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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015268 Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 1, complete sequence 0 crisprs c2c4_V-U1 0 0 4 0
NZ_CP015267 Mycobacterium chimaera strain ZUERICH-2 chromosome, complete genome 6 crisprs DEDDh,cas3,csa3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal 1 0 9 0
NZ_CP015270 Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 3, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP015269 Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 2, complete sequence 0 crisprs csf3gr5,csf2gr7,csf4gr11,csf1gr8 0 0 2 0
NZ_CP015271 Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 4, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP015267
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015267_1 1678229-1678307 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015267_2 2680871-2680984 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015267_3 3956044-3956152 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015267_4 3962330-3962445 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015267_5 4350430-4350526 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015267_6 4907003-4907136 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP015267_3 3.1|3956082|33|NZ_CP015267|CRISPRCasFinder 3956082-3956114 33 NZ_CP015267.1 3956154-3956186 2 0.939

1. spacer 3.1|3956082|33|NZ_CP015267|CRISPRCasFinder matches to position: 3956154-3956186, mismatch: 2, identity: 0.939

gcctcggtggggttgcccttactaggcgtggtg	CRISPR spacer
gcctcggtggggttgcccttactcgccgtggtg	Protospacer
*********************** * *******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 712988 : 849562 103 Mycobacterium_phage(40.0%) integrase,transposase attL 778117:778132|attR 786075:786090
DBSCAN-SWA_2 882341 : 959628 56 Staphylococcus_phage(50.0%) integrase,transposase attL 879934:879949|attR 915729:915744
DBSCAN-SWA_3 963164 : 1008295 31 Corynebacterium_phage(50.0%) integrase,transposase attL 953178:953194|attR 998780:998796
DBSCAN-SWA_4 2030766 : 2110964 51 Tupanvirus(44.44%) integrase,transposase attL 2028640:2028699|attR 2082667:2084793
DBSCAN-SWA_5 2679731 : 2702103 24 Enterobacteria_phage(50.0%) holin,integrase,transposase attL 2681038:2681057|attR 2712750:2712769
DBSCAN-SWA_6 2909446 : 2976667 51 Catovirus(12.5%) protease,integrase,transposase attL 2899384:2899401|attR 2981882:2981899
DBSCAN-SWA_7 3844683 : 3853770 8 Shahe_endorna-like_virus(50.0%) NA NA
DBSCAN-SWA_8 4630300 : 4636876 7 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_9 5197052 : 5205698 8 Burkholderia_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP015268
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2989 5 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_2 12569 : 80565 62 Mycobacterium_phage(63.64%) protease,transposase,integrase attL 28192:28207|attR 77276:77291
DBSCAN-SWA_3 84063 : 143063 47 Mycobacterium_phage(50.0%) protease,transposase,integrase attL 102806:102857|attR 143064:143115
DBSCAN-SWA_4 162664 : 163240 1 Tupanvirus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP015270
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 13170 4 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_2 18254 : 18848 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_3 22820 : 29428 5 Mycobacterium_phage(50.0%) transposase NA
DBSCAN-SWA_4 35641 : 36940 1 Shahe_endorna-like_virus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP015269
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 34003 : 45066 11 Mycobacterium_phage(88.89%) NA NA
DBSCAN-SWA_2 59353 : 129660 60 Mycobacterium_phage(33.33%) protease,transposase,integrase attL 48535:48594|attR 131798:133380
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage