CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	3 crisprs	RT,csa3	3	1
NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	1 crisprs	DEDDh,RT	1	2
NZ_CP019584	Sinorhizobium meliloti strain CCMM B554 (FSM-MA), complete genome	3 crisprs	WYL,RT,cas3,csa3	0	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019586_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019586_1

1053878-1053980

Orphan

Consensus_repeat	Method
TCGGCGGCGGCGGCGGTGCGGGCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019586_1

>merge|NZ_CP019586|1|1053878-1053980|CRISPRCasFinder
TCGGCGGCGGCGGCGGTGCGGGCGGCACCTCCACCGCGTCCGGCAGCCAGGCGACGGCCAACATCACCGTCGGTGTCGGCGGCAGCGGCGGTGCGGGCGGCAA

>NZ_CP019586|1|1|1053878-1053980|CRISPRCasFinder
TCGGCGGCGGCGGCGGTGCGGGCGGCA	CCTCCACCGCGTCCGGCAGCCAGGCGACGGCCAACATCACCGTCGGTG
TCGGCGGCAGCGGCGGTGCGGGCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019586.1\|WP_014527144.1\|1037110_1038568_+\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP019586.1\|WP_027988553.1\|1035839_1037114_+\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NZ_CP019586.1\|WP_010975842.1\|1068788_1069412_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP019586.1\|WP_014527141.1\|1041554_1043597_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP019586.1\|WP_088896515.1\|1043781_1047120_+\|hemolysin	unknown	unknown	gnl\|CDD\|225483
NZ_CP019586.1\|WP_014527138.1\|1048502_1049654_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP019586.1\|WP_027988559.1\|1065592_1067818_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP019586.1\|WP_010975829.1\|1047245_1047644_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_080659400.1\|1059222_1060146_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_088896516.1\|1067814_1068792_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP019586.1\|WP_027988558.1\|1061979_1062489_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP019586.1\|WP_074853266.1\|1057956_1059198_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP019586.1\|WP_014527139.1\|1047732_1048515_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP019586.1\|WP_074853281.1\|1049744_1050137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_027988554.1\|1039273_1040296_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP019586.1\|WP_014527142.1\|1040385_1041549_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP019586.1\|WP_017276443.1\|1063730_1065512_+\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP019586.1\|WP_088218251.1\|1060340_1061675_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP019586.1\|WP_080676568.1\|1062691_1063234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_010975834.1\|1056959_1057877_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450

Protein	Function_ID	Function_description	E-value
NZ_CP019586.1\|WP_014527144.1\|1037110_1038568_+\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP019586.1\|WP_027988553.1\|1035839_1037114_+\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	2.74893e-171
NZ_CP019586.1\|WP_010975842.1\|1068788_1069412_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP019586.1\|WP_088896515.1\|1043781_1047120_+\|hemolysin	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.43981e-24
NZ_CP019586.1\|WP_014527138.1\|1048502_1049654_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171
NZ_CP019586.1\|WP_027988559.1\|1065592_1067818_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP019586.1\|WP_074853266.1\|1057956_1059198_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	2.38838e-66
NZ_CP019586.1\|WP_088896516.1\|1067814_1068792_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.45707e-90
NZ_CP019586.1\|WP_027988558.1\|1061979_1062489_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.68647e-16
NZ_CP019586.1\|WP_014527142.1\|1040385_1041549_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019586.1\|WP_014527141.1\|1041554_1043597_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019586.1\|WP_027988554.1\|1039273_1040296_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019586.1\|WP_014527139.1\|1047732_1048515_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP019586.1\|WP_017276443.1\|1063730_1065512_+\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	4.92678e-171
NZ_CP019586.1\|WP_010975834.1\|1056959_1057877_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP019586.1\|WP_088218251.1\|1060340_1061675_-\|ISNCY-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	7.08126e-29

>NZ_CP019586.1|WP_074853281.1|1049744_1050137_+|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRARRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP019586.1|WP_014527138.1|1048502_1049654_-|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NZ_CP019586.1|WP_014527139.1|1047732_1048515_-|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP019586.1|WP_010975829.1|1047245_1047644_+|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP019586.1|WP_088896515.1|1043781_1047120_+|hemolysin
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYEGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGAIAAIQYAQLSTNLKLSAADFIII
>NZ_CP019586.1|WP_014527141.1|1041554_1043597_+|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP019586.1|WP_014527142.1|1040385_1041549_+|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP019586.1|WP_027988554.1|1039273_1040296_+|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCFNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP019586.1|WP_014527144.1|1037110_1038568_+|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP019586.1|WP_027988553.1|1035839_1037114_+|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARIAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NZ_CP019586.1|WP_010975834.1|1056959_1057877_+|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP019586.1|WP_074853266.1|1057956_1059198_+|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLASFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP019586.1|WP_080659400.1|1059222_1060146_+|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPERPQRQWHPSSRLRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP019586.1|WP_088218251.1|1060340_1061675_-|ISNCY-family-transposase
MRQERTVQASIFDLFAEHEIGRELKAMSEWLDEHGDLLGLVARDLRRHGLRQTGREGLPAEAVLRCALLKQHRQLSYQELAFHLEDSASFRAFARLPWGWNPKKSVLHKTISAIRAQTFEEINGVLLASARQEKLESGKVVRVDSTVTAALIHEPSDSSLLWDAVRVTVRLLQQAEALGSAIPWHDHRRAAKKRARAIEYIRGRPKRIKHYRELLKITRTTLSYLQQASEQLPLTAGPAGELWQAQLRHYRPLIERIIAQTERRVLAGDPVPAGEKLVSLFEPHADIIVKGSRDVDYGHKLNLTTGRSGLILDLVIEAGNPTDSERLLPMLERHIAFYGEPPRQAAADGGYASRENLSGAKARGIRDMAFHKKRGLSIEDMVSSRWVYRKLRNFRAGIEAGISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYNLALFARLRPT
>NZ_CP019586.1|WP_027988558.1|1061979_1062489_+|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPVGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP019586.1|WP_080676568.1|1062691_1063234_+|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVVDDHCRVNQMIKCLRKEQNRLDVP
>NZ_CP019586.1|WP_017276443.1|1063730_1065512_+|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIASVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFGASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISGEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVCQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLDPVEAVPPGGSA
>NZ_CP019586.1|WP_027988559.1|1065592_1067818_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARQPQVDAHAGERVIPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWNGDRLTLWSKSQFVVNEQAEIAAIFGLPPENVQVNCPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP019586.1|WP_088896516.1|1067814_1068792_-|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVCLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP019586.1|WP_010975842.1|1068788_1069412_-|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT

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Crispr_ID: NZ_CP019586_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019586_2

1054073-1054154

Orphan

Consensus_repeat	Method
TCGGCGGCGGCGGCGGTGCGGGCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019586_2

>merge|NZ_CP019586|2|1054073-1054154|CRISPRCasFinder
TCGGCGGCGGTGGCGGGCAGGGCGGCGACGGTTCCGACGAGGCGGCGGGCAGGATCACCGTCGGGGGCGGCTTCGGCGGCAG

>NZ_CP019586|2|2|1054073-1054154|CRISPRCasFinder
TCGGCGGCGGTGGCGGGCAGGGCGGCG	ACGGTTCCGACGAGGCGGCGGGCAGGA
TCACCGTCGGGGGCGGCTTCGGCGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019586.1\|WP_014527144.1\|1037110_1038568_+\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP019586.1\|WP_027988553.1\|1035839_1037114_+\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NZ_CP019586.1\|WP_010975842.1\|1068788_1069412_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP019586.1\|WP_014527141.1\|1041554_1043597_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP019586.1\|WP_088896515.1\|1043781_1047120_+\|hemolysin	unknown	unknown	gnl\|CDD\|225483
NZ_CP019586.1\|WP_014527138.1\|1048502_1049654_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP019586.1\|WP_027988559.1\|1065592_1067818_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP019586.1\|WP_010975829.1\|1047245_1047644_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_080659400.1\|1059222_1060146_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_088896516.1\|1067814_1068792_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP019586.1\|WP_027988558.1\|1061979_1062489_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP019586.1\|WP_074853266.1\|1057956_1059198_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP019586.1\|WP_014527139.1\|1047732_1048515_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP019586.1\|WP_074853281.1\|1049744_1050137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_027988554.1\|1039273_1040296_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP019586.1\|WP_014527142.1\|1040385_1041549_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP019586.1\|WP_017276443.1\|1063730_1065512_+\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP019586.1\|WP_088218251.1\|1060340_1061675_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP019586.1\|WP_080676568.1\|1062691_1063234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_010975834.1\|1056959_1057877_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450

Protein	Function_ID	Function_description	E-value
NZ_CP019586.1\|WP_014527144.1\|1037110_1038568_+\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP019586.1\|WP_027988553.1\|1035839_1037114_+\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	2.74893e-171
NZ_CP019586.1\|WP_010975842.1\|1068788_1069412_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP019586.1\|WP_088896515.1\|1043781_1047120_+\|hemolysin	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.43981e-24
NZ_CP019586.1\|WP_014527138.1\|1048502_1049654_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171
NZ_CP019586.1\|WP_027988559.1\|1065592_1067818_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP019586.1\|WP_074853266.1\|1057956_1059198_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	2.38838e-66
NZ_CP019586.1\|WP_088896516.1\|1067814_1068792_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.45707e-90
NZ_CP019586.1\|WP_027988558.1\|1061979_1062489_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.68647e-16
NZ_CP019586.1\|WP_014527142.1\|1040385_1041549_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019586.1\|WP_014527141.1\|1041554_1043597_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019586.1\|WP_027988554.1\|1039273_1040296_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019586.1\|WP_014527139.1\|1047732_1048515_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP019586.1\|WP_017276443.1\|1063730_1065512_+\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	4.92678e-171
NZ_CP019586.1\|WP_010975834.1\|1056959_1057877_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP019586.1\|WP_088218251.1\|1060340_1061675_-\|ISNCY-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	7.08126e-29

>NZ_CP019586.1|WP_074853281.1|1049744_1050137_+|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRARRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP019586.1|WP_014527138.1|1048502_1049654_-|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NZ_CP019586.1|WP_014527139.1|1047732_1048515_-|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP019586.1|WP_010975829.1|1047245_1047644_+|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP019586.1|WP_088896515.1|1043781_1047120_+|hemolysin
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYEGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGAIAAIQYAQLSTNLKLSAADFIII
>NZ_CP019586.1|WP_014527141.1|1041554_1043597_+|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP019586.1|WP_014527142.1|1040385_1041549_+|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP019586.1|WP_027988554.1|1039273_1040296_+|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCFNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP019586.1|WP_014527144.1|1037110_1038568_+|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP019586.1|WP_027988553.1|1035839_1037114_+|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARIAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NZ_CP019586.1|WP_010975834.1|1056959_1057877_+|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP019586.1|WP_074853266.1|1057956_1059198_+|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLASFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP019586.1|WP_080659400.1|1059222_1060146_+|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPERPQRQWHPSSRLRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP019586.1|WP_088218251.1|1060340_1061675_-|ISNCY-family-transposase
MRQERTVQASIFDLFAEHEIGRELKAMSEWLDEHGDLLGLVARDLRRHGLRQTGREGLPAEAVLRCALLKQHRQLSYQELAFHLEDSASFRAFARLPWGWNPKKSVLHKTISAIRAQTFEEINGVLLASARQEKLESGKVVRVDSTVTAALIHEPSDSSLLWDAVRVTVRLLQQAEALGSAIPWHDHRRAAKKRARAIEYIRGRPKRIKHYRELLKITRTTLSYLQQASEQLPLTAGPAGELWQAQLRHYRPLIERIIAQTERRVLAGDPVPAGEKLVSLFEPHADIIVKGSRDVDYGHKLNLTTGRSGLILDLVIEAGNPTDSERLLPMLERHIAFYGEPPRQAAADGGYASRENLSGAKARGIRDMAFHKKRGLSIEDMVSSRWVYRKLRNFRAGIEAGISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYNLALFARLRPT
>NZ_CP019586.1|WP_027988558.1|1061979_1062489_+|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPVGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP019586.1|WP_080676568.1|1062691_1063234_+|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVVDDHCRVNQMIKCLRKEQNRLDVP
>NZ_CP019586.1|WP_017276443.1|1063730_1065512_+|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIASVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFGASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISGEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVCQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLDPVEAVPPGGSA
>NZ_CP019586.1|WP_027988559.1|1065592_1067818_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARQPQVDAHAGERVIPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWNGDRLTLWSKSQFVVNEQAEIAAIFGLPPENVQVNCPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP019586.1|WP_088896516.1|1067814_1068792_-|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVCLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP019586.1|WP_010975842.1|1068788_1069412_-|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT

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Crispr_ID: NZ_CP019586_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019586_3

1054253-1054357

Orphan

Consensus_repeat	Method
TCGGCGGCGGCGGCGGTGCGGGCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019586_3

>merge|NZ_CP019586|3|1054253-1054357|CRISPRCasFinder
TCGGCGGCGGCGGCGGCGTCGGCGGCGCCGGAAGCAGCACGGCCGCCGAAAAAGAGTACAGCCACACGATCGATCTCGTCGTCGGCGGCAGCGGCGGTGTCGGCG

>NZ_CP019586|3|3|1054253-1054357|CRISPRCasFinder
TCGGCGGCGGCGGCGGCGTCGGCGGCG	CCGGAAGCAGCACGGCCGCCGAAAAAGAGTACAGCCACACGATCGATCTCG
TCGTCGGCGGCAGCGGCGGTGTCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019586.1\|WP_014527144.1\|1037110_1038568_+\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP019586.1\|WP_027988553.1\|1035839_1037114_+\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NZ_CP019586.1\|WP_010975842.1\|1068788_1069412_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP019586.1\|WP_014527141.1\|1041554_1043597_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP019586.1\|WP_088896515.1\|1043781_1047120_+\|hemolysin	unknown	unknown	gnl\|CDD\|225483
NZ_CP019586.1\|WP_014527138.1\|1048502_1049654_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP019586.1\|WP_027988559.1\|1065592_1067818_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP019586.1\|WP_010975829.1\|1047245_1047644_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_080659400.1\|1059222_1060146_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_088896516.1\|1067814_1068792_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP019586.1\|WP_027988558.1\|1061979_1062489_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP019586.1\|WP_074853266.1\|1057956_1059198_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP019586.1\|WP_014527139.1\|1047732_1048515_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP019586.1\|WP_074853281.1\|1049744_1050137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_027988554.1\|1039273_1040296_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP019586.1\|WP_014527142.1\|1040385_1041549_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP019586.1\|WP_017276443.1\|1063730_1065512_+\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP019586.1\|WP_088218251.1\|1060340_1061675_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP019586.1\|WP_080676568.1\|1062691_1063234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019586.1\|WP_010975834.1\|1056959_1057877_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450

Protein	Function_ID	Function_description	E-value
NZ_CP019586.1\|WP_014527144.1\|1037110_1038568_+\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP019586.1\|WP_027988553.1\|1035839_1037114_+\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	2.74893e-171
NZ_CP019586.1\|WP_010975842.1\|1068788_1069412_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP019586.1\|WP_088896515.1\|1043781_1047120_+\|hemolysin	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.43981e-24
NZ_CP019586.1\|WP_014527138.1\|1048502_1049654_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171
NZ_CP019586.1\|WP_027988559.1\|1065592_1067818_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP019586.1\|WP_074853266.1\|1057956_1059198_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	2.38838e-66
NZ_CP019586.1\|WP_088896516.1\|1067814_1068792_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.45707e-90
NZ_CP019586.1\|WP_027988558.1\|1061979_1062489_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.68647e-16
NZ_CP019586.1\|WP_014527142.1\|1040385_1041549_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019586.1\|WP_014527141.1\|1041554_1043597_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019586.1\|WP_027988554.1\|1039273_1040296_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019586.1\|WP_014527139.1\|1047732_1048515_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP019586.1\|WP_017276443.1\|1063730_1065512_+\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	4.92678e-171
NZ_CP019586.1\|WP_010975834.1\|1056959_1057877_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP019586.1\|WP_088218251.1\|1060340_1061675_-\|ISNCY-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	7.08126e-29

>NZ_CP019586.1|WP_074853281.1|1049744_1050137_+|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRARRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP019586.1|WP_014527138.1|1048502_1049654_-|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NZ_CP019586.1|WP_014527139.1|1047732_1048515_-|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP019586.1|WP_010975829.1|1047245_1047644_+|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP019586.1|WP_088896515.1|1043781_1047120_+|hemolysin
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYEGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGAIAAIQYAQLSTNLKLSAADFIII
>NZ_CP019586.1|WP_014527141.1|1041554_1043597_+|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP019586.1|WP_014527142.1|1040385_1041549_+|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP019586.1|WP_027988554.1|1039273_1040296_+|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCFNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP019586.1|WP_014527144.1|1037110_1038568_+|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP019586.1|WP_027988553.1|1035839_1037114_+|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARIAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NZ_CP019586.1|WP_010975834.1|1056959_1057877_+|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP019586.1|WP_074853266.1|1057956_1059198_+|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLASFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP019586.1|WP_080659400.1|1059222_1060146_+|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPERPQRQWHPSSRLRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP019586.1|WP_088218251.1|1060340_1061675_-|ISNCY-family-transposase
MRQERTVQASIFDLFAEHEIGRELKAMSEWLDEHGDLLGLVARDLRRHGLRQTGREGLPAEAVLRCALLKQHRQLSYQELAFHLEDSASFRAFARLPWGWNPKKSVLHKTISAIRAQTFEEINGVLLASARQEKLESGKVVRVDSTVTAALIHEPSDSSLLWDAVRVTVRLLQQAEALGSAIPWHDHRRAAKKRARAIEYIRGRPKRIKHYRELLKITRTTLSYLQQASEQLPLTAGPAGELWQAQLRHYRPLIERIIAQTERRVLAGDPVPAGEKLVSLFEPHADIIVKGSRDVDYGHKLNLTTGRSGLILDLVIEAGNPTDSERLLPMLERHIAFYGEPPRQAAADGGYASRENLSGAKARGIRDMAFHKKRGLSIEDMVSSRWVYRKLRNFRAGIEAGISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYNLALFARLRPT
>NZ_CP019586.1|WP_027988558.1|1061979_1062489_+|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPVGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP019586.1|WP_080676568.1|1062691_1063234_+|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVVDDHCRVNQMIKCLRKEQNRLDVP
>NZ_CP019586.1|WP_017276443.1|1063730_1065512_+|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIASVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFGASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISGEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVCQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLDPVEAVPPGGSA
>NZ_CP019586.1|WP_027988559.1|1065592_1067818_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARQPQVDAHAGERVIPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWNGDRLTLWSKSQFVVNEQAEIAAIFGLPPENVQVNCPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP019586.1|WP_088896516.1|1067814_1068792_-|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVCLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP019586.1|WP_010975842.1|1068788_1069412_-|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651661-651708	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085079-1085126	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1053905-1053952	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636655-636702	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151301-1151348	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233702-233749	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644720-644767	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634529-634576	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	655818-655865	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302457-1302504	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895953-896000	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772699-772746	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558706-558753	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292156-292203	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423320-1423367	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373071-373118	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795261-795308	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658334-658381	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225658-1225705	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998341-998388	0	1.0
NZ_CP019586_1	1.1\|1053905\|48\|NZ_CP019586\|CRISPRCasFinder	1053905-1053952	48	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085084-1085131	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085274-1085300	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054100-1054126	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151496-1151522	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656013-656039	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772894-772920	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292351-292377	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373266-373292	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225853-1225879	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998536-998562	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085279-1085305	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651487-651513	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636481-636507	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233528-233554	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644546-644572	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634355-634381	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302283-1302309	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895779-895805	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558532-558558	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423146-1423172	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795087-795113	0	1.0
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658160-658186	0	1.0
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054280-1054330	0	1.0
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656190-656240	0	1.0
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085454-1085504	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151676-1151726	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	773074-773124	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292531-292581	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373446-373496	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1226033-1226083	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998716-998766	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085459-1085509	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651283-651333	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636277-636327	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233324-233374	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644342-644392	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634151-634201	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302079-1302129	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895575-895625	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558328-558378	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1422942-1422992	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	794883-794933	1	0.98
NZ_CP019586_3	3.1\|1054280\|51\|NZ_CP019586\|CRISPRCasFinder	1054280-1054330	51	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	657956-658006	1	0.98
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	778651-778677	5	0.815
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	405901-405927	5	0.815
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP049043	Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_6, complete sequence	43383-43409	5	0.815
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	MN585980	Microbacterium phage Gina, complete genome	24050-24076	5	0.815
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	MN586059	Microbacterium phage Teamocil, complete genome	24149-24175	5	0.815
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	341978-342004	6	0.778
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	339070-339096	6	0.778
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	345316-345342	6	0.778
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	353491-353517	6	0.778
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	339070-339096	6	0.778
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	562461-562487	6	0.778
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	MK279840	Mycobacterium phage JacoRen57, complete genome	26434-26460	7	0.741
NZ_CP019586_2	2.1\|1054100\|27\|NZ_CP019586\|CRISPRCasFinder	1054100-1054126	27	NZ_CP015090	Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence	75369-75395	7	0.741

1. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

2. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

3. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

4. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

5. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

6. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

7. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

8. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

9. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

10. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

11. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

12. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

13. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

14. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

15. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

16. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

17. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

18. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

19. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

20. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

21. spacer 1.1|1053905|48|NZ_CP019586|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

22. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

23. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

24. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

25. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

26. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

27. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

28. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

29. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

30. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

31. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

32. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

33. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

34. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

35. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

36. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

37. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

38. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

39. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

40. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

41. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

42. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

43. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	Protospacer
***************************************************

44. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	Protospacer
***************************************************

45. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

46. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

47. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

48. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

49. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

50. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

51. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

52. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

53. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

54. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

55. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

56. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

57. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

58. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

59. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

60. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

61. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

62. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

63. spacer 3.1|1054280|51|NZ_CP019586|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
*****************************.*********************

64. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
tggaatccgacgaggcggcgggcacga	Protospacer
  *. ******************* **

65. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
cggcttccggcgtggcggcgggcagga	Protospacer
  * *****.** **************

66. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP049043 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_6, complete sequence) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
gccgttccgagaaggcggcgggcaggt	Protospacer
.* ******* .**************

67. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to MN585980 (Microbacterium phage Gina, complete genome) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
gcggctccgtcgaggcggcgggcacca	Protospacer
.***.**** **************  *

68. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to MN586059 (Microbacterium phage Teamocil, complete genome) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
gcggctccgtcgaggcggcgggcacca	Protospacer
.***.**** **************  *

69. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

70. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

71. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

72. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

73. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

74. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

75. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to MK279840 (Mycobacterium phage JacoRen57, complete genome) position: , mismatch: 7, identity: 0.741

acggttccgacgaggcggcgggcagga	CRISPR spacer
gtacgcccgacgaggcggcggtcagga	Protospacer
...  .*************** *****

76. spacer 2.1|1054100|27|NZ_CP019586|CRISPRCasFinder matches to NZ_CP015090 (Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence) position: , mismatch: 7, identity: 0.741

acggttccgacgaggcggcgggcagga	CRISPR spacer
ttggttccggcgaggcggcgggcgtag	Protospacer
 .*******.*************. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1424809 : 1433654

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010976185.1\|1424809_1425877_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	4.5e-25	33.0
WP_017268568.1\|1425960_1426737_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.3e-05	29.2
WP_017276921.1\|1426738_1427722_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_014527790.1\|1427766_1428531_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_014527789.1\|1428838_1429516_-	aldolase	A0A077SK32	Escherichia_phage	2.6e-50	50.2
WP_026030144.1\|1429532_1430537_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.2e-13	26.8
WP_014527788.1\|1430679_1431585_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.9e-70	49.3
WP_017276918.1\|1431596_1432373_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_017276917.1\|1432376_1433654_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.3e-74	42.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP019585

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019585_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019585_1

403285-403394

Orphan

Consensus_repeat	Method
TCATCCCGGCGGTCCCGCCGCGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019585_1

>merge|NZ_CP019585|1|403285-403394|CRISPRCasFinder
TCATCCCGGCGGTCCCGCCGCGCGGCGATCAGGTCCATGAGCCGCTCGCGCCGGTCACCGCGGTCGCCGATCAGTTCCATCAGGTCATCACGGCGGTCCCGCCGCGCGGC

>NZ_CP019585|1|1|403285-403394|CRISPRCasFinder
TCATCCCGGCGGTCCCGCCGCGCGGC	GATCAGGTCCATGAGCCGCTCGCGCCGGTCACCGCGGTCGCCGATCAGTTCCATCAGG
TCATCACGGCGGTCCCGCCGCGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019585.1\|WP_027988669.1\|394143_394530_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019585.1\|WP_080590575.1\|390124_390334_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019585.1\|WP_088895996.1\|406319_406799_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019585.1\|WP_088895995.1\|404090_405089_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP019585.1\|WP_080590574.1\|391880_393452_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP019585.1\|WP_033050746.1\|405328_405952_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|131216
NZ_CP019585.1\|WP_088895997.1\|406856_407492_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236494
NZ_CP019585.1\|WP_088895993.1\|402195_402513_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288799
NZ_CP019585.1\|WP_088895992.1\|398778_399183_+\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573
NZ_CP019585.1\|WP_015242497.1\|407603_407873_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019585.1\|WP_088194664.1\|411455_411944_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019585.1\|WP_017276524.1\|390515_391214_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP019585.1\|WP_157738215.1\|410956_411130_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019585.1\|WP_088895999.1\|409812_410958_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|182881
NZ_CP019585.1\|WP_026030075.1\|397017_397215_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019585.1\|WP_017275942.1\|411947_413177_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP019585.1\|WP_027988678.1\|402553_402901_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019585.1\|WP_080659507.1\|401927_402215_+\|DUF1612-domain-containing-protein	unknown	unknown	gnl\|CDD\|336802
NZ_CP019585.1\|WP_027988667.1\|388865_390128_+\|DUF2092-domain-containing-protein	unknown	unknown	gnl\|CDD\|226416
NZ_CP019585.1\|WP_088895998.1\|408012_409770_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227903

Protein	Function_ID	Function_description	E-value
NZ_CP019585.1\|WP_088895998.1\|408012_409770_+\|hypothetical-protein	gnl\|CDD\|227903	COG5616, COG5616, Predicted integral membrane protein [Function unknown].	1.65245e-50
NZ_CP019585.1\|WP_088895995.1\|404090_405089_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	3.49822e-149
NZ_CP019585.1\|WP_080590574.1\|391880_393452_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	4.07592e-49
NZ_CP019585.1\|WP_033050746.1\|405328_405952_+\|cytochrome-c	gnl\|CDD\|131216	TIGR02161, Cytochrome_c-type_protein_NapC, periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.	3.76678e-113
NZ_CP019585.1\|WP_088895993.1\|402195_402513_+\|hypothetical-protein	gnl\|CDD\|288799	pfam11972, HTH_13, HTH DNA binding domain. This is a helix-turn-helix DNA binding domain.	5.99596e-16
NZ_CP019585.1\|WP_088895997.1\|406856_407492_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236494	PRK09391, fixK, transcriptional regulator FixK; Provisional.	1.87299e-103
NZ_CP019585.1\|WP_027988667.1\|388865_390128_+\|DUF2092-domain-containing-protein	gnl\|CDD\|226416	COG3900, COG3900, Predicted periplasmic protein [Function unknown].	1.00039e-131
NZ_CP019585.1\|WP_088895992.1\|398778_399183_+\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	2.43944e-09
NZ_CP019585.1\|WP_017276524.1\|390515_391214_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	5.92335e-135
NZ_CP019585.1\|WP_017275942.1\|411947_413177_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	9.33369e-69
NZ_CP019585.1\|WP_080659507.1\|401927_402215_+\|DUF1612-domain-containing-protein	gnl\|CDD\|336802	pfam07756, DUF1612, Protein of unknown function (DUF1612). This family includes sequences of largely unknown function but which share a number of features in common. They are expressed by bacterial species, and in many cases these bacteria are known to associate symbiotically with plants. Moreover, the majority are coded for by plasmids, which in many cases are known to confer on the organism the ability to interact symbiotically with leguminous plants. An example of such a plasmid is NGR234, which encodes Y4CF, a protein of unknown function that is a member of this family. Other members of this family are expressed by organisms with a documented genomic similarity to plant symbionts.	1.00309e-36
NZ_CP019585.1\|WP_088895999.1\|409812_410958_-\|AI-2E-family-transporter	gnl\|CDD\|182881	PRK10983, PRK10983, AI-2E family transporter YdiK.	9.98467e-44

>NZ_CP019585.1|WP_027988678.1|402553_402901_-|hypothetical-protein
MNKFLLMTAGLLLMPLPALSQSAPDTGSRDPGSIHDREIEDLLRSITDEVSGGSGGPRRGAAFLLRSGDATVAVRCDPRESMKDCVDLTTSLLEKARSAMPTGGGAPGTAPPPRP
>NZ_CP019585.1|WP_088895993.1|402195_402513_+|hypothetical-protein
MRCPWADCSRRDRAEGARPAGAGKNDDGAKLKGRRTSSTLPEPVDLVMARPLVSASMVAKTLDVTPQAARRIVLELGLREIALVTVDDAASLVLRIVNTLQECFK
>NZ_CP019585.1|WP_080659507.1|401927_402215_+|DUF1612-domain-containing-protein
MDEDARLEEWRGVLRQAHDLPPVLQAIVALDAWNVLSVLQHAPWLGRVLAASILRQAGVTASAHLAAINLGLETMPVERRRHRDRNFRLLALPMG
>NZ_CP019585.1|WP_088895992.1|398778_399183_+|BA14K-family-protein
MKAPTLAFAVLAAAIGMSPAKAQTCIGICNGGTGGTTNHNLFIEREYRDFLQQRYPNYGSRYRGMRPDISIGPGATVGGPRVGVRQQFRLRQRRVIDANRHLRWCQERYLSYRLADDTFQPFEGARRPCNSPYN
>NZ_CP019585.1|WP_026030075.1|397017_397215_-|hypothetical-protein
MDDTEAKSAGPIEPASDLSEIAAQCAATNLLDVAAQLAGLAEDLKALAARPIEPIPTLAEPDDQP
>NZ_CP019585.1|WP_027988669.1|394143_394530_-|hypothetical-protein
MGTPVLDQVGFEMIVYVAEISGRGIAAFDAANDIEAQAQLANRGLLRDLIVLQNEGRALWDGVADIHLRTATPEETEIWQISRTAAVQSGEDSDDEGRHVFLVPVVDPSHDNFDDDDDPHHDDDRDGD
>NZ_CP019585.1|WP_080590574.1|391880_393452_-|mechanosensitive-ion-channel-family-protein
MASVGSFLVFEWPPLLRKIILALLLAVIVFRVVRAIGKLLFALSGASGIADQPSSAFESDAARRFWLWRISIIAGFLLFGWAIVSLMPALSFSNEVTRLAAFLFGLGILVTAVEVVWRRPDKPASLVVKSLLTLYLVVLWSAWVAGLLGLLWLGIYSLLLPPLVRGVGDVAQALATRAQRTGPPGIVLSVVIVRGARAAVIAAAVAWLAYIWRIRAAALAGSEPGAIVIPGLLNGIIALLVADLLWQMSKALIAYRMGLGPKDGSNIDELARSGRLRTLLPIFRNVLAVFIGAVTVLTILSGLGVQIAPLIAGAGIFGVAIGFGSQTLVKDVLSGVFYMLDDAFRVGEYIQSGSYKGTVESFSLRSVRLRHHRGPIFTVPFGELGAVQNMSRDWVIDKMTLNVTYDADVDLARKLIKKVGQELAADPEFAADTIEPLKMQGVDSFGDFAIVLRMKLMTKPGAQFTIKRRAFMMIKKAFDENGIKIAVPTVHVSGGSDNAAAAQQALNMRKAAELAANKAPVGL
>NZ_CP019585.1|WP_017276524.1|390515_391214_+|aquaporin-Z
MFKKLCAEFLGTCWLVLGGCGSAVLASAFPQVGIGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGSTHRRVPAGFAPIAIGLALTLIHLVSIPVTNTSVNPARSTGPALFVGGWALSQLWLFWIAPLFGAAIAGIVWKSVGEEFRPVD
>NZ_CP019585.1|WP_080590575.1|390124_390334_+|hypothetical-protein
MTFCKRMLIISLTWAGLCIGDLARDQSVVSIPSLVSSAVARVGRPLTPVSVAGVARRTTRRCAAGVYNC
>NZ_CP019585.1|WP_027988667.1|388865_390128_+|DUF2092-domain-containing-protein
MSNAHITIFGDSKYDLRWRKFGRNASLCEGVARKLLMAGALVAATNVPCWSQSVADTVKQYSKESMQQALQTREQYDVHGLSFDTGQSTLQPGAKPLLDDIATALKNFPDWSLRIVGHTDASGSAESNERLSLERANTIKAALVERGIDAGKLLAAGAGQSRPIASNETDEGKALNRRVELMRFTDSAEAKKLLKAMSDYLAAQKAISFAYDANLQVVTNSDQKLGLASSGTVTLSRPDKVHTTRSGGFVDVESLFDGKTLTLLGKNVNKYTQVEIPGTVDHLVDELKDKYGLPLPAADLLLTNAYDELIQGVYDSKDLGSGVINGAECDSLAFRKDDVDFQIWVAQGAQPHPCRFVITSRLVKGGPEYSVQIRDWKSGDGVTLGDFSFKNPTDAEKIDVNDLKGNLGELPENFVGGGGK
>NZ_CP019585.1|WP_088895995.1|404090_405089_-|IS30-family-transposase
MSQCYLQLTLPDRRRVHQLLERKVPIAEIARQLGRHRSTIYRELKRNTFHDAEFPEYSGYYSGIANDISKERRRRLRKLSRHAQLRELVIEQLKALWSPEQIAGRLLADGVSAVRVCTETIYRFIYSKEDYALELYQHLPEGRRKRRPRSRKPRDGLIPVDCRIDQRPDFIADRSQFGHWEGDLLIFRRDLGEANVTSLVERKSRYTVMIKNGSRHSRPLIDKIIDAFSPLPAFARQSFTFDRGTEFRGFKALEDGLGARSWFCDPNSPWQKGAVENTNKRIRRFVPSDTDLSAVSQPQLVALAHHLNSLPRKCLGYRTPAEVFMAHLRDCG
>NZ_CP019585.1|WP_033050746.1|405328_405952_+|cytochrome-c
MTLGGFVGGVIFWGAFNTALELTNTEEFCVSCHEMRANVYEELTRTIHFSNRSGVRASCPDCHVPHEWTDKIARKMQASKEVWGKIFGTINTREKFLDHRLELAKHEWARLKANDSLECRNCHSSAAMDLSKQTQRAAEIHTRYLLPGRATCIDCHKGIAHELPNMQGVEPGWKLPPELEGETLPSASAIDELKKVMNDSHTVAFGN
>NZ_CP019585.1|WP_088895996.1|406319_406799_+|hypothetical-protein
MRATWVIPVAALVLLLDSSDGSADQPGKSADQPTKYVPSVGEIMTKIDLNRSKLWYSVKLRNWALAGYQLEQVKTGFDDVSRHHPDKSNFDFANTQKIANLIEEAIVARSDEQFQQSFALMTTECNDCHRAVGKPFLHVGAPKIPSPYSDKMLEPGAFR
>NZ_CP019585.1|WP_088895997.1|406856_407492_-|helix-turn-helix-domain-containing-protein
MNTSISVSWGRHINAIPPQSGEAALASISSFVDGQCIYSFGERADQVYRVEFGAVRVYRLAANGRRQILAFHFVGNWFGLQSRDRHSSHAEAIGVTGVRCISLQEEPLFRPALFSAALENYSAAQEHQLVIGRQSAIERVAAFLLEMSERSDYSRRFELSMSRVDVADYLALTVETVSRSLTKLKHRGFIELHGARGIELVGYRALQNLCL
>NZ_CP019585.1|WP_015242497.1|407603_407873_-|hypothetical-protein
MNGEPDWKHCMAAALRRFPARSLQIRELSMRDEDFRGMCEDFAAAENALAAVDQLPVHVREERRAEFKGLIESLAAEIAEALGPADGFI
>NZ_CP019585.1|WP_088895998.1|408012_409770_+|hypothetical-protein
MTIADRGSVRAGSPTALPTNTEILSQLDRIRLSAEFDVPDRARKFLAYIVGEAIAGRADRIKAYSIATEVFGRDSSFDAQTDPVVRIEAGRIRRALERYYFVAGSNDPIVIKIPKGGYAPAFEKRDGAPYPLSFGQAPNVQSRSIPLEQTALWVSVATVGLLTCGLLANAFLGSAATTIESLTKPGGTRPNIPKLMVMPFEDLSQTPQSAMITRGLTDEVISNIAKFKEIVVVAGPAAPNPHGAEREYPAFALEGRVRLDGDKLRLGIRLVQHSDGSVVWANTYDEVLQPRKIIELQQNAAAAVASAIAQPYGIVFQANATHFMRSVPDDWQAYACTLAYYGYRGDLNPQTHATVQECLQQATTQFPDYATAWALLSLTYVDELRFRYRLHRSTTVSLAHAIEAAARAVELDPQNVRALQAEMLTLFFRGEVNAALTVGARAYAINPNDTELSGEYGFRLALSGQWRSGCDLVSKTVASNPGPVGYFEAALAVCRYIEHDYVAAERWARSADLHANPVYHVILLAILGKLGKMDLARTEREWLEANVPGFLENARNEVALRIHRPEDQQHFIEGLRQAGVSIPGK
>NZ_CP019585.1|WP_088895999.1|409812_410958_-|AI-2E-family-transporter
MDDNPLSQRNPGPVNPAARPSIEPKITEIARIGLVGLFAYWSFTLIAPFAIILIWAAILAVALYPAYAALSAILGHRPRVAALVITMLGLLVIVAPLAAIAISFAEGVQVVLARLNDRSLLISAPPDSIRSFPLIGERIYSVWSMASDNLEAVLQQIKPSLLQAGSKALGKIASIGADLLSFVVSVLVAGFLFGSGARLANSAQGFASRMGGDRGVGFLQLAAATIRNVARGVIGVALLQAFLCVLILSLFKVPAPGAIAFVVLILCIIQIGPALVLLPVIVWAWTSMEFGMAALFTILLIPLLIIDNVMKPILVARGLSTPTLVILLGVLGGTLSYGLIGLFLGPIVLSVFHSLLLIWMNTDTVGSEGLRLGESRLPNPT
>NZ_CP019585.1|WP_157738215.1|410956_411130_+|hypothetical-protein
MAHLAFDAGNKKLIRVVFEACAFDPVEQGHFSWSNASPVFRTDRSVAGARSPSCSKR
>NZ_CP019585.1|WP_088194664.1|411455_411944_+|hypothetical-protein
MEDSLHPAAVAHLPPFITAPGQTDVLFNVMIVFVLLMIFVVGILYLRLHALPEHMAHGASKVQLQIVGVLALIALFTHNHLFWIAALLLAMVEFPNFSSPVESIARSLAKMADRHDGTDEPGTSAQPAAMPPRANESHASPPQWVPLEIEAVAGDDKAERRG
>NZ_CP019585.1|WP_017275942.1|411947_413177_+|HlyD-family-secretion-protein
MLEFLICSLLTIFPDYLVRRYVQGKRVGREINLYSMWFELRYGITACLILTISLITMIFYFHPSTSNVTAVFRTVTIMPESTGRVAEVYVDLNEKVSAGAPLFRLDDSEQQAALETARRRVAEIEAEAIVAQSELASADGLIAQAEGDYLQALNELETQVELNQRNPNIVARREIERLQVAVDGRDGARAASISNKRTLETKIASLLPAQKASAEAALTQAQVELDKTIVRAGTAGVVQQFALRAGDIVNPMIRSAGILVPEQRRIGLIAGFGQIEAQVMKTGMIAEATCIGKPFTIIPMVVTEVQDVIAAGQIRPTDQLVDAQQLASPGTLTAYLEPLYEGQFAGVPPGSSCIANAYTSNHDALHAPGISTPHWLFLHVVDAVGLVHAMILRLQALLLPVQTLVFKGH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	403311-403368	0	1.0
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	1180665-1180722	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1086301-1086358	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1186250-1186307	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	275823-275880	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	7342-7399	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	819905-819962	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	709941-709998	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	618048-618105	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	534472-534529	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	320258-320315	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	295298-295355	1	0.983
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	373772-373829	2	0.966
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	347456-347513	2	0.966
NZ_CP019585_1	1.1\|403311\|58\|NZ_CP019585\|CRISPRCasFinder	403311-403368	58	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	347117-347174	2	0.966

1. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

2. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

3. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

4. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

5. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

6. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

7. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

8. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

9. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

10. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

11. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

12. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

13. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.966

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgttcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************.***********.***************************

14. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.966

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgttcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************.***********.***************************

15. spacer 1.1|403311|58|NZ_CP019585|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.966

gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgttcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************.***********.***************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

450354 : 458683

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_127515557.1\|450354_450723_+	DUF4055 domain-containing protein	A0A0A0RTF5	Escherichia_phage	1.5e-07	33.1
WP_088194655.1\|450737_451010_+	hypothetical protein	NA	NA	NA	NA
WP_003535606.1\|451275_451479_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_127515555.1\|451579_452008_-	hypothetical protein	NA	NA	NA	NA
WP_088896013.1\|452809_453250_-	hypothetical protein	NA	NA	NA	NA
WP_010967384.1\|453669_455307_-	chaperonin GroEL	A0A219YK78	uncultured_virus	2.5e-176	63.1
WP_010968824.1\|455382_455679_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	8.4e-22	58.7
WP_010967386.1\|456233_456395_+	hypothetical protein	NA	NA	NA	NA
WP_014531797.1\|456764_457214_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	3.8e-18	48.3
WP_088896014.1\|457804_458683_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	9.5e-21	27.2

DBSCAN-SWA_2

1260322 : 1299564

Bacillus_phage(11.11%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088896187.1\|1260322_1261360_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013845291.1\|1261813_1262071_+	WGR domain-containing protein	NA	NA	NA	NA
WP_013845290.1\|1262308_1262908_-	hypothetical protein	NA	NA	NA	NA
WP_088896189.1\|1263159_1263615_-\|transposase	transposase	NA	NA	NA	NA
WP_088896190.1\|1263985_1264591_-	hypothetical protein	NA	NA	NA	NA
WP_088896192.1\|1265619_1266507_+	hypothetical protein	NA	NA	NA	NA
WP_088896193.1\|1267165_1268857_+	type IV secretion system ATPase VirD4	NA	NA	NA	NA
WP_088896194.1\|1269262_1269988_-	response regulator	W8CYM9	Bacillus_phage	8.1e-18	30.7
WP_088896195.1\|1271205_1272246_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_088896196.1\|1272285_1273404_-	type IV secretion system protein VirB10	NA	NA	NA	NA
WP_088896197.1\|1273400_1274282_-	P-type conjugative transfer protein VirB9	NA	NA	NA	NA
WP_088896198.1\|1274278_1274992_-	type IV secretion system protein VirB8	NA	NA	NA	NA
WP_088896199.1\|1274978_1275146_-	type IV secretion system lipoprotein VirB7	NA	NA	NA	NA
WP_088896200.1\|1275178_1276066_-	type IV secretion system protein	NA	NA	NA	NA
WP_088896201.1\|1276146_1276830_-	pilin minor subunit VirB5	NA	NA	NA	NA
WP_088896202.1\|1276843_1279213_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_003537077.1\|1279212_1279539_-	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_014528518.1\|1279535_1279898_-	pilin major subunit VirB2	NA	NA	NA	NA
WP_088896203.1\|1279911_1280619_-	type IV secretion system lytic transglycosylase VirB1	NA	NA	NA	NA
WP_080589971.1\|1280958_1281246_-	hypothetical protein	NA	NA	NA	NA
WP_157738225.1\|1281616_1282147_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_010969783.1\|1282226_1283423_+\|transposase	IS256-like element ISRm5 family transposase	A0A0K2CZ57	Paenibacillus_phage	5.9e-74	43.6
WP_003535579.1\|1284690_1285416_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_088896204.1\|1286227_1286677_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	3.3e-17	46.3
WP_088896205.1\|1287303_1287594_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_088896206.1\|1287668_1288160_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_014528030.1\|1288208_1289627_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_086018123.1\|1290206_1290764_-	NUDIX hydrolase	A0A2H4IB87	Erwinia_phage	1.8e-09	35.3
WP_086017832.1\|1290826_1291021_+	hypothetical protein	NA	NA	NA	NA
WP_014528033.1\|1291281_1291485_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	8.0e-08	51.7
WP_088896208.1\|1292140_1292662_+	hypothetical protein	NA	NA	NA	NA
WP_017265390.1\|1292719_1292929_-	hypothetical protein	A0A291AUN9	Sinorhizobium_phage	4.4e-25	83.3
WP_003535613.1\|1295511_1295955_+	helix-turn-helix transcriptional regulator	A0A1V0EEW3	Caulobacter_phage	2.7e-08	51.7
WP_015241594.1\|1297096_1297543_-	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	1.0e-31	54.2
WP_088896325.1\|1298034_1299564_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.5e-117	43.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP019584

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019584_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019584_1

174657-174803

Orphan

Consensus_repeat	Method
TCTCCCCGCATGCGGGGAGAAGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP019584_1

>merge|NZ_CP019584|1|174657-174803|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGGAATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCCTCTCCCCGCATGCGGGGAGAGGGTTAGGGTGAGGGGCGGTCGTCCCCGCGCGCGGGGAGAAGGT

>NZ_CP019584|1|1|174657-174803|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGG	AATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCC
TCTCCCCGCATGCGGGGAGAGGGT	TAGGGTGAGGGGCGGT
CGTCCCCGCGCGCGGGGAGAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019584.1\|WP_010968389.1\|173742_174597_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP019584.1\|WP_014529988.1\|163693_164422_+\|pilus-assembly-protein-CpaD	unknown	unknown	gnl\|CDD\|227748
NZ_CP019584.1\|WP_010968395.1\|186568_187387_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP019584.1\|WP_003531959.1\|177440_178574_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NZ_CP019584.1\|WP_010968391.1\|175803_177432_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NZ_CP019584.1\|WP_003537933.1\|169550_170714_+\|IS4-like-element-ISRm16-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP019584.1\|WP_010968387.1\|170970_171780_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343
NZ_CP019584.1\|WP_010968385.1\|167320_168331_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP019584.1\|WP_010968386.1\|168338_169322_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP019584.1\|WP_010968383.1\|164444_165731_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227298
NZ_CP019584.1\|WP_010968384.1\|165861_167262_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP019584.1\|WP_003531958.1\|178573_179656_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NZ_CP019584.1\|WP_003537743.1\|173389_173734_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP019584.1\|WP_010968390.1\|174833_175793_-\|glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240641
NZ_CP019584.1\|WP_017264583.1\|183617_184637_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP019584.1\|WP_010968388.1\|171910_173302_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|223338
NZ_CP019584.1\|WP_003531955.1\|183175_183556_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|224716
NZ_CP019584.1\|WP_003531957.1\|179836_181696_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP019584.1\|WP_010968394.1\|184745_186551_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP019584.1\|WP_010968392.1\|181987_183055_+\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|226293

Protein	Function_ID	Function_description	E-value
NZ_CP019584.1\|WP_010968389.1\|173742_174597_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21182e-26
NZ_CP019584.1\|WP_014529988.1\|163693_164422_+\|pilus-assembly-protein-CpaD	gnl\|CDD\|227748	COG5461, COG5461, Type IV pili component [Cell motility and secretion].	3.19225e-111
NZ_CP019584.1\|WP_010968395.1\|186568_187387_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01351e-123
NZ_CP019584.1\|WP_003531959.1\|177440_178574_-\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP019584.1\|WP_010968391.1\|175803_177432_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NZ_CP019584.1\|WP_003537933.1\|169550_170714_+\|IS4-like-element-ISRm16-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.69173e-26
NZ_CP019584.1\|WP_010968387.1\|170970_171780_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	1.63751e-80
NZ_CP019584.1\|WP_010968385.1\|167320_168331_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.38407e-115
NZ_CP019584.1\|WP_010968386.1\|168338_169322_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	7.10359e-56
NZ_CP019584.1\|WP_010968383.1\|164444_165731_+\|transcriptional-regulator	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	6.1818e-120
NZ_CP019584.1\|WP_010968384.1\|165861_167262_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	0
NZ_CP019584.1\|WP_003531958.1\|178573_179656_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP019584.1\|WP_003537743.1\|173389_173734_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.39809e-11
NZ_CP019584.1\|WP_010968390.1\|174833_175793_-\|glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240641	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family. This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.07536e-138
NZ_CP019584.1\|WP_017264583.1\|183617_184637_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	2.85789e-165
NZ_CP019584.1\|WP_010968388.1\|171910_173302_+\|aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0
NZ_CP019584.1\|WP_003531955.1\|183175_183556_+\|methylglyoxal-synthase	gnl\|CDD\|224716	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism].	2.60323e-72
NZ_CP019584.1\|WP_003531957.1\|179836_181696_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP019584.1\|WP_010968394.1\|184745_186551_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP019584.1\|WP_010968392.1\|181987_183055_+\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|226293	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane].	5.68793e-158

>NZ_CP019584.1|WP_010968389.1|173742_174597_+|C40-family-peptidase
MPEVLDRRLNAYREDIAEARLRGLVEAKRFVEGTPAAVSVPVTPLRARPEAGCGTDTELLYGETVRVLDVADGWAWVRSDLDGYVGYVPENVVQPPQAPATHLVAVPRTFVYRGADLRFPQAFALSMGSRIAVVGEAETRGTRYFLLDGGLAIVADHCIPAAGALTEDYVAIAARFLETPYLWGGRSGFGIDCSGLVQLAMQMAGRNAPRDSDMQASGLGRAIEREELTRGDLVFWKGHVAIMEDEKTLLHANGHTMTVAREGLEDAIRRIGWLYAQPTGYRRP
>NZ_CP019584.1|WP_003537743.1|173389_173734_+|winged-helix-turn-helix-transcriptional-regulator
MPVELTPSQALGLWHAVSLEQVRVDSRDLTLRQMAILLQIYLVPPPHTVRGLAASLGVTKPVITRALDTMGALGLVDRIRDERDRRNVIIKRTVEGALYLEKFGDLIINQGRKM
>NZ_CP019584.1|WP_010968388.1|171910_173302_+|aminopeptidase
MAPFQFIERQSPFNTSNGKTLPIFAVTPAHIETGSIDPIALDWAKKAGFKAESGAVLLIPSADGHLGGALFGLGANPSDEPFLTGKLARALPAGKWHIETAPLTANRLALGYGLGSYRFERYKSAKTDAPTLLIPADSDATDIKRQLAGVFLARDLINTPTNDMGPEALEAAFRALAAHYKADVSVISGEALLTENFPLVHTVGRASAEAPRLLEMRWGRKGHRKVTLVGKGVCFDTGGLDIKPAASMLLMKKDMGGAANVMGLALMIMDAKLKVDLRVIVPVVENSISANAFRPGDIYKSRKGLTVQIDNTDAEGRLILADALAYADEEKTDLVVDMATLTGAARVALGPDLPPFFTDDDDLARDLAEASLTVDDPVWRMPLYRGYDKDVSARIADLTNAPSGGMAGSITAALFLKRFVTNAKSWVHFDIFGWAQSERPHSPIGGEAQAIRALYHHIGRIAG
>NZ_CP019584.1|WP_010968387.1|170970_171780_-|tetratricopeptide-repeat-protein
MTMQDNFSFSLRRLATGVAVAMVALSLSACAGQQGRKELTTGSIPKLTRPVQSMNATELAAAAERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIAGQELTSEQAEANVAYLRSVLSQQGAWKQLAKAD
>NZ_CP019584.1|WP_003537933.1|169550_170714_+|IS4-like-element-ISRm16-family-transposase
MRFTPSIFAQLLKAIDRRSFQAIVDRHAGDAYDKCFTSWDHLVALIYAQLSATTSLRGLEASFNANSQHHYHLGSGRLMRSTLSDANRRRPVAVFAETFALLAGQLDRQTRREGTKMLRLIDSTPIPLGKLYDWAKSNGRIRGMKLHVVYDPKADCPGILDITDANVNDAQIGRTITIEKGATYVFDKGYCHYGWWTAIAEAGASFVTRPKTNMGLALVAERPVEQPQGDGFLVLEDSQVSLASKGDSKLPIGLRRVIVKRQDGDTITLLTNDLERSAVEIGQLYKDRWQIELLFRWIKQHLKIRKFLGNNDNAIRLQIFAAMIAYALLRIAARLARVPLPILRFTDLVTQCLFQRKSIAEIHKPPQVNPSRPKPRTIPNQMVFRYA
>NZ_CP019584.1|WP_010968386.1|168338_169322_+|type-II-secretion-system-F-family-protein
MAGWIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIQVADKF
>NZ_CP019584.1|WP_010968385.1|167320_168331_+|type-II-secretion-system-F-family-protein
MFGIDITVLGLAGLVALAAAALAYGVLYPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFDI
>NZ_CP019584.1|WP_010968384.1|165861_167262_+|CpaF-family-protein
MPAVQPVPVERSAAPVLGETVAAPSRPQAAAPPQRRRAPRAEDYYDTKSQVFSALIDTIDLSQLSKLDIESAREEIRDIVNDIITIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDIADIMVNGAGQIFIEVGGKVEESEIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGTALTIRKFKKDKLTLEQLVRFGSITPEAAVLLQIIGRVRCNIVISGGTGSGKTTLLNCLTRYIDSTERIITCEDSAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYTLPARTVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIVGRHVSTGIGRPHFWDRARYFNEDKRLAATLDAMEKQQ
>NZ_CP019584.1|WP_010968383.1|164444_165731_+|transcriptional-regulator
MNAIEYTIDSGGTGDWPADGTRPGDLEQLRPLPRISIHAFCESEAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELAPLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEPLGRSLAFIGAKGGCGSSVIAHNCAWGISNLFSTETILADLDLPYGTANIDFDQDPPQGIAEAVFAPERLDEVFLDRLLTRCSEHLSLLAAPSMLDRAYDFETGAFQPILEILQRSAPVSVLDLPHGWTDWTRSVLSAADEVVITAAPDLASLRNAKNLLDALKKLRPNDKVPHLVLNQVGVPKRPEIAPDEFCASLEIEAAAIIPFDAVLFGNASNSGRMIAEIDRKSPAAETFAQLSHLLTGRTAIKKARRGGLGKVLAKLGRR
>NZ_CP019584.1|WP_014529988.1|163693_164422_+|pilus-assembly-protein-CpaD
MQKRSAARTSLERQPPMALNRLPHRVVLYAIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWRGTDKGDGGTTIVFN
>NZ_CP019584.1|WP_010968390.1|174833_175793_-|glyoxylate/hydroxypyruvate-reductase-A
MPAKSPVIVDLKFIPEEVEAALAGAFPGREVIDLADPAHQERDLSGIDYAVVWKSAPDLFSRAPDLKVVFSGGAGVDHVLTLPGLPDVPLVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESGLPLEHVVDKVAGY
>NZ_CP019584.1|WP_010968391.1|175803_177432_-|ABC-transporter-ATP-binding-protein
MTDTLLSVRDLSVAFHQGGETSLAVDRISFDIKRGETVALVGESGSGKSVSANSILKLLPYPAASHPSGEILFNGKDLLKASDDELRHVRGNDVTMIFQEPMTSLNPLHTIEQQIGEILEIHQDLKGAAARARTLELLEQVGIREAEKRLGAYPHQLSGGQRQRVMIAMALANRPELLIADEPTTALDVTVQAQILELLKSLKDEHGMSMLFITHDLGIVRKIADRVCVMTKGKIVETGPTAEIFANPQHAYTRHLLASEPRGEPPPSDASRPIVIEAKDMKVWFPIKAGFLRRVVDHVKAVDGIDLTLRAGQTLGVVGESGSGKTTLGLALTRLISSKGRIAFVGEDIDAYSFREMRPLRNRMQVVFQDPYGSLSPRMSIADIIGEGLKIHEKALTDGERDQRVAAALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPQFVMLDEPTSALDMSVQAQVVDLLRDLQRKHNLAYLFISHDLRVVRALANEVIVMRLGKVVEQGPAERIFEAPTEDYTKALMAAAFNLEAVNLAAVHQ
>NZ_CP019584.1|WP_003531959.1|177440_178574_-|ABC-transporter-permease
MSTATAYAGAPEKGWLTPIGRRRWQNFKANRRGYWSLWLFLLLFGLSLFAEFIANDKPILASYKGEILVPVLFDYPEEKFGGFLAETDYRSDFIRDEIGANGWMIWPPIRYSYQTVNSSIPHSAPTPPFWLMSEEERCSAYPQGADDPGCIAGNLNWLGTDDQARDVMARMIYGFRISVLFGLALTIASAVIGVSAGAVQGYFGGWTDLLMQRFIEIWSSMPVLYILLIIAAILPPGFFILLGIMLLFSWVGFVGVVRAEFLRARNFEYVNAARALGVGNGTIMYRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQGKSNLQAPWLGLTAFFAMSIMLSLLIFVGEATRDAFDPRKTFR
>NZ_CP019584.1|WP_003531958.1|178573_179656_-|microcin-C-ABC-transporter-permease-YejB
MGAYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVGGGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDLIIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTKNSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYIFSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFERRDV
>NZ_CP019584.1|WP_003531957.1|179836_181696_-|ABC-transporter-substrate-binding-protein
MPNFCRTVKPGLAASLLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKSAEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFDMVKEHNPLFSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKVPAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIADPAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELPYYGMDFPDAWWSKNTAAK
>NZ_CP019584.1|WP_010968392.1|181987_183055_+|penicillin-insensitive-murein-endopeptidase
MKFDARAALRRCGSTVLALIMGVSLVSAEAAANDAPPAKELFGAKDLPMQAAPASFGFYSKGCLAGGVAIPTDGPTWQAMRLSRNRRWGHPAMIALIERFSHDAVEKIGWPGLLLGDISQPRGGPMLSGHASHQIGLDADIWLTPMPQRTLSYQERETISATSMLDKSKFLTVDPSIWTPSHARLIMMAASYPQVERVFVNPAIKKKLCDTWRGDRAALGKVRPIYGHDYHFHIRIKCPPGSKGCKDQAVVPAGDGCDKSLAWWFTDEPWAKPKQKPGAKPPKPKFAKLADLPKACALVLNGPAPASEQEATYGTAYRAPAAIPAAATSIEAVIEAAGEAPLANIPVPSPRPGLQ
>NZ_CP019584.1|WP_003531955.1|183175_183556_+|methylglyoxal-synthase
MADRKCLALIAHDQKKDDLAAFAKANEAVLSKWKIVATGTTGGRVLDVCPALDIVRLKSGPLGGDQQIGALIATGDVDCLIFFVDPLTAMPHDVDVKALMRLAIVYDIPMALNRATAEQLIDFRRN
>NZ_CP019584.1|WP_017264583.1|183617_184637_+|glucokinase
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLGPIRTGDFATIEEAMQKGILDKTSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLASLGLEDVLVINDFEAQALAIAAPADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFRIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMRTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR
>NZ_CP019584.1|WP_010968394.1|184745_186551_+|ABC-transporter-ATP-binding-protein
MNAKDRNKRAVDSETITGILKRVIAENGRDHIRGYAFAIACLVVVAATTGFTAWIMEAVVNEAFANRRADIVLLICGAIFAAFVLRGLATYGQAVALSKIGNNIVARYQRRLYAHLMALSVGYFHEHRSAQLAAKVSQNVSGIRDVLNMTVTSIARDLLTLIGLVVVMFSKDWLLSLIVFFVAPPLLLGLRYISRRLRLATREAVEVNSRVLGAMQETIQGITIVKAFTMENELRRKVESIIDRAENRANRIARLSERTAPMTETFAGLAISSVLAYAAFRTIYHNVPPGAFFAFVTALLMAYDPARRLARLQVSMERAAVNARMIYEILDTVPHQRDRPDATELRLGEATVELRDVRFAYGTGEEILKGVSFRAEGGKTTALVGPSGAGKSTIISLIPRFYDPLSGEILIDGQNIAGVTKQSLRAGLAYVSQQPYLFEGSIRDNIRYGRPDATDAEIEEAARLAYAHDFILAQPQGYDTPVGEHGVTLSGGQRQRLSIARALVRNAPVLLLDEATSALDTESEAAVQKALEEAMSGRTVIVIAHRLSTVVNADKIVVMKEGIVVEEGSHEELARRPDGLYARLHNLQGSGADTVAEAQIL
>NZ_CP019584.1|WP_010968395.1|186568_187387_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGVAVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARHARVIKSGNMSLGVNLLGVLTEKAARALPAGGWDIEILEMHHKHKVDAPSGTALLLGEAAARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSATDRSIFARGAVAAALWGRSRKPGFYSMLDVLGLD

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Crispr_ID: NZ_CP019584_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019584_2

1099636-1099746

Orphan

Consensus_repeat	Method
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019584_2

>merge|NZ_CP019584|2|1099636-1099746|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTCCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAAACGGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

>NZ_CP019584|2|2|1099636-1099746|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAAAC
GGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019584.1\|WP_013844144.1\|1089419_1092074_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NZ_CP019584.1\|WP_010968998.1\|1096442_1097732_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP019584.1\|WP_010969001.1\|1102350_1103364_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274313
NZ_CP019584.1\|WP_003527322.1\|1107541_1108498_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP019584.1\|WP_003527321.1\|1108526_1110029_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP019584.1\|WP_003527346.1\|1093447_1094737_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP019584.1\|WP_010968997.1\|1095509_1096370_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NZ_CP019584.1\|WP_010968996.1\|1092499_1093438_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP019584.1\|WP_010968994.1\|1086738_1089057_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP019584.1\|WP_010968992.1\|1082335_1083733_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP019584.1\|WP_003527344.1\|1095194_1095371_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019584.1\|WP_010969003.1\|1104004_1104931_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP019584.1\|WP_010969005.1\|1106426_1107446_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP019584.1\|WP_003527320.1\|1110108_1110429_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|224656
NZ_CP019584.1\|WP_010968993.1\|1083767_1086728_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NZ_CP019584.1\|WP_003527345.1\|1095001_1095157_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019584.1\|WP_010969004.1\|1104946_1106434_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP019584.1\|WP_010969000.1\|1100154_1101153_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NZ_CP019584.1\|WP_003527334.1\|1101373_1102261_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP019584.1\|WP_010969002.1\|1103464_1103866_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647

Protein	Function_ID	Function_description	E-value
NZ_CP019584.1\|WP_013844144.1\|1089419_1092074_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NZ_CP019584.1\|WP_010968998.1\|1096442_1097732_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP019584.1\|WP_010969001.1\|1102350_1103364_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|274313	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. [Energy metabolism, Fermentation].	0
NZ_CP019584.1\|WP_003527322.1\|1107541_1108498_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.0146e-08
NZ_CP019584.1\|WP_003527321.1\|1108526_1110029_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP019584.1\|WP_003527346.1\|1093447_1094737_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41852e-81
NZ_CP019584.1\|WP_010968997.1\|1095509_1096370_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.76855e-63
NZ_CP019584.1\|WP_010968996.1\|1092499_1093438_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.33806e-16
NZ_CP019584.1\|WP_010968994.1\|1086738_1089057_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.01082e-54
NZ_CP019584.1\|WP_010968992.1\|1082335_1083733_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.58696e-52
NZ_CP019584.1\|WP_010969002.1\|1103464_1103866_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	3.33936e-42
NZ_CP019584.1\|WP_010969003.1\|1104004_1104931_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.46621e-74
NZ_CP019584.1\|WP_010969005.1\|1106426_1107446_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.67535e-71
NZ_CP019584.1\|WP_003527320.1\|1110108_1110429_-\|YnfA-family-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	3.23612e-41
NZ_CP019584.1\|WP_010968993.1\|1083767_1086728_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NZ_CP019584.1\|WP_010969000.1\|1100154_1101153_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87733e-106
NZ_CP019584.1\|WP_003527334.1\|1101373_1102261_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	2.97932e-138
NZ_CP019584.1\|WP_010969004.1\|1104946_1106434_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	4.60612e-52

>NZ_CP019584.1|WP_010968998.1|1096442_1097732_-|Hsp70-family-protein
MASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEAGQAAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWEATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAAFYFARNLDRDATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNIVSPLIGKGSLFKSFDKLLEVPSSYYANFGRWNQLSIFKTLRDFTELKKLVRASLEPEKLESFVELIEHDEGYPLYQAVSATKMRLSQAEETEFAFAPLGERARRTVRRDEFEGWIAPDLARIEEALDEVLSTTATTPDGIDKVFLTGGTSFVPAVRRLFENRFGKERIESGGELLSIAHGLALIGERDDIAAWTAAA
>NZ_CP019584.1|WP_010968997.1|1095509_1096370_-|uracil-DNA-glycosylase
MISANDLSRSELAALLAFHAEAGVEWLLEEEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAIPDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNSARNLVFAEGSAASGVMIIGPMPYADDDRDGRPFAGRHGEMLERMLSGIGLSREDVLLANAVPWRPPGNRVPSAREADICRPFIERQIALAEPKQLLLLGNFTARFFFGGETIHQLRGEWRELTFGGTSIPTLATLHPQDLVAAPINKRFAWLDLLAFKSRLG
>NZ_CP019584.1|WP_003527344.1|1095194_1095371_-|hypothetical-protein
MTARYRPIHSSFETLRYAGASSRTPFNSFGSAANEQLTAIGLARTTRPAQIFAEFIQR
>NZ_CP019584.1|WP_003527345.1|1095001_1095157_-|hypothetical-protein
MSKPLDSIRALVDTISDIRTAVRASREYSRLSIASDGRRVHDGAASRLLPS
>NZ_CP019584.1|WP_003527346.1|1093447_1094737_-|MFS-transporter
MLANFASVFSLMLSTFLMMVAFGLQSYVIPVRSVAESWSTLTISIFATGYTLGFTLSCIVTPKFVLRVGHVRVFTALITLLSIAILMCGLVVDWRAWIGFRAVSGFAIAGSYLVIESWLNERVTNENRGLLFSLYLITTMVGTIGGQYLVPLGDPSNTSLFILCGVLFSLALLPTALSSSPMPAPPARANFDIPALYRRSPVAVVGGFLAGALSGAWLNLGGVFTQKIGLSTGEGATLLASLLAGSAISQVPIGRASDRMDRRIVMVACGIAGVVSCLAMSVSIASSPPVLYALAACIGTVLFPIYALNVAHANDLARPDEYVEISSGLMITYGLGTISGPLMVGPVMDRFGPVALFIALAVYFALYSGYAAWRILQREQHDGLVAKTDFQATTVLPTPGPDVTGPLAQQDAGELIEDDTVPAWEQRAE
>NZ_CP019584.1|WP_010968996.1|1092499_1093438_+|DMT-family-transporter
MDADDASPMKGIVLKVLSVVVFVCMSTCIKAAGDDIPTGQITFYRSAFAMVPILGFLACRGALRDAFRTTDITGHLVRGFVGILAMSCGFYGLVHLPLPEAIAIGYAMPLLAVAFAAIFLGEIVRLYRWSAVFVGLAGVFIITWPRLTLFNEGGFGSAEAMGAVAVLLSAALGATAMVLVRKLVQKERTHTIVLYFSLSAAVFSLATLPFGWSELSWQAFVLLTIAGFCGGVGQILLTESYRHADMSTIAPFEYTSIVLGIVIGYFLFGDVPTATMLAGTAIVVGAGIFIIYREHRLGLERKGARKHVTPQG
>NZ_CP019584.1|WP_013844144.1|1089419_1092074_-|aminopeptidase-N
MRTNTGQIVHLENYRPTDFVLERVDLTFELDPRETKVEARMIFHRREGVSPSAPLVLDGDELTMTGLLLDQVAVPGTLYEATDDTLTIRGLPEAAPFEITVTTALSPETNTKLMGLYRTSDVYCTQCEAEGFRRITYFPDRPDVLAVYTVNIIADKASAPLLLSNGNYLGGADMGDGRHFASWFDPHPKPSYLFALVAGDLGVVEDAFTTASGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEEVFGREYDLDIFMIVAVSDFNMGAMENKGLNIFNDKYVLADPETATDADYANIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADMRSRAVKRIAEVRHLKSEQFPEDAGPLAHPVRPTQYREINNFYTTTVYEKGSEVTRMIATILGRDLFKKGMDLYFERHDGQAVTIEDFIACFEAASGRDLKQFSLWYHQAGTPLVTASGTYDAARQTYTLSLEQTVPPTPGQSSKAPMHIPLRFGLLLPDGSEARPSAVSGAEITGDVLHLTERKQTVTFSGIPSEPVPSFNRGFSAPVNLHLTQSAEHRALIARHETDLFARWQALNAMALDNLVKAAAEARTGQPIDCDDALVDALLAAAGDDRLEPAFRSQVMSLPSETDIGREIGSNNDPDAIYAGRQAILAAIATAGKDTFARLVNEMSLSGPFRPDADSAGRRALRNSGLSYLVYADGSPDKAADAFSSANNMTDLSQALTLLAHRFPDARETADALAVFKKRFADNALVIDKWFAIQATIPGASTLDRVRALMSDPLFNASNPNRVRSLVGTFAFANATGFNRIDGEGYRFLARQILDIDTRNPQLAARILTSMRSWRSLEKIRAGHARSALEEIARASNLSADVSDIVDRMLKDEH
>NZ_CP019584.1|WP_010968994.1|1086738_1089057_-|PAS-domain-containing-protein
MADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAFLLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTEFLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKRTRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGLTMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDRG
>NZ_CP019584.1|WP_010968993.1|1083767_1086728_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAEAIERSLSDIDVVAIRPASQADAKAALSVLKDAAKGSDHIAKLIASDAPLKDFLVAAFALSPFLRDTARSHPAILEALLSETLPAFLKRRIEAARVAWRGDAAGAALPDAEIMTRLRRAKREVAFAVALADLSRLFGGRETTGWLSDFAEAAVSAAIDHLLLGAHESGKFVLKDSSAPSTASGVVVLGMGKLGAGELNYSSDIDLVVFYDPQSSIITNRDDAPETFARLLRRLIRILQERTGDGYVFRTDLRLRPDPGSTPLAIPVEAAMLYYESRGQNWERAAFIKARPIAGDLEAGERFLKELTPFVFRKYLDYAAIADIHSIKRQIHAHKGHGEIAVKGHNIKLGRGGIREIEFFVQTQQLIAGGRTPALRLRQTETMLRMLAESGWIDGATAEELIEAYWFLRDVEHRIQMVHDEQTHLLPETEPELRRIAYMLGFEDTASFSNALSRVLRTVERRYAQLFEQEAKLSTETGNLVFTGQQDDPDTLETLKKLGFQRPSDIANIIRTWHYGRYRATQSVEARERLTELTPELLRVFGESRRADEAFLRFDHFLSGLPAGIQLFSLLGNNPGLLSLIVNIMSSAPRLADIIAAKPHVFDGMLEPGLLAELPTRDYLAPRIATFVGGGRHYEEVLDRLRIIAAEQRFLIGIRLLTGAITGLQAGRALTDLADLIIAAALDAVLEEVRSAHGRFPGGRVAIVGMGKLGSHELTAGSDIDLILLYDYDDEVLESDGAKPLDPVRYFTRVTQRLIAALSAPTAEGILYDVDMRLRPSGNKGPVATRITAFAKYQRTEAWTWEHLALTRARCICGDESLVGEAEAIFAEILTEKRDIAKIRKDVEEMRGLIDKEKPPKDIWDFKLIPGGLVDIEFIAQYLALVAPARGVTSPPAGTHTLEALKALGAGMMNANDLDTAAEALVLFTELSQLVRLCIDGDFDPKEAPAGLVDLVCRAGDYPDLTHLEADIRRLSKAVRRIFQGVVAAA
>NZ_CP019584.1|WP_010968992.1|1082335_1083733_+|HAMP-domain-containing-histidine-kinase
MSRISVLFRTTAVRLSALYLVLFSLCAAFLVFYVTGMSERLLQQQTRDSIAAEVTQIADVYDRAGINGLLRSLERRARQPGANLYVIAGPNGEILAGNVAALQPGLLDDEGWKSEPFRYRRFTDESRAERHVALAQVLVLDNGLRILVGRDLQEPEKFRVLVRQALMVALGIMGLGALVIWFGIGRNALRRIDRMSEASTKIMAGDLSQRLPTSGSGDEFDRLSESLNAMLERIEKLNEGLKQVSDNIAHDLKTPLTRLRNKAEAALADTEGSNQSGALEQIIAESDQLIRTFNALLMISRVEAGSAVAEMSEVDLARIVADCVELYEPLAEDKEMRIEAEAAPGVAISGNRELISQALGNLIDNAIKYAEGAENPLIRVEMMRSDRHVVLTVADHGPGIPENMRGEVVKRFVRLDESRSKPGTGLGLSLVDAVMEMHRGSLELSATEEDGRGLAVRMVFPAVAT
>NZ_CP019584.1|WP_010969000.1|1100154_1101153_+|ABC-transporter-substrate-binding-protein
MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAELVVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVPKYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAGFTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCNTVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQASGEEGAKHFLEENPDLWTKWVSPEVAEKIKAAL
>NZ_CP019584.1|WP_003527334.1|1101373_1102261_+|proline/glycine-betaine-ABC-transporter-permease
MEWLTKFPHMDDDRLRQLKKIIDEGFRSFTRAYGDAIESFFDPLQFFLIHAERFMTRTPWPIILILIAVIAWFASRNWKIVAGAIGTLLLIGYLDMWDDTMKTISMIFVCTVLSIAIGIPMGIIMSRSDRFQNIVNPVLDVMQTMPSFVYLIPVVMLLGIGKVPGLIAVVIYAIPPMIRLTNLGIRLVDKDVLEAADAFGSSNWQKLKNVQMPLALPTIMAGINQTIMMALAMVVIASMIGVQGLGQPVLKAIANQYFTLGIFNGLAIVGIAIIFDRVSQAYGRRLQRHREIIHG
>NZ_CP019584.1|WP_010969001.1|1102350_1103364_-|zinc-binding-alcohol-dehydrogenase-family-protein
MRAVAYKTPQPIANETALIDVDLPVPTPGERDLLVEVRAVSVNPVDTKVRAGVQPEPEQLKVLGWDAAGVVKAVGPKVTLFKPGDEVFYAGAIDRPGTNAELHLVDERIVGRKPQSLDFAAASALPLTAITAWETIFDRLRVNDPVPGAANAVLIIGGAGGVGSIAIQLLRALTNVTVIATASRAETREWALKLGAHHVLDHSRPLAAEIEQLALGAPAFVFSTTNTDKHVDEIVKLIAPQGRFALIDDLAVLDVTPFKRKSVSIHWEMMFARPLFGTPDMIEQHNLLNRVAELVDGGKIRTTLTETLGPIDAATLRKAHQMIETGRTRGKLVLAGF
>NZ_CP019584.1|WP_010969002.1|1103464_1103866_+|helix-turn-helix-transcriptional-regulator
MSRPRAKLTNTFPGCPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSVTPRMLTRQLRELEEAALLSRTVFPVVPPRVDYALTARGESLKPVIMALKAWGDENVLCDGDSMTLKPLESRSRPELKGA
>NZ_CP019584.1|WP_010969003.1|1104004_1104931_+|diacylglycerol-kinase-family-lipid-kinase
MKVKAIFNRDGGTFRTTDMDAYSRKVEEDFRAAGHEIEIAVVGADEMRDTLETACGRGDLDAIVAGGGDGTISAAAGVAWKTGMPLGIVPAGTMNLVARSLKLPLDIWKVPEVLANGRIIDADIGSADGRAFVHQFSMGLHARMVRYRQSYRFASRLGKISASTRAAIGVIFNPPDFEIEFDADGHRERRHVSAISVSNNHFGHDTLMYAEDLTSGHLGFYTAPPLSPAGVAKLSFDILRGKFRSSTLITEMSALTVDLHFPKMDRKINCVIDGELVPIRSGRVALRVHPGELKLLVGSQESNAGKTV
>NZ_CP019584.1|WP_010969004.1|1104946_1106434_-|glycosyltransferase-family-39-protein
MLEAVNRRPGAAVLAVAGYFLLCIILRVSVSSSLEIDEAEQAFLSQFLALGYGPQPPFYNWLQYGLAELIGPSLATMTILKNGLLFLCCLFYGLAARLVLADRRLPPIAMLGVLTLPPVFLLAQRDLSHTIAALFAVSLFLYGFLRTLKRPSLFSYLLTGVAVGIGLMAKYNFVLVPVAAIVAVLPERELRARILDWRILPAIAIATLIVLPHAYWMLQNFGFASGGTLNEMREREAEGLLLQAFYGVYSLGSAIIGGSLGPLLVFGLVFRGKLRAIWQAESQWSRIIGRMLALCLIAVLLVVLGVAATHVREKWLVLFLVLIPLYLCLKIEAANIDLTDSLRRFFLLVCVIALGALVMVSARAVVRPWFGDYSRLNIPYAAFAEAVAQAEGGQPALILANDKQIAGNLRTQFSRAQVTMPRPSNALPVDMSRRPLLLVWHDDAQPEAPVPDLLRNALSELGVPGAAAAPRHLALPYLYGTGSDRYGFSYIWVAE
>NZ_CP019584.1|WP_010969005.1|1106426_1107446_-|glycosyltransferase-family-2-protein
MNRIEEPVKPMTEVLEGVELSIVVPVFNEEESVGPLVTRIRAAMAGFLKSWELILVDDGSTDRTLPNARKELSNPDLQLKIIELQKNFGQTAAMQAGIDAASGRLIATLDGDLQNDPADIPNMVAAIEERGLDLLVGWRQNRRDALILRKIPSWCANVLIGKITGVRLHDYGCSLKIYRGSIIKQVKLMGEMHRFIPAWVAGVVPSSRIGEMPVTHHARHYGTSKYGISRTFRVILDLLAVLFFMRYKARPGHFFGSIGLAAGGLSVLILLYLAIDKFILGNDIGTRPMLIVGVMLFLSSIQLITTGILSEMMARAYFRDDEVTSYIVRQTFEREQPHA
>NZ_CP019584.1|WP_003527322.1|1107541_1108498_+|flippase-like-domain-containing-protein
MNTNWERSRRSWLARNRLALISAAAIAAYAIFVEWVWGWPVLLRQWAEIGVGPVLSALALLVATYFIRCYRIHDYFPGETRGRFLSLFRVTQVHNLLNIMLPFRAGETSFPLLMRSEFGVPLVRGTAALFVMRLLDLHALLTVAAVGLVAGRGQGAIGWVLWLIAFLSPLAFFLMKEKALTVMRRVAPAKAGPLLDEAEAGLPIGIPAFLRAWAMTMLNWAVKVVVLAWVLAIMGVAPLAASFGGALGGELSSVLPVHAPAGVGTYAAAIVAGAVSFGASADQATLETLGRASVNAHLMVIVSAVAGTMLSLLLRPKA
>NZ_CP019584.1|WP_003527321.1|1108526_1110029_-|AMP-nucleosidase
MNKRISSNSVLSVATPEPFEPQLFDDPTEAVDCLEALYERNTRFLCEGFEGLGKSGRPLTRFRACYPQVSIETSSFGHVDSRLSFGYVSAPGVYTTTITRPKLFRHYLKEQLGHLMRNHGVGVTVSESSTPIPLHFAFGEGAHVEASAAESIDIPLRDLFDAPDLTTTDDEIANGSYEPGPGEPSPLAPFTAQRIDYSLARLSHYTATSARHFQNFVLFTNYQFYVDEFCAWARQQMAEGGNGYTAFIEPGNITTPAGADRPDADYSLARLPQMPAYHLKKKGHGGITLVNIGVGPSNAKTITDHIAVLRPHVWLMLGHCAGLRNSQRLGDYVLAHAYMREDHVLDDDLPVWIPLPALAEVQVALQDAVAEVTGYKGYDLKQIMRTGTVATIDNRNWELRDQRGPVKRLSQARAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRTQVSQHLKIGILALQKLAAMPPEKLHSRKLRSFYETSFQ
>NZ_CP019584.1|WP_003527320.1|1110108_1110429_-|YnfA-family-protein
MPAYAIYFLAALAEITGCFAFWSWLRLGKSALWLIPGMASLALFAWLLTMVDAAAAGRTYAAYGGVYIVASLSWLWLAEGVRPDHWDMTGAAVALAGSAIILAGPR

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Crispr_ID: NZ_CP019584_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019584_3

2064195-2064307

Orphan

Consensus_repeat	Method
CCCTCATTCCTGTGCTTGTCACAGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019584_3

>merge|NZ_CP019584|3|2064195-2064307|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAATGAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCTCCCTCATTCCTGTGCTCGTCACAGGAAT

>NZ_CP019584|3|3|2064195-2064307|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAAT	GAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCT
CCCTCATTCCTGTGCTCGTCACAGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019584.1\|WP_003534106.1\|2052907_2053552_+\|autoinducer-synthase	unknown	unknown	gnl\|CDD\|226430
NZ_CP019584.1\|WP_017264764.1\|2067918_2068314_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP019584.1\|WP_010969521.1\|2073956_2075852_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225536
NZ_CP019584.1\|WP_003535070.1\|2068449_2069823_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662
NZ_CP019584.1\|WP_088895771.1\|2065119_2066853_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NZ_CP019584.1\|WP_088895770.1\|2054870_2055554_-\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NZ_CP019584.1\|WP_017263383.1\|2058335_2059358_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NZ_CP019584.1\|WP_003535076.1\|2072325_2073021_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_CP019584.1\|WP_003534093.1\|2062149_2064069_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP019584.1\|WP_010969510.1\|2057044_2058238_-\|phytanoyl-CoA-dioxygenase	unknown	unknown	gnl\|CDD\|227609
NZ_CP019584.1\|WP_003535074.1\|2071671_2072214_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NZ_CP019584.1\|WP_010969513.1\|2060198_2061881_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP019584.1\|WP_010969512.1\|2059368_2060196_-\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NZ_CP019584.1\|WP_010969519.1\|2070055_2071447_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|213618
NZ_CP019584.1\|WP_003534108.1\|2052013_2052751_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NZ_CP019584.1\|WP_010969520.1\|2073240_2073924_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP019584.1\|WP_010969509.1\|2055851_2056673_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180462
NZ_CP019584.1\|WP_010969515.1\|2064695_2065118_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP019584.1\|WP_010969517.1\|2066994_2067897_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019584.1\|WP_010969507.1\|2053719_2054847_+\|DUF2865-domain-containing-protein	unknown	unknown	gnl\|CDD\|371363

Protein	Function_ID	Function_description	E-value
NZ_CP019584.1\|WP_003534106.1\|2052907_2053552_+\|autoinducer-synthase	gnl\|CDD\|226430	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.55042e-97
NZ_CP019584.1\|WP_017264764.1\|2067918_2068314_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	2.27738e-43
NZ_CP019584.1\|WP_010969521.1\|2073956_2075852_-\|murein-L,D-transpeptidase	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP019584.1\|WP_003535070.1\|2068449_2069823_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NZ_CP019584.1\|WP_088895771.1\|2065119_2066853_+\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	0
NZ_CP019584.1\|WP_088895770.1\|2054870_2055554_-\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	3.73951e-110
NZ_CP019584.1\|WP_017263383.1\|2058335_2059358_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	2.637e-88
NZ_CP019584.1\|WP_003535076.1\|2072325_2073021_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.21528e-117
NZ_CP019584.1\|WP_003534093.1\|2062149_2064069_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.21123e-140
NZ_CP019584.1\|WP_010969510.1\|2057044_2058238_-\|phytanoyl-CoA-dioxygenase	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	4.07293e-103
NZ_CP019584.1\|WP_003535074.1\|2071671_2072214_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	3.19008e-64
NZ_CP019584.1\|WP_010969513.1\|2060198_2061881_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP019584.1\|WP_010969512.1\|2059368_2060196_-\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	1.73907e-62
NZ_CP019584.1\|WP_010969519.1\|2070055_2071447_-\|glutathione-disulfide-reductase	gnl\|CDD\|213618	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. [Energy metabolism, Electron transport].	0
NZ_CP019584.1\|WP_003534108.1\|2052013_2052751_+\|transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	3.50703e-21
NZ_CP019584.1\|WP_010969520.1\|2073240_2073924_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.43772e-103
NZ_CP019584.1\|WP_010969509.1\|2055851_2056673_-\|SDR-family-oxidoreductase	gnl\|CDD\|180462	PRK06198, PRK06198, short chain dehydrogenase; Provisional.	7.66456e-165
NZ_CP019584.1\|WP_010969515.1\|2064695_2065118_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	2.76293e-23
NZ_CP019584.1\|WP_010969507.1\|2053719_2054847_+\|DUF2865-domain-containing-protein	gnl\|CDD\|371363	pfam11064, DUF2865, Protein of unknown function (DUF2865). This bacterial family of proteins has no known function.	1.36883e-30

>NZ_CP019584.1|WP_003534093.1|2062149_2064069_+|LTA-synthase-family-protein
MARIDSAVSSSQVYADGESSSARYTRTLSGARSALFTLLIAIALVFTVEVIVRWSWPDTVAYFADPMRPAWTTVAVFFLAMLGVDALFGREHKAALLIAPLAVVPAFISQQKQVFLSDPLYPTDFLFGRQIMELMPVLVKDRPWTAVGVVAGLIAAIVVGALLLRFAWQNFPKLTRRERLMRIAFALPLLVAFWNIMDYNQFSWIRDRLRVIPIMWDQTENYRHNGFALAFAINLPMANVNAPAGYMADAIDRIPVKPLPAGTTHRGKPDVIVLMSESFWDPTRLPKVKLTPDPMPTIRELQGGNVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRNPIPSLATFFRGEGYVSRAIHPFQGWFWNRTAVYKAFGFDMFRSEENMPAMQKRGIFASDESLTKEIIRQADEVEDPFFFFAVTLQGHGPYEANRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDSLKMLMDWAKERDRETIIVLFGDHLPPLNTVYSSTGYMKGITAERKGPKDQMKAEHETPLVVWSNKTGPKKNIGTISPAFLSYQILKQAGYEHPYYTGFLGKVYDHYRVLDRYMLIRKNGKDVADWLRQPKVPASLRDYRFLQHDMMFGKRYSTERFFKSHAELYSAGL
>NZ_CP019584.1|WP_010969513.1|2060198_2061881_-|NAD+-synthase
MTAQKAAPSTLRIAVAQLNPTVGDIAGNVAKAREARTAAAREGADLLLLTELFISGYPPEDLVLKPAFLKACEQAVEKLAAETADGGPGVVIGFPRQAAGLRHNSVAVLDGGRVIAIRDKVDLPNYGEFDEKRVFDAGEMPGPVNFRGVRIGIPVCEDIWGDLGVCETLAESGAEILLSPNGSPYYRGKVDVRHQVVLRQVIETGLPMIYANQLGGQDELVFDGASFAFNADKSLAFQMSQFEEAVAVSEWKRGAGGWISANGLKSRIPEGEEADYRACMLGFRDYVNKNGFRNVVLGLSGGIDSAICTALAVDALGEERVRTVMLPYRYTSRESLRDAEACAKALGCRYDIVAIEEPVEGFLSALADTFEGTEAGITEENLQSRTRGTILMAISNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYALARWRNGTVPPGALGPSGEVIPQNIIDKAPSAELRPDQTDQDSLPPYPVLDDILECLVEKEMSTEEIVARGHEEATVHRIEHLLYIAEYKRRQSAPGVKITRKNFGRDRRYPITNRFRDRG
>NZ_CP019584.1|WP_010969512.1|2059368_2060196_-|TolB-family-protein
MRSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYEPEE
>NZ_CP019584.1|WP_017263383.1|2058335_2059358_+|LacI-family-transcriptional-regulator
MAHPFLVKDIAFQAGLSTATVDRVLNGRRGVRQQTVMRVNAAIRELERQQAGLEVQGRKYAVDVVMEAPERFTEAVRKAFESEAATFMPTVFRSRFHFAETMRPQDISQLLDRIRLRGTDGVVLKAPDVPEIAAAVARLENAGVAVVTLVTDLPHSSRTAYAGADNRAAGETAAYLIGERFADRPATVLVTISSSRFRGEEEREIGFRRVLREKYPHIGVVEISEGHGRNEETGALALKAIASHPEINAAYSIGGGNRAVLDAFGQLQRGCVLFVAHDLDEDNLDLLRQGLVQFVLHHDLKTDVRMAFHAVLERRGALRASEKRHLSAAEVITPYNLPRI
>NZ_CP019584.1|WP_010969510.1|2057044_2058238_-|phytanoyl-CoA-dioxygenase
MKTDNPARARLERVWLNEAACDIEEFRAAVEHRVSLADYPHAADCQKNILIYDSARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVANLLQVSSAFGRAMETVDREHMCVVLFPALKVLAAGGKLTQDEIANAVAACAEGYSFPTNLDRDPPVGGLAPRTQAQLMHEALAGEWSVEAFAEALADQAAKKLS
>NZ_CP019584.1|WP_010969509.1|2055851_2056673_-|SDR-family-oxidoreductase
MSTDHARLDGKIAIVTGGTQGLGATIAALFAERGAAGVVICGRNAAKGEAKAAEIAAATGSKVVYVPADLERVEDARAVAAACDRAFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEVIKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHDAPANWLEKAAASQPFGRLVDPAEVARACAYLSSAESGLMTGSVICFDQSIWGAYDASPHPEAPL
>NZ_CP019584.1|WP_088895770.1|2054870_2055554_-|5,6-dimethylbenzimidazole-synthase
MLPDPNGCLTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGVRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
>NZ_CP019584.1|WP_010969507.1|2053719_2054847_+|DUF2865-domain-containing-protein
MSASPKVASKIRRIAAVLVPLALAAAGPAAASGVCERLSARLAGLPTGFTTNASLRDFTGAVSRQNIELRRAKNDRRRMECSSDSVVVIGGDDEAACAELDDTIARMEASLRQLKAQRRHLIGGGDDDVRRRILAAMELNGCSGAPREGWDAGSAEGQFASAADGTEVHRNILRDLPPDSGAYPLLLDAPRAELPLTDDDFAGSLRTMCVRTCDGAFFPISSHATPADFGRDADLCRARCPGAETELYYHVLATEEADQMVSATTGRPYTDLPTAFAYRARSVGSPGICGCGIPDPATDANGQKAVSAGKLTVVSPSVITIGSEKKAPAKPIAERPYDPAKNKVRVVGPTFLPQEESAIDLKHPLGPRYQPLQEN
>NZ_CP019584.1|WP_003534106.1|2052907_2053552_+|autoinducer-synthase
MIRIVNGNGRSQHPQAIDEMFRLRKRVFHDFLKWDVKTEGDWEIDHYDKANPLYVMSYSPDTGKIRGSLRLLPTLGPNMLDDTFPILLGDNPEIRSASVWESSRFCIDPEISQDRASNQVTIAAAELMCGVGEMSLASGISHIVTVTDVFLERMFRRMGCPGERIADPHRIGSVHAVAIAWEVSRNLLETMKAVASIEGTVLDRPMSLETARAA
>NZ_CP019584.1|WP_003534108.1|2052013_2052751_+|transcriptional-regulator
MANQQAVLNLLDIVEYGGCADPERFFALMRRTFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLYRIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALIPTI
>NZ_CP019584.1|WP_010969515.1|2064695_2065118_+|pilus-assembly-protein
MSVFNRLLASRKGAAAIEFAIIAPLFFMCVLTLIAYGIYLSAAHSIQQVAADAARTAIAGLSLEERERLATDYIRRTTMNQTFIDSSRMNVTVRDDANNTNQFTVTISYDASDLPIWKLFTFALPGEQIERYATIRVGGI
>NZ_CP019584.1|WP_088895771.1|2065119_2066853_+|hypothetical-protein
MHGATTAFRRCLKSRTGNIGVSAALVMPLVVASMGLGIDYGYLTLQRRELQSVADLASIAAAADVSSAQEAVLAHFRSNDLGFAVSTPSGLMTVDGKLLPNDVETAAKGVATIVRGRYVPDPAIDAGQRFIRGALPADAVQVTLEKKGDIYLAALFSELPDLSVIGTAASSKIAAFSVGSRLASLNGGLLNAILGQMLGTNIALKVMDYEALIDADIDIQPFLKIIATRLSLTAASYEDVLTAELTVPQLLGSLRLVQGLSGTVTSALKTVELATAGNKQTLTLAQILNIDPKKSLGVDAGSDWAMKVSALQIVSAAAVIANGEHQIALDAVAGLPGIASVKVRLAIGEPPLETPSHRLGSPGAAVRTAQTRLAVEVVIDGLAALAGTRIRLPIYVELAHAEAKLSDIRCYGGTPENAAVIIDAVPGVAEIALGDVDPTVLSSFSSDARVTRARLLDGLIKIDGIAHVESKNLQPSRLAFSPAEVSSRTIKSVSTRDILSSTTRTLLGNLDAQINVGGLLSIGSPTLLQQALAQTLGAVTAPVDQLLYNLLLLVGVRVGEADVRVTGVKCQRPVLVQ
>NZ_CP019584.1|WP_010969517.1|2066994_2067897_+|hypothetical-protein
MQRVAEKGSSEQQVPTGLTVGDLVRNPNFPQILQAGARTLIALNDLFPRVARLVASHQKWMLTQAAYSLHLERDVNNPESGITAARLLKFMRDTGGASRNTAAAFLAELVAYKMLQPASGGRTKRARPLEPTEVSETAMRLWFKSQMSTIDLLDGGTRVERVEADKSIFERAQPLAARRLLSDSRWTTPPKGVAIFVWSESGGVILDDLMTRVSEFAPMDGKVWVEVSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEYVSWQAVKIEALASAYDQASDWAA
>NZ_CP019584.1|WP_017264764.1|2067918_2068314_-|GFA-family-protein
MEINEGGCLCGAVRFKTRGKLRELIFCHCSQCRKQTGLYYAATNVLDREMEVEGVENVTWYRSSNEARRGFCRYCGSALFWKADGLDYTSILAGTFDGSVALEPGYHLFCADKGHYYDISDDLPRFAGSRP
>NZ_CP019584.1|WP_003535070.1|2068449_2069823_-|3-deoxy-7-phosphoheptulonate-synthase-class-II
MAQTWTPNSWRQKPIQQVPDYPDLAVLDSVEARLAKYPPLVFAGEARRLKSALANVAEGRGFLLQGGDCAESFAEHGADTIRDFFRAFLQMAVVLTFGAQQPVVKVGRIAGQFAKPRSSGVEKQGDVTLPSYRGDIINGIEFTEEARVPNPERQVMAYRQSAATLNLLRAFAMGGYANLENVHQWMLGFVKDSPQAERYRKLADRISETMDFMKAIGITAENHPSLRETDFFTSHEALLLGYEQALTRVDSTSGDWYATSGHMIWIGDRTRQPDHAHIEYCRGIKNPLGLKCGPSLTADGLLELIDILNPANEAGRLTLICRFGHDKVAEHLPRLIRAVEREGKKVVWSCDPMHGNTITLNNYKTRPFERILSEVESFFQIHRAEGSHPGGIHIEMTGNDVTECTGGARALSGDDLADRYHTHCDPRLNADQALELAFLLAERMKGGRDEKKMVVNG
>NZ_CP019584.1|WP_010969519.1|2070055_2071447_-|glutathione-disulfide-reductase
MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGERVG
>NZ_CP019584.1|WP_003535074.1|2071671_2072214_-|DUF2059-domain-containing-protein
MNKFAGLARTFATAAILVSVSVPAVRAQDVTEDQIKAARATIAALGVTNSFDNILPNLAERLKNTLIQASPNHQELITATVDEKALSLAGRRSDLEREAATIYAKTFTVEELNAIADFYNSTAGKKLLNDGPIASREMLKAADIWAAGVSRDLTSEATKSLDEKIGNAPAANAGAAAPAQ
>NZ_CP019584.1|WP_003535076.1|2072325_2073021_-|ribose-5-phosphate-isomerase-RpiA
MDARQMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASGFQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGRIPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEGARTLTAS
>NZ_CP019584.1|WP_010969520.1|2073240_2073924_+|phosphoglycolate-phosphatase
MSLPLVVFDLDGTLVDTAPDLVASLNHAVTQAGIEPVTYADLTHLVGHGARAMIERTFALRGRTIAEEELTWQMKEFVDFYHGSMPGESLPYPGLIEALDRLQDAGLKLAVCTNKPEMLAKRLLEGLGLLGRFAAISGGDTFTVRKPHADHLLSTVSNAGGMAERAVMVGDSLNDVLVARNASVPSIVVPFGYSDVPIESLLPDRIIGHFDELTPDLVETVLSRKPK
>NZ_CP019584.1|WP_010969521.1|2073956_2075852_-|murein-L,D-transpeptidase
MRIIKSAAIVTLMSGCVVATMDVQPASAITFMDFIRGGKKRDVQEQVQPRRQLPGVDMFAPQRLDQKAAKPPRITGPRYYTYKAEPLRRIATDRLVDPVVTGSVLNGALPPMLRSPLADARQFLPEVDVRAPAEVAKAVENFYGTRTDFLWIEGTGVSGRAKAALGVLSDAAKVGLDPLDYAVIVPPEDFDRGDMIAREKDLVRFEIAMSAAVLTYVQDTVRGRIDPNRISGYHDFKRKNVDLLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGGRVVPSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLGVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFDDVYERDMYMNRAFEATRKARSLEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1421173 : 1453841

Rhizobium_phage(14.29%)

integrase,portal,terminase,tail,capsid

attL 1414780:1414795|attR 1440745:1440760

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1414780:1414795	attL	NA	NA	NA	NA
WP_157738172.1\|1421173_1422298_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_088895631.1\|1422269_1422452_-	hypothetical protein	NA	NA	NA	NA
WP_088895632.1\|1422448_1422790_-	hypothetical protein	NA	NA	NA	NA
WP_088895633.1\|1422828_1423041_+	hypothetical protein	B4UTV0	Rhizobium_phage	2.3e-13	50.0
WP_088895634.1\|1423043_1423232_-	hypothetical protein	NA	NA	NA	NA
WP_157738173.1\|1423228_1423402_-	hypothetical protein	NA	NA	NA	NA
WP_088895635.1\|1423398_1423917_-	hypothetical protein	NA	NA	NA	NA
WP_088895636.1\|1423909_1424248_-	hypothetical protein	NA	NA	NA	NA
WP_088895637.1\|1424244_1424820_-	hypothetical protein	NA	NA	NA	NA
WP_157738174.1\|1424847_1425324_-	hypothetical protein	A0A2I2MUH3	uncultured_Caudovirales_phage	1.9e-39	50.4
WP_088895640.1\|1425326_1425671_-	HNH endonuclease	NA	NA	NA	NA
WP_088201973.1\|1425671_1425851_-	hypothetical protein	NA	NA	NA	NA
WP_088895641.1\|1425847_1426276_-	hypothetical protein	NA	NA	NA	NA
WP_088895642.1\|1426285_1426561_-	hypothetical protein	NA	NA	NA	NA
WP_088201976.1\|1426561_1427074_-	DNA repair protein Rad52	A0A1B1IQW3	uncultured_Mediterranean_phage	2.4e-24	48.5
WP_157738175.1\|1427070_1427748_-	hypothetical protein	X2CYL5	Brucella_phage	1.4e-32	38.2
WP_157738176.1\|1427747_1427891_-	hypothetical protein	NA	NA	NA	NA
WP_153529017.1\|1428036_1428213_-	hypothetical protein	NA	NA	NA	NA
WP_088895644.1\|1428212_1428455_-	hypothetical protein	A0A0U2BX35	Paracoccus_phage	4.8e-07	43.0
WP_088895645.1\|1428451_1428784_-	hypothetical protein	NA	NA	NA	NA
WP_088895646.1\|1428801_1428984_-	hypothetical protein	NA	NA	NA	NA
WP_088895647.1\|1429021_1429303_-	hypothetical protein	K7PHA5	Enterobacterial_phage	2.6e-20	53.8
WP_088895648.1\|1429302_1429485_-	hypothetical protein	NA	NA	NA	NA
WP_088895649.1\|1429647_1429965_+	hypothetical protein	NA	NA	NA	NA
WP_157738177.1\|1430451_1430664_+	hypothetical protein	NA	NA	NA	NA
WP_088202193.1\|1430660_1431011_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_088895650.1\|1431115_1431334_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_088895651.1\|1431330_1431798_+	hypothetical protein	NA	NA	NA	NA
WP_157738178.1\|1431794_1432082_+	hypothetical protein	NA	NA	NA	NA
WP_088895653.1\|1432078_1432324_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_088895654.1\|1432316_1432511_+	hypothetical protein	NA	NA	NA	NA
WP_088895656.1\|1432916_1433264_+	hypothetical protein	NA	NA	NA	NA
WP_088895657.1\|1433260_1434073_+	site-specific DNA-methyltransferase	B4UTY5	Rhizobium_phage	5.1e-53	52.5
WP_088895659.1\|1434272_1434626_+	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
WP_088895660.1\|1434627_1435008_+	hypothetical protein	NA	NA	NA	NA
WP_157738179.1\|1435025_1435190_+	hypothetical protein	NA	NA	NA	NA
WP_088895663.1\|1435379_1435589_+	response regulator transcription factor	NA	NA	NA	NA
WP_088895664.1\|1435585_1435858_+	hypothetical protein	NA	NA	NA	NA
WP_088895665.1\|1435854_1436325_+	hypothetical protein	NA	NA	NA	NA
WP_088895666.1\|1436321_1436714_+	hypothetical protein	NA	NA	NA	NA
WP_088895667.1\|1436710_1436914_+	hypothetical protein	NA	NA	NA	NA
WP_088895668.1\|1436910_1437510_+	hypothetical protein	NA	NA	NA	NA
WP_088895670.1\|1438308_1438596_+	hypothetical protein	A0A088FAU1	Sulfitobacter_phage	1.1e-13	51.2
WP_088895671.1\|1438582_1439884_+\|terminase	terminase	A0A088F6U9	Sulfitobacter_phage	1.7e-159	63.8
WP_088895672.1\|1439887_1441957_+\|portal	phage portal protein	I6NV36	Burkholderia_virus	7.9e-34	23.8
1440745:1440760	attR	NA	NA	NA	NA
WP_088895673.1\|1442036_1442999_+	hypothetical protein	NA	NA	NA	NA
WP_088895674.1\|1443151_1444252_+\|capsid	N4-gp56 family major capsid protein	A0A1Y0SUD3	Pseudomonas_phage	5.7e-39	30.4
WP_088895675.1\|1444265_1444664_+	hypothetical protein	NA	NA	NA	NA
WP_157738180.1\|1444713_1444878_+	hypothetical protein	NA	NA	NA	NA
WP_088895676.1\|1444852_1445032_+	hypothetical protein	NA	NA	NA	NA
WP_088895677.1\|1445028_1445736_+	hypothetical protein	NA	NA	NA	NA
WP_088895678.1\|1445732_1447199_+	hypothetical protein	D6PEY0	uncultured_phage	1.5e-50	32.3
WP_088895679.1\|1447195_1447633_+	hypothetical protein	NA	NA	NA	NA
WP_088895680.1\|1447625_1448594_+\|tail	tail fiber domain-containing protein	F8TUS6	EBPR_podovirus	2.8e-05	25.5
WP_088895681.1\|1448593_1449904_+	hypothetical protein	NA	NA	NA	NA
WP_157738181.1\|1450182_1451952_+	hypothetical protein	NA	NA	NA	NA
WP_088895683.1\|1452902_1453841_+\|tail	tail fiber protein	D5LGZ0	Escherichia_phage	1.3e-28	34.4

DBSCAN-SWA_2

1658068 : 1669317

uncultured_Mediterranean_phage(80.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969277.1\|1658068_1659103_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6
WP_086017693.1\|1659196_1660015_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.7e-32	34.7
WP_010969279.1\|1660007_1660727_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.8e-40	45.2
WP_010969280.1\|1660791_1661901_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	37.6
WP_003534564.1\|1661995_1662202_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.2e-08	65.9
WP_010969282.1\|1662275_1662923_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534569.1\|1662919_1663762_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_017264141.1\|1663898_1665182_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.1e-101	47.0
WP_010969283.1\|1665209_1665980_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-22	30.9
WP_014526709.1\|1665976_1666630_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.6e-15	34.6
WP_010969285.1\|1666801_1667455_+	biotin transport regulator	NA	NA	NA	NA
WP_088895698.1\|1667778_1669317_+	LysM peptidoglycan-binding domain-containing protein	I3PV24	Clostridium_phage	1.0e-14	32.8

DBSCAN-SWA_3

1825949 : 1865362

Rhizobium_phage(36.36%)

portal,holin,terminase,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003533217.1\|1825949_1826675_-\|holin	phosphatidylcholine/phosphatidylserine synthase	NA	NA	NA	NA
WP_003533216.1\|1826673_1826856_+	hypothetical protein	NA	NA	NA	NA
WP_013844473.1\|1827018_1828230_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA
WP_003533213.1\|1828197_1829160_-	AEC family transporter	NA	NA	NA	NA
WP_003533210.1\|1829299_1830043_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_088895842.1\|1831287_1831743_+	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	8.1e-32	53.7
WP_088895708.1\|1831806_1831995_+	hypothetical protein	NA	NA	NA	NA
WP_157738185.1\|1832021_1832342_-	hypothetical protein	B4UTU3	Rhizobium_phage	5.3e-14	43.2
WP_088895843.1\|1832915_1833185_-	HNH endonuclease	NA	NA	NA	NA
WP_088895711.1\|1833269_1833602_-	hypothetical protein	NA	NA	NA	NA
WP_088895712.1\|1833732_1833969_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_088895713.1\|1834161_1834638_+	hypothetical protein	NA	NA	NA	NA
WP_157738186.1\|1834634_1834961_+	hypothetical protein	NA	NA	NA	NA
WP_088197122.1\|1834957_1835185_+	hypothetical protein	NA	NA	NA	NA
WP_088895715.1\|1835181_1835769_+	hypothetical protein	A0A141GEZ4	Brucella_phage	9.8e-14	51.6
WP_088895716.1\|1835860_1836028_+	hypothetical protein	NA	NA	NA	NA
WP_088895717.1\|1836204_1836483_-	hypothetical protein	A0A076G717	Sinorhizobium_phage	1.0e-16	57.0
WP_088895718.1\|1836629_1837604_-	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	2.3e-124	66.9
WP_088895719.1\|1837707_1838346_-	hypothetical protein	NA	NA	NA	NA
WP_088895720.1\|1838769_1839222_+	hypothetical protein	NA	NA	NA	NA
WP_088895721.1\|1839218_1839401_+	hypothetical protein	A0A291AUP5	Sinorhizobium_phage	2.1e-15	64.0
WP_127642211.1\|1839518_1839962_-	hypothetical protein	NA	NA	NA	NA
WP_088895722.1\|1839996_1840401_-	hypothetical protein	NA	NA	NA	NA
WP_157738187.1\|1840708_1840927_+	hypothetical protein	NA	NA	NA	NA
WP_088895723.1\|1841376_1841754_-	hypothetical protein	NA	NA	NA	NA
WP_157738188.1\|1842319_1842511_+	hypothetical protein	NA	NA	NA	NA
WP_088895725.1\|1842561_1842948_-	hypothetical protein	NA	NA	NA	NA
WP_088895726.1\|1843000_1843237_+	hypothetical protein	NA	NA	NA	NA
WP_088895727.1\|1843247_1844174_-	glycoside hydrolase family protein	A0A0M5M782	Salmonella_phage	1.3e-12	39.7
WP_157738189.1\|1844338_1846066_+	ATP-binding protein	NA	NA	NA	NA
WP_088895729.1\|1848741_1850850_-	hypothetical protein	B4UTR1	Rhizobium_phage	0.0e+00	95.3
WP_088895730.1\|1850865_1851183_-	hypothetical protein	B4UTR0	Rhizobium_phage	2.3e-54	95.2
WP_088895731.1\|1851330_1851936_+	hypothetical protein	S5MMK8	Bacillus_phage	3.5e-14	41.3
WP_088895732.1\|1851925_1852498_-	hypothetical protein	B4UTQ9	Rhizobium_phage	6.7e-100	97.4
WP_088895733.1\|1852487_1852652_-	hypothetical protein	B4UTQ8	Rhizobium_phage	2.6e-17	89.1
WP_088895734.1\|1852661_1853366_-	hypothetical protein	B4UTQ7	Rhizobium_phage	2.8e-124	91.5
WP_088895735.1\|1853375_1855637_-	tape measure protein	A0A141GEX2	Brucella_phage	1.7e-37	61.8
WP_157738190.1\|1855684_1855975_+	hypothetical protein	NA	NA	NA	NA
WP_157738191.1\|1855971_1856136_-	hypothetical protein	NA	NA	NA	NA
WP_088895737.1\|1856192_1856549_-	gene transfer agent family protein	B4UTQ4	Rhizobium_phage	7.3e-12	37.4
WP_088895738.1\|1856548_1856986_-	hypothetical protein	NA	NA	NA	NA
WP_088895739.1\|1857058_1857475_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_088895740.1\|1857474_1857957_-	HK97 gp10 family phage protein	A0A141GEW6	Brucella_phage	3.4e-20	42.3
WP_088895741.1\|1857953_1858304_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_088895743.1\|1858454_1858865_-	hypothetical protein	B4UTP8	Rhizobium_phage	7.3e-32	58.3
WP_088895744.1\|1858907_1859252_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	5.2e-07	37.4
WP_088895745.1\|1859255_1859597_-	hypothetical protein	NA	NA	NA	NA
WP_157738192.1\|1859589_1859760_-	hypothetical protein	NA	NA	NA	NA
WP_088895746.1\|1859810_1861022_-\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	1.1e-107	54.9
WP_088895747.1\|1861046_1862168_-	S49 family peptidase	A0A0K2FHL6	Achromobacter_phage	7.3e-34	37.9
WP_088895748.1\|1862178_1863426_-\|portal	phage portal protein	A0A1P8DTI5	Proteus_phage	2.5e-75	41.1
WP_088895749.1\|1863439_1865362_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	2.2e-163	51.2

DBSCAN-SWA_4

2556278 : 2565913

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003532953.1\|2556278_2558333_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6
WP_107010522.1\|2558421_2558547_-	hypothetical protein	NA	NA	NA	NA
WP_013844736.1\|2558765_2559800_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_010969853.1\|2559823_2561011_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	9.2e-35	27.8
WP_010969854.1\|2561270_2563181_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_010969855.1\|2563226_2565230_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_003532937.1\|2565463_2565913_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4

DBSCAN-SWA_5

2597679 : 2647238

Klosneuvirus(14.29%)

transposase,protease,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969874.1\|2597679_2598399_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003534512.1\|2598454_2598760_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_010969876.1\|2598990_2600094_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_003534506.1\|2600566_2601022_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010969877.1\|2601018_2601489_+	MaoC family dehydratase	NA	NA	NA	NA
WP_003534501.1\|2601534_2602077_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-35	45.5
WP_010969878.1\|2602251_2602437_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_017263272.1\|2602455_2603715_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	2.5e-51	42.1
WP_010969880.1\|2603711_2604344_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_003534495.1\|2604340_2604964_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_010969882.1\|2605322_2606336_+	MoxR family ATPase	NA	NA	NA	NA
WP_010969883.1\|2606339_2607260_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010969884.1\|2607256_2610070_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_010969885.1\|2610080_2612150_+	membrane protein	NA	NA	NA	NA
WP_010969886.1\|2612164_2612716_-	N-acetyltransferase	NA	NA	NA	NA
WP_010969887.1\|2612973_2613966_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010969888.1\|2614131_2614338_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_088895793.1\|2614400_2615309_+	cell filamentation protein Fic	NA	NA	NA	NA
WP_010969890.1\|2615433_2615925_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003534453.1\|2616007_2616910_+	metallophosphoesterase	NA	NA	NA	NA
WP_010969891.1\|2617103_2617619_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003534449.1\|2617622_2618450_+	anti-sigma factor	NA	NA	NA	NA
WP_003534446.1\|2618572_2619001_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_010969893.1\|2618997_2619249_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_010969894.1\|2619386_2621096_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_003534440.1\|2621196_2621334_-	hypothetical protein	NA	NA	NA	NA
WP_003534438.1\|2621567_2622155_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3
WP_010969897.1\|2624194_2625106_-	aminoglycoside phosphotransferase APH(3')	Q75ZG1	Hepacivirus	8.6e-17	30.2
WP_010969898.1\|2625137_2625602_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	47.1
WP_010969899.1\|2625598_2626519_-	cation transporter	NA	NA	NA	NA
WP_010969900.1\|2626687_2628877_-	anthranilate synthase	NA	NA	NA	NA
WP_010969901.1\|2629150_2631382_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_088895794.1\|2631505_2632492_+	extensin family protein	NA	NA	NA	NA
WP_088895847.1\|2632652_2634332_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_010969904.1\|2634422_2635646_-	DUF2333 family protein	NA	NA	NA	NA
WP_017263276.1\|2635649_2636939_-	hypothetical protein	NA	NA	NA	NA
WP_003537933.1\|2637122_2638286_+\|transposase	IS4-like element ISRm16 family transposase	NA	NA	NA	NA
WP_010969906.1\|2638463_2638868_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_010969907.1\|2638980_2640897_-	ATP-binding protein	NA	NA	NA	NA
WP_010969908.1\|2640900_2642049_-	hypothetical protein	NA	NA	NA	NA
WP_003535848.1\|2642110_2643199_-	hypothetical protein	NA	NA	NA	NA
WP_010969910.1\|2643359_2643947_-	thymidine kinase	A0A0K2FHC3	Enterobacter_phage	4.1e-52	54.7
WP_010969911.1\|2644233_2645190_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013844756.1\|2645346_2646192_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010969913.1\|2646188_2647238_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-20	33.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019586

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP019585

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP019584

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection