377360_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0

>NZ_CP016828.1|WP_000212657.1|2371767_2372073_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP016828.1|WP_000716922.1|2370037_2371642_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP016828.1|WP_000587560.1|2369213_2370026_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC
>NZ_CP016828.1|WP_001069992.1|2368424_2369210_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSVTDYGEKIYLYCKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP016828.1|WP_001349911.1|2367759_2368428_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP016828.1|WP_000504358.1|2367048_2367696_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSVAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP016828.1|WP_001273518.1|2364942_2367045_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>NZ_CP016828.1|WP_001070230.1|2364295_2364922_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP016828.1|WP_000528342.1|2363630_2363840_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP016828.1|WP_001295403.1|2361661_2363074_-|pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP016828.1|WP_000534291.1|2372645_2373902_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP016828.1|WP_001174942.1|2373942_2375316_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>NZ_CP016828.1|WP_000493947.1|2375530_2376172_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP016828.1|WP_000098911.1|2376211_2377360_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP016828.1|WP_001182363.1|2377650_2378862_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP016828.1|WP_000269501.1|2378974_2379907_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP016828.1|WP_000190982.1|2379903_2380929_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP016828.1|WP_000102278.1|2381227_2381317_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP016828.1|WP_000701040.1|2381482_2382652_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP016828.1|WP_000007283.1|2382797_2383379_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP016828_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016828_4

3216038-3216129

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016828_4

>merge|NZ_CP016828|4|3216038-3216129|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP016828|4|4|3216038-3216129|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016828.1\|WP_000024560.1\|3221404_3221710_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP016828.1\|WP_001299828.1\|3205552_3209515_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP016828.1\|WP_001230242.1\|3224944_3226117_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP016828.1\|WP_001307099.1\|3212669_3213470_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP016828.1\|WP_001044266.1\|3217434_3218676_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP016828.1\|WP_001151437.1\|3216552_3217149_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP016828.1\|WP_000209869.1\|3221802_3222402_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP016828.1\|WP_000420631.1\|3220484_3221405_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP016828.1\|WP_000979516.1\|3205288_3205498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016828.1\|WP_001143120.1\|3217169_3217397_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP016828.1\|WP_001062101.1\|3222398_3224945_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP016828.1\|WP_001326838.1\|3214595_3215924_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP016828.1\|WP_001120112.1\|3226246_3226939_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP016828.1\|WP_001297176.1\|3210480_3211572_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP016828.1\|WP_001028096.1\|3214080_3214575_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP016828.1\|WP_000191700.1\|3209554_3210193_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP016828.1\|WP_001365671.1\|3218964_3220152_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP016828.1\|WP_001001196.1\|3213479_3214070_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP016828.1\|WP_001126777.1\|3212275_3212662_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP016828.1\|WP_001307708.1\|3211571_3212264_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356

Protein	Function_ID	Function_description	E-value
NZ_CP016828.1\|WP_000024560.1\|3221404_3221710_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP016828.1\|WP_001299828.1\|3205552_3209515_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP016828.1\|WP_001230242.1\|3224944_3226117_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP016828.1\|WP_001307099.1\|3212669_3213470_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.96403e-140
NZ_CP016828.1\|WP_001044266.1\|3217434_3218676_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP016828.1\|WP_001151437.1\|3216552_3217149_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP016828.1\|WP_000209869.1\|3221802_3222402_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	5.28244e-84
NZ_CP016828.1\|WP_000420631.1\|3220484_3221405_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP016828.1\|WP_001062101.1\|3222398_3224945_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP016828.1\|WP_001143120.1\|3217169_3217397_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP016828.1\|WP_001326838.1\|3214595_3215924_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP016828.1\|WP_001120112.1\|3226246_3226939_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP016828.1\|WP_001297176.1\|3210480_3211572_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP016828.1\|WP_001028096.1\|3214080_3214575_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.28716e-106
NZ_CP016828.1\|WP_000191700.1\|3209554_3210193_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.12845e-153
NZ_CP016828.1\|WP_001365671.1\|3218964_3220152_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP016828.1\|WP_001001196.1\|3213479_3214070_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.45614e-128
NZ_CP016828.1\|WP_001126777.1\|3212275_3212662_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	6.69692e-84
NZ_CP016828.1\|WP_001307708.1\|3211571_3212264_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	5.84226e-169

>NZ_CP016828.1|WP_001326838.1|3214595_3215924_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP
>NZ_CP016828.1|WP_001028096.1|3214080_3214575_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC
>NZ_CP016828.1|WP_001001196.1|3213479_3214070_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTVEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP016828.1|WP_001307099.1|3212669_3213470_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP016828.1|WP_001126777.1|3212275_3212662_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLEIIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP016828.1|WP_001307708.1|3211571_3212264_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP016828.1|WP_001297176.1|3210480_3211572_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP016828.1|WP_000191700.1|3209554_3210193_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEIFFNQTVENVQRIIIEGIRPR
>NZ_CP016828.1|WP_001299828.1|3205552_3209515_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPVERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP016828.1|WP_000979516.1|3205288_3205498_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP016828.1|WP_001151437.1|3216552_3217149_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP016828.1|WP_001143120.1|3217169_3217397_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP016828.1|WP_001044266.1|3217434_3218676_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLIASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP016828.1|WP_001365671.1|3218964_3220152_-|YccE-family-protein
MSTKKNQKYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECDSLEKEFEEMQNDNDLSLFLRTLRTNDTETYSGVSEGITYTIQYVRDIDIVRVSLPGRGSESITDFKGYYWYGFMEYIENINACDDVFSEYCLDDENMSIQPEWINTPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKEHEYSWALGSHKTQKQVYEEFIKIVDKQTIEALVDTAFNDLREDVKTLFGVNLQSDNKIQGQGGFLSWSFLSFKKEFIDSCLNDKKCILHLPEFIFNDNKVRLVLDTDPEQRVNEVKNFLTALSDSICSLFIVNSNMASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKERNAQLDYLNRYAIY
>NZ_CP016828.1|WP_000420631.1|3220484_3221405_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHSDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP016828.1|WP_000024560.1|3221404_3221710_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP016828.1|WP_000209869.1|3221802_3222402_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVVRCRQYDSFGFYAALSQLLLVLVESDHQNR
>NZ_CP016828.1|WP_001062101.1|3222398_3224945_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGAVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP016828.1|WP_001230242.1|3224944_3226117_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP016828.1|WP_001120112.1|3226246_3226939_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NZ_CP016828_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016828_5

3621032-3621176

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016828_5

>merge|NZ_CP016828|5|3621032-3621176|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>NZ_CP016828|5|5|3621032-3621176|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016828.1\|WP_000604032.1\|3630412_3631102_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_CP016828.1\|WP_001295302.1\|3610316_3611225_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NZ_CP016828.1\|WP_000118840.1\|3615428_3616583_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP016828.1\|WP_000246805.1\|3614686_3615442_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP016828.1\|WP_000723652.1\|3625152_3626205_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_CP016828.1\|WP_000042533.1\|3611416_3613438_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP016828.1\|WP_000951213.1\|3616579_3617620_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP016828.1\|WP_000593936.1\|3621199_3623461_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
NZ_CP016828.1\|WP_000767389.1\|3619054_3619531_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP016828.1\|WP_000679972.1\|3626388_3627342_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP016828.1\|WP_000101987.1\|3631101_3631875_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_CP016828.1\|WP_000891515.1\|3632041_3632191_-\|multidrug-efflux-pump-associated-protein,-AcrZ-family	unknown	unknown	gnl\|CDD\|371231
NZ_CP016828.1\|WP_000213425.1\|3628532_3629351_+\|pyridoxal-phosphatase	unknown	unknown	gnl\|CDD\|182523
NZ_CP016828.1\|WP_001307065.1\|3617706_3618996_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP016828.1\|WP_000815435.1\|3627382_3628378_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
NZ_CP016828.1\|WP_001036475.1\|3623643_3625077_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP016828.1\|WP_000891676.1\|3629351_3630410_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_CP016828.1\|WP_001091569.1\|3619682_3620966_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP016828.1\|WP_001295301.1\|3608930_3609920_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP016828.1\|WP_000044868.1\|3614016_3614694_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625

Protein	Function_ID	Function_description	E-value
NZ_CP016828.1\|WP_000604032.1\|3630412_3631102_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	9.04539e-146
NZ_CP016828.1\|WP_001295302.1\|3610316_3611225_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
NZ_CP016828.1\|WP_000118840.1\|3615428_3616583_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP016828.1\|WP_000246805.1\|3614686_3615442_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.57982e-172
NZ_CP016828.1\|WP_000723652.1\|3625152_3626205_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_CP016828.1\|WP_000042533.1\|3611416_3613438_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP016828.1\|WP_000951213.1\|3616579_3617620_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP016828.1\|WP_000593936.1\|3621199_3623461_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
NZ_CP016828.1\|WP_000767389.1\|3619054_3619531_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.08182e-118
NZ_CP016828.1\|WP_000679972.1\|3626388_3627342_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
NZ_CP016828.1\|WP_000101987.1\|3631101_3631875_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
NZ_CP016828.1\|WP_000891515.1\|3632041_3632191_-\|multidrug-efflux-pump-associated-protein,-AcrZ-family	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
NZ_CP016828.1\|WP_000213425.1\|3628532_3629351_+\|pyridoxal-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
NZ_CP016828.1\|WP_001307065.1\|3617706_3618996_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP016828.1\|WP_000815435.1\|3627382_3628378_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
NZ_CP016828.1\|WP_001036475.1\|3623643_3625077_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
NZ_CP016828.1\|WP_000891676.1\|3629351_3630410_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_CP016828.1\|WP_001091569.1\|3619682_3620966_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP016828.1\|WP_001295301.1\|3608930_3609920_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NZ_CP016828.1\|WP_000044868.1\|3614016_3614694_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	7.09172e-110

>NZ_CP016828.1|WP_001091569.1|3619682_3620966_+|putative-acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>NZ_CP016828.1|WP_000767389.1|3619054_3619531_+|kinase-inhibitor
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>NZ_CP016828.1|WP_001307065.1|3617706_3618996_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>NZ_CP016828.1|WP_000951213.1|3616579_3617620_-|biotin-synthase-BioB
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>NZ_CP016828.1|WP_000118840.1|3615428_3616583_-|8-amino-7-oxononanoate-synthase
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFVHNDVTHLARLLASPCPGQQLVVTEGVFSMDGDIAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>NZ_CP016828.1|WP_000246805.1|3614686_3615442_-|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAIAAAFGRAAALYEQHADLQRQSADVLLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>NZ_CP016828.1|WP_000044868.1|3614016_3614694_-|ATP-dependent-dethiobiotin-synthetase-BioD
MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGSEKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>NZ_CP016828.1|WP_000042533.1|3611416_3613438_-|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP016828.1|WP_001295302.1|3610316_3611225_+|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>NZ_CP016828.1|WP_001295301.1|3608930_3609920_-|GTP-3',8-cyclase-MoaA
MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVKVNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLFGEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG
>NZ_CP016828.1|WP_000593936.1|3621199_3623461_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>NZ_CP016828.1|WP_001036475.1|3623643_3625077_-|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>NZ_CP016828.1|WP_000723652.1|3625152_3626205_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>NZ_CP016828.1|WP_000679972.1|3626388_3627342_+|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>NZ_CP016828.1|WP_000815435.1|3627382_3628378_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>NZ_CP016828.1|WP_000213425.1|3628532_3629351_+|pyridoxal-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>NZ_CP016828.1|WP_000891676.1|3629351_3630410_-|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMAKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQCLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELVIKPGLWLYAQIKSVSITA
>NZ_CP016828.1|WP_000604032.1|3630412_3631102_-|molybdate-ABC-transporter-permease-subunit
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITIPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>NZ_CP016828.1|WP_000101987.1|3631101_3631875_-|molybdate-ABC-transporter-substrate-binding-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVAPKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK
>NZ_CP016828.1|WP_000891515.1|3632041_3632191_-|multidrug-efflux-pump-associated-protein,-AcrZ-family
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH

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Crispr_ID: NZ_CP016828_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016828_6

3861001-3861097

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016828_6

>merge|NZ_CP016828|6|3861001-3861097|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>NZ_CP016828|6|6|3861001-3861097|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016828.1\|WP_000190288.1\|3855589_3855802_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP016828.1\|WP_001306952.1\|3862020_3862836_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP016828.1\|WP_000706355.1\|3869330_3870476_-\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP016828.1\|WP_000006887.1\|3871855_3873217_-\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP016828.1\|WP_000729154.1\|3854721_3855588_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP016828.1\|WP_000255997.1\|3858025_3858520_+\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP016828.1\|WP_000912345.1\|3856466_3857852_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP016828.1\|WP_000703879.1\|3866099_3867149_+\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP016828.1\|WP_001298987.1\|3870497_3871799_-\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP016828.1\|WP_000212252.1\|3858522_3859245_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP016828.1\|WP_001143543.1\|3855909_3856431_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP016828.1\|WP_001306951.1\|3867170_3868406_+\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP016828.1\|WP_000776555.1\|3853698_3854241_-\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP016828.1\|WP_001295318.1\|3859362_3859872_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP016828.1\|WP_000540946.1\|3868416_3869202_+\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|225796
NZ_CP016828.1\|WP_000580806.1\|3864115_3865783_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP016828.1\|WP_000815551.1\|3859868_3860936_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP016828.1\|WP_000988366.1\|3852786_3853479_-\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP016828.1\|WP_000855388.1\|3861130_3862024_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP016828.1\|WP_000495400.1\|3862846_3864106_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673

Protein	Function_ID	Function_description	E-value
NZ_CP016828.1\|WP_000190288.1\|3855589_3855802_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP016828.1\|WP_001306952.1\|3862020_3862836_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.28312e-37
NZ_CP016828.1\|WP_000706355.1\|3869330_3870476_-\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP016828.1\|WP_000006887.1\|3871855_3873217_-\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP016828.1\|WP_000729154.1\|3854721_3855588_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP016828.1\|WP_000255997.1\|3858025_3858520_+\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NZ_CP016828.1\|WP_000912345.1\|3856466_3857852_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP016828.1\|WP_000703879.1\|3866099_3867149_+\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP016828.1\|WP_001298987.1\|3870497_3871799_-\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP016828.1\|WP_000212252.1\|3858522_3859245_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.37025e-165
NZ_CP016828.1\|WP_001143543.1\|3855909_3856431_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	7.12373e-31
NZ_CP016828.1\|WP_001306951.1\|3867170_3868406_+\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP016828.1\|WP_000776555.1\|3853698_3854241_-\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
NZ_CP016828.1\|WP_001295318.1\|3859362_3859872_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP016828.1\|WP_000540946.1\|3868416_3869202_+\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|225796	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only].	4.36926e-152
NZ_CP016828.1\|WP_000580806.1\|3864115_3865783_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP016828.1\|WP_000815551.1\|3859868_3860936_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.30115e-179
NZ_CP016828.1\|WP_000988366.1\|3852786_3853479_-\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	5.84958e-149
NZ_CP016828.1\|WP_000855388.1\|3861130_3862024_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP016828.1\|WP_000495400.1\|3862846_3864106_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.67788e-130

>NZ_CP016828.1|WP_000815551.1|3859868_3860936_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFERLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNSPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP016828.1|WP_001295318.1|3859362_3859872_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP016828.1|WP_000212252.1|3858522_3859245_+|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP016828.1|WP_000255997.1|3858025_3858520_+|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP016828.1|WP_000912345.1|3856466_3857852_-|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP016828.1|WP_001143543.1|3855909_3856431_+|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLICCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMVLMGMLWWRRR
>NZ_CP016828.1|WP_000190288.1|3855589_3855802_+|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP016828.1|WP_000729154.1|3854721_3855588_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP016828.1|WP_000776555.1|3853698_3854241_-|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP016828.1|WP_000988366.1|3852786_3853479_-|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>NZ_CP016828.1|WP_000855388.1|3861130_3862024_-|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP016828.1|WP_001306952.1|3862020_3862836_-|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWMLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP016828.1|WP_000495400.1|3862846_3864106_-|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNPGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMEHGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP016828.1|WP_000580806.1|3864115_3865783_-|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTDFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSLALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIRPLSPATQQHTPSLMENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP016828.1|WP_000703879.1|3866099_3867149_+|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAEQNGVAVVGISRMGHSGAISYFVQQAARAGLIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPLAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP016828.1|WP_001306951.1|3867170_3868406_+|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVILSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCESEKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP016828.1|WP_000540946.1|3868416_3869202_+|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYRDDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP016828.1|WP_000706355.1|3869330_3870476_-|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQVLVANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP016828.1|WP_001298987.1|3870497_3871799_-|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLGMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP016828.1|WP_000006887.1|3871855_3873217_-|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ

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Crispr_ID: NZ_CP016828_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016828_7

4388118-4388250

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP016828_7

>merge|NZ_CP016828|7|4388118-4388250|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACATGGCGTAGAAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>NZ_CP016828|7|2|4388118-4388250|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTC
CTCACCAATATTGAAAA	CATGGCGTAGAAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016828.1\|WP_000787103.1\|4388500_4390015_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP016828.1\|WP_000597260.1\|4399631_4400780_-\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP016828.1\|WP_000349932.1\|4391316_4392534_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP016828.1\|WP_000333120.1\|4395736_4396132_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP016828.1\|WP_000004397.1\|4394269_4395055_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP016828.1\|WP_001091525.1\|4386300_4387242_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP016828.1\|WP_000543605.1\|4401235_4402057_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP016828.1\|WP_001386575.1\|4392607_4394161_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP016828.1\|WP_000257192.1\|4379205_4380048_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP016828.1\|WP_000122876.1\|4395060_4395651_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP016828.1\|WP_000610901.1\|4378821_4379199_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP016828.1\|WP_001287737.1\|4384963_4386250_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP016828.1\|WP_000377194.1\|4380796_4382659_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP016828.1\|WP_001126376.1\|4396392_4399614_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP016828.1\|WP_000624375.1\|4380125_4380605_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP016828.1\|WP_000203741.1\|4384679_4384967_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP016828.1\|WP_000692206.1\|4387256_4388027_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP016828.1\|WP_000600725.1\|4382651_4383182_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP016828.1\|WP_000347117.1\|4390045_4391188_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP016828.1\|WP_001183198.1\|4383289_4384621_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874

Protein	Function_ID	Function_description	E-value
NZ_CP016828.1\|WP_000787103.1\|4388500_4390015_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP016828.1\|WP_000597260.1\|4399631_4400780_-\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP016828.1\|WP_000349932.1\|4391316_4392534_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP016828.1\|WP_000333120.1\|4395736_4396132_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.96175e-74
NZ_CP016828.1\|WP_000004397.1\|4394269_4395055_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	4.82171e-178
NZ_CP016828.1\|WP_001091525.1\|4386300_4387242_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP016828.1\|WP_000543605.1\|4401235_4402057_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.09638e-141
NZ_CP016828.1\|WP_001386575.1\|4392607_4394161_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP016828.1\|WP_000257192.1\|4379205_4380048_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP016828.1\|WP_000122876.1\|4395060_4395651_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	2.12106e-142
NZ_CP016828.1\|WP_000610901.1\|4378821_4379199_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP016828.1\|WP_001287737.1\|4384963_4386250_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP016828.1\|WP_000377194.1\|4380796_4382659_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP016828.1\|WP_001126376.1\|4396392_4399614_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP016828.1\|WP_000624375.1\|4380125_4380605_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP016828.1\|WP_000203741.1\|4384679_4384967_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
NZ_CP016828.1\|WP_000692206.1\|4387256_4388027_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	2.43681e-170
NZ_CP016828.1\|WP_000600725.1\|4382651_4383182_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP016828.1\|WP_000347117.1\|4390045_4391188_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP016828.1\|WP_001183198.1\|4383289_4384621_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59

>NZ_CP016828.1|WP_000692206.1|4387256_4388027_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAVDAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP016828.1|WP_001091525.1|4386300_4387242_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGVQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTISVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP016828.1|WP_001287737.1|4384963_4386250_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSLSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP016828.1|WP_000203741.1|4384679_4384967_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP016828.1|WP_001183198.1|4383289_4384621_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP016828.1|WP_000600725.1|4382651_4383182_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP016828.1|WP_000377194.1|4380796_4382659_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLVQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP016828.1|WP_000624375.1|4380125_4380605_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP016828.1|WP_000257192.1|4379205_4380048_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>NZ_CP016828.1|WP_000610901.1|4378821_4379199_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP016828.1|WP_000787103.1|4388500_4390015_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP016828.1|WP_000347117.1|4390045_4391188_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP016828.1|WP_000349932.1|4391316_4392534_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP016828.1|WP_001386575.1|4392607_4394161_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPSDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP016828.1|WP_000004397.1|4394269_4395055_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIFRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP016828.1|WP_000122876.1|4395060_4395651_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP016828.1|WP_000333120.1|4395736_4396132_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVAEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP016828.1|WP_001126376.1|4396392_4399614_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP016828.1|WP_000597260.1|4399631_4400780_-|carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NZ_CP016828.1|WP_000543605.1|4401235_4402057_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNSL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016828_4	4.1\|3216064\|40\|NZ_CP016828\|CRISPRCasFinder	3216064-3216103	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP016828_7	7.1\|4388135\|42\|NZ_CP016828\|PILER-CR	4388135-4388176	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	0	1.0
NZ_CP016828_7	7.2\|4388194\|40\|NZ_CP016828\|PILER-CR	4388194-4388233	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	0	1.0
NZ_CP016828_3	3.1\|2372251\|38\|NZ_CP016828\|CRISPRCasFinder	2372251-2372288	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP038598	Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.3, complete sequence	2051-2083	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP033827	Klebsiella sp. FDAARGOS_511 plasmid unnamed4, complete sequence	692-724	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP029125	Enterobacter hormaechei strain AR432 plasmid unnamed2, complete sequence	518-550	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_AP019693	Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 plasmid pSL180013-1, complete sequence	2811-2843	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP030192	Salmonella enterica strain SA20104250 plasmid pSA20104250.2, complete sequence	1835-1867	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP039274	Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.4, complete sequence	118-150	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP016528	Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_4, complete sequence	52-84	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP030227	Salmonella enterica strain SA20041605 plasmid pSA20041605.2, complete sequence	3123-3155	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NC_013090	Endophytic bacterium LOB-07 plasmid pLK39, complete sequence	52-84	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP030009	Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204002, complete sequence	2572-2604	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP011606	Citrobacter freundii strain CAV1321 plasmid pCAV1321-4310, complete sequence	3835-3867	7	0.788
NZ_CP016828_1	1.2\|1118273\|33\|NZ_CP016828\|PILER-CR	1118273-1118305	33	NZ_CP044113	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed4, complete sequence	3638-3670	7	0.788
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP038598	Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.3, complete sequence	2052-2083	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP033827	Klebsiella sp. FDAARGOS_511 plasmid unnamed4, complete sequence	693-724	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP029125	Enterobacter hormaechei strain AR432 plasmid unnamed2, complete sequence	518-549	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_AP019693	Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 plasmid pSL180013-1, complete sequence	2812-2843	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP030192	Salmonella enterica strain SA20104250 plasmid pSA20104250.2, complete sequence	1835-1866	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP039274	Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.4, complete sequence	118-149	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP016528	Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_4, complete sequence	53-84	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP030227	Salmonella enterica strain SA20041605 plasmid pSA20041605.2, complete sequence	3124-3155	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NC_013090	Endophytic bacterium LOB-07 plasmid pLK39, complete sequence	53-84	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP030009	Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204002, complete sequence	2572-2603	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP011606	Citrobacter freundii strain CAV1321 plasmid pCAV1321-4310, complete sequence	3835-3866	7	0.781
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NZ_CP044113	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed4, complete sequence	3639-3670	7	0.781
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	MN693005	Marine virus AFVG_117M50, complete genome	6262-6293	7	0.781
NZ_CP016828_1	1.1\|1118212\|33\|NZ_CP016828\|PILER-CR	1118212-1118244	33	NZ_CP012265	Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence	26062-26094	8	0.758
NZ_CP016828_1	1.6\|1118517\|33\|NZ_CP016828\|PILER-CR	1118517-1118549	33	MN693005	Marine virus AFVG_117M50, complete genome	6262-6294	8	0.758
NZ_CP016828_1	1.11\|1118822\|33\|NZ_CP016828\|PILER-CR	1118822-1118854	33	MK016501	Mycobacterium phage Nebkiss, complete genome	21453-21485	8	0.758
NZ_CP016828_1	1.11\|1118822\|33\|NZ_CP016828\|PILER-CR	1118822-1118854	33	NC_026590	Mycobacterium phage Gaia, complete genome	21452-21484	8	0.758
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP012265	Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence	26063-26094	8	0.75
NZ_CP016828_1	1.15\|1118274\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118274-1118305	32	NC_019341	Pseudomonas syringae plasmid pNCPPB880-40, complete sequence	6612-6643	8	0.75
NZ_CP016828_1	1.17\|1118396\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118396-1118427	32	AB452989	Serratia phage KSP20 orf7 to orf11 genes for scaffolding protein, major capsid protein, terminase, head completion protein, hypothetical protein, complete and partial cds	1966-1997	8	0.75
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	MK295204	Shigella phage vB_SdyM_006, complete genome	16122-16153	8	0.75
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	MG696114	Proteus phage phiP4-3, complete genome	149804-149835	8	0.75
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	NZ_CP017949	Tenericutes bacterium MO-XQ plasmid unnamed, complete sequence	58006-58037	8	0.75
NZ_CP016828_1	1.22\|1118701\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118701-1118732	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	121002-121033	8	0.75
NZ_CP016828_1	1.24\|1118823\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118823-1118854	32	MK016501	Mycobacterium phage Nebkiss, complete genome	21454-21485	8	0.75
NZ_CP016828_1	1.24\|1118823\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118823-1118854	32	NC_026590	Mycobacterium phage Gaia, complete genome	21453-21484	8	0.75
NZ_CP016828_1	1.6\|1118517\|33\|NZ_CP016828\|PILER-CR	1118517-1118549	33	MK295204	Shigella phage vB_SdyM_006, complete genome	16121-16153	9	0.727
NZ_CP016828_1	1.6\|1118517\|33\|NZ_CP016828\|PILER-CR	1118517-1118549	33	MG696114	Proteus phage phiP4-3, complete genome	149804-149836	9	0.727
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	460266-460297	9	0.719
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	AP022649	Bacillus wiedmannii PL1 plasmid pBwiPL1-6 DNA, complete sequence	5394-5425	9	0.719
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	KC821606	Cellulophaga phage phi12:2, complete genome	1257-1288	9	0.719
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	KT070867	Bacillus phage PBC2, complete genome	154855-154886	9	0.719
NZ_CP016828_1	1.6\|1118517\|33\|NZ_CP016828\|PILER-CR	1118517-1118549	33	AP022649	Bacillus wiedmannii PL1 plasmid pBwiPL1-6 DNA, complete sequence	5394-5426	10	0.697
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1538980-1539011	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1187025-1187056	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1615960-1615991	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1459996-1460027	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1531874-1531905	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1459018-1459049	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1526371-1526402	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1526372-1526403	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1459988-1460019	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1459341-1459372	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1459978-1460009	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1539145-1539176	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1539126-1539157	10	0.688
NZ_CP016828_1	1.14\|1118213\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118213-1118244	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1539107-1539138	10	0.688
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	KC821631	Cellulophaga phage phi48:1, complete genome	1257-1288	10	0.688
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	KC821628	Cellulophaga phage phi18:4, complete genome	1257-1288	10	0.688
NZ_CP016828_1	1.19\|1118518\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118518-1118549	32	NC_021805	Cellulophaga phage phi12a:1, complete genome	1257-1288	10	0.688
NZ_CP016828_1	1.23\|1118762\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118762-1118793	32	KU160664	Arthrobacter phage Salgado, complete genome	140-171	11	0.656
NZ_CP016828_1	1.23\|1118762\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118762-1118793	32	MF140418	Arthrobacter phage LiSara, complete genome	140-171	11	0.656
NZ_CP016828_1	1.23\|1118762\|32\|NZ_CP016828\|CRISPRCasFinder,CRT	1118762-1118793	32	KU160654	Arthrobacter phage Laroye, complete genome	140-171	11	0.656

1. spacer 4.1|3216064|40|NZ_CP016828|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 7.1|4388135|42|NZ_CP016828|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 7.2|4388194|40|NZ_CP016828|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

catggcgtagaaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
****************************************

4. spacer 3.1|2372251|38|NZ_CP016828|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP038598 (Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.3, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

6. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP033827 (Klebsiella sp. FDAARGOS_511 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

7. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP029125 (Enterobacter hormaechei strain AR432 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

8. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_AP019693 (Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 plasmid pSL180013-1, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

9. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP030192 (Salmonella enterica strain SA20104250 plasmid pSA20104250.2, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

10. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP039274 (Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.4, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

11. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP016528 (Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_4, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

12. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP030227 (Salmonella enterica strain SA20041605 plasmid pSA20041605.2, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

13. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NC_013090 (Endophytic bacterium LOB-07 plasmid pLK39, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

14. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP030009 (Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204002, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

15. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP011606 (Citrobacter freundii strain CAV1321 plasmid pCAV1321-4310, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

16. spacer 1.2|1118273|33|NZ_CP016828|PILER-CR matches to NZ_CP044113 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.788

gaaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
gaaaagggccgcattagcggccc----ttttcggaga	Protospacer
***************..******    ** ***

17. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP038598 (Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.3, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

18. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP033827 (Klebsiella sp. FDAARGOS_511 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

19. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP029125 (Enterobacter hormaechei strain AR432 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

20. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_AP019693 (Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 plasmid pSL180013-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

21. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP030192 (Salmonella enterica strain SA20104250 plasmid pSA20104250.2, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

22. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP039274 (Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.4, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

23. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP016528 (Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_4, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

24. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP030227 (Salmonella enterica strain SA20041605 plasmid pSA20041605.2, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

25. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NC_013090 (Endophytic bacterium LOB-07 plasmid pLK39, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

26. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP030009 (Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204002, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

27. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP011606 (Citrobacter freundii strain CAV1321 plasmid pCAV1321-4310, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

28. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP044113 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

aaaagggccgcattgacggccctgtgttatcg----	CRISPR spacer
aaaagggccgcattagcggccc----ttttcggaga	Protospacer
**************..******    ** ***

29. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to MN693005 (Marine virus AFVG_117M50, complete genome) position: , mismatch: 7, identity: 0.781

atttttcagactcatcaaaataatcctttaat	CRISPR spacer
tttgttcatactcatcaaaataatctataact	Protospacer
 ** **** ****************. * * *

30. spacer 1.1|1118212|33|NZ_CP016828|PILER-CR matches to NZ_CP012265 (Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence) position: , mismatch: 8, identity: 0.758

aggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
aagaactggcgctgctggagaaaatccgcaaag	Protospacer
*.****************** *** **  . *

31. spacer 1.6|1118517|33|NZ_CP016828|PILER-CR matches to MN693005 (Marine virus AFVG_117M50, complete genome) position: , mismatch: 8, identity: 0.758

gatttttcagactcatcaaaataatcctttaat	CRISPR spacer
ctttgttcatactcatcaaaataatctataact	Protospacer
  ** **** ****************. * * *

32. spacer 1.11|1118822|33|NZ_CP016828|PILER-CR matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 8, identity: 0.758

gacacctctactgacgttcctgaacaagaagat	CRISPR spacer
gacacctccactggcgttcctgaacgtattcat	Protospacer
********.****.***********. .   **

33. spacer 1.11|1118822|33|NZ_CP016828|PILER-CR matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 8, identity: 0.758

gacacctctactgacgttcctgaacaagaagat	CRISPR spacer
gacacctccactggcgttcctgaacgtattcat	Protospacer
********.****.***********. .   **

34. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP012265 (Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence) position: , mismatch: 8, identity: 0.75

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
agaactggcgctgctggagaaaatccgcaaag	Protospacer
.****************** *** **  . *

35. spacer 1.15|1118274|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NC_019341 (Pseudomonas syringae plasmid pNCPPB880-40, complete sequence) position: , mismatch: 8, identity: 0.75

aaaagggccgcattgacggccctgtgttatcg	CRISPR spacer
aaaagggccgcattagcggcccttttaatttg	Protospacer
**************..******* *    *.*

36. spacer 1.17|1118396|32|NZ_CP016828|CRISPRCasFinder,CRT matches to AB452989 (Serratia phage KSP20 orf7 to orf11 genes for scaffolding protein, major capsid protein, terminase, head completion protein, hypothetical protein, complete and partial cds) position: , mismatch: 8, identity: 0.75

gggtggcggtggtgctgtaattcacaccggta	CRISPR spacer
ggcgcgtggtggtgctgttgttcacaccggcc	Protospacer
**   *.*********** .**********.

37. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to MK295204 (Shigella phage vB_SdyM_006, complete genome) position: , mismatch: 8, identity: 0.75

atttttcagactcatcaaaataatcctttaat-----	CRISPR spacer
gtttttcataatcatcaaaataatc-----atgacca	Protospacer
.******* * **************     **

38. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to MG696114 (Proteus phage phiP4-3, complete genome) position: , mismatch: 8, identity: 0.75

atttttcagactcatcaaaataatcctttaat-----	CRISPR spacer
gtttttcataatcatcaaaataatc-----atgacca	Protospacer
.******* * **************     **

39. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP017949 (Tenericutes bacterium MO-XQ plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

-----atttttcagactcatcaaaataatcctttaat	CRISPR spacer
cagtgatt-----aacccatctaaataatcctttaat	Protospacer
     ***     .**.**** ***************

40. spacer 1.22|1118701|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcaaacagtatcaccgcgttaacgcccgc	CRISPR spacer
cccacaaacagtagcatcgcgttaacgatcaa	Protospacer
**  ********* **.********** .*.

41. spacer 1.24|1118823|32|NZ_CP016828|CRISPRCasFinder,CRT matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 8, identity: 0.75

acacctctactgacgttcctgaacaagaagat	CRISPR spacer
acacctccactggcgttcctgaacgtattcat	Protospacer
*******.****.***********. .   **

42. spacer 1.24|1118823|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 8, identity: 0.75

acacctctactgacgttcctgaacaagaagat	CRISPR spacer
acacctccactggcgttcctgaacgtattcat	Protospacer
*******.****.***********. .   **

43. spacer 1.6|1118517|33|NZ_CP016828|PILER-CR matches to MK295204 (Shigella phage vB_SdyM_006, complete genome) position: , mismatch: 9, identity: 0.727

gatttttcagactcatcaaaataatcctttaat-----	CRISPR spacer
cgtttttcataatcatcaaaataatc-----atgacca	Protospacer
 .******* * **************     **

44. spacer 1.6|1118517|33|NZ_CP016828|PILER-CR matches to MG696114 (Proteus phage phiP4-3, complete genome) position: , mismatch: 9, identity: 0.727

gatttttcagactcatcaaaataatcctttaat-----	CRISPR spacer
cgtttttcataatcatcaaaataatc-----atgacca	Protospacer
 .******* * **************     **

45. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
ggccaaggcgctgctggaacagaacccggacc	Protospacer
**    ************.**.*******  .

46. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to AP022649 (Bacillus wiedmannii PL1 plasmid pBwiPL1-6 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

atttttcagactcatcaaaataatcctttaat	CRISPR spacer
ccctatcatattcatcaaaataatcctttgcg	Protospacer
 ..* *** *.******************.

47. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to KC821606 (Cellulophaga phage phi12:2, complete genome) position: , mismatch: 9, identity: 0.719

atttttcagactcatcaaaataatcctttaat	CRISPR spacer
gttttttaaactcatcaaaataataacctacc	Protospacer
.*****.*.***************  ..** .

48. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to KT070867 (Bacillus phage PBC2, complete genome) position: , mismatch: 9, identity: 0.719

atttttcagactcatcaaaataatcctttaat	CRISPR spacer
atttttcagacttatcaaaagaacagtcggaa	Protospacer
************.******* **.  *. .*

49. spacer 1.6|1118517|33|NZ_CP016828|PILER-CR matches to AP022649 (Bacillus wiedmannii PL1 plasmid pBwiPL1-6 DNA, complete sequence) position: , mismatch: 10, identity: 0.697

gatttttcagactcatcaaaataatcctttaat	CRISPR spacer
tccctatcatattcatcaaaataatcctttgcg	Protospacer
  ..* *** *.******************.

50. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

51. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
cctgctggcggtgctggagcagaaccccgcgg	Protospacer
   .****** **********.***** *..

52. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

53. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

54. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

55. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

56. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

57. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

58. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

59. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

60. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

61. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

62. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

63. spacer 1.14|1118213|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggaactggcgctgctggagcaaaacccggtat	CRISPR spacer
tcaactggcgctgctggaggacaacgagcggc	Protospacer
  ***************** * ***  *  ..

64. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to KC821631 (Cellulophaga phage phi48:1, complete genome) position: , mismatch: 10, identity: 0.688

atttttcagactcatcaaaataatcctttaat	CRISPR spacer
gttttttaaactcatcaaaataataacccacc	Protospacer
.*****.*.***************  ...* .

65. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to KC821628 (Cellulophaga phage phi18:4, complete genome) position: , mismatch: 10, identity: 0.688

atttttcagactcatcaaaataatcctttaat	CRISPR spacer
gttttttaaactcatcaaaataataacccacc	Protospacer
.*****.*.***************  ...* .

66. spacer 1.19|1118518|32|NZ_CP016828|CRISPRCasFinder,CRT matches to NC_021805 (Cellulophaga phage phi12a:1, complete genome) position: , mismatch: 10, identity: 0.688

atttttcagactcatcaaaataatcctttaat	CRISPR spacer
gttttttaaactcatcaaaataataacccacc	Protospacer
.*****.*.***************  ...* .

67. spacer 1.23|1118762|32|NZ_CP016828|CRISPRCasFinder,CRT matches to KU160664 (Arthrobacter phage Salgado, complete genome) position: , mismatch: 11, identity: 0.656

ccacacacgtcgagctggtgggggttaatgct	CRISPR spacer
aacggggcgtcgggctggtgggggtgaatgta	Protospacer
    . .*****.************ ****.

68. spacer 1.23|1118762|32|NZ_CP016828|CRISPRCasFinder,CRT matches to MF140418 (Arthrobacter phage LiSara, complete genome) position: , mismatch: 11, identity: 0.656

ccacacacgtcgagctggtgggggttaatgct	CRISPR spacer
aacggggcgtcgggctggtgggggtgaatgta	Protospacer
    . .*****.************ ****.

69. spacer 1.23|1118762|32|NZ_CP016828|CRISPRCasFinder,CRT matches to KU160654 (Arthrobacter phage Laroye, complete genome) position: , mismatch: 11, identity: 0.656

ccacacacgtcgagctggtgggggttaatgct	CRISPR spacer
aacggggcgtcgggctggtgggggtgaatgta	Protospacer
    . .*****.************ ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

843583 : 920663

Escherichia_phage(14.29%)

integrase,transposase,protease,tRNA,plate

attL 883453:883470|attR 928391:928408

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001390300.1\|843583_845386_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_001173975.1\|845376_846309_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000198270.1\|846321_848304_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.2e-12	35.6
WP_000005080.1\|848314_848782_+	hypothetical protein	NA	NA	NA	NA
WP_001390299.1\|848791_849091_+	type VI secretion protein	NA	NA	NA	NA
WP_001033155.1\|849094_850171_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_000152746.1\|850178_850730_+	type VI secretion protein	NA	NA	NA	NA
WP_001154665.1\|850748_852161_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001028113.1\|852499_853090_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000914956.1\|853095_856500_+	type VI secretion protein	NA	NA	NA	NA
WP_000029846.1\|856503_859053_+	type VI secretion system ATPase TssH	A0A1C3S747	Escherichia_phage	4.6e-92	33.8
WP_085947771.1\|861597_862759_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-51	40.6
WP_001391950.1\|863832_864051_+	hypothetical protein	NA	NA	NA	NA
WP_000359994.1\|864529_865684_+	hypothetical protein	NA	NA	NA	NA
WP_000555380.1\|866998_868132_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_077577697.1\|868171_868534_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	6.4e-40	62.5
WP_000555401.1\|869115_870249_+\|transposase	IS110-like element ISEc45 family transposase	NA	NA	NA	NA
WP_000624688.1\|871957_872308_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	6.2e-40	63.8
WP_001309734.1\|872304_872739_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-19	60.3
WP_001045649.1\|873710_877829_-\|protease	serine protease autotransporter toxin Pic	Q9LA54	Enterobacteria_phage	0.0e+00	45.8
WP_000227970.1\|878615_879692_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001189118.1\|880233_881742_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.2e-44	31.8
WP_001254936.1\|882904_884056_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	3.4e-42	35.6
883453:883470	attL	NA	NA	NA	NA
WP_000747051.1\|883975_884326_-\|transposase	transposase	Q716C1	Shigella_phage	1.8e-39	98.9
WP_001091149.1\|884395_884689_-	hypothetical protein	NA	NA	NA	NA
WP_000081335.1\|884777_887648_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_000105162.1\|887650_889279_-	site-specific DNA-methyltransferase	A0A0K1LNZ9	Escherichia_phage	4.6e-85	42.6
WP_000126413.1\|889288_891676_-	S8 family peptidase	NA	NA	NA	NA
WP_001273465.1\|891685_892666_-	ATP-binding protein	A0A1B2RW50	Lymphocystis_disease_virus	4.2e-17	30.2
WP_000286652.1\|892691_895541_-	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	2.2e-183	39.6
WP_071530044.1\|896811_897027_+	hypothetical protein	NA	NA	NA	NA
WP_001218809.1\|898524_899787_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	6.9e-81	43.1
WP_000234526.1\|900165_900873_-	DUF554 domain-containing protein	NA	NA	NA	NA
WP_000839766.1\|901270_903406_+	ornithine decarboxylase	NA	NA	NA	NA
WP_001049791.1\|903455_904712_-	nucleoside permease	NA	NA	NA	NA
WP_001298916.1\|904913_905993_-	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_000091700.1\|906057_906333_-	oxidative damage protection protein	NA	NA	NA	NA
WP_001297399.1\|906360_907413_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000786911.1\|907573_908293_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001107564.1\|908292_908619_+	YggL family protein	NA	NA	NA	NA
WP_000984796.1\|908802_909522_+	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_000394125.1\|909697_910744_+	L-asparaginase 2	NA	NA	NA	NA
WP_000745217.1\|910860_911868_+	DUF1202 family protein	NA	NA	NA	NA
WP_000239939.1\|912022_913159_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_001174743.1\|913151_913745_-	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_001277222.1\|913752_914043_-	YggU family protein	NA	NA	NA	NA
WP_001094831.1\|914039_914606_-	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_000997795.1\|914623_915328_-	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001349546.1\|915345_916326_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000017106.1\|916501_916918_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001053178.1\|916917_917481_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000593273.1\|917589_918540_-	glutathione synthase	NA	NA	NA	NA
WP_001222508.1\|918552_919284_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000286500.1\|919363_920071_-	deoxyribonuclease I	NA	NA	NA	NA
WP_000858396.1\|920165_920663_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
928391:928408	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1161151 : 1168291

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278994.1\|1161151_1161790_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_000590392.1\|1161786_1163049_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_000847985.1\|1163045_1163954_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_001297141.1\|1164149_1164917_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_001141316.1\|1164967_1165624_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	1.5e-50	46.8
WP_001272924.1\|1165729_1168291_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6

DBSCAN-SWA_3

1769240 : 1778682

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569326.1\|1769240_1770167_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8
WP_000783120.1\|1770171_1770903_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1770883_1770991_-	protein YohO	NA	NA	NA	NA
WP_001240401.1\|1771050_1771782_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001295431.1\|1772003_1773689_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1773685_1774405_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1774451_1774922_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1774962_1775424_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001351453.1\|1775548_1777549_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.3
WP_001292767.1\|1777545_1778682_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.6e-161	97.1

DBSCAN-SWA_4

1993864 : 2074905

100

Enterobacteria_phage(71.43%)

integrase,holin,transposase,head,capsid,tail,terminase,portal,plate

attL 2038694:2038753|attR 2075012:2075135

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001254922.1\|1993864_1995016_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	9.8e-42	35.3
WP_001386868.1\|1996962_1997328_+	permease	NA	NA	NA	NA
WP_000365556.1\|1997367_1998063_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	3.6e-07	26.9
WP_001157246.1\|1998129_1999548_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.4e-101	55.6
WP_000786004.1\|1999528_1999999_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	1.5e-33	47.6
WP_001212216.1\|1999987_2000908_-	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_000922679.1\|2001080_2001998_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_000009307.1\|2002076_2002259_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_000491522.1\|2004120_2004936_-	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_000844800.1\|2005234_2005462_-	peroxide/acid resistance protein YodD	NA	NA	NA	NA
WP_071527558.1\|2005570_2005813_+	protein DsrB	NA	NA	NA	NA
WP_000103987.1\|2005856_2006480_-	transcriptional regulator RcsA	NA	NA	NA	NA
WP_000983976.1\|2006769_2007555_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_000187358.1\|2007563_2007833_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_001253441.1\|2007842_2008580_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_001059114.1\|2008579_2008945_-	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001282098.1\|2008947_2009361_-	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_001295641.1\|2009357_2010362_-	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_000133106.1\|2010366_2010831_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_000620097.1\|2010935_2012063_-	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_000807584.1\|2012059_2012503_-	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
WP_000213294.1\|2012521_2013895_-	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_001282706.1\|2013894_2014581_-	flagellar assembly protein FliH	NA	NA	NA	NA
WP_000067950.1\|2014573_2015569_-	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_000994471.1\|2015561_2017220_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_001301376.1\|2017434_2017749_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_001070440.1\|2018092_2018425_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_001386867.1\|2018593_2019145_+	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_000879825.1\|2019154_2019952_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015674555.1\|2020108_2020633_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	2.2e-33	60.0
WP_001336494.1\|2020655_2020985_+	helix-turn-helix domain-containing protein	A0A1B0VCD8	Salmonella_phage	8.1e-42	86.6
WP_000334575.1\|2020866_2021364_-	hypothetical protein	A0A2H4J5W2	uncultured_Caudovirales_phage	3.8e-51	64.5
WP_000790504.1\|2021472_2021706_-	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_000118890.1\|2021702_2022908_-	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_001295642.1\|2023094_2023508_+	lipoprotein	NA	NA	NA	NA
WP_001245699.1\|2023541_2025029_-	alpha-amylase	NA	NA	NA	NA
WP_001057844.1\|2025106_2025472_-	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_000270663.1\|2025471_2025882_-	flagellar export chaperone FliS	NA	NA	NA	NA
WP_000146830.1\|2025897_2027313_-	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_000079759.1\|2027560_2028610_+	flagellin FliC	NA	NA	NA	NA
WP_001087467.1\|2028773_2029493_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_001386865.1\|2029538_2030090_+	flagella biosynthesis regulatory protein FliZ	NA	NA	NA	NA
WP_001317901.1\|2030177_2030978_+	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001128215.1\|2031082_2032069_+	D-cysteine desulfhydrase	NA	NA	NA	NA
WP_001158220.1\|2032083_2032752_+	cystine ABC transporter permease	NA	NA	NA	NA
WP_088888689.1\|2032748_2033501_+	L-cystine ABC transporter ATP-binding protein YecC	G3M9Y6	Bacillus_virus	2.9e-26	34.9
WP_001152713.1\|2033730_2034453_+	transcriptional regulator SdiA	NA	NA	NA	NA
WP_000106474.1\|2034520_2034745_-	DUF2594 family protein	NA	NA	NA	NA
WP_000590344.1\|2034731_2034908_-	hypothetical protein	NA	NA	NA	NA
WP_000611335.1\|2035203_2035860_+	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_001283421.1\|2035856_2037689_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_001160187.1\|2037745_2038294_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
2038694:2038753	attL	NA	NA	NA	NA
WP_001303543.1\|2039286_2039568_+	hypothetical protein	NA	NA	NA	NA
WP_000078920.1\|2039756_2039897_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
WP_000488112.1\|2040088_2040349_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000132776.1\|2040391_2041501_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	4.1e-202	98.1
WP_000005414.1\|2041658_2042843_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	3.8e-222	98.0
WP_000290443.1\|2042842_2043355_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.7e-92	98.8
WP_001391627.1\|2043799_2043928_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	1.5e-15	95.2
WP_001390260.1\|2043914_2046722_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	92.5
WP_000979946.1\|2046734_2047223_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	8.8e-85	99.4
WP_000954195.1\|2047379_2047952_+	serine acetyltransferase	NA	NA	NA	NA
WP_000144016.1\|2047995_2048574_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.7e-96	89.0
WP_032251415.1\|2048573_2050706_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	8.0e-130	66.0
WP_001430423.1\|2050708_2051239_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	2.1e-92	98.8
WP_032251416.1\|2051231_2052128_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	5.7e-154	97.3
WP_000213447.1\|2052131_2052482_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_032251417.1\|2052478_2053060_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	4.3e-102	97.9
WP_032251418.1\|2053056_2053692_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	7.6e-113	99.1
WP_000921128.1\|2053684_2054152_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.1e-83	96.1
WP_000202135.1\|2054175_2056056_-	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	3.8e-301	81.0
WP_000780558.1\|2056194_2056602_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	1.2e-63	95.6
WP_000072317.1\|2056598_2056991_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	6.4e-70	97.7
WP_032251421.1\|2056987_2057311_-\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	2.0e-48	95.3
WP_000864893.1\|2057313_2057514_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.0e-31	98.5
WP_000063103.1\|2057513_2058008_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.2e-89	99.4
WP_000632318.1\|2058109_2058910_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.6e-130	91.4
WP_001055094.1\|2058955_2060008_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	3.2e-188	94.3
WP_032251422.1\|2060031_2060868_-\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	7.9e-150	99.6
WP_000613754.1\|2061022_2062774_+\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	98.3
WP_000087814.1\|2062773_2063820_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.2e-202	99.7
WP_000236495.1\|2063834_2064359_-	hypothetical protein	NA	NA	NA	NA
WP_000224227.1\|2064945_2065209_-	hypothetical protein	A0A2P0P958	Salmonella_phage	8.8e-31	72.4
WP_032251424.1\|2065210_2065681_-	hypothetical protein	Q8HAA7	Salmonella_phage	3.2e-15	40.0
WP_000211293.1\|2065700_2066015_-	peptide transporter	A0A0A7NPT5	Enterobacteria_phage	3.5e-18	51.9
WP_032251426.1\|2066019_2066979_-	recombinase	A0A0A7NPX4	Enterobacteria_phage	3.5e-178	98.7
WP_000123437.1\|2067055_2069878_-	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	96.7
WP_000599403.1\|2069884_2070250_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	2.1e-59	95.9
WP_000153684.1\|2070391_2070637_-	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	3.4e-37	91.4
WP_000985145.1\|2070633_2070837_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.3e-26	86.6
WP_000021668.1\|2070923_2071037_-	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.2e-08	91.9
WP_000514281.1\|2071033_2071276_-	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	4.4e-37	98.8
WP_000159462.1\|2071287_2071566_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.6e-35	81.5
WP_000739029.1\|2071576_2071927_-	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.6e-50	81.9
WP_000014504.1\|2071948_2072152_-	DNA-binding protein	P79674	Haemophilus_phage	3.1e-07	45.2
WP_001673482.1\|2072223_2072361_+	hypothetical protein	NA	NA	NA	NA
WP_000786769.1\|2072450_2072855_+	transcriptional regulator	Q6QID2	Burkholderia_phage	1.6e-23	53.8
WP_000290355.1\|2072870_2073521_+	membrane protein	NA	NA	NA	NA
WP_000865208.1\|2073550_2073898_+	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_001300279.1\|2073903_2074905_+\|integrase	tyrosine-type recombinase/integrase	Q94N03	Haemophilus_virus	4.2e-105	58.5
2075012:2075135	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2104308 : 2168370

Enterobacteria_phage(51.67%)

integrase,holin,transposase,lysis,tRNA,head,capsid,terminase,tail,portal

attL 2106853:2106868|attR 2133455:2133470

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001025327.1\|2104308_2106042_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	6.8e-87	33.7
WP_001326063.1\|2106257_2106824_+	VOC family protein	NA	NA	NA	NA
WP_001185740.1\|2106837_2107584_+	copper homeostasis protein CutC	NA	NA	NA	NA
2106853:2106868	attL	NA	NA	NA	NA
WP_001214304.1\|2107971_2109072_+	cytochrome c	NA	NA	NA	NA
WP_000176815.1\|2109096_2111526_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA
WP_000399648.1\|2111795_2112776_+\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000564745.1\|2112969_2113941_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|2113937_2114681_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252979.1\|2114721_2115117_-	membrane protein	NA	NA	NA	NA
WP_044713004.1\|2115169_2115940_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.1e-72	99.2
WP_000362003.1\|2115921_2117232_-\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	3.0e-244	95.4
WP_000528718.1\|2117287_2117524_-	excisionase family protein	Q8W657	Enterobacteria_phage	6.4e-41	100.0
WP_001030156.1\|2117532_2117679_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	1.6e-21	93.8
WP_000457723.1\|2117682_2117925_-	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.3e-32	87.5
WP_000628772.1\|2118009_2118768_-	phage protein	A0A1U9AJ59	Stx1_converting_phage	2.7e-109	82.0
WP_000065512.1\|2119281_2119830_-	ead/Ea22-like family protein	A0A1I9LJM5	Stx_converting_phage	1.4e-59	97.5
WP_000476207.1\|2119826_2120066_-	hypothetical protein	S5MQM0	Escherichia_phage	9.1e-35	96.2
WP_000111289.1\|2120058_2120262_-	hypothetical protein	K7PLX1	Enterobacteria_phage	1.0e-31	98.5
WP_001242713.1\|2120258_2120621_-	phage protein	K7PH61	Enterobacteria_phage	6.8e-66	97.5
WP_000008178.1\|2120611_2121148_-	5'-deoxynucleotidase	A0A0P0ZCH9	Stx2-converting_phage	2.2e-100	99.4
WP_000081306.1\|2121275_2122100_-	DUF2303 family protein	K7PJQ6	Enterobacteria_phage	1.1e-148	98.9
WP_000179185.1\|2122165_2122528_-	hypothetical protein	Q8SBF8	Shigella_phage	7.5e-57	94.2
WP_001387485.1\|2123230_2123923_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	6.4e-121	96.1
WP_001191669.1\|2124020_2124281_+	helix-turn-helix transcriptional regulator	K7PJQ8	Enterobacteria_phage	5.4e-41	100.0
WP_000526669.1\|2124273_2124831_+	hypothetical protein	Q8SBF4	Shigella_phage	5.3e-94	94.1
WP_001087340.1\|2124827_2125973_+	peptidase	A5LH69	Enterobacteria_phage	3.1e-173	83.5
WP_000620687.1\|2125969_2126194_+	hypothetical protein	A5LH70	Enterobacteria_phage	2.4e-37	95.9
WP_000061508.1\|2126190_2127009_+	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	2.8e-123	88.1
WP_001387484.1\|2127005_2127500_+	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	1.5e-84	96.3
WP_000066917.1\|2127499_2128153_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
WP_000210143.1\|2128149_2128476_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	2.7e-53	98.1
WP_000767110.1\|2128472_2128868_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	5.7e-66	98.4
WP_001072669.1\|2129030_2129846_+	KilA-N domain-containing protein	U5P4K5	Shigella_phage	8.5e-149	99.3
WP_001358491.1\|2129853_2130843_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-194	99.4
WP_001205470.1\|2130860_2131217_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.3e-58	92.0
WP_000150292.1\|2131196_2132411_-	hypothetical protein	NA	NA	NA	NA
WP_000355468.1\|2132413_2133589_-	hypothetical protein	NA	NA	NA	NA
2133455:2133470	attR	NA	NA	NA	NA
WP_000917737.1\|2133855_2134053_+	hypothetical protein	S5MQK8	Escherichia_phage	2.6e-27	96.9
WP_000301785.1\|2134187_2134901_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000874454.1\|2135667_2137629_+	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	3.9e-240	64.2
WP_000142785.1\|2137764_2137959_+	DUF1378 family protein	S5MBZ5	Escherichia_phage	9.4e-22	86.7
WP_001289722.1\|2137984_2138254_+	DUF826 domain-containing protein	A0A2R2Z348	Escherichia_phage	8.2e-08	74.2
WP_000284510.1\|2138329_2138545_+\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_000731267.1\|2138549_2138894_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	7.2e-57	97.4
WP_001092883.1\|2138944_2139478_+	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_001082546.1\|2139776_2140244_+\|lysis	lysis protein	Q9ZXB6	Enterobacteria_phage	3.4e-78	99.4
WP_000347013.1\|2140594_2140735_+	hypothetical protein	NA	NA	NA	NA
WP_015674556.1\|2140867_2141053_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	4.1e-19	81.4
WP_000867568.1\|2141447_2141996_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_001390579.1\|2141967_2143896_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	7.4e-260	66.6
WP_000259002.1\|2143879_2144086_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_000831738.1\|2144082_2145675_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.2e-184	60.5
WP_001254006.1\|2145664_2147170_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-100	54.0
WP_000256796.1\|2147206_2147554_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	4.4e-22	57.0
WP_000522645.1\|2147611_2148640_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.1e-113	61.0
WP_001390684.1\|2148692_2149061_+	hypothetical protein	NA	NA	NA	NA
WP_001204567.1\|2149053_2149407_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.9e-41	70.1
WP_000975015.1\|2149422_2150001_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	4.9e-74	90.6
WP_000683112.1\|2149997_2150393_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	2.2e-70	99.2
WP_001401350.1\|2150400_2151141_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	5.0e-132	99.2
WP_000479153.1\|2151156_2151579_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.7e-73	100.0
WP_000459468.1\|2151560_2151995_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.7e-63	98.3
WP_000840228.1\|2151987_2154549_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	99.6
WP_000847379.1\|2154545_2154875_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152493.1\|2154874_2155573_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.8e-132	98.7
WP_000194780.1\|2155577_2156321_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_000090891.1\|2156257_2156890_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_000515636.1\|2156950_2160430_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.0
WP_001580506.1\|2160497_2161097_+	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	1.0e-106	95.5
WP_000216489.1\|2161248_2164419_+	hypothetical protein	X2KTY7	Enterobacteria_phage	1.3e-83	59.1
WP_000885566.1\|2164418_2165003_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.3e-102	94.3
WP_001217553.1\|2165118_2165367_-	DinI family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
WP_000891610.1\|2165721_2166288_-	hydrolase	NA	NA	NA	NA
WP_001258662.1\|2166597_2168370_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_6

2401534 : 2538676

156

Escherichia_phage(34.41%)

integrase,holin,lysis,protease,capsid,tRNA,head,terminase,tail,portal

attL 2433427:2433442|attR 2493760:2493777

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001339629.1\|2401534_2402809_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	8.8e-84	41.4
WP_000789751.1\|2402870_2403731_+	pyridoxal kinase PdxY	NA	NA	NA	NA
WP_000765749.1\|2403774_2404380_-	glutathione transferase GstA	NA	NA	NA	NA
WP_000100951.1\|2404485_2405988_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_001030339.1\|2406598_2407234_-	endonuclease III	NA	NA	NA	NA
WP_001289657.1\|2407233_2407929_-	electron transport complex subunit E	NA	NA	NA	NA
WP_000920778.1\|2407932_2408553_-	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_000231922.1\|2408556_2409615_-	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_000915770.1\|2409615_2411742_-	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_000991809.1\|2411734_2412313_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_000133193.1\|2412312_2412894_-	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_000214176.1\|2412970_2413411_-	DUF2569 domain-containing protein	NA	NA	NA	NA
WP_000217950.1\|2413496_2413712_-	transcription modulator YdgT	NA	NA	NA	NA
WP_001300888.1\|2413984_2414110_-	division septum protein Blr	NA	NA	NA	NA
WP_001282516.1\|2414352_2415393_+	oxidoreductase	NA	NA	NA	NA
WP_000567490.1\|2415427_2416429_-	adenosine deaminase	NA	NA	NA	NA
WP_000459416.1\|2416532_2417705_-	bifunctional maltose regulon transcriptional repressor/cystathionine beta-lyase MalY	NA	NA	NA	NA
WP_000125609.1\|2417714_2419307_-	PTS maltose transporter subunit IICB	NA	NA	NA	NA
WP_000179513.1\|2419481_2420510_+	Mal regulon transcriptional regulator MalI	NA	NA	NA	NA
WP_000483362.1\|2420621_2421389_+	7-alpha-hydroxysteroid dehydrogenase	NA	NA	NA	NA
WP_000969095.1\|2421617_2422208_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000945924.1\|2422596_2424408_+	beta-glucuronidase	B9U1V4	Vaccinia_virus	0.0e+00	99.7
WP_001075893.1\|2424404_2425778_+	glucuronide transporter	NA	NA	NA	NA
WP_001227018.1\|2425816_2427082_+	glucuronide uptake porin UidC	NA	NA	NA	NA
WP_001043342.1\|2427126_2428635_-	YdgA family protein	NA	NA	NA	NA
WP_001170701.1\|2428735_2429911_-	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_000066636.1\|2430109_2431756_+	fumarate hydratase	NA	NA	NA	NA
WP_001099102.1\|2431898_2433302_+	class II fumarate hydratase	NA	NA	NA	NA
WP_001387709.1\|2433298_2434228_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
2433427:2433442	attL	NA	NA	NA	NA
WP_000732487.1\|2434303_2435605_-	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	7.2e-17	23.9
2433427:2433442	attL	NA	NA	NA	NA
WP_001092504.1\|2435608_2436328_-	two-component system response regulator RstA	NA	NA	NA	NA
WP_000524868.1\|2436456_2436792_+	GlpM family protein	NA	NA	NA	NA
WP_000513673.1\|2436788_2437511_-	dihydromonapterin reductase	NA	NA	NA	NA
WP_000412392.1\|2437547_2438930_-	bifunctional siderophore receptor/adhesin Iha	NA	NA	NA	NA
WP_000769322.1\|2439115_2440060_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001295398.1\|2440583_2442116_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_000014036.1\|2442126_2443515_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_000085276.1\|2444621_2445851_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.6e-130	55.4
WP_000953272.1\|2446216_2446405_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	2.0e-13	66.0
WP_088888692.1\|2446462_2447488_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_032346737.1\|2447480_2447942_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000076671.1\|2447938_2448169_+	hypothetical protein	A0A1W6JPD9	Morganella_phage	4.5e-07	49.1
WP_000336138.1\|2448158_2448380_+	hypothetical protein	NA	NA	NA	NA
WP_000551751.1\|2448372_2448738_+	hypothetical protein	NA	NA	NA	NA
WP_001204078.1\|2448730_2448964_+	hypothetical protein	NA	NA	NA	NA
WP_088888693.1\|2448956_2449190_+	hypothetical protein	NA	NA	NA	NA
WP_000770179.1\|2449195_2449495_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000761836.1\|2449491_2451246_+	DNA primase	Q7M2A8	Enterobacteria_phage	3.2e-92	40.0
WP_000557476.1\|2451534_2451813_+	hypothetical protein	NA	NA	NA	NA
WP_000126693.1\|2451809_2452220_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000233313.1\|2452232_2452505_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001137337.1\|2452792_2453950_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.3e-137	64.9
WP_000504056.1\|2453989_2454562_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	3.6e-61	63.0
WP_001366055.1\|2454599_2455775_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	3.7e-185	80.2
WP_001020662.1\|2455771_2456110_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.7e-31	52.7
WP_000134109.1\|2456106_2456403_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	6.9e-32	64.3
WP_001145905.1\|2456402_2456843_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.5e-62	72.6
2456645:2456660	attR	NA	NA	NA	NA
WP_000113645.1\|2457131_2457488_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
2456645:2456660	attR	NA	NA	NA	NA
WP_001560954.1\|2457471_2459133_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	8.9e-278	81.7
WP_000133423.1\|2459146_2459428_+	hypothetical protein	NA	NA	NA	NA
WP_001303517.1\|2460425_2460596_+	hypothetical protein	NA	NA	NA	NA
WP_000276149.1\|2460702_2461068_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_000046661.1\|2461054_2461384_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_001260841.1\|2461422_2462244_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|2462343_2462427_-	hypothetical protein	NA	NA	NA	NA
WP_000743951.1\|2462519_2462855_-	acid shock protein	NA	NA	NA	NA
WP_000091806.1\|2463251_2464505_-	MFS transporter	NA	NA	NA	NA
WP_001019532.1\|2464611_2465505_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000225276.1\|2465639_2466860_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919231.1\|2466984_2467680_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_071820512.1\|2467695_2468925_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_000148710.1\|2469083_2469698_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
WP_000526492.1\|2469740_2470595_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000254426.1\|2470596_2471151_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.4e-62	57.7
WP_001387389.1\|2471188_2472352_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.8e-227	99.7
WP_126502590.1\|2472207_2472654_-	helix-turn-helix domain-containing protein	S5FM74	Shigella_phage	1.9e-41	73.9
WP_000497817.1\|2472613_2472865_-	DUF4222 domain-containing protein	G9L6F5	Escherichia_phage	3.9e-36	91.6
WP_000186783.1\|2472916_2473594_-	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	3.0e-131	99.1
WP_000100829.1\|2473590_2474376_-	phage recombination protein Bet	A0A088CBI3	Shigella_phage	9.4e-145	97.3
WP_000995032.1\|2474381_2474678_-	host-nuclease inhibitor protein Gam	V5URU8	Shigella_phage	5.8e-47	93.9
WP_001271587.1\|2474674_2476747_-	exodeoxyribonuclease VIII	V5UQJ3	Shigella_phage	0.0e+00	87.2
WP_000660961.1\|2476854_2477241_-	hypothetical protein	V5USC5	Shigella_phage	9.5e-50	78.9
WP_000560214.1\|2477324_2477546_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	1.1e-34	94.4
WP_000189938.1\|2478002_2478212_+	hypothetical protein	NA	NA	NA	NA
WP_001005964.1\|2478180_2478540_-	hypothetical protein	A0A088CBI5	Shigella_phage	2.7e-38	73.5
WP_001140061.1\|2478571_2478757_-	hypothetical protein	V5URU3	Shigella_phage	1.9e-16	97.8
WP_000256291.1\|2478967_2479273_-	hypothetical protein	C6ZCW1	Enterobacteria_phage	1.4e-35	83.5
WP_000502040.1\|2479606_2479828_+	hypothetical protein	NA	NA	NA	NA
WP_000846393.1\|2479981_2480689_-	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	7.9e-127	99.6
WP_001054988.1\|2480799_2481024_+	helix-turn-helix domain-containing protein	A0A0N7C1T6	Escherichia_phage	1.2e-36	100.0
WP_000084293.1\|2481140_2481437_+	hypothetical protein	A0A088CBI6	Shigella_phage	1.2e-47	99.0
WP_000438870.1\|2481451_2481670_+	hypothetical protein	A0A088CC17	Shigella_phage	1.1e-21	100.0
WP_001390692.1\|2481690_2482773_+	hypothetical protein	V5URT9	Shigella_phage	1.8e-199	96.7
WP_000790392.1\|2482779_2483520_+	ATP-binding protein	A0A088CBP4	Shigella_phage	2.3e-121	87.4
WP_000450864.1\|2483545_2484316_+	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	8.1e-109	82.4
WP_001118163.1\|2484331_2484727_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.0e-31	52.9
WP_000206792.1\|2484783_2485368_+	DUF551 domain-containing protein	A0A0P0ZD75	Stx2-converting_phage	5.5e-33	83.5
WP_001278450.1\|2485483_2485588_+	hypothetical protein	NA	NA	NA	NA
WP_000887482.1\|2485776_2485989_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.4e-16	62.9
WP_000119356.1\|2486198_2486378_+	hypothetical protein	NA	NA	NA	NA
WP_000818160.1\|2486396_2486882_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_000042397.1\|2486932_2487250_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000290554.1\|2487955_2488621_+	hypothetical protein	A0A088CD42	Shigella_phage	1.9e-90	79.2
WP_001076834.1\|2488675_2489086_+	recombination protein NinB	A0A088CBP6	Shigella_phage	3.9e-70	98.5
WP_001254267.1\|2489082_2489265_+	NinE family protein	A0A0P0ZDL7	Stx2-converting_phage	2.4e-27	91.7
WP_000211434.1\|2489539_2490223_+	phage antirepressor Ant	Q8HA19	Enterobacteria_phage	2.3e-107	85.7
WP_001004035.1\|2490297_2491020_+	DNA-binding protein	A0A0N7KZI6	Stx2-converting_phage	1.7e-124	97.5
WP_000002252.1\|2491019_2491310_+	DUF1364 domain-containing protein	A0A088CE53	Shigella_phage	9.3e-50	96.9
WP_001008115.1\|2491306_2491669_+	RusA family crossover junction endodeoxyribonuclease	A0A088CBJ1	Shigella_phage	9.2e-63	98.3
WP_000992060.1\|2491668_2491863_+	protein ninH	A0A088CC23	Shigella_phage	1.4e-30	100.0
WP_001204886.1\|2491855_2492290_+	antitermination protein	G9L695	Escherichia_phage	2.4e-81	98.6
WP_000874467.1\|2493055_2494966_+	SASA family carbohydrate esterase	A0A0N7CGH9	Escherichia_phage	4.9e-280	74.8
WP_000142783.1\|2495105_2495288_+	DUF1378 family protein	S5MBZ5	Escherichia_phage	1.6e-23	91.7
WP_001290235.1\|2495313_2495559_+	DUF826 domain-containing protein	S5MW40	Escherichia_phage	9.1e-14	86.4
WP_000284506.1\|2495635_2495851_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_000087450.1\|2495855_2496389_+	lysozyme	A0A088CC28	Shigella_phage	5.6e-93	91.5
WP_000675931.1\|2496609_2496723_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
WP_077627825.1\|2496944_2497130_+\|lysis	lysis protein	A0A0P0ZDR7	Stx2-converting_phage	2.8e-23	96.7
WP_000934362.1\|2497263_2497845_-	lipopolysaccharide core heptose(II)-phosphate phosphatase	A0A2L1IV13	Escherichia_phage	6.7e-47	100.0
WP_001086085.1\|2498447_2499263_+\|terminase	terminase	A0A2L1IV66	Escherichia_phage	6.6e-125	99.6
WP_001387707.1\|2499243_2500950_+\|terminase	terminase	A0A2L1IV76	Escherichia_phage	0.0e+00	99.1
WP_032188285.1\|2500949_2503094_+	hypothetical protein	A0A088CE71	Shigella_phage	0.0e+00	100.0
WP_000345000.1\|2503251_2504259_+	hypothetical protein	A0A2L1IV47	Escherichia_phage	1.3e-167	92.8
WP_000214481.1\|2504281_2505496_+\|capsid	N4-gp56 family major capsid protein	A0A088CC32	Shigella_phage	4.7e-228	97.0
WP_001140435.1\|2505550_2505940_+	hypothetical protein	V5UT93	Shigella_phage	1.9e-61	97.7
WP_001290746.1\|2505990_2506452_+	hypothetical protein	A0A2L1IV43	Escherichia_phage	1.1e-68	96.7
WP_000829400.1\|2506435_2506999_+	hypothetical protein	A0A2L1IV64	Escherichia_phage	8.3e-103	99.5
WP_000207928.1\|2506998_2507649_+	hypothetical protein	A0A0P0ZG46	Escherichia_phage	1.2e-118	98.6
WP_000117972.1\|2507645_2509661_+\|tail	tail fiber protein	V5USF3	Shigella_phage	1.3e-78	63.8
WP_000537686.1\|2509743_2510289_+	hypothetical protein	A0A088CD67	Shigella_phage	2.0e-93	99.4
WP_000276176.1\|2510301_2510529_+	hypothetical protein	A0A088CBQ7	Shigella_phage	2.6e-39	98.7
WP_001146334.1\|2510869_2512495_+	hypothetical protein	A0A1I9LJT3	Stx_converting_phage	0.0e+00	97.0
WP_000038923.1\|2512491_2513766_+	host specificity protein J	A0A0N7C124	Escherichia_phage	5.3e-206	92.2
WP_000455632.1\|2513780_2514059_+	hypothetical protein	A0A2L1IV69	Escherichia_phage	9.9e-49	98.9
WP_000274301.1\|2514064_2514682_+	hypothetical protein	A0A2L1IV83	Escherichia_phage	5.7e-121	99.5
WP_032179509.1\|2514808_2515546_+	Ail/Lom family outer membrane beta-barrel protein	A0A2L1IV31	Escherichia_phage	1.2e-136	100.0
WP_000078907.1\|2515778_2515919_+	Hok/Gef family protein	A0A2R2X2B4	Escherichia_phage	3.1e-19	100.0
WP_050487963.1\|2515975_2516377_+	hypothetical protein	A0A088CC37	Shigella_phage	3.5e-71	99.2
WP_088888694.1\|2516468_2517125_+	hypothetical protein	A0A0H4IPM7	Shigella_phage	9.7e-103	99.1
WP_000455654.1\|2517127_2517574_+	hypothetical protein	V5UT82	Shigella_phage	9.9e-75	97.3
WP_000540392.1\|2517583_2517835_+	hypothetical protein	A0A2R2Z351	Escherichia_phage	7.9e-13	100.0
WP_000012440.1\|2517845_2519111_+	hypothetical protein	A0A2L1IV65	Escherichia_phage	8.2e-191	94.5
WP_000331665.1\|2519179_2527534_+	hypothetical protein	Q08J70	Stx2-converting_phage	0.0e+00	95.6
WP_000481379.1\|2527657_2527849_+	hypothetical protein	A0A088CD78	Shigella_phage	8.0e-26	95.2
WP_000628749.1\|2527935_2528664_-	DUF551 domain-containing protein	A0A088CE95	Shigella_phage	6.1e-82	55.1
WP_001289973.1\|2529177_2529663_-	ead/Ea22-like family protein	A5VWB3	Enterobacteria_phage	1.1e-42	86.1
WP_088888695.1\|2529659_2530346_-	ead/Ea22-like family protein	A5VWB1	Enterobacteria_phage	1.8e-38	68.2
WP_001390689.1\|2530332_2530647_-	hypothetical protein	B1GS43	Salmonella_phage	4.0e-38	84.9
WP_001024845.1\|2530600_2530918_-	DUF4752 family protein	A0A1I9LJV1	Stx_converting_phage	2.2e-44	96.7
WP_000763353.1\|2530914_2531136_-	TraR/DksA family transcriptional regulator	A0A0N7C094	Escherichia_phage	1.3e-35	100.0
WP_000107181.1\|2531183_2531816_-	hypothetical protein	A0A088CBR4	Shigella_phage	7.3e-47	68.2
WP_000211519.1\|2532070_2532700_-	phage antirepressor Ant	A0A0P0ZCA2	Stx2-converting_phage	4.5e-97	86.6
WP_000184487.1\|2532949_2533234_-	phage antirepressor Ant	G9L6G2	Escherichia_phage	4.0e-45	85.1
WP_000213043.1\|2533641_2533755_-	dimethylsulfoxide reductase	A0A077SL61	Escherichia_phage	2.1e-05	72.0
WP_001342404.1\|2533765_2536189_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	9.8e-209	48.6
WP_000041536.1\|2536249_2538676_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.3e-213	49.1

DBSCAN-SWA_7

2826552 : 2888022

Enterobacteria_phage(41.18%)

integrase,holin,protease,capsid,head,tail,terminase,portal

attL 2876866:2876880|attR 2895621:2895635

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422045.1\|2826552_2827602_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_000559283.1\|2827821_2828580_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	8.8e-07	23.4
WP_001278904.1\|2828576_2829167_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001291216.1\|2829206_2830079_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001295575.1\|2830179_2830800_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001285661.1\|2830796_2831678_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001386774.1\|2831815_2831860_+	trp operon leader peptide	NA	NA	NA	NA
WP_001194599.1\|2831951_2833514_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763511.1\|2833513_2835109_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001344826.1\|2835112_2836471_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	8.6e-37	40.7
WP_000209520.1\|2836482_2837676_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000443069.1\|2837675_2838482_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000807651.1\|2838862_2839042_+	general stress protein	NA	NA	NA	NA
WP_001056491.1\|2839127_2839628_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001079509.1\|2839673_2840180_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000926528.1\|2840953_2841223_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.7e-19	77.8
WP_000240999.1\|2841279_2841948_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000885576.1\|2842002_2842587_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.7e-103	95.4
WP_000216502.1\|2842586_2845421_-\|tail	tail fiber protein	X2KTY7	Enterobacteria_phage	5.7e-83	59.1
WP_001228314.1\|2845572_2846172_-	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	9.1e-108	97.0
WP_000515776.1\|2846239_2849719_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.6
WP_001332187.1\|2849785_2850124_-	hypothetical protein	NA	NA	NA	NA
WP_000090879.1\|2850197_2850800_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.2e-88	85.1
WP_000140761.1\|2850736_2851480_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.8e-145	94.7
WP_001152522.1\|2851484_2852183_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.4e-130	97.4
WP_000847402.1\|2852182_2852512_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.3e-52	91.7
WP_000082358.1\|2852508_2855082_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	83.9
WP_000533402.1\|2855062_2855476_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000479095.1\|2855502_2855934_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.2e-42	68.8
WP_000235040.1\|2855947_2856700_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	6.7e-132	97.6
WP_000683079.1\|2856707_2857103_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000974999.1\|2857099_2857675_-\|tail	tail protein	A0A2R9YJK4	Escherichia_phage	9.2e-49	57.3
WP_001204198.1\|2857689_2858043_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	3.0e-42	70.1
WP_000201506.1\|2858035_2858404_-	hypothetical protein	NA	NA	NA	NA
WP_000522596.1\|2858455_2859484_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.8e-112	60.4
WP_000256823.1\|2859541_2859889_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	8.9e-23	58.1
WP_001253926.1\|2859925_2861431_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.0e-99	52.8
WP_001387697.1\|2861420_2863013_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	3.8e-185	61.1
WP_000259002.1\|2863009_2863216_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_088888698.1\|2863199_2865170_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.6e-262	67.5
WP_000867569.1\|2865099_2865648_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_000240372.1\|2866048_2866453_-	hypothetical protein	NA	NA	NA	NA
WP_000343118.1\|2866906_2867194_-	hypothetical protein	A0A1P8DTP0	Salmonella_phage	4.0e-29	58.9
WP_001390467.1\|2867272_2867425_-	hypothetical protein	K7PKL2	Enterobacteria_phage	2.8e-21	98.0
WP_001228710.1\|2867453_2867660_-	hypothetical protein	H6WRZ6	Salmonella_phage	2.9e-29	95.6
WP_032159578.1\|2867881_2867968_-	hypothetical protein	NA	NA	NA	NA
WP_001092853.1\|2868522_2869056_-	lysozyme	Q6H9V6	Enterobacteria_phage	8.7e-102	97.2
WP_000731197.1\|2869098_2869905_-	YdfR family protein	Q08JA0	Stx2-converting_phage	3.3e-145	94.8
WP_000284510.1\|2869909_2870125_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_000874307.1\|2870275_2872129_-	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.5
WP_000871291.1\|2872389_2872725_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_001438304.1\|2873005_2873137_-	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	1.1e-05	96.4
WP_000935536.1\|2873935_2874985_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	8.8e-199	95.7
WP_000917746.1\|2875135_2875333_-	hypothetical protein	Q9MC00	Enterobacteria_phage	1.4e-28	96.9
WP_000762880.1\|2875559_2876381_-	antitermination protein	K7P7B9	Enterobacteria_phage	8.5e-80	60.1
WP_000904106.1\|2876377_2876752_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	5.8e-36	63.6
WP_001265083.1\|2876764_2877811_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	5.9e-110	55.0
2876866:2876880	attL	NA	NA	NA	NA
WP_001329966.1\|2877812_2878085_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_000018429.1\|2878252_2878465_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_000150294.1\|2878645_2879311_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001151211.1\|2879485_2879911_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.3e-63	94.0
WP_000095671.1\|2879951_2880914_-	DNA-binding protein	U5P0A0	Shigella_phage	2.1e-69	51.2
WP_000693888.1\|2880936_2881362_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001072337.1\|2881358_2881613_-	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.8e-18	60.3
WP_000233320.1\|2881692_2882112_+	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
WP_000379548.1\|2882408_2882561_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.0e-08	55.3
WP_000394541.1\|2882572_2882911_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-06	51.0
WP_012601410.1\|2882899_2883166_-	hypothetical protein	NA	NA	NA	NA
WP_000449192.1\|2883660_2883849_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001090200.1\|2883845_2884037_+	DUF1482 family protein	NA	NA	NA	NA
WP_000048530.1\|2884129_2886601_+	exonuclease	K7PLW7	Enterobacteria_phage	1.8e-56	59.2
WP_000113189.1\|2886665_2886914_+	excisionase	NA	NA	NA	NA
WP_000113684.1\|2886891_2888022_+\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	4.4e-103	51.4
2895621:2895635	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3247066 : 3353607

122

Escherichia_phage(62.14%)

integrase,holin,lysis,protease,terminase,tail,portal

attL 3251740:3251799|attR 3352682:3352743

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000003662.1\|3247066_3247654_-\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
WP_001186424.1\|3247650_3248358_-	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000107384.1\|3248376_3250170_-	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001058323.1\|3250166_3251285_-	hydrogenase 1 small subunit	NA	NA	NA	NA
3251740:3251799	attL	NA	NA	NA	NA
WP_022581964.1\|3251939_3252269_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_088888702.1\|3252536_3254450_-\|tail	phage tail protein	S5MDN9	Escherichia_phage	6.8e-173	97.6
WP_088888703.1\|3254600_3255224_-	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	1.8e-66	59.9
WP_088888704.1\|3255292_3258988_-	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	80.8
WP_131199704.1\|3259234_3259867_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.1e-99	89.5
WP_088888705.1\|3259812_3260556_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	4.3e-147	96.8
WP_001484085.1\|3260566_3261265_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	6.8e-131	97.4
WP_000847280.1\|3261264_3261594_-\|tail	phage tail protein	S5MW28	Escherichia_phage	1.2e-58	99.1
WP_088888706.1\|3261590_3264239_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	92.9
WP_000532075.1\|3264282_3264591_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	3.0e-54	99.0
WP_000479054.1\|3264617_3265040_-\|tail	phage minor tail protein G	S5MQJ3	Escherichia_phage	5.1e-73	100.0
WP_088888707.1\|3265055_3265805_-\|tail	phage tail protein	S5M7Q5	Escherichia_phage	9.9e-136	98.4
WP_000682704.1\|3265812_3266211_-	hypothetical protein	S5MW30	Escherichia_phage	2.7e-71	100.0
WP_000974964.1\|3266220_3266847_-	hypothetical protein	S5MBY4	Escherichia_phage	7.8e-102	100.0
WP_001281347.1\|3266849_3267131_-	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	1.3e-45	98.9
WP_088888708.1\|3267123_3267450_-	DUF2190 family protein	S5MQJ5	Escherichia_phage	1.8e-49	99.1
WP_157787306.1\|3267537_3269517_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.7
WP_000974564.1\|3269506_3271009_-\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
WP_000102415.1\|3271008_3271221_-	hypothetical protein	S5MBY8	Escherichia_phage	3.0e-29	98.6
WP_088888709.1\|3271217_3273341_-\|terminase	phage terminase large subunit family protein	S5MDQ1	Escherichia_phage	0.0e+00	99.9
WP_016236020.1\|3273337_3273814_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	1.3e-80	96.8
WP_000735655.1\|3274271_3274496_-	hypothetical protein	NA	NA	NA	NA
WP_088888710.1\|3274519_3274987_-\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	3.3e-65	85.8
WP_088888711.1\|3274983_3275517_-	lysozyme	S5MQK2	Escherichia_phage	1.1e-99	96.6
WP_088888739.1\|3275553_3276111_-	hypothetical protein	Q08JA0	Stx2-converting_phage	3.1e-49	82.6
WP_000284510.1\|3276114_3276330_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_088888712.1\|3276407_3276653_-	DUF826 domain-containing protein	A0A088CE63	Shigella_phage	2.5e-19	93.8
WP_000143458.1\|3276693_3276873_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_088888713.1\|3277008_3278955_-	DUF1737 domain-containing protein	S5MDQ7	Escherichia_phage	0.0e+00	98.8
WP_000738072.1\|3279460_3279730_-	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
WP_001365678.1\|3279741_3280701_-	Shiga toxin Stx2a subunit A	A0A0P0ZDQ7	Stx2-converting_phage	3.6e-175	99.7
WP_088888714.1\|3281083_3282142_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.3e-193	92.6
WP_000917768.1\|3282292_3282490_-	hypothetical protein	S5MQK8	Escherichia_phage	6.1e-29	100.0
WP_000640044.1\|3282706_3283267_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.6e-67	69.1
WP_021577231.1\|3283275_3283635_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	8.0e-35	60.9
WP_062881283.1\|3283647_3284697_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.5e-110	54.6
WP_088888715.1\|3284698_3284971_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.0e-10	50.8
WP_001398985.1\|3285137_3285350_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.4e-16	67.1
WP_028985605.1\|3285583_3286099_-	hypothetical protein	A0A076GCN9	Escherichia_phage	1.2e-36	77.6
WP_001224672.1\|3286264_3286447_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	2.0e-26	96.7
WP_157787302.1\|3286539_3286938_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.4e-56	95.8
WP_001369935.1\|3286873_3287200_-	hypothetical protein	Q8VNQ2	Enterobacteria_phage	2.0e-24	88.5
WP_001289674.1\|3287200_3287512_-	hypothetical protein	A0A222YY67	Escherichia_phage	1.1e-48	83.5
WP_001376361.1\|3287498_3287804_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	2.9e-49	93.1
WP_087614068.1\|3287800_3288082_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	7.9e-30	73.6
WP_088888717.1\|3288114_3288831_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	5.7e-72	62.0
WP_001379651.1\|3288864_3289287_-	replication protein	A0A0U2JGJ0	Escherichia_phage	5.7e-72	90.0
WP_157787303.1\|3289318_3290350_-	phage replisome organizer	A0A0U2RT81	Escherichia_phage	8.1e-88	70.4
WP_000693925.1\|3290418_3290844_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_047083516.1\|3290827_3291103_-	helix-turn-helix transcriptional regulator	A0A0U2S629	Escherichia_phage	2.4e-15	51.2
WP_033812093.1\|3291210_3291711_+	helix-turn-helix transcriptional regulator	A0A0U2QW76	Escherichia_phage	1.4e-16	54.5
WP_033812094.1\|3291728_3291920_+	hypothetical protein	NA	NA	NA	NA
WP_033812095.1\|3291919_3292210_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000380319.1\|3292478_3292631_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_077637644.1\|3292786_3293044_+	hypothetical protein	I6PDF6	Cronobacter_phage	1.4e-09	84.2
WP_024213805.1\|3293124_3293310_-	hypothetical protein	NA	NA	NA	NA
WP_000450222.1\|3293854_3294043_+	cell division inhibitor	NA	NA	NA	NA
WP_086163675.1\|3294039_3294228_+	DUF1482 family protein	NA	NA	NA	NA
WP_088888718.1\|3294320_3296723_+	exonuclease	V5UQJ3	Shigella_phage	3.7e-176	58.6
WP_000273163.1\|3296789_3297041_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_001367167.1\|3297009_3298029_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.6e-86	50.3
WP_022581964.1\|3298370_3298700_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_088888702.1\|3298967_3300881_-\|tail	phage tail protein	S5MDN9	Escherichia_phage	6.8e-173	97.6
WP_088888703.1\|3301031_3301655_-	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	1.8e-66	59.9
WP_088888704.1\|3301723_3305419_-	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	80.8
WP_131199704.1\|3305664_3306297_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.1e-99	89.5
WP_088888705.1\|3306242_3306986_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	4.3e-147	96.8
WP_001484085.1\|3306996_3307695_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	6.8e-131	97.4
WP_000847280.1\|3307694_3308024_-\|tail	phage tail protein	S5MW28	Escherichia_phage	1.2e-58	99.1
WP_000532075.1\|3310711_3311020_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	3.0e-54	99.0
WP_000479054.1\|3311046_3311469_-\|tail	phage minor tail protein G	S5MQJ3	Escherichia_phage	5.1e-73	100.0
WP_088888707.1\|3311484_3312234_-\|tail	phage tail protein	S5M7Q5	Escherichia_phage	9.9e-136	98.4
WP_157787304.1\|3316516_3316750_-\|portal	phage portal protein	S5MW34	Escherichia_phage	2.8e-28	89.3
WP_095413461.1\|3319415_3319739_-	hypothetical protein	S5MDQ1	Escherichia_phage	7.4e-48	100.0
WP_000682704.1\|3321784_3322183_-	hypothetical protein	S5MW30	Escherichia_phage	2.7e-71	100.0
WP_000974964.1\|3322192_3322819_-	hypothetical protein	S5MBY4	Escherichia_phage	7.8e-102	100.0
WP_001281347.1\|3322821_3323103_-	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	1.3e-45	98.9
WP_088888708.1\|3323095_3323422_-	DUF2190 family protein	S5MQJ5	Escherichia_phage	1.8e-49	99.1
WP_157787306.1\|3323509_3325489_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.7
WP_000974564.1\|3325478_3326981_-\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
WP_000102415.1\|3326980_3327193_-	hypothetical protein	S5MBY8	Escherichia_phage	3.0e-29	98.6
WP_088888709.1\|3327189_3329313_-\|terminase	phage terminase large subunit family protein	S5MDQ1	Escherichia_phage	0.0e+00	99.9
WP_016236020.1\|3329309_3329786_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	1.3e-80	96.8
WP_012816791.1\|3330299_3330485_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001092875.1\|3331003_3331537_-	lysozyme	Q08J98	Stx2-converting_phage	1.1e-99	95.5
WP_001041949.1\|3332048_3332840_-	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	5.7e-33	85.5
WP_000284506.1\|3332843_3333059_-\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_088888722.1\|3333429_3335403_-	DUF1737 domain-containing protein	S5MDQ7	Escherichia_phage	2.6e-300	78.2
WP_000216624.1\|3335907_3336072_-	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	7.4e-12	81.1
WP_001380362.1\|3336068_3336500_-	tellurite resistance protein	H6WZJ6	Escherichia_phage	1.6e-66	96.5
WP_000483502.1\|3336961_3338020_-	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	2.0e-206	98.9
WP_000917735.1\|3338170_3338368_-	hypothetical protein	S5MQK8	Escherichia_phage	1.8e-28	98.5
WP_001204806.1\|3338583_3338964_-	antitermination protein Q	S5M7R9	Escherichia_phage	4.9e-67	100.0
WP_088888723.1\|3338981_3340031_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.4e-116	58.5
WP_088888715.1\|3340032_3340305_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.0e-10	50.8
WP_001398985.1\|3340471_3340684_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.4e-16	67.1
WP_028985605.1\|3340917_3341433_-	hypothetical protein	A0A076GCN9	Escherichia_phage	1.2e-36	77.6
WP_001224672.1\|3341598_3341781_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	2.0e-26	96.7
WP_157787302.1\|3341873_3342272_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.4e-56	95.8
WP_001369935.1\|3342207_3342534_-	hypothetical protein	Q8VNQ2	Enterobacteria_phage	2.0e-24	88.5
WP_001289674.1\|3342534_3342846_-	hypothetical protein	A0A222YY67	Escherichia_phage	1.1e-48	83.5
WP_001376361.1\|3342832_3343138_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	2.9e-49	93.1
WP_087614068.1\|3343134_3343416_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	7.9e-30	73.6
WP_088888724.1\|3343448_3344165_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.1e-72	63.0
WP_033883297.1\|3344198_3344621_-	replication protein	A0A0U2JGJ0	Escherichia_phage	7.4e-72	89.3
WP_033882677.1\|3344652_3345663_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	3.7e-170	88.5
WP_000693933.1\|3345749_3346187_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.0e-28	54.4
WP_000391952.1\|3346170_3346452_-	hypothetical protein	K7PHA1	Enterobacteria_phage	8.5e-24	72.6
WP_000362156.1\|3346553_3346973_+	hypothetical protein	K7PK07	Enterobacteria_phage	1.4e-25	66.3
WP_088888725.1\|3347238_3347394_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	2.0e-06	51.1
WP_042343674.1\|3347553_3347772_+	hypothetical protein	NA	NA	NA	NA
WP_122994669.1\|3347775_3347901_-	hypothetical protein	NA	NA	NA	NA
WP_000450222.1\|3348329_3348518_+	cell division inhibitor	NA	NA	NA	NA
WP_086163675.1\|3348514_3348703_+	DUF1482 family protein	NA	NA	NA	NA
WP_088888727.1\|3348795_3351234_+	exonuclease	V5UQJ3	Shigella_phage	1.3e-107	44.4
WP_000273163.1\|3351300_3351552_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_001367167.1\|3351520_3352540_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.6e-86	50.3
WP_000375136.1\|3352947_3353607_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	55.3
3352682:3352743	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3366066 : 3423714

Shigella_phage(57.89%)

integrase,transposase,protease,head,tail,plate

attL 3364116:3364132|attR 3417998:3418014

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3364116:3364132	attL	NA	NA	NA	NA
WP_000156526.1\|3366066_3367827_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_001386684.1\|3367895_3368414_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000828648.1\|3368483_3368651_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759123.1\|3368906_3369470_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000445533.1\|3369466_3371107_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333176.1\|3371111_3372365_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053089.1\|3372494_3374402_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.4e-53	29.7
WP_001086517.1\|3374412_3376521_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000258204.1\|3376764_3377874_+	6-N-hydroxylaminopurine resistance protein YcbX	NA	NA	NA	NA
WP_001295353.1\|3377870_3378413_-	cell division protein ZapC	NA	NA	NA	NA
WP_001295352.1\|3378586_3379597_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001307090.1\|3379707_3380418_-	fimbrial chaperone	NA	NA	NA	NA
WP_000919489.1\|3380410_3380926_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_000730614.1\|3380933_3381476_-	fimbrial protein	NA	NA	NA	NA
WP_001165657.1\|3381487_3382558_-	fimbrial protein	NA	NA	NA	NA
WP_000077538.1\|3384849_3385380_-	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	1.1e-35	61.7
WP_001310454.1\|3385569_3385818_+	transcriptional regulator	A0A2D1GNH1	Pseudomonas_phage	1.3e-28	73.2
WP_000289277.1\|3385819_3387910_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	3.0e-166	47.4
WP_000129797.1\|3387981_3388914_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	4.8e-71	49.0
WP_000560046.1\|3388916_3389138_+	hypothetical protein	NA	NA	NA	NA
WP_001057199.1\|3389150_3389405_+	hypothetical protein	NA	NA	NA	NA
WP_000827936.1\|3389406_3389688_+	hypothetical protein	I6WB15	Burkholderia_virus	2.8e-11	47.4
WP_000049398.1\|3389684_3389987_+	hypothetical protein	NA	NA	NA	NA
WP_000049308.1\|3389961_3390255_+	hypothetical protein	NA	NA	NA	NA
WP_001129560.1\|3390266_3390797_+	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	4.2e-48	56.6
WP_000323221.1\|3390894_3391437_+	hypothetical protein	A0A0C4UQZ6	Shigella_phage	2.9e-28	40.0
WP_000564282.1\|3391440_3391974_+	hypothetical protein	A0A0C4UQU2	Shigella_phage	1.8e-67	67.8
WP_000465557.1\|3391973_3392489_+	hypothetical protein	C9DGM0	Escherichia_phage	1.3e-46	54.2
WP_000977064.1\|3392492_3393044_+	SANT/Myb domain-containing protein	NA	NA	NA	NA
WP_000595949.1\|3393040_3393226_+	hypothetical protein	NA	NA	NA	NA
WP_000021236.1\|3393264_3393597_+	hypothetical protein	NA	NA	NA	NA
WP_001086885.1\|3393589_3393787_+	hypothetical protein	A0A291AXE7	Shigella_phage	5.6e-06	36.2
WP_000378478.1\|3393776_3394073_+	hypothetical protein	NA	NA	NA	NA
WP_001214355.1\|3394069_3394579_+	gp16 family protein	A0A0C4UQU3	Shigella_phage	2.8e-25	46.8
WP_000852373.1\|3394649_3395072_+	transcriptional regulator	NA	NA	NA	NA
WP_001125312.1\|3395143_3395644_+	lysozyme	A0A2H4J3P8	uncultured_Caudovirales_phage	6.6e-27	42.0
WP_001388992.1\|3395678_3396107_+	hypothetical protein	NA	NA	NA	NA
WP_048657292.1\|3396036_3396309_+	hypothetical protein	NA	NA	NA	NA
WP_000342741.1\|3396319_3396547_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_000270160.1\|3396527_3396839_+	DUF2730 family protein	NA	NA	NA	NA
WP_001279080.1\|3396831_3397122_+	hypothetical protein	A0A0C4UR00	Shigella_phage	2.1e-25	63.2
WP_088888728.1\|3397124_3397706_+	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	3.2e-49	57.0
WP_000255659.1\|3397716_3397965_+	hypothetical protein	NA	NA	NA	NA
WP_001030238.1\|3397964_3399629_+	hypothetical protein	A0A0C4UR29	Shigella_phage	2.4e-230	73.2
WP_000532599.1\|3399628_3401218_+	DUF935 domain-containing protein	A0A0C4UQR8	Shigella_phage	8.5e-169	58.1
WP_000046202.1\|3401201_3402533_+\|head	phage head morphogenesis protein	A0A0C4UQY9	Shigella_phage	6.4e-154	58.5
WP_000094810.1\|3402654_3403128_+	phage virion morphogenesis protein	A0A0C4UR01	Shigella_phage	1.7e-37	53.9
WP_000850814.1\|3403305_3404430_+\|protease	protease	A0A0C4UQU6	Shigella_phage	5.0e-75	46.5
WP_001142988.1\|3404429_3405377_+\|head	head protein	A0A0C4UQR9	Shigella_phage	2.7e-122	66.9
WP_001002063.1\|3405420_3405780_+	hypothetical protein	NA	NA	NA	NA
WP_001104960.1\|3405776_3406196_+	gp436 family protein	A0A0C4UR02	Shigella_phage	6.1e-34	54.3
WP_000627436.1\|3406192_3406756_+	DUF1834 family protein	A0A0C4UQU7	Shigella_phage	4.8e-42	47.1
WP_000207437.1\|3406759_3407038_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_000606778.1\|3407037_3408540_+\|tail	tail protein	A0A0C4UQS0	Shigella_phage	2.7e-132	51.1
WP_000015469.1\|3408548_3408914_+\|tail	phage tail protein	NA	NA	NA	NA
WP_000213225.1\|3408928_3409405_+	hypothetical protein	A0A0C4UR03	Shigella_phage	1.0e-21	50.8
WP_000113523.1\|3409531_3411607_+	tape measure protein	A0A0C4UQU8	Shigella_phage	3.7e-71	37.7
WP_000146118.1\|3411593_3412943_+	DMT family permease	C9DGQ2	Escherichia_phage	5.9e-54	33.1
WP_000098806.1\|3412926_3414051_+\|tail	tail protein	C9DGQ3	Escherichia_phage	1.7e-94	47.7
WP_072105406.1\|3414040_3414655_+\|plate	phage baseplate assembly protein V	A0A0C4UQZ3	Shigella_phage	2.5e-52	51.3
WP_000763299.1\|3414647_3415085_+	hypothetical protein	A0A0C4UR04	Shigella_phage	7.7e-40	56.9
WP_001146839.1\|3415084_3416167_+\|plate	baseplate J/gp47 family protein	A0A0C4UQU9	Shigella_phage	8.2e-99	53.2
WP_000301578.1\|3416157_3416718_+	YmfQ family protein	C9DGQ7	Escherichia_phage	3.9e-44	49.1
WP_032184567.1\|3416717_3417608_+	hypothetical protein	C9DGQ8	Escherichia_phage	1.3e-28	39.9
WP_000421093.1\|3417659_3418181_+\|tail	tail protein	A0A0U2QV64	Escherichia_phage	8.6e-46	49.1
3417998:3418014	attR	NA	NA	NA	NA
WP_000904914.1\|3418641_3419214_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.3e-74	76.9
WP_001284084.1\|3419299_3421354_+	sialate O-acetylesterase	S5MDQ7	Escherichia_phage	1.3e-233	64.9
WP_000143467.1\|3421498_3421681_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-09	54.4
WP_001114101.1\|3421716_3421971_+	DUF826 domain-containing protein	NA	NA	NA	NA
WP_001388991.1\|3422046_3422247_+	hypothetical protein	NA	NA	NA	NA
WP_001388990.1\|3422822_3423023_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000528247.1\|3422976_3423714_+	hypothetical protein	A0A0C4UQZ7	Shigella_phage	3.7e-103	79.0

DBSCAN-SWA_10

4174216 : 4236542

Cronobacter_phage(12.5%)

tRNA,protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000611748.1\|4174216_4174630_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000393853.1\|4174633_4176484_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000348793.1\|4176447_4177530_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001113725.1\|4177554_4178835_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001080149.1\|4178831_4179356_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000246421.1\|4179358_4180690_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_000343303.1\|4180694_4181456_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000614396.1\|4181464_4184224_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	9.4e-83	30.6
WP_000088873.1\|4184220_4184964_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_001240544.1\|4184968_4186384_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_122987046.1\|4186492_4189927_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001087741.1\|4189937_4191290_+	membrane protein	NA	NA	NA	NA
WP_001284200.1\|4191313_4191796_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000908057.1\|4191839_4192754_+	hypothetical protein	NA	NA	NA	NA
WP_001236649.1\|4192763_4193243_+	hypothetical protein	NA	NA	NA	NA
WP_001086142.1\|4193379_4194165_-	aminopeptidase	NA	NA	NA	NA
WP_001297205.1\|4194700_4195432_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
WP_000917888.1\|4195496_4195964_+	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001298887.1\|4195960_4196683_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001052751.1\|4196716_4197472_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000644685.1\|4197543_4198902_+	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_000211710.1\|4198949_4199720_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001230983.1\|4199797_4200598_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000648601.1\|4200838_4201753_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000997043.1\|4201749_4202553_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	3.2e-39	36.6
WP_001140174.1\|4208450_4209023_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000593994.1\|4209210_4210242_+	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001294600.1\|4210234_4210888_+	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000874224.1\|4210927_4211743_+	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001202329.1\|4211860_4212265_+	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000094011.1\|4212261_4212969_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001260716.1\|4213080_4214799_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000399648.1\|4215878_4216859_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000239154.1\|4217108_4217819_-	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_000635545.1\|4217832_4218255_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_001185290.1\|4218251_4218797_-	YaeQ family protein	NA	NA	NA	NA
WP_000417058.1\|4218962_4219163_+	YaeP family protein	NA	NA	NA	NA
WP_000062312.1\|4219149_4219410_+	Rho-binding antiterminator	NA	NA	NA	NA
WP_000176578.1\|4219458_4220757_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000901098.1\|4220821_4221211_-	VOC family protein	NA	NA	NA	NA
WP_001020973.1\|4221267_4223409_-	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000055741.1\|4223507_4224467_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001294757.1\|4224479_4227962_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000569430.1\|4227998_4228595_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
WP_000139667.1\|4228591_4229740_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000565966.1\|4229739_4230528_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|4230531_4230987_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_001139279.1\|4231091_4232117_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000758956.1\|4232120_4232606_-	molecular chaperone Skp	NA	NA	NA	NA
WP_001240896.1\|4232727_4235160_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_001346129.1\|4235189_4236542_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023552

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP016828

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection