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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022247 Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome 4 crisprs csa3,DEDDh,cas3,DinG,cas9,cas1,cas2 0 0 9 0
NZ_CP022251 Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP022249 Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP022250 Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT2, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP022248 Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP022252 Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT4, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP022247
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022247_1 389270-389412 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022247_2 1645975-1646063 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022247_3 1953993-1954160 TypeII NA
2 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022247_4 2336584-2336667 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 426539 : 467468 32 Staphylococcus_phage(96.3%) tRNA NA
DBSCAN-SWA_2 579428 : 588581 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_3 926252 : 962637 48 Staphylococcus_phage(55.0%) portal,terminase,integrase,capsid,head,plate,transposase,holin,tail attL 943294:943311|attR 963986:964003
DBSCAN-SWA_4 1202953 : 1211423 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1416104 : 1431720 19 Staphylococcus_phage(46.15%) terminase,integrase attL 1408764:1408778|attR 1432623:1432637
DBSCAN-SWA_6 1444586 : 1450834 6 Streptococcus_phage(33.33%) transposase NA
DBSCAN-SWA_7 1482989 : 1493425 10 uncultured_Caudovirales_phage(66.67%) NA NA
DBSCAN-SWA_8 1830572 : 1843671 21 Staphylococcus_phage(86.67%) terminase NA
DBSCAN-SWA_9 2413662 : 2433599 17 Bacillus_phage(20.0%) protease,transposase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP022250
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 18849 17 uncultured_virus(25.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage