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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016596 Bacillus cereus strain K8 plasmid pBCM301, complete sequence 0 crisprs csa3,cas14j 0 0 25 0
NZ_CP016595 Bacillus cereus strain K8, complete sequence 5 crisprs cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh 1 3 6 0
NZ_CP016597 Bacillus cereus strain K8 plasmid pBCK802, complete sequence 0 crisprs NA 0 0 2 0

Results visualization

1. NZ_CP016595
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016595_1 626765-626840 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016595_2 1072671-1072764 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016595_3 4610281-4610820 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016595_4 4851423-4851541 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016595_5 5115689-5115822 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP016595_3 3.2|4610371|18|NZ_CP016595|CRT 4610371-4610388 18 NZ_CP016595.1 3190197-3190214 1 0.944
NZ_CP016595_3 3.2|4610371|18|NZ_CP016595|CRT 4610371-4610388 18 NZ_CP016595.1 4611715-4611732 1 0.944

1. spacer 3.2|4610371|18|NZ_CP016595|CRT matches to position: 3190197-3190214, mismatch: 1, identity: 0.944

tgggccttggattccttg	CRISPR spacer
tgggccttgaattccttg	Protospacer
*********.********

2. spacer 3.2|4610371|18|NZ_CP016595|CRT matches to position: 4611715-4611732, mismatch: 1, identity: 0.944

tgggccttggattccttg	CRISPR spacer
tgggccttgaattccttg	Protospacer
*********.********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016595_3 3.7|4610641|27|NZ_CP016595|CRT 4610641-4610667 27 MN694423 Marine virus AFVG_250M1001, complete genome 26259-26285 2 0.926
NZ_CP016595_3 3.4|4610461|36|NZ_CP016595|CRT 4610461-4610496 36 GU936714 Synechococcus phage S-CBS2, complete genome 39491-39526 3 0.917
NZ_CP016595_5 5.1|5115712|31|NZ_CP016595|CRISPRCasFinder 5115712-5115742 31 JX238501 Bacillus phage phiAGATE, complete genome 124559-124589 8 0.742
NZ_CP016595_3 3.4|4610461|36|NZ_CP016595|CRT 4610461-4610496 36 NC_048169 Gordonia phage BrutonGaster, complete genome 17045-17080 9 0.75

1. spacer 3.7|4610641|27|NZ_CP016595|CRT matches to MN694423 (Marine virus AFVG_250M1001, complete genome) position: , mismatch: 2, identity: 0.926

tgggccttgtgccccggttgcccctgt	CRISPR spacer
tgggccttgcgccccagttgcccctgt	Protospacer
*********.*****.***********

2. spacer 3.4|4610461|36|NZ_CP016595|CRT matches to GU936714 (Synechococcus phage S-CBS2, complete genome) position: , mismatch: 3, identity: 0.917

cgggccttgaattccttgcgggccttggattccttg	CRISPR spacer
ctcgccttgaattccttgcgggccttgaattccttg	Protospacer
*  ************************.********

3. spacer 5.1|5115712|31|NZ_CP016595|CRISPRCasFinder matches to JX238501 (Bacillus phage phiAGATE, complete genome) position: , mismatch: 8, identity: 0.742

ttcttcttttttgtcactagttgaaccgctt	CRISPR spacer
ctaaccttttttgccactagttaaaccgccc	Protospacer
.*  .********.********.******..

4. spacer 3.4|4610461|36|NZ_CP016595|CRT matches to NC_048169 (Gordonia phage BrutonGaster, complete genome) position: , mismatch: 9, identity: 0.75

cgggccttgaattccttgcgggccttggattccttg	CRISPR spacer
agggccttgagttccttgcggaccttggcgatgtcg	Protospacer
 *********.**********.******   . *.*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 252778 : 260726 6 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_2 305305 : 313681 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 1815568 : 1823716 7 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_4 1996333 : 2003220 8 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_5 2433884 : 2506654 76 Bacillus_phage(62.5%) protease,head,portal,transposase,integrase,bacteriocin,terminase,tail,capsid attL 2433627:2433661|attR 2510883:2510917
DBSCAN-SWA_6 4428403 : 4436088 9 Staphylococcus_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP016596
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 7686 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_2 15975 : 16926 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_3 27904 : 33499 4 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_4 39842 : 41847 2 Indivirus(50.0%) NA NA
DBSCAN-SWA_5 54016 : 57322 4 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_6 64059 : 94398 11 Tupanvirus(57.14%) NA NA
DBSCAN-SWA_7 103524 : 119285 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_8 122864 : 130463 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_9 139674 : 141102 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_10 144720 : 146097 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_11 157010 : 157226 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_12 160718 : 162359 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_13 173017 : 174433 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_14 185470 : 190942 5 Bacillus_phage(75.0%) NA NA
DBSCAN-SWA_15 210097 : 210376 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_16 213497 : 216155 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_17 222944 : 224072 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_18 242654 : 244574 2 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_19 265116 : 266639 2 Enterococcus_phage(50.0%) transposase NA
DBSCAN-SWA_20 273633 : 283318 5 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_21 286634 : 290349 4 Brevibacillus_phage(33.33%) NA NA
DBSCAN-SWA_22 296608 : 301816 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_23 307142 : 307847 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_24 312499 : 314101 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_25 317161 : 318112 1 Salmonella_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP016597
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 13140 : 45861 38 Bacillus_phage(71.43%) head,terminase,holin,portal,tail NA
DBSCAN-SWA_2 48865 : 59146 15 Bacillus_phage(61.54%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage