CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP022355	Paraphotobacterium marinum strain NSCS20N07D chromosome large, complete sequence	1 crisprs	DEDDh,cas3,DinG	0	2	2
NZ_CP022356	Paraphotobacterium marinum strain NSCS20N07D chromosome small, complete sequence	2 crisprs	csa3,DEDDh	7	1	1
NZ_CP022357	Paraphotobacterium marinum strain NSCS20N07D plasmid p1, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022355_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022355_1

359983-360194

Orphan

Consensus_repeat	Method
TGCCCCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP022355_1

>merge|NZ_CP022355|1|359983-360194|PILER-CR
TGCCCGGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCCGGGCACCATTTAAGTGCGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATTTAAATGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTC

>NZ_CP022355|1|1|359983-360194|PILER-CR
TGCCCGGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTC	GTGTCGGTGGTTCGATTCCGCCTCCGGGCACCATTTAAGTGCGCCGACT
TAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACC	AGTTCGATTCCGGTAGTCGGCACCATTTAAATGCCTCGATAGCTCAGTCGGTAGAG
CAGAGGATTGAAAATCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022355.1\|WP_089072806.1\|358609_359152_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP022355.1\|WP_089072816.1\|366472_366811_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP022355.1\|WP_089072804.1\|356634_357774_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP022355.1\|WP_089072808.1\|359608_359875_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP022355.1\|WP_089072814.1\|364575_365100_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP022355.1\|WP_089072810.1\|360923_361808_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|274810
NZ_CP022355.1\|WP_089072809.1\|360454_360904_+\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP022355.1\|WP_089072803.1\|356053_356638_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP022355.1\|WP_089072818.1\|371346_373194_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NZ_CP022355.1\|WP_089072811.1\|361826_363140_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
NZ_CP022355.1\|WP_089072813.1\|363650_364502_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|185673
NZ_CP022355.1\|WP_089072815.1\|365210_366440_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|274697
NZ_CP022355.1\|WP_089072799.1\|352624_353350_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP022355.1\|WP_089072801.1\|354310_354727_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP022355.1\|WP_089072812.1\|363136_363640_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP022355.1\|WP_089072817.1\|369876_371301_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP022355.1\|WP_089072807.1\|359040_359595_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|224115
NZ_CP022355.1\|WP_089072800.1\|353367_354318_+\|glutathione-synthase	unknown	unknown	gnl\|CDD\|235371
NZ_CP022355.1\|WP_089072802.1\|354734_355415_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NZ_CP022355.1\|WP_089072805.1\|357756_358506_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649

Protein	Function_ID	Function_description	E-value
NZ_CP022355.1\|WP_089072806.1\|358609_359152_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.95761e-78
NZ_CP022355.1\|WP_089072816.1\|366472_366811_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	3.74496e-56
NZ_CP022355.1\|WP_089072804.1\|356634_357774_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP022355.1\|WP_089072808.1\|359608_359875_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	8.44295e-47
NZ_CP022355.1\|WP_089072814.1\|364575_365100_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	3.01531e-83
NZ_CP022355.1\|WP_089072810.1\|360923_361808_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|274810	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. [Protein synthesis, tRNA and rRNA base modification].	4.41392e-125
NZ_CP022355.1\|WP_089072809.1\|360454_360904_+\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	6.62822e-71
NZ_CP022355.1\|WP_089072803.1\|356053_356638_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	1.26723e-97
NZ_CP022355.1\|WP_089072818.1\|371346_373194_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NZ_CP022355.1\|WP_089072811.1\|361826_363140_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	0
NZ_CP022355.1\|WP_089072813.1\|363650_364502_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|185673	cd00560, PanC, Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.	2.28513e-121
NZ_CP022355.1\|WP_089072815.1\|365210_366440_-\|ammonium-transporter	gnl\|CDD\|274697	TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.	0
NZ_CP022355.1\|WP_089072799.1\|352624_353350_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	1.1604e-90
NZ_CP022355.1\|WP_089072801.1\|354310_354727_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	9.5696e-57
NZ_CP022355.1\|WP_089072812.1\|363136_363640_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	1.55505e-57
NZ_CP022355.1\|WP_089072817.1\|369876_371301_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP022355.1\|WP_089072807.1\|359040_359595_+\|NUDIX-domain-containing-protein	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	3.93778e-37
NZ_CP022355.1\|WP_089072800.1\|353367_354318_+\|glutathione-synthase	gnl\|CDD\|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	0
NZ_CP022355.1\|WP_089072802.1\|354734_355415_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	1.18372e-107
NZ_CP022355.1\|WP_089072805.1\|357756_358506_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	6.0187e-100

>NZ_CP022355.1|WP_089072808.1|359608_359875_+|oxidative-damage-protection-protein
MSKTIYCVHLKKEAPSMSFQIYPGELGKKIYENISQEAWNKWQAKQTMLINEKKLNMMDPEHRKFLEKKMSEFLFDGKDIIIDGYQPK
>NZ_CP022355.1|WP_089072807.1|359040_359595_+|NUDIX-domain-containing-protein
MFGIKECKKSSSFKRKIWQLSIQLTPQTSNRIYTQGLIDLGALICTPRNVQCDQCPLQLNCYAFKTHKQLELPLNTKKAKKIKKDKYFIWCKQNDNILLEKRNKKDVWFGLWCLPEVSEDDLKNINYRLKGKISHKFTHYELLGHVIEVNNLKVKSTDNSKYFRSTSSIALPTPIKKFIKTNLD
>NZ_CP022355.1|WP_089072806.1|358609_359152_+|A/G-specific-adenine-glycosylase
MDIANTIIEWQLQHGRKDLPWQQNITPYKVLISEIMLQQTQVKTVIPYFQKWLRYFPTIDALAIAEEDKVLKLWEGLGYYSRARNLIKASKFILDEFGGKIPDDQEKLLSIPGVGPYTSGAILSFAFNKYGPIVDGNVNRLFSRFLALRNVKSHHHLKEKFGNYLFNLRLKHQTEFIHKD
>NZ_CP022355.1|WP_089072805.1|357756_358506_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MISKNNLKNQDVITPEYDSNGRLVRKIRSFVLREGRLTKGQELAIEQFWSLYGITYKESRIDFKNLFKNDNEVVLEIGFGMGSSLVQMALENPNKNFIGIEVHKPGVGSCIKQIEENNVKNLKVICHDAVEVLNSMIDDKSIDKFQIFFPDPWHKAKHHKRRIIQQAFVQLLLRKLKEGGTIHLATDWENYSEHMLEVLSSFKILRNLSQTNDFIERPNERPLTKFENRGIKLGHKVFDIKFQKSYKEL
>NZ_CP022355.1|WP_089072804.1|356634_357774_+|radical-SAM-family-heme-chaperone-HemW
MNKKPVSLYIHMPWCIKKCPYCDFNSHTINGDIPEKTYIEHLIKDLKNDIEEYNIYDRPVKTIFFGGGTPSLITPAGYDELLSGIKLLLPFKENIEITMEANPGTLEHKPFQEYINAGINRFSVGVQSFNNEHLNILGRIHSNQNAITALEELRELNVTSYNLDLMHGLPQQNIKQALSDLHTAIELNVPHISWYQLTIEPHTMFSSRPPTLPSDDILWLIYKEGIELLKDNGYEQYEISAFSKQNHACEHNLNYWEFGDYLGVGCGASGKITTNSKQVIRTEKVKHPKGYLEAKNNYIKFKSNVTGDDLVFEYFLNRCRLMNGFSKQDFEHKTGLKLDNLEPKLNIAQKKGLITYQSEFVTVTTLGHRYLNNLLELFI
>NZ_CP022355.1|WP_089072803.1|356053_356638_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MKTKIILATHNLGKKKEFEHLFENFDFELTSSVEMNISDVEETGQTFVENAIIKARHAAKISGLPSIADDSGLCVTSLNNQPGIYSARYAGDHGNNEKNIDLLLKNLKPFKDRRAFFKAVLVFMKHAEDPDPIIASAKWAGVIAEEPLGIKGHGYDPIFIPLGYHQTASEMDLNLKNQISHRAIAFKKLIELLK
>NZ_CP022355.1|WP_089072802.1|354734_355415_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MSSVKENINNILNYLTKLQTKKSKEVRIIAVSKKQPVEKISEAIESGLVNFGESYVQEAVKKIIHFSHVKQICWHFLGPIQSNKTKLIAEHFDWVQSVDRIKILEKLNHHRPNHLAPLNVLIQININDEASKSGIHKEELSKLIENVQKYRNLKLRGIMAIPRRENNPREQAYTFESLFNLFETHRKNNPDFNILSMGMSNDWEKAIHFGSNMVRIGTSIFGERDS
>NZ_CP022355.1|WP_089072801.1|354310_354727_+|Holliday-junction-resolvase-RuvX
MSNVLAFDFGMNNIGIATGNTDTKVAFPYKSLKAKNGIPNWDILGTILKEWDPSFIIVGLPLDLHGNFLPEITQKAKKFANRIHGRYGIKVIMHDERLTTVEAKSNLYQHHGFKKLDKDNIDNMSAVIILESWFEQNI
>NZ_CP022355.1|WP_089072800.1|353367_354318_+|glutathione-synthase
MMKFGIIMDPISNIKVSKDSNLKILLKAQERNYEIFYMELQDLYVEKGNPYALAKKIILKQNKESWFEFKETTRIPLSDLDVILMRKDPPFDIDYIYATYILDLAELKGTFVANKPQSLRDCNEKVYTSWFPKLTPETIITSNPYLIKDFHKTHKNIILKPLDGMGGASIFKVTENDPNLSVIIETLTNHGSAYCMAQEFIPDITLGDKRIIIINGEVMPYVLARIPAKGETRGNIAAGGTGVVQEISERDLNLAKEIAPILKQKGLFWVGLDVIGNKLTEINVTCPTCIVEIEQATGFSIADKILDSLEKKLKYE
>NZ_CP022355.1|WP_089072799.1|352624_353350_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MRIPRIYQKVELNVASEFELTPEASHYISKVLRLTVDSPITLFNGNNYIYQAKIIEIKNKSVKVHVNQSEYKNVESNLQIHLGQVISRGDKMDLTIQKAVELGVTSIYPLTSARCGVKLDQSRLKKKLLHWTKIAISACEQSGRNFVPKIHEVTSVNEWVNDSFSGAKICLEPSSSQTIKSLMIDQNLRLLIGPEGGFNDDEINLFQKSNFSNIILGKRILRTETAGFAAISALQTLYGDF
>NZ_CP022355.1|WP_089072809.1|360454_360904_+|RNA-polymerase-binding-protein-DksA
MPIIQKKKTLGILAAAGLEPYQVAPNEEYMNEKQLKHFRTILMAWKEQLKSEVERTVHQMQDEASNFPDPVDRAAQEEEFSLELRNRDRERRLIKKIDKTIQRIDDDDFGYCDSCGVEIGIRRLEARPTAELCIDCKTLAELKEKQMTG
>NZ_CP022355.1|WP_089072810.1|360923_361808_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MNTKVIYRGRFAPSPTGDLHLGSLTTALGSYLEAKANNGSWLLRIEDLDYFRIQPASIANILHTLELYGLEWDEEVLYQSKRIDIYREYINDIIGANKAYYCSCNRKRIKELGGIYDGYCKEKKRSPENASIRFLKHEVNSFSDRLKGIIFFSKDLAQENFIIQRKDGLPSYNLAVVVDDIYQGITEVVRGSDLENMTSHQIALYNYFELRAIKYVHLPVINNQNGFKLSKQHKAKSIPLDNIQYNLLKALKLLGLPTQKEMIYNSPQEILTWSIANWSLAKIPKVNINVSDTN
>NZ_CP022355.1|WP_089072811.1|361826_363140_+|polynucleotide-adenylyltransferase-PcnB
MNNSHPKSVEILNRNQHNISRKDISSNALKVLYRLSAENYEAYLVGGCVRDLLLGQKPKDFDIVTDATPEEIKKIFSNCRLIGKRFRLAHILFGREIIEVATFRGHHSATSTKNISKKSEKGMLIRDNIFGDINEDSERRDFTVNSLYYDIKTFSIRSSEHGLSDLKNRVIKLIGEPHTRYKEDPVRMLRAIRFSVKLNMSLSNETATPIKELVTLLSEIPGARLFDECNKLFHNGYGYKTYLSLREYDIFQQLFPQINDFLTEDHSSLTEKMIELSLISTDQRIKNQKRINPAFLYSCFLWYPLQSKLKEIKNDKSYASLSSYEQLQAAINWIIDKQIETISIPKRFTNTIRDIWYLQNKFLNRTPKRSLRLLEQPKFRAAFDFLEIRGIIEGGEIKDLAKWWDIFQQADESKANLMLQSLNHKKSKKGHKRKHKV
>NZ_CP022355.1|WP_089072812.1|363136_363640_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MKNIAYIGLGSNLDDPFKKTLTAINLLNNYHSKIRILDRSSFYSSTPLDNIPQEDFVNAVLKIETDHSPIELLDLLQSIELKMGRIRNKNMRWGPRVIDLDILLFNNDIINNNRLTIPHYDMKRRDFVIVPLFEIAPSLILPDGDLISDVMNNLQVNKLQKIKQTNS
>NZ_CP022355.1|WP_089072813.1|363650_364502_+|pantoate--beta-alanine-ligase
MQIVTTKNEVIKLSHKISLANQVIGFVPTMGNLHEGHLSLIREIKRHSDWVICSIFINPTQFNSQKDFETYPQTHQQDIELLKKENIDAIFMPSATEMYGKNLKLNTKIHVSPLANLLEGELRPGHFDGVATIVNKLFNIIKPNVSIFGEKDYQQLLIIKKMVTELDLPVQILSLPTKRNTNGLALSSRNNKLSITSLKKAENIFKVLNYLKTEIVSYNKKDYIALKFEAKELLRKHDIVLEELYFRDAGNLEEISIETNNVVILISCFLENVRLIDNIIFEI
>NZ_CP022355.1|WP_089072814.1|364575_365100_-|hypoxanthine-phosphoribosyltransferase
MNHKIEVFISSDRISKRILEIANEIDKHYKGSDNLILIGLLRGSYMFMSDLSKLIKTPHEIDFITASSYGAGTVSSGDVKILKDLDGDIKGKDIIIIEDIIDTGNTLSKVKEILSIRNPTSIKICTLLDKPSRREIAVSVDYIGFEIPDEFVVGMGLDLDQKYRHLPFVGKITE
>NZ_CP022355.1|WP_089072815.1|365210_366440_-|ammonium-transporter
MDITLDINGLKFAINTFFLLISGALVMWMAAGFAMLEAGMVRTKNTTEILTKNVCLYAIACTCFLIIGYNIMYVSNSEGGILPTFGFLIGEQSADATHALTADFFFQVVFAATAMSVVSGAVAERMKLWPFLIFSVILTSFIYPIEGYWTWGGGFLSKMGYVDFAGSGIVHLAGAAAALAGVIFLGAREGKYGKNGEINPIPGSNMPLATIGTLILWFGWFGFNGGSQLALASVSDATSIGLIFLNTNAAAATGAIGALILCKCVWKKVDLTMVLNGALGGLVAITADPASPSPMYAMGIGLIAGVLVVFSIILLDRLRLDDPVGAISVHGSCGILGLLLVPLSNSDANLMTQILGIIVIFAWVFLVSSIVWYTLKVTIGLRVGKSEEIDGLDAHDCGVDAYPEFINLK
>NZ_CP022355.1|WP_089072816.1|366472_366811_-|P-II-family-nitrogen-regulator
MKLISAIIKPFKLEDVKDSLSKIGIDGMTIMEVKGFGRQKGHTELYRGTEYNVDFLPKIKIEIAVHSDQVDSVINSITTSAHTGKIGDGKIFVYDVSNAVRIRTGEKDLEAI
>NZ_CP022355.1|WP_089072817.1|369876_371301_-|dihydrolipoyl-dehydrogenase
MSKEINAQVVVLGSGPGGYSAAFRCADLGLDTVLVEKYNTLGGVCLNVGCIPSKALLHVSKVIEEAKALGSHGVTFGSPEIDLDKIRSWKEKQVVGQLTGGLAGMAKMRKVKVVNGTGTFTSSNSLEVIGEEKTTINFKDAIIAAGSTPVTLPFIPHDDPRVWDSTDALALKEVPEKLLIMGGGIIGLEMGTVYHSLGSKVDVVEMFDQLIPAADKDIIKVFTKKISKKLNVMLETKVTSVEAKEDGIYVSMEGKKAPSDAQRYDAVLVAIGRKPNGKLIGAEKAGVTVDDRGFINVDKQMKTNVPNIYAIGDIVGNPMLAHKGVHEGHVAAEVISGKKHYFDPKVIPSIAYTEPEVAWVGQTEKEAKENKVNYEVAIFPWAASGRAIASDCSDGMTKLIFDKNSNRVIGGAVVGSNAGELLGEIGLAIEMGCDAEDLALTIHAHPTLHESVGLAAEVYEGSITDLPNAKAKKK
>NZ_CP022355.1|WP_089072818.1|371346_373194_-|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MAIEIKVPDIGADEVEVTEIMVKAGDVVTEDQSLITVEGDKASMEVPSPQAGTIKEILIKEGDKVETGSLIMYFADESVDVNTKKNEATEVDTNSSSLVEIHVPDIGGDEVEVTEIMVSIGDSVNEEQSLITVEGDKASMEVPAPVAGVVSDIKINVGDKVNTGSLIMFFSVNSNNVEDTDKNSVSENNASSVEIDVNVPDIGGDEVEVTDVMVSVGDTVDEEQSLITVEGDKASMEVPAPVKGKVTNILIKEGDKVSTGSLIMKFEVEGSSSNSAEKSNASEAVKSEKTVSKEKQSTPSSSNDFQENDAYVHASPVVRRLAREFGINLSKVKATGRKNRITKEDVQNYVKGAVQKLESGSGANGSELGLLPWPKVDFNKFGDTETKPLSRIKKISGANLHRNWVMIPHVTQWDNADITSLEAFRKEQNALQAKKKEGAVKITPLVFIMKAVAKALEEYPSFNSSLSDDGEHLIMKKYVNVGVAVDTPNGLVVPVFKDVNKKGIIELSSELMEISKKARAGKLTSSDMQGGCFTISSLGGIGGTAFTPIVNAPEVGILGVSKSEMKPVWNGKDFDARLMLPLSLSYDHRVIDGAEGARFITFLNKSLSDIRNLVM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	103805-103860	4	0.929
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	KU052038	Escherichia phage SerU-LTIIb, partial genome	3054-3109	4	0.929
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	LN997803	Escherichia coli phage phi467	15123-15178	4	0.929
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	NZ_CP023526	Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence	1911-1966	4	0.929
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	52075-52130	4	0.929
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	52081-52136	4	0.929
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	52086-52141	4	0.929
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	52085-52140	4	0.929
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	NZ_CP054057	Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence	85814-85869	5	0.911
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	296483-296538	5	0.911
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	13642-13697	5	0.911
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	MH494197	Escherichia phage CMSTMSU, complete genome	196769-196824	5	0.911
NZ_CP022355_1	1.2\|360120\|56\|NZ_CP022355\|PILER-CR	360120-360175	56	KU052038	Escherichia phage SerU-LTIIb, partial genome	1148-1203	6	0.893
NZ_CP022355_1	1.1\|360027\|49\|NZ_CP022355\|PILER-CR	360027-360075	49	NC_020866	Rhodovulum phage RS1 genomic sequence	147-195	10	0.796
NZ_CP022355_1	1.1\|360027\|49\|NZ_CP022355\|PILER-CR	360027-360075	49	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	75847-75895	10	0.796
NZ_CP022355_1	1.1\|360027\|49\|NZ_CP022355\|PILER-CR	360027-360075	49	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	558918-558966	10	0.796
NZ_CP022355_1	1.1\|360027\|49\|NZ_CP022355\|PILER-CR	360027-360075	49	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	594205-594253	10	0.796
NZ_CP022355_1	1.1\|360027\|49\|NZ_CP022355\|PILER-CR	360027-360075	49	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	90452-90500	11	0.776
NZ_CP022355_1	1.1\|360027\|49\|NZ_CP022355\|PILER-CR	360027-360075	49	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	598838-598886	11	0.776

1. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 4, identity: 0.929

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatcaagt	Protospacer
***************************************************. *.

2. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 4, identity: 0.929

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatatgcg	Protospacer
*************************************************** *. .

3. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to LN997803 (Escherichia coli phage phi467) position: , mismatch: 4, identity: 0.929

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatatgcg	Protospacer
*************************************************** *. .

4. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to NZ_CP023526 (Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.929

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa---	CRISPR spacer
actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcacca---gaatgc	Protospacer
**************************************************   .**

5. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 4, identity: 0.929

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actggcttgtaatcagtaggtcaccagttcgattccggtagtcggcaccacttacg	Protospacer
****.*********************************************.*** .

6. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 4, identity: 0.929

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actggcttgtaatcagtaggtcaccagttcgattccggtagtcggcaccacttacg	Protospacer
****.*********************************************.*** .

7. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 4, identity: 0.929

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actggcttgtaatcagtaggtcaccagttcgattccggtagtcggcaccacttacg	Protospacer
****.*********************************************.*** .

8. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 4, identity: 0.929

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actggcttgtaatcagtaggtcaccagttcgattccggtagtcggcaccacttacg	Protospacer
****.*********************************************.*** .

9. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to NZ_CP054057 (Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence) position: , mismatch: 5, identity: 0.911

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccaaatgcg	Protospacer
**************************************************  *. .

10. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 5, identity: 0.911

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
accgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatatgcg	Protospacer
**.************************************************ *. .

11. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 5, identity: 0.911

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcacaaatcagc	Protospacer
************************************************ * *.*.

12. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 5, identity: 0.911

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcacaaatcagc	Protospacer
************************************************ * *.*.

13. spacer 1.2|360120|56|NZ_CP022355|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 6, identity: 0.893

actgacttgtaatcagtaggtcaccagttcgattccggtagtcggcaccatttaaa	CRISPR spacer
actggcttctaatcagtaggtcaccagttcgattccggtagtcggcaccatatgcg	Protospacer
****.*** ****************************************** *. .

14. spacer 1.1|360027|49|NZ_CP022355|PILER-CR matches to NC_020866 (Rhodovulum phage RS1 genomic sequence) position: , mismatch: 10, identity: 0.796

gtgtcggtggttcgattccgcctccgggcaccatttaagtgcgccgact	CRISPR spacer
gtgtcggtggttcgaatccgcctccgggcaccacttaagctcttgaaaa	Protospacer
*************** *****************.*****. * . .*

15. spacer 1.1|360027|49|NZ_CP022355|PILER-CR matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.796

gtgtcggtggttcgattccgcctccgggcaccatttaagtgcgccgact-----	CRISPR spacer
gtgtcggtggttcgattccgcccccgggcaccattt-----taccaaataatat	Protospacer
**********************.*************     ..**.* *

16. spacer 1.1|360027|49|NZ_CP022355|PILER-CR matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 10, identity: 0.796

gtgtcggtggttcgattccgcctccgggcaccatttaagtgcgccgact-----	CRISPR spacer
gtgtcggtggttcaaatccgcctccgggcaccattt-----ctcggacgaattt	Protospacer
*************.* ********************     * * ***

17. spacer 1.1|360027|49|NZ_CP022355|PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 10, identity: 0.796

gtgtcggtggttcgattccgcctccgggcaccatttaagtgc--gccgact	CRISPR spacer
gtgtcggtggttcaaatccgcctccgggcaccatttttttcttgtccga--	Protospacer
*************.* ********************   * .   ****

18. spacer 1.1|360027|49|NZ_CP022355|PILER-CR matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.776

gtgtcggtggttcgattccgcctccgggcaccattta---agtgcgccgact	CRISPR spacer
gtgtcggtggttcgattccgcccccgggcaccattcatccaacatagcg---	Protospacer
**********************.************.*   *..... **

19. spacer 1.1|360027|49|NZ_CP022355|PILER-CR matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.776

gtgtcggtggttcgattccgcctccgggcaccatttaagtgcgccgact-----	CRISPR spacer
gtgtcggtggttcgattccgcccccgggcaccat-----tacttcagctaacac	Protospacer
**********************.***********     *.* .*..**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

516537 : 525237

uncultured_Mediterranean_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089072967.1\|516537_517014_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.7e-30	45.9
WP_089072968.1\|517015_517825_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	2.4e-26	36.1
WP_084884015.1\|517916_518084_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_089072969.1\|518098_518335_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_089072970.1\|518555_519791_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.2e-38	33.0
WP_089072971.1\|519802_520255_+	dUTP diphosphatase	G0YQD9	Erwinia_phage	3.0e-47	64.4
WP_089072972.1\|520337_520985_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_089072973.1\|521112_521976_+	YicC family protein	NA	NA	NA	NA
WP_089072974.1\|522174_522798_+	guanylate kinase	K4JYM5	Abalone_herpesvirus	7.5e-20	37.1
WP_089072975.1\|522818_523100_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_089072976.1\|523122_525237_+	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	6.3e-10	35.1

DBSCAN-SWA_2

983756 : 991997

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089073766.1\|983756_984884_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.4e-93	48.3
WP_089073340.1\|984897_985236_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.7e-06	38.2
WP_089073341.1\|985447_986203_-	inositol monophosphatase	NA	NA	NA	NA
WP_089073342.1\|986339_987059_+	RNA methyltransferase	NA	NA	NA	NA
WP_089073343.1\|987145_987613_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_089073344.1\|987635_988850_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.7e-36	40.7
WP_089073345.1\|988871_989255_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	7.0e-53	77.4
WP_089073346.1\|989271_989595_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.8e-22	48.6
WP_089073347.1\|989613_990126_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_089073348.1\|990140_991997_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.0e-101	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP022356

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022356_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022356_1

504885-505022

Orphan

Consensus_repeat	Method
AAATCCAGACCCAAATCC	CRT

3 spacers

The CRISPR arrays of NZ_CP022356_1

>merge|NZ_CP022356|1|504885-505022|CRT
TAATCCAGATCCAAATCCAGACCCTAACCCAGATCCAAATCCAGACCCTAACCCAGATCCAAATCCAGACCCAAATCCGGATCCAAATCCAGACCCAAATCCGGACCCAAATCCAGACCCAAATCCAGACCCAAATCC

>NZ_CP022356|1|1|504885-505022|CRT
TAATCCAGATCCAAATCC	AGACCCTAACCCAGATCC
AAATCCAGACCCTAACCC	AGATCCAAATCCAGACCCAAATCCGGATCC
AAATCCAGACCCAAATCC	GGACCCAAATCCAGACCC
AAATCCAGACCCAAATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022356.1\|WP_089074191.1\|500384_501344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022356.1\|WP_089074187.1\|494947_496255_+\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NZ_CP022356.1\|WP_089074198.1\|507126_507903_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NZ_CP022356.1\|WP_089074194.1\|502332_502689_-\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NZ_CP022356.1\|WP_089074201.1\|513596_514658_+\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225115
NZ_CP022356.1\|WP_089074202.1\|514632_515325_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP022356.1\|WP_145955046.1\|504428_504572_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|367908
NZ_CP022356.1\|WP_089074189.1\|498509_499268_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP022356.1\|WP_158522373.1\|501424_501796_-\|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|197918
NZ_CP022356.1\|WP_089074203.1\|515399_515957_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211400
NZ_CP022356.1\|WP_089074190.1\|499277_500171_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP022356.1\|WP_089074188.1\|497428_498487_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381387
NZ_CP022356.1\|WP_089074783.1\|508306_510025_+\|potassium-transporting-ATPase-subunit-KdpA	unknown	unknown	gnl\|CDD\|377138
NZ_CP022356.1\|WP_089074205.1\|516426_517062_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP022356.1\|WP_089074195.1\|503339_504356_-\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NZ_CP022356.1\|WP_089074199.1\|512087_512648_+\|potassium-transporting-ATPase-subunit-C	unknown	unknown	gnl\|CDD\|376890
NZ_CP022356.1\|WP_089074197.1\|505611_506757_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238559
NZ_CP022356.1\|WP_158522374.1\|516170_516362_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377048
NZ_CP022356.1\|WP_089074782.1\|496263_497415_+\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP022356.1\|WP_089074200.1\|512733_513528_+\|DUF4118-domain-containing-protein	unknown	unknown	gnl\|CDD\|225115

Protein	Function_ID	Function_description	E-value
NZ_CP022356.1\|WP_089074197.1\|505611_506757_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	1.91839e-87
NZ_CP022356.1\|WP_089074187.1\|494947_496255_+\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NZ_CP022356.1\|WP_089074198.1\|507126_507903_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.7767e-51
NZ_CP022356.1\|WP_089074194.1\|502332_502689_-\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	4.91858e-14
NZ_CP022356.1\|WP_089074201.1\|513596_514658_+\|GHKL-domain-containing-protein	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	1.02355e-48
NZ_CP022356.1\|WP_089074202.1\|514632_515325_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.76559e-71
NZ_CP022356.1\|WP_145955046.1\|504428_504572_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|367908	pfam04355, SmpA_OmlA, SmpA / OmlA family. Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).	0.00366987
NZ_CP022356.1\|WP_089074189.1\|498509_499268_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	7.66155e-71
NZ_CP022356.1\|WP_158522373.1\|501424_501796_-\|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	2.49402e-13
NZ_CP022356.1\|WP_089074203.1\|515399_515957_-\|hypothetical-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	8.12831e-10
NZ_CP022356.1\|WP_089074190.1\|499277_500171_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	2.10515e-106
NZ_CP022356.1\|WP_089074188.1\|497428_498487_+\|aldo/keto-reductase	gnl\|CDD\|381387	cd19161, AKR_AKR15A1, Microbacterium luteolum pyridoxal 4-dehydrogenase (PLD) and similar proteins. Microbacterium luteolum PLD (EC1.1.1.107) is a founding member of aldo-keto reductase family 15 member A1 (AKR15A1). It catalyzes irreversible oxidation of pyridoxal.	4.62591e-140
NZ_CP022356.1\|WP_089074783.1\|508306_510025_+\|potassium-transporting-ATPase-subunit-KdpA	gnl\|CDD\|377138	pfam03814, KdpA, Potassium-transporting ATPase A subunit.	0
NZ_CP022356.1\|WP_089074205.1\|516426_517062_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.48406e-23
NZ_CP022356.1\|WP_089074195.1\|503339_504356_-\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	3.90769e-18
NZ_CP022356.1\|WP_089074199.1\|512087_512648_+\|potassium-transporting-ATPase-subunit-C	gnl\|CDD\|376890	pfam02669, KdpC, K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.	3.04047e-70
NZ_CP022356.1\|WP_158522374.1\|516170_516362_-\|hypothetical-protein	gnl\|CDD\|377048	pfam03466, LysR_substrate, LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.	6.56043e-05
NZ_CP022356.1\|WP_089074782.1\|496263_497415_+\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	6.327e-144
NZ_CP022356.1\|WP_089074200.1\|512733_513528_+\|DUF4118-domain-containing-protein	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	1.90511e-18

>NZ_CP022356.1|WP_145955046.1|504428_504572_-|outer-membrane-protein-assembly-factor-BamE
MKIRRKNILHIRRRRTWYYVSNKKNIQIDDSQQNIKLFLEDDAWIRL
>NZ_CP022356.1|WP_089074195.1|503339_504356_-|LytTR-family-transcriptional-regulator
MNKFKKYYKNNPFYFIFLGIVFFKYFVDTFQNAITRVRTLDSVNVTTSLKYQLFIEVENHLFGFIFIAFSLYWVGRVFSNESCSFLYKARCLITVILLYCCFIYIAVSTTDIVSIYLFHPEIIGKAIIAQHSFFYIWLQGLKIIFNWNGFFYYVFISTSPALHIITYAFFVSFLKKEQLTILTRGFLEKVGRYNAKLQEKQDSTDNNSKKSILPCDALDSNTAKEPVDLIEVFIAKKLNKEFFISVKDIISIHSDGNYVELITYDDSFLIRATLKNILPQLPDFYMKIHRSALININQVNDIKIDNEDRKMYAIMKNNTEISISRSNQKEFKMKWARN
>NZ_CP022356.1|WP_089074194.1|502332_502689_-|LytTR-family-transcriptional-regulator
MEVTGDKSKSNKQNEKYFSVNALNQNIVVKENEIMRVESSGNYVHLHTTEHFFPMRQTLTTLLKELSGNFIQIKRGVVVNLKYVLDLNNNEMVLINEDRYTVSEKYIDELNLAWKNYA
>NZ_CP022356.1|WP_158522373.1|501424_501796_-|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein
MNNISHSYKNDIKFKLKETSEHHENFFIIKGLYKDELVKKEDIIYIKADGNYIDLVSSKKEFPMKTSLKKIQSSLPKSFVRVHRSFIINIDFFDLKNLKDNTIVSLENHVIPTSKQYLSLMTN
>NZ_CP022356.1|WP_089074191.1|500384_501344_+|hypothetical-protein
MSRILNTKIFRKQHEKKLITASFSSLILLTACGGSSSGSDSKPAPKPEKVQFSFPDKTVKNPIYYGDNLPLPFSSDNGLTLTKTHSSIDTDSLKSQFISTIGANKSDVRDFTQKINCIGNDCYVPIDRTITNDPKYNSQVPLHAYWTILNNGTKNDGYHIPKDRTTIAQDQANVTITFSGFASDRVYNEFNKYQPIYFKDYYLIDNGKNFNELGRLNHFLVDNESIQFTNCGDTISNPVVTVTNSSPKHKLDTPSFTKKDNTFTFEDDVQHDDRNPFNRDDQSTIVITFSKITNTDNCKINLIEKSGIKLNLKTGQMDQ
>NZ_CP022356.1|WP_089074190.1|499277_500171_+|fumarylacetoacetate-hydrolase-family-protein
MKLLRFGPKGQEKPGLIDKDGTIRDLSAYITDVNGDALSTEVLNKLQTIDPNTLPEVDENTRIGPCVGNVGKFLCVGLNYSDHAKESGMALPKEPEIFTKATSAISGPNDNIIKPKNSDKLDWEVELAIIIGKEAKYVDEVDAEDHIAGYCVCNDVSERTFQLEKGSQWDKGKGCDTFGPIGPWLVTKDEVKDVLNLKMWLKVNGKTFQNGNSNTMVFKPAYIVSYLSQFMSLQPGDVITTGTPPGVGLGQTPPHYLNSGDKIELGIEGLGTQSQTVCDYKSSTNAITHKELETVTE
>NZ_CP022356.1|WP_089074189.1|498509_499268_+|SDR-family-oxidoreductase
MKSIIVTGGGSGIGRSICEILANNNFTVQVLDMCLDSAYETASLIESKGGKAYPLKVDVTNFDEVNQAIKNIGEAFQLFGLVNNAGIAHIGNIESTTSNDMDKLYQVNIKGAFHCSQAVIPFMKANNEGVIVNLASIAASVGIQDRFAYSMTKGAVLSMTYSIARDYIDFGIRCNSVSPARVHTPFVDNFIKNNYPNNQNEMFEKLSKSQPIKRMGTPKEVASMVNYLFSENAAFMTGTDFPVDGGFIKLNN
>NZ_CP022356.1|WP_089074188.1|497428_498487_+|aldo/keto-reductase
MRNYGLQKNLVGQTSIKISNIGFGGASIGNLFRSISNEQANQAVQKSVELGINYFDTAPRYGHGLSERRLGDSLRIHDREKLIISSKVGRILKPIRNIEPNTLRHGFQSPMPFDEIFDYSYHGIMRSFEDSLQRLGTSHIDIMYIHDIGEFTHQDMNNHYYAQLKNGGFRALEELKKDGSIKAIGIGVNETEICNKMLDDFQLDVILLASRYTLLEQESLNHFFPKCKELKTSVVIGGAYNTGILATGVNNYKCPIYNYEKAPQSIIEKVRVIENICLEYSVSLPAVALQFVLANENVASVIPGLAKSSRVEDTLALLNQDIPSELWSKLVTKGIISETAPLPRKQVELDYQ
>NZ_CP022356.1|WP_089074782.1|496263_497415_+|alpha-hydroxy-acid-oxidizing-protein
MIDYYNNKFPNISDLQTKARKKIPKFAYDYLVGGCIDEISVKKNIRDIENVELRSEFLKPTKSSSIEVDLFGKKYSAPFGVAPIGLQGLMWPKAPEILAKAAKEKNIPYILSTVSSASLEKIAEISEGNAWFQLYNPSKEDIRIDLLRRIKEAEYPVLVVTVDVPTFGYRPRDIKNGLSMPPKMSPTNIFQMIKSPNWLYNMSKSGKPELKTLLPYMPEGMSSNELADFMNKTVMGSVDLDGLKPIRDMWQGPLVIKGLINQRDVQKAIELGADGVIISNHGGRQLDVGESPIKPLKNISEKYGNQIKIMMDSGLRSGSNIASALALGAEFTFLGRSFVYGVSALGEKGAYHTINLLKTQLEQVMAQLGCENIHNLRQHLVEI
>NZ_CP022356.1|WP_089074187.1|494947_496255_+|L-fuconate-dehydratase
MNSNKITDLKTYDVRFPTSENLDGSDAINKDPDYSAAYIELKTEQNNQGYGLIFTIGRGNDVCCQAIESMKHLVIGEDFNDIKENINSFYDKLRSDSQLRWLGPEKGVIHMAMGAIMNAVWDMWARTENKPIWLLLSEMEPEQFINCIDFRYLSDVLSKEEALQMVKANQKDKQQRINFLKNKGYPSYTTSAGWLGYSDDKLRRLAKHAVDEGFQHIKLKVGQDIADDIRRCKIAREVIGDDVKLMIDANQIWEVQEAIDWVNELAPSKPWFIEEPTSPDDILGHRKIKEKIGTVKVATGEHCQNRIIFKQFIENDSLDIVQIDSCRLASINEILAVYLMAAKFNKPVCPHAGGVGLCEYVQHLSMIDYVQISASLEDRVIEFVDHLHEHFEDPCQIENGSYVAPSKPGYSIKMFDQSIEQYSYPNGSEWQKRLK
>NZ_CP022356.1|WP_089074197.1|505611_506757_-|ABC-transporter-substrate-binding-protein
MKNTFIKFFITGILFFFSISVFATNYPVTLKDVSGRTVTIDHKPKNIALAYSRGFPILEILYGNEAGKHVVAWGGDMKAGTPGQYDYFIKKYPNLKNIPELGYINSGGFNTEKFIEMKNKPDILIVDQTLVKTGEETGIFDVLQKAGIPVISYDFYSNPVKNTVKSIETIGIALDREKEAEAFKKIYDTHLKNILTKIKKHGKESNKKTVFIERAAGIGNSSLRTYGDADMGTFIPLLSAQNVMTNSHVGNNFITTLPETVISLQPDIYIMQTSSWKDEKGHSRGQGVPLGYPPVNMKDVKKEQATLLNRTWFNAINAKNTNNVHSIWMNLHNSPYNIIAIEYFAKWIYPNLFKSLDPNKTFQDINSISHNTMIGNPLFVV
>NZ_CP022356.1|WP_089074198.1|507126_507903_+|glycosyltransferase-family-2-protein
MNEISLYILTYNSEQYLSKILDKLKNVVDEILIVDSGSSDSTQQIVERYKNTRFIFNKFENFKQQRMFAEKNCKFDMILFLDSDELPCDQLVESIRNIKKSGFEHHAYRIARYWNVLQKDVRAIYPICSPDHPIKLYNRKFCSFKNSALNHASPSGYLSQSIVKGKLSHFTFETKKILKNKVEHYSDMDAKELIRKGKKSNNLKIIFNPVGAFVKWYLIKGGYKDGITGIHLGKYAYDYTKKKYLKAKNYRKNFHTHK
>NZ_CP022356.1|WP_089074783.1|508306_510025_+|potassium-transporting-ATPase-subunit-KdpA
MNIIFLESILMLVVVISTLALLMKPLGLHMFNAFEGNKTYLDFFGKPMMRIYSLMIGKNINENQTAKSYFISLMMFSLISIFVLFLVLKFQSYLPLNPNHIVNMSWDQALNTAVSFVTNTNWQSYSGETGVSYFSQMAGLAVQNFLSAAVGISVAIVLLRSLKKDRNDIGNFWYDLGISVFYILLPLSIIVSLIFVCLGIPQNIDPNTLAHTISQGEQVITQGPIASQESIKSIGTNGGGFFNANSAHPFENPNAITNFIQVISILLIPCAFTYLLGKYTNKLKLGWLIFGIMSFLFIISYSVMSMSELHLLKDSTTHFLSNFYESNSTISNMEGKDVRFGIIHSTIYNTASTAASDGGVNSFMDSYTPIGGMMALINMATGEIIYGGVGAGLYGMLMYVILAVFIGSLMIGRIPSFLGKRIDGKDMKLAMLSIIVPPCLVLIFTALTMVLPEYKNALTNEGAHGFTEILYAFTSASNNNGSAFAGLSSNTIYFNTTLALCMFLGRFVSIFAVIFIAHNFINRKNVRINTTNDIQVTSFVFSILLLFTIVVIGALTFFPALSIGPLLDNFSY
>NZ_CP022356.1|WP_089074199.1|512087_512648_+|potassium-transporting-ATPase-subunit-C
MFNYIKFSILSLIFFTFLLGIIYPGLIMLGGNLLAYKETHGSLLYKNQKVIGSSLIGQNFSSNQSLFQSRPSGSDYNTLATGGSNLAPNSNKLVKELKQRIADLHKLNGNNKKIPEELVFASGSGLDPNISVKAALYQAPRISKENNIPIDSIIELIHTHEIQGFLNPNYVNVLKLNIALLKLNEK
>NZ_CP022356.1|WP_089074200.1|512733_513528_+|DUF4118-domain-containing-protein
MSEKDYQNNILICFSYEDFNEELLLSYANLFNTKNSKIQILFIEKIVKNHKNNIQLELNIQKKANDLGFEVHHISSSNYYLDLLNYAKLKNITDIVLNYPKYVFWNKWFVITKLNRFLKNAGEIQIHLKNMKSNSVSLLSQYLSLIDLSDIQKRSMKSFLIIFLFCFLISPFLEIIRITDASMILILLLMLCSYLYGFLPSLVATLIALGSYYYMFLSPKLSFSLASIEQVISFFVFMAVSFIIIRLTSFTKFAIQILQKKKVH
>NZ_CP022356.1|WP_089074201.1|513596_514658_+|GHKL-domain-containing-protein
MPLDLYFDYETFFIESSDHIHLKEESLKKISSQLITPIRYAFSNQVDCGFSTQNNIFSINYFLMPISIENRKIGIIGVKLNSLLEKNNFMKYDKKLFLNMCSQISIVLRKKIADEDTLILKQKSMQNLILSSLSHDLKTPLSSIIGSLSSLETLYDSLDKNDRLEFVQIAQEEAKRLEFQTSNMLNMLKLENKTSSLKLEKVNTQSYLKKICTIFKKRYPEFQLEITVKNIFKIKIDTSFFEQALFNLLDNAVKYSLNCKKIKIKIWSNNYDAFISISNQGNPIEKHELTKIFDYFYQVRKSDLQRAGSGLGLAIVKEIISAHDGKVSANSMSGMNTFTIQLRAENNEKNTVD
>NZ_CP022356.1|WP_089074202.1|514632_515325_+|response-regulator-transcription-factor
MMKKILLIDDEPQIRRYINKTLLVVGFDVYLAPNGKEGLRLCNEDHPDLILLDLGLPDIDGQDLLVMFKKNYPELPIIVLSARDQTDEIVQAINSGANDYIKKPFDTPELIARINRHISLSKSTESIQNDSKFSIANLSMSIEKHEVKIDDEVIHLSKKEFQILHYMFQQKGKIITQNQLLKEVWGNTFSDEVQYLRVYIGQLRKKLKNCSIQPLITTESGVGYYFGKVS
>NZ_CP022356.1|WP_089074203.1|515399_515957_-|hypothetical-protein
MRYINLSIPSLLILLFSFEILAKSYIEKRKELDDMSTQTIELLSKNNATAERELKTAFGYAVFDNSNVTVLFFGGSSGKGVLYNNKTNQRTYMKMAGANLGVGLGVKNIRIVFIFLSKEDFIKFKDNGWVGGLQADATAKSKNKGGANDVQTDMSGVQTYVITKKGVALQVSLEGAKYWKDDALN
>NZ_CP022356.1|WP_158522374.1|516170_516362_-|hypothetical-protein
MLANMGIGLITTFMAEEDVIAKKLYEIPLDLGDLKSEIFLIYTSLEFQKNSHEIFYNYFNLNN
>NZ_CP022356.1|WP_089074205.1|516426_517062_-|LysR-family-transcriptional-regulator
MQKINFSIKQIECFYKVAMTKSLKMASNQLFISPPAVWKHIKNLELQCGEDLFIKTGIKLELSDFGRLLLLEAKKFLTETHSLNNCISSLSKKSFEPIRIAFLNSFQNIIFNLIQPFIENNPSIPFELSNERWADCNNILEEKNFDFVITADPPSIKSEYKYKYLGTVDYGLFCSSKHILKDELINNIANLENETFVTTRSTSLPQKNKIS

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Crispr_ID: NZ_CP022356_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022356_2

983632-984243

Orphan

Consensus_repeat	Method
ATCTATTNNATNCTTGATCATGTTTCT	CRT

13 spacers

The CRISPR arrays of NZ_CP022356_2

>merge|NZ_CP022356|2|983632-984243|CRT
ATGTATTTATTTCTTGATCATACTTCTAACATTATGCTGGATTAGATCTATTATATCCATGATCATCTTTCTAACATTTTACAGGATTACATCTATTTGATGGTTGATCATGTTTCTGAGATTTTACAGGATTACATCTATTCGATACTTGATCATGTTTCAGAAATTTTACAAGATTACATCCTTTCAATACTTGATCATGTTTCTAAGATTTTACAGGATTACATCTATTTGATACTTGATCATGTTTCTGACATTTTACAGGATTACATCTATTCGATACTTGATCATGTTTCTATGATTTTACAGGATTACATCTATTCGATACTTGATCATGTTTCTAAGGTTTTATAGGATTGTATCTATTCGGTACTTGATCATGTTTCTATAATTTTACAGGATTACATCTATTCGATACTTGATCATGTTTCTAAGGTTTTATAGGATTGTATCTATTCGGTACTTGATCATGTTTCTTGTAATTTACAAGATGACATCTATTATAATCTTGATCATGTTTCTGATATTTTATAGAATTACATCTATTCGATACTTGATCATGTTTCTGATATTTTACAGAATTACATCTATTATATTCTTGATCATGCTTTG

>NZ_CP022356|2|2|983632-984243|CRT
ATGTATTTATTTCTTGATCATACTTCT	AACATTATGCTGGATTAG
ATCTATTATATCCATGATCATCTTTCT	AACATTTTACAGGATTAC
ATCTATTTGATGGTTGATCATGTTTCT	GAGATTTTACAGGATTAC
ATCTATTCGATACTTGATCATGTTTCA	GAAATTTTACAAGATTAC
ATCCTTTCAATACTTGATCATGTTTCT	AAGATTTTACAGGATTAC
ATCTATTTGATACTTGATCATGTTTCT	GACATTTTACAGGATTAC
ATCTATTCGATACTTGATCATGTTTCT	ATGATTTTACAGGATTAC
ATCTATTCGATACTTGATCATGTTTCT	AAGGTTTTATAGGATTGT
ATCTATTCGGTACTTGATCATGTTTCT	ATAATTTTACAGGATTAC
ATCTATTCGATACTTGATCATGTTTCT	AAGGTTTTATAGGATTGT
ATCTATTCGGTACTTGATCATGTTTCT	TGTAATTTACAAGATGAC
ATCTATTATAATCTTGATCATGTTTCT	GATATTTTATAGAATTAC
ATCTATTCGATACTTGATCATGTTTCT	GATATTTTACAGAATTAC
ATCTATTATATTCTTGATCATGCTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022356.1\|WP_089074626.1\|990680_990809_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|365891
NZ_CP022356.1\|WP_089074629.1\|992479_992689_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP022356.1\|WP_089074625.1\|989682_990069_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP022356.1\|WP_089074617.1\|977456_978098_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NZ_CP022356.1\|WP_089074618.1\|978515_980063_-\|tRNA(Met)-cytidine-acetyltransferase	unknown	unknown	gnl\|CDD\|224361
NZ_CP022356.1\|WP_089074632.1\|996792_997482_+\|DUF899-family-protein	unknown	unknown	gnl\|CDD\|377584
NZ_CP022356.1\|WP_089074616.1\|976317_977334_-\|proline-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|237017
NZ_CP022356.1\|WP_089074623.1\|987513_989064_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP022356.1\|WP_158522408.1\|975994_976312_-\|proline-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|237017
NZ_CP022356.1\|WP_089074631.1\|996397_996634_-\|DUF1496-domain-containing-protein	unknown	unknown	gnl\|CDD\|369340
NZ_CP022356.1\|WP_089074630.1\|992737_993763_-\|DUF2860-family-protein	unknown	unknown	gnl\|CDD\|371359
NZ_CP022356.1\|WP_089074621.1\|981588_982809_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP022356.1\|WP_089074620.1\|980619_981588_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|184254
NZ_CP022356.1\|WP_145955063.1\|990906_991125_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022356.1\|WP_158522407.1\|972090_972582_-\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|224442
NZ_CP022356.1\|WP_089074628.1\|991253_992207_-\|transaldolase	unknown	unknown	gnl\|CDD\|235381
NZ_CP022356.1\|WP_089074619.1\|980188_980554_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224361
NZ_CP022356.1\|WP_089074624.1\|989068_989686_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP022356.1\|WP_089074613.1\|973558_974236_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022356.1\|WP_089074614.1\|974246_976022_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237017

Protein	Function_ID	Function_description	E-value
NZ_CP022356.1\|WP_089074626.1\|990680_990809_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|365891	pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.	3.4326e-06
NZ_CP022356.1\|WP_089074629.1\|992479_992689_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.59271e-28
NZ_CP022356.1\|WP_089074625.1\|989682_990069_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.1464e-29
NZ_CP022356.1\|WP_089074617.1\|977456_978098_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	4.3116e-89
NZ_CP022356.1\|WP_089074618.1\|978515_980063_-\|tRNA(Met)-cytidine-acetyltransferase	gnl\|CDD\|224361	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only].	2.03063e-94
NZ_CP022356.1\|WP_089074632.1\|996792_997482_+\|DUF899-family-protein	gnl\|CDD\|377584	pfam05988, DUF899, Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.	1.23558e-69
NZ_CP022356.1\|WP_089074616.1\|976317_977334_-\|proline-dehydrogenase-family-protein	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	1.54112e-133
NZ_CP022356.1\|WP_089074623.1\|987513_989064_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.65173e-90
NZ_CP022356.1\|WP_158522408.1\|975994_976312_-\|proline-dehydrogenase-family-protein	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	2.12402e-43
NZ_CP022356.1\|WP_089074631.1\|996397_996634_-\|DUF1496-domain-containing-protein	gnl\|CDD\|369340	pfam07383, DUF1496, Protein of unknown function (DUF1496). This family consists of several bacterial proteins of around 90 residues in length. Members of this family seem to be found exclusively in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.	3.36266e-10
NZ_CP022356.1\|WP_089074630.1\|992737_993763_-\|DUF2860-family-protein	gnl\|CDD\|371359	pfam11059, DUF2860, Protein of unknown function (DUF2860). This bacterial family of proteins has no known function.	1.38965e-50
NZ_CP022356.1\|WP_089074621.1\|981588_982809_-\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	7.35048e-41
NZ_CP022356.1\|WP_089074620.1\|980619_981588_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|184254	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein.	3.2916e-27
NZ_CP022356.1\|WP_158522407.1\|972090_972582_-\|thermonuclease-family-protein	gnl\|CDD\|224442	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair].	3.26998e-26
NZ_CP022356.1\|WP_089074628.1\|991253_992207_-\|transaldolase	gnl\|CDD\|235381	PRK05269, PRK05269, transaldolase B; Provisional.	0
NZ_CP022356.1\|WP_089074619.1\|980188_980554_-\|hypothetical-protein	gnl\|CDD\|224361	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only].	1.13403e-05
NZ_CP022356.1\|WP_089074624.1\|989068_989686_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.38448e-58
NZ_CP022356.1\|WP_089074614.1\|974246_976022_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0

>NZ_CP022356.1|WP_089074621.1|981588_982809_-|AAA-family-ATPase
MNRESTIDHLLTIAEQTQQVQSDRIQIVLDERKKDPFPPMSKALMETRSGLTRRRLDDAIAKMESDGHQFTKNNANHYSLTLPEAHQIMDYANIPAFHQKKNHEHKPWIINIQNQKGGTGKSMSAVHMAASLALNIEKRYRICLIDLDPQGSLRLFLNPQISSSSQDNIYSAVDVMLDNIPDDETIDREFLLEKVCLPTQYPNLKTIAAFPEDSMFNAEAWQDLAENQSLDGVVKLLKEKVIDRISDDFDIIMIDTGPHVDPLVWNAMYASNALLIPCAAKRLDWSATVNFFQHLPTVYQMFPKDWDGLKFIRLMPTMFEDDNKKQMSVLTEMNYLLREIVMMATIPRSRAFETCADTYSTVYDLTIHDFEGGKRTLQSAQEAIQKVGLEFERVLHSYWSTLKKDI
>NZ_CP022356.1|WP_089074620.1|980619_981588_-|ParB/RepB/Spo0J-family-partition-protein
MVIKTQDLNAKLFGRVDKRKTSNKEETKLAMQEKAPFIELNVAGEEAITFRLVKIPANQIEIKTNVFEENAREQEFLTKSALSDILYTLETKGQQYPAIGRQNGNKIEVLDGSRRRQACIYAQKEFLIYVAQNVNSNHAKFLSDVANAHKSLSLYEKGKEMKNALKTGKARDQKELSNLFQCSEALVSGALKAADLPLDLLRVYPNVSEVGRPTIVKIHKIFNQLTQKEKDSVIQKIQKTEFYKLSDIGTIGTTRLIKEVSIKLENIINSIRPENKKSENIGNLLSGKINYKLSNNNLALKISDINEEKAKKILMILEEHLT
>NZ_CP022356.1|WP_089074619.1|980188_980554_-|hypothetical-protein
MKKILETLEQTQKANIRNVIFVRSKDTFWVSFIETLKKQFSKSFVQQEYYQKNQLNKLLGDEVDLVILDFRLDIDINLLSICSGSIPGNGCIVIRINHPCEYSDNFSKRFFLTLKNSNLIF
>NZ_CP022356.1|WP_089074618.1|978515_980063_-|tRNA(Met)-cytidine-acetyltransferase
MVKQVIKVYEGRSKRPLIVTASRGRGKSTGLALAAFYLMSNHKVNIIVTSPHKNNVVAVFNKLAELFRECFNWKFEFQNSSIQYMSPEDAVKYNIRPCLLFVDEAASIPIEILKELALSFNRVVFSSTVHGYEGTGRGFEIKFKKFMKIKFPNCNFFELHEPIRWSTDDPLESWLDELLLVNDISPSNMIGTFNKKFLKVDNNYLSNNENILKQVFTLLVDSHYQTQPSDLKQLLNKGNLVVFLVMEGDTLLGCALVEKEYNFSKEDSLNIFRGRKRTKGNLLQQSLSVYCNQFDLLLNNFGRIMRIAVLNNRRQEKIGSGLINQIRKWATINAIDIVGTSFGIDSELLNFWFSNNYKPVKLGIHKDASSGLYSIVMLDSKIKRYDEFERLFDLFNYSFVNSLSSTYKNEPIDYLYTILLNIKLPFESFPDENTYIKKYLNGQMHYEFVEFILKQWLIKVIYQKKASLENCSILILKIIQSKDWTICAKKNNLNGRRETEKFLKQKISILLNQKN
>NZ_CP022356.1|WP_089074617.1|977456_978098_-|pyridoxamine-5'-phosphate-oxidase
MSADYESSRREYLQDRLNDGEMPPNPFSLFEVWLKEYVESKAKDPTAMVLATVNKEGQSFQRIVLMKELTNDSIIFYTNLKSNKANQIKECNKVSINFPWQSMDRQVNMQGEATFLDAEKSEKYFLSRPFESQIAAWSSPQSQVIESRGFLDKAFEENFKKFSKENIKKPEFWGGVVVKINYIEFWQGGGKRLHDRFLYQKEGQNWNLNRLAP
>NZ_CP022356.1|WP_089074616.1|976317_977334_-|proline-dehydrogenase-family-protein
MVIKNPKTSIQHDLRELWTEVENHYLEKESTVLNALINSISVTDEKRSEIQKKAKELVTEIRGDKTSVQFFDAIMLEYGLDNNEGILLMCLSESLLRIPDTETIDLFIKDKFSSANWKKHLKQSKSIFVNASTRGLNLSGKLVFLDASLTENPYLKVNKLVEKLSEPILRKILFQVIKFMGKQFVLSENIDDILNDKVKIDKDNHTYSFDMLGEAAVTADDSESFFDSYLHGIKTTSLISKKLKKENLANISIKLSALYPRYEGVKKEEVLEYLYQKVVLLVKEAKQHDIGITIDAEEASRLELSLLLFEQIYTSNLCKNWGKFGLVVQAYSKELYQF
>NZ_CP022356.1|WP_158522408.1|975994_976312_-|proline-dehydrogenase-family-protein
MNKLSHEQETIIPVRLVKGAYWDYEIKNAQQLGLNEYPVFTLKESTDLSYMACSSFLLSDECQKFMYPQFATHNAYTLCMIESIGYKKITSYKNYLEWVMFYIIM
>NZ_CP022356.1|WP_089074614.1|974246_976022_-|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MGDVLYNHVRMINKKPVRIYAPIGSYENLLPYLVRRLLENGANSSFIHQLLDDSYAINEVVKDPLKYLIDSGLKSNPKIDLPQNIFRPYRDNSSGVDINNLSSQMKLQQNVIPYLSCYFNASSIVAGKCLDSNNRIEIRSPYDPEKIIGKVAWSNEDDVKMAFKSAVNFKESWIQTPIKTKSKMASDLANLIEENKHELIALNIMEAGKTFSDSIDEIREAIDFCRFYASEVMQMEQDFPTLFNDKITYKYQGKGICVCISPWNFPIAIFIGQIVAALVTGNCVIAKPAPQTSVIAFKLGKLILEAGFPEHAFHLLLGDGVSLGNKIIEQNNIDQIVFTGSTQTALHIRDKIAQVETNMIDIIAETGGLNVMVVDSTALLEQAAIDIIHSAFYSAGQRCSALRVLYIQEDIYQKLIDLIIGATMLLKVGSPEQMNTDIGPVIDKQAQNMLLTHIERMKKLGKIIYEQEQFNNEGQFVYPTIVKLDSINELTHEIFGPVLHVISYKPNSLGHIIEDINNQGYGLTLGIQTRNHILANYLEKNIKVGNTYINRNQVGAVVESQPFGGMGKSGTGPKAGGPLYLKELSKKNINL
>NZ_CP022356.1|WP_089074613.1|973558_974236_-|hypothetical-protein
MRNHFKNIEKEQEVHMNWENLSLQKRYDVLLSMINGVKNIKLKNMISNSLTNDYDKLKEHSKQSSITGELNEYYYERKGTIILYFSEEIEFGFFLSFIFCQLLISNKIIMNNILEEYYLLYEKDLDLFRNLFEQQIKIESLTQIQEKLEKDKVNLLVLFGNKINGSQFSKIVSRRNDYIIKIIHESNLQTPLCIIDQDRAFSYCNERVKTTNLTAIGGNTDLLEI
>NZ_CP022356.1|WP_158522407.1|972090_972582_-|thermonuclease-family-protein
MLKKIIIFLLLTLISMNVVSKTIYIQSTKIHVHDGDTLNFYYQSRKYKIRSSCIDTPELYGPSKSIGLQSKKKFIQLIKNHKVIKFILKGKDRYGRYIGTLYGNDSDINLQMVRQGYAFVYKKYCQNPEYYFAFKQAKLEKKGLFREGKHITEPWKYRRKYRP
>NZ_CP022356.1|WP_089074623.1|987513_989064_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MQEQELPKIETVTPRQWVGVIAGLLGAFLAIIDITITNTSIKELTGAFSLSEDEASWISTSYLVAEIIAIAVTAWLIEVLGIRRYLLWSVILFLISSVGCTLANSLNTIVIARVCQGLSGGALIPIALSLMSFLLPKSKQPIGMSLFGLIAALAPTLGGTLGGWLTQNFSWEYIFYINLIPGLILIPMIFYSLDTDELNKKAFLEGDWLGILLISIGLASLLIVLEQGNQNNWFQSSLITLLLVISIVSLTYFTLVERKAKKPLIDLNLFKDWHFLVSLLIFFVFGFYLLGVMFVIPLYLEQVHDYNPLQVGEVIMWMVIPQIICAPLIPKLIKYIPAQYIVFSGFLILSMSSYANIHMSPNFAGDQMIPSIILRGMGIPFIIIPIQIIAFNTISKDKIDQASVLVNMSRNLGSSFGIAIIQTMVTNLSRANSNSIKSTVSSLDQNALDYVQNLQNKFIMNGFDSNQSHLMALNQLNQKIQLNASIIAYNDIYFTLMVLTTIAGFLVFIICSKYKK
>NZ_CP022356.1|WP_089074624.1|989068_989686_-|HlyD-family-secretion-protein
MKVLVSKNFQSKNDLDSALSKLKTSQAKVNSGQATLSAAQKKLAVLDSSIKEQKAVLKAHESDLLKAKINYQRTKIFAPVDGFVAQRSIQKGTYVQNGSKLLTLVPSSDIWIEANFKETQIQNMKKGQKVEITFDAYPNLNFSGEVNSISPASGSEVALLPADNATGNFTKIVQRIPVKITLTNIQKNKARLIPGLSAYVTVDLR
>NZ_CP022356.1|WP_089074625.1|989682_990069_-|HlyD-family-secretion-protein
MIVTIIFVSVGIIALLYWELWAKYYESTDDAYLKGNLTNISAQVSGVITNNYIIDNSFVKKGTLLATIDDQDYVANLKQAEANIAVSKATIKNYEAQFQMQNSEIEKSNSELDSAKAQEVYDQKITTE
>NZ_CP022356.1|WP_089074626.1|990680_990809_+|LysR-family-transcriptional-regulator
MEISTSQESKRLAKLEKELGVVLIQRTTRNSELTALDINKGI
>NZ_CP022356.1|WP_145955063.1|990906_991125_-|hypothetical-protein
MKNMFISLIACLGFSFSVIASDFTLQQDSFNSKDFSNIQNSMDEQNPNNISNFLVHNKRGGDLFQGRYGNRR
>NZ_CP022356.1|WP_089074628.1|991253_992207_-|transaldolase
METQLSQLKKITDVVADTGDIQSIIKYKPSDATTNPSLILKSTQLDEYKPFINEAVQYASAVTNTIEQKVELACDYLAVKIGKEILNHIPGLISTEVDARLSYNTDETIRKAETLISLYEQLGVNKSRVLIKIASTWEGIQAAKILEQKGIHCNLTLLFSMAQAKAAADAGVYLISPFVGRIYDWYVNRNKTEYVGSDDPGVKSVKEIFSYYKKYNFKTIVMGASFRNTSQILELAGCDKLTISPQLLEQLSESRNVVSQKLNNAIETNEKIPNITHQQFLWEHNSDLMAVEKLAEGILLFARDQEKLEEMIKQFYL
>NZ_CP022356.1|WP_089074629.1|992479_992689_+|cold-shock-protein
MSKEIGTVKWFNASKGFGFITQNENQPDIFVHFRAIQKEGFKSLNEGDKVSFKIENGEKGLQATEVECV
>NZ_CP022356.1|WP_089074630.1|992737_993763_-|DUF2860-family-protein
MKNIKMESNLNKLSKLASALLIFSVSGNVLAQQASTGKLAAEPGFAGAAIAAIGFNHTDDQFSTDDDNKMWDGQNNKGNSHTEFNLLPLVNLTYTFNSLQDQIFFGVTRENYYLGRIAAPELGYRHIFDNKTVAQISVFDSFSIYKTWKNPFLTGQDRSKTDDTYKGITGKLDNIYNSGIGITFIAGKRDVDKEQSPNPSIMSRDSNFYYTELSYLTKLNEDLTFRVGGNYTKNNADGSARSFNRYALNATLGTNFASGTIASTIMYASTNYDDKIDVVNLPNKKEKDNTYGINLNYTYPNLFGVKKLFGSVNLDYKYNSSNIDFYEYSSLGGFFGIGYSF
>NZ_CP022356.1|WP_089074631.1|996397_996634_-|DUF1496-domain-containing-protein
MTKYYVIVILFLSTFSYGNLRDRVDIDAGDVISSSKLCYFENKKYSFGSIIEINNIKFQCDKRNSFETNGELSWIKLN
>NZ_CP022356.1|WP_089074632.1|996792_997482_+|DUF899-family-protein
MDKKRKELLGKEKQLTKLKDELTLERKNLPWYQMKEDYLFEDEHGKVKFRDLFNNCRQLIMYHLRYHFSWKYPSKECAFFAEHFNGVSNHLRSRDTSFVAVSNVDINKITAFSRRMSWNFKWVSSLGSDFNYDLNLSRSEKMGFDPISYNFDNNLCYGDEVFGISIYFMDEKSNIFCTYATFARGVEVVNTTYNLLDLTPLGRDEEQLAYPLAWLNFKDLYSFCKKNVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP022356_1	1.3\|504987\|18\|NZ_CP022356\|CRT	504987-505004	18	NZ_CP022356.1	505023-505040	0	1.0
NZ_CP022356_1	1.1\|504903\|18\|NZ_CP022356\|CRT	504903-504920	18	NZ_CP022356.1	504879-504896	1	0.944
NZ_CP022356_1	1.2\|504939\|30\|NZ_CP022356\|CRT	504939-504968	30	NZ_CP022356.1	504999-505028	2	0.933
NZ_CP022356_2	2.3\|983749\|18\|NZ_CP022356\|CRT	983749-983766	18	NZ_CP022355.1	930689-930706	2	0.889
NZ_CP022356_2	2.7\|983929\|18\|NZ_CP022356\|CRT	983929-983946	18	NZ_CP022355.1	505428-505445	2	0.889
NZ_CP022356_2	2.7\|983929\|18\|NZ_CP022356\|CRT	983929-983946	18	NZ_CP022355.1	538895-538912	2	0.889
NZ_CP022356_2	2.11\|984109\|18\|NZ_CP022356\|CRT	984109-984126	18	NZ_CP022355.1	386794-386811	2	0.889
NZ_CP022356_2	2.13\|984199\|18\|NZ_CP022356\|CRT	984199-984216	18	NZ_CP022356.1	188812-188829	2	0.889

1. spacer 1.3|504987|18|NZ_CP022356|CRT matches to position: 505023-505040, mismatch: 0, identity: 1.0

ggacccaaatccagaccc	CRISPR spacer
ggacccaaatccagaccc	Protospacer
******************

2. spacer 1.1|504903|18|NZ_CP022356|CRT matches to position: 504879-504896, mismatch: 1, identity: 0.944

agaccctaacccagatcc	CRISPR spacer
agaccctaatccagatcc	Protospacer
*********.********

3. spacer 1.2|504939|30|NZ_CP022356|CRT matches to position: 504999-505028, mismatch: 2, identity: 0.933

agatccaaatccagacccaaatccggatcc	CRISPR spacer
agacccaaatccagacccaaatccggaccc	Protospacer
***.***********************.**

4. spacer 2.3|983749|18|NZ_CP022356|CRT matches to position: 930689-930706, mismatch: 2, identity: 0.889

gagattttacaggattac	CRISPR spacer
gagatattataggattac	Protospacer
***** ***.********

5. spacer 2.7|983929|18|NZ_CP022356|CRT matches to position: 505428-505445, mismatch: 2, identity: 0.889

atgattttacaggattac	CRISPR spacer
atgattttacaggcgtac	Protospacer
*************  ***

6. spacer 2.7|983929|18|NZ_CP022356|CRT matches to position: 538895-538912, mismatch: 2, identity: 0.889

atgattttacaggattac	CRISPR spacer
atgcttttgcaggattac	Protospacer
*** ****.*********

7. spacer 2.11|984109|18|NZ_CP022356|CRT matches to position: 386794-386811, mismatch: 2, identity: 0.889

tgtaatttacaagatgac	CRISPR spacer
tgtaatttaaaagttgac	Protospacer
********* *** ****

8. spacer 2.13|984199|18|NZ_CP022356|CRT matches to position: 188812-188829, mismatch: 2, identity: 0.889

gatattttacagaattac	CRISPR spacer
gataatttgcagaattac	Protospacer
**** ***.*********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022356_1	1.2\|504939\|30\|NZ_CP022356\|CRT	504939-504968	30	NZ_CP010614	Phaeobacter inhibens strain P92 plasmid pP92_d, complete sequence	21194-21223	6	0.8
NZ_CP022356_1	1.2\|504939\|30\|NZ_CP022356\|CRT	504939-504968	30	MT330372	Cronobacter phage JC01, complete genome	32511-32540	7	0.767
NZ_CP022356_1	1.2\|504939\|30\|NZ_CP022356\|CRT	504939-504968	30	MH059634	Dickeya phage Sucellus, complete genome	22609-22638	7	0.767
NZ_CP022356_1	1.2\|504939\|30\|NZ_CP022356\|CRT	504939-504968	30	NZ_KX364409	Aeromonas salmonicida subsp. salmonicida strain M16474-11 plasmid pAsa8, complete sequence	36803-36832	8	0.733

1. spacer 1.2|504939|30|NZ_CP022356|CRT matches to NZ_CP010614 (Phaeobacter inhibens strain P92 plasmid pP92_d, complete sequence) position: , mismatch: 6, identity: 0.8

agatccaaatccagacccaaatccggatcc	CRISPR spacer
agacccaaatccagccccaaatccaggctc	Protospacer
***.********** *********.*...*

2. spacer 1.2|504939|30|NZ_CP022356|CRT matches to MT330372 (Cronobacter phage JC01, complete genome) position: , mismatch: 7, identity: 0.767

agatcca---aatccagacccaaatccggatcc	CRISPR spacer
---cccgggcaacccagacccgaatccggatcc	Protospacer
   .**.   **.********.***********

3. spacer 1.2|504939|30|NZ_CP022356|CRT matches to MH059634 (Dickeya phage Sucellus, complete genome) position: , mismatch: 7, identity: 0.767

agatccaaatccagacccaaatccggatcc	CRISPR spacer
aaatccaaatgcagacccaaatcaagaaat	Protospacer
*.******** ************ .**  .

4. spacer 1.2|504939|30|NZ_CP022356|CRT matches to NZ_KX364409 (Aeromonas salmonicida subsp. salmonicida strain M16474-11 plasmid pAsa8, complete sequence) position: , mismatch: 8, identity: 0.733

agatccaaatccagacccaaatccggatcc	CRISPR spacer
gcggccaaagccagacccaaatccggtcca	Protospacer
. . ***** **************** .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

904207 : 912382

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089074545.1\|904207_905380_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A0F7LAY0	uncultured_marine_virus	1.1e-29	25.7
WP_089074546.1\|905382_906333_+	glycosyltransferase	A8CG95	Salmonella_phage	5.6e-35	30.7
WP_089074547.1\|906412_907432_+	bifunctional UDP-4-keto-pentose/UDP-xylose synthase	A0A2K9KZK0	Tupanvirus	2.7e-27	28.1
WP_089074548.1\|907471_907822_-	DUF3147 family protein	NA	NA	NA	NA
WP_089074549.1\|907936_909196_+	sodium:proton antiporter	A0A2H4J428	uncultured_Caudovirales_phage	2.1e-21	40.6
WP_089074550.1\|909207_910473_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	6.1e-29	34.9
WP_158522401.1\|910675_912382_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.6e-72	32.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022355

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP022356

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection