CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022393	Escherichia coli strain E62 chromosome, complete genome	5 crisprs	csa3,DEDDh,c2c9_V-U4,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	0	18	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022393_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022393_1

1942766-1942859

Orphan

Consensus_repeat	Method
CGATGTAACAACGCGCACAGATCAGTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022393_1

>merge|NZ_CP022393|1|1942766-1942859|CRISPRCasFinder
CGATGTAACAACGCGCACAGATCAGTCCCCAGGCTCCTTTGGGGAGAGGGAGAAAAGCGGTGCGCGATGTAACAACGCGCACAAATCAGTCCCC

>NZ_CP022393|1|1|1942766-1942859|CRISPRCasFinder
CGATGTAACAACGCGCACAGATCAGTCCCC	AGGCTCCTTTGGGGAGAGGGAGAAAAGCGGTGCG
CGATGTAACAACGCGCACAAATCAGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022393.1\|WP_000512950.1\|1938380_1938716_+\|flagellar-biosynthesis-protein-FlgB	unknown	unknown	gnl\|CDD\|183682
NZ_CP022393.1\|WP_000009749.1\|1937561_1938299_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|235863
NZ_CP022393.1\|WP_000949083.1\|1949926_1950841_+\|lateral-flagellin-LafA	unknown	unknown	gnl\|CDD\|380229
NZ_CP022393.1\|WP_000367230.1\|1945229_1946606_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|180871
NZ_CP022393.1\|WP_000010950.1\|1938718_1939150_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|180702
NZ_CP022393.1\|WP_000867179.1\|1944741_1945041_+\|rod-binding-protein	unknown	unknown	gnl\|CDD\|139168
NZ_CP022393.1\|WP_001266808.1\|1946620_1947550_+\|flagellar-hook-associated-protein-3	unknown	unknown	gnl\|CDD\|235956
NZ_CP022393.1\|WP_000375456.1\|1941088_1941826_+\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP022393.1\|WP_001181878.1\|1943641_1944742_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP022393.1\|WP_000705394.1\|1937202_1937481_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP022393.1\|WP_039022758.1\|1939149_1939863_+\|flagellar-hook-capping-protein	unknown	unknown	gnl\|CDD\|181996
NZ_CP022393.1\|WP_000285319.1\|1952385_1952778_+\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|376819
NZ_CP022393.1\|WP_001195935.1\|1947566_1948544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022393.1\|WP_000027811.1\|1936761_1937190_-\|flagellar-protein-FlgN	unknown	unknown	gnl\|CDD\|377465
NZ_CP022393.1\|WP_000609676.1\|1951046_1952363_+\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|236141
NZ_CP022393.1\|WP_089180194.1\|1939886_1941089_+\|flagellar-basal-body-protein-FlaE	unknown	unknown	gnl\|CDD\|235862
NZ_CP022393.1\|WP_000990540.1\|1941904_1942690_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP022393.1\|WP_000008066.1\|1935705_1936635_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022393.1\|WP_000022360.1\|1948598_1949441_-\|CadC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
NZ_CP022393.1\|WP_000800868.1\|1942961_1943627_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|183507

Protein	Function_ID	Function_description	E-value
NZ_CP022393.1\|WP_000512950.1\|1938380_1938716_+\|flagellar-biosynthesis-protein-FlgB	gnl\|CDD\|183682	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed.	2.04924e-48
NZ_CP022393.1\|WP_000009749.1\|1937561_1938299_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|235863	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA.	3.25336e-58
NZ_CP022393.1\|WP_000949083.1\|1949926_1950841_+\|lateral-flagellin-LafA	gnl\|CDD\|380229	NF033376, flg_lateral_LafA, lateral flagellin LafA. This HMM describes rare second type of flagellin from E. coli and some closely related species, called LafA, where the familiar and common flagellin, FliC, is nearly universal and carries the H-antigen used for serotyping strains. In contrast to FliC, whose center region is highly variable, LafA shows little variability in sequence. In many E. coli strains, the Flag-2 locus either is absent or is cryptic, appearing degraded and non-functional.	1.60894e-115
NZ_CP022393.1\|WP_000367230.1\|1945229_1946606_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|180871	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated.	1.2944e-151
NZ_CP022393.1\|WP_000010950.1\|1938718_1939150_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|180702	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed.	9.2042e-83
NZ_CP022393.1\|WP_000867179.1\|1944741_1945041_+\|rod-binding-protein	gnl\|CDD\|139168	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed.	7.76803e-23
NZ_CP022393.1\|WP_001266808.1\|1946620_1947550_+\|flagellar-hook-associated-protein-3	gnl\|CDD\|235956	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed.	4.34657e-80
NZ_CP022393.1\|WP_000375456.1\|1941088_1941826_+\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	2.87537e-118
NZ_CP022393.1\|WP_001181878.1\|1943641_1944742_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP022393.1\|WP_000705394.1\|1937202_1937481_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	5.86204e-09
NZ_CP022393.1\|WP_039022758.1\|1939149_1939863_+\|flagellar-hook-capping-protein	gnl\|CDD\|181996	PRK09619, flgD, flagellar hook assembly protein FlgD.	1.18213e-60
NZ_CP022393.1\|WP_000285319.1\|1952385_1952778_+\|flagellar-export-chaperone-FliS	gnl\|CDD\|376819	pfam02561, FliS, Flagellar protein FliS. FliS is coded for by the FliD operon and is transcribed in conjunction with FliD and FliT, however this protein has no known function.	1.6531e-37
NZ_CP022393.1\|WP_000027811.1\|1936761_1937190_-\|flagellar-protein-FlgN	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	1.52237e-11
NZ_CP022393.1\|WP_000609676.1\|1951046_1952363_+\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|236141	PRK08032, fliD, flagellar capping protein; Reviewed.	2.30861e-39
NZ_CP022393.1\|WP_089180194.1\|1939886_1941089_+\|flagellar-basal-body-protein-FlaE	gnl\|CDD\|235862	PRK06803, flgE, flagellar basal body protein FlaE.	1.98031e-161
NZ_CP022393.1\|WP_000990540.1\|1941904_1942690_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	9.70839e-141
NZ_CP022393.1\|WP_000022360.1\|1948598_1949441_-\|CadC-family-transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	2.57421e-18
NZ_CP022393.1\|WP_000800868.1\|1942961_1943627_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|183507	PRK12407, flgH, flagellar basal body L-ring protein FlgH.	4.51802e-161

>NZ_CP022393.1|WP_000990540.1|1941904_1942690_+|flagellar-basal-body-rod-protein-FlgG
MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQYISQTL
>NZ_CP022393.1|WP_000375456.1|1941088_1941826_+|flagellar-basal-body-rod-protein-FlgF
MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATNDKVKGGGFDTRYMAQEGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQLTIDGNLVLGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLEKNAEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDISDAGNRLLRGS
>NZ_CP022393.1|WP_089180194.1|1939886_1941089_+|flagellar-basal-body-protein-FlaE
MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKVYATYSNGERMLQGLVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPDSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM
>NZ_CP022393.1|WP_039022758.1|1939149_1939863_+|flagellar-hook-capping-protein
MNTLALNAQSPQPTATAESNNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNLVGDDIMVQTTALQVSGQTINGRATLDDACTTADLHFTDAAGDDYTVSLIPQGSSSVGPGQVDFSVNPADYGIPPGDYDVSVVTNTGEEEVPIEVSGEVEDVRIPLDGSSPVLNVAGVGEVPFTMISQFGVPDADSDVA
>NZ_CP022393.1|WP_000010950.1|1938718_1939150_+|flagellar-basal-body-rod-protein-FlgC
MSFTDIYQISGSAMTAQTLRLNTVASNLANANAPASSEAQAYKARSPVFAAVYHHSLLAGTHRHAIDSASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDFETNVDVLNNVKSMQQSLLKLGEA
>NZ_CP022393.1|WP_000512950.1|1938380_1938716_+|flagellar-biosynthesis-protein-FlgB
MGISFQQALGVHPQAVKLRLERTELLTANLANVDTPNFKAKDIDFAREMQRANNAAVDVQYRVPMQPSEDGNTVELNSEQARFSQNSMDYQSSLTFLNLQISGIREAIEGK
>NZ_CP022393.1|WP_000009749.1|1937561_1938299_-|flagellar-basal-body-P-ring-formation-protein-FlgA
MSFQFCRRKFYFLLALALPGYAAVHPVQHSAREQVNAQVLNAASQKIESLAQQRQWHDYRYTFKIYIPSQIATAAPCTKTPGVTLTSPAEIALNRMNFTVSCPQSWQMNVAVRPDVLVPVVMTKSLVARDMPLTANDVELKPYNVSAQRRDVLMELDDAIGLSSKHALQPGRPITKEELVSPVLVGRDQPVMIVYQSAGITASMPGVALKNGRKGEMVKVRNASSQRVISAMVAESGVVTTVSAE
>NZ_CP022393.1|WP_000705394.1|1937202_1937481_-|flagellar-biosynthesis-anti-sigma-factor-FlgM
MKITPTMPGNRPTATTAGSNQPRKTTATTTTTLSADDITQAGLQSAQQTLNDQQESDIDSDKVAQMQAMLASGSLQVDTEQLASDMLSFFQN
>NZ_CP022393.1|WP_000027811.1|1936761_1937190_-|flagellar-protein-FlgN
MSIRLQQVKALLQGIRDDDALYDSLRERLQRQRICMIRRASEELLAVNEEITHHYEQLHGHSHQRHSLLKMLGVSVNRDGLAQVFAWLPAVQKAAAQQLWQRLEQKAERCKAYNDKNGELLIRQYEFIQSFLGSEADFLYQE
>NZ_CP022393.1|WP_000008066.1|1935705_1936635_-|hypothetical-protein
MSFIECYEPEYVRKFLARHPGSPLYVRKVWKNEIRLSLSLTDIASCEAVLNDVRAFDLQLTYRPVEDNSAELSARDAIVNQVILSTLTLRDLTPELSLYAVGILLSRASKMPGRDGDILARLTTLPLALADHAKKGTLQAQYAQLPPVPQLARQLMTLLGGCAFDWSILPESPRKASLPLQVTLLTLHDANSEALLQQQLQTQWQTTWQQHFATAPWMMRNWLIYRVYHDVIGQTDGADYFPLVCDFYLLRTLISLWTLDGSPLRQEDIFALFAMFERWRASENALLVRQQIQSLCAADPLLSAFSLLT
>NZ_CP022393.1|WP_000800868.1|1942961_1943627_+|flagellar-basal-body-L-ring-protein-FlgH
MKNYLWLVALLPLLSGCESQAILVKKDDAYFAPPKTEAPPPADGRAGGVFETGYNWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNTVDIGAPTIFGHTKDKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPLFPI
>NZ_CP022393.1|WP_001181878.1|1943641_1944742_+|flagellar-basal-body-P-ring-protein-FlgI
MQNWIKAAAIAVSLALPGVVLAQSLESLVNVQGVRENQLVGYSLVVGLDGTGDKNQVKFTNQTITNMLRQFGVQLPNKIDPKVKNVAAVAVSATLPPMYSRGQTIDVTVSSIGDAKSIRGGTLLLTQLHGADGEVYALAQGSVVVGGMNATGASGSSVTVNTPTAGLIPNGATVEREIPSDFQMGDTITLNLKRPSFKDANNIAAAINASFGGIATAQSSTNVTVRAPTSPGARVAFMSQLDDVQVQAEKIRARVVFNSRTGTVVMGDGVALHAAAVSHGSLTVSINETSNVSQPNAFAGGRTAVTPQSNIAVNHARPGVVSLPESSSLKTLVNALNSLGATPDDIMSILQALHEAGALDADLEVI
>NZ_CP022393.1|WP_000867179.1|1944741_1945041_+|rod-binding-protein
MKVNASGGIDGSDALMGPKVQANDIKQAAEQFEAIFLRNMLKEMRKTNELFDSKDNPFNSDSVRMMQGFYDDELCNTLAQQHGIGIAAMIVKQLSPKHK
>NZ_CP022393.1|WP_000367230.1|1945229_1946606_+|flagellar-hook-associated-protein-FlgK
MDMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDSIRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDDNSSLSGGFDNFFAALNEATTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYNQQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSSTIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMASQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSPDESGNSDNLQALINISTEPLEIANLGSVTVGQACSSIISNIGIYSQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDSVLEMCS
>NZ_CP022393.1|WP_001266808.1|1946620_1947550_+|flagellar-hook-associated-protein-3
MRVTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQYQSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMVAALNYQDEDGHYVFGGTINDQPPIVAVDNDGDGVTDSYSYQGNSDHRQTTVSNGVEVDTNVAASDFFGSNLDVLNTLNSLSQELQDPNADPADPQVQSDIQNAVDVVDTASDDLNASIASLGETQNTMSMLSDAQTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNLFSVL
>NZ_CP022393.1|WP_001195935.1|1947566_1948544_+|hypothetical-protein
MQVGLTSSSLATGGAHSAAVSSSTVAPTQAVRQKLPATASEYPASPLITTRPQRYSVQLNDQLTTLQQADHYLGQLEQQLLDYRHSQRKGGQAQNTALMQMLDKRTALSGGAVDRQLQPVLQGEARVTFHSPDLANLVHNPTPGTRMFSVSDGRQTQLSAVMLSEDDSAAQYQTRLTNALRRVGVQVHQQADGISFSTTEKQWPHIERTLSVRTDGDKSAFMPLKTFAEPSEADRLAQSLQQGGAGISQTLESINQQRAQMAVQQEKARQLIDGMSRFPQTENAVQASENLGGVLDSANHNYQVLLQAVNGQARISSQTVRNLLG
>NZ_CP022393.1|WP_000022360.1|1948598_1949441_-|CadC-family-transcriptional-regulator
MSIIINNWRMDPSLNALIHCETGETRRLGEYHFILLETLAKNADVVLSRSYLCAEVWKNRIVGGNSLPTAIHALRVAIDDDGKQQNIIKTIPKKGYLCNKEYVSLPDSSPAKKLIITDQIQETVPEEISSTTPPVTVRKKHKVIMGLALAAAVIFIGSTVGYSHLKSTPDAPQLVKESINSPRIKIFHLSSGKENNSVPLLSQTLAPGKDKLDNLLSAHNMTMTTYYKYVRNRLESDIVLRNQCNGSWQLTFNVEGWQNSDINSAMYQNLEKLLNTLQKC
>NZ_CP022393.1|WP_000949083.1|1949926_1950841_+|lateral-flagellin-LafA
MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVGAESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ
>NZ_CP022393.1|WP_000609676.1|1951046_1952363_+|flagellar-filament-capping-protein-FliD
MINPRTIAQEIAYADVATQAANLQEKQTELDAESSGLDSLSSALSDFQSAVDALNSDTDGPVTFAATSNNDSATVSANSQAQAGSYSFFVEQLAQGQQTTFSMGDDAFSATGTFELTMGDSTMDIDLSAADQNGDGDGFIDASELVNAINDSDDNPGVSAALVKTDGTTTIMLTSDSTGAQSAFSVSVTGHDASNDSTSAPVATDVSSAQDAIIHLGSATGPEITNSSNTFDDVIPGVTMTFTEVSDSDSDLTTFNISEDSSASQEKVQTFVDAYNTLIDTVDSLTTHGDDSTSAGVFAGDAGLSSLANQLDDIAHASYNGVSIVDYGITLDSHGHLQIDSDQFNDEMAKNPDGLTSIFVGDNSMVAQMDDLINTYTDSSNGIITLRQQNIDDQMSKIQDEGDQLTDTYNANYDRYLEEYTNTLVEVYTMKASMAAFA
>NZ_CP022393.1|WP_000285319.1|1952385_1952778_+|flagellar-export-chaperone-FliS
MYQVQDGYSQYKEIDLAARTAAASPLELVLVLFSGLMDELERAKSHIEGRRFEKKAQSINKCIDILNALTSSLEFETGGELVVNLSRLYDHCVYRLYEASGELSAEKIDEVMLILSNLREGWEGLSGKLG

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Crispr_ID: NZ_CP022393_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022393_2

2231252-2231348

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022393_2

>merge|NZ_CP022393|2|2231252-2231348|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>NZ_CP022393|2|2|2231252-2231348|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022393.1\|WP_000912345.1\|2234496_2235882_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP022393.1\|WP_000540996.1\|2223146_2223932_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
NZ_CP022393.1\|WP_000988366.1\|2238869_2239562_+\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP022393.1\|WP_000729160.1\|2236760_2237627_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP022393.1\|WP_000855388.1\|2230324_2231218_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP022393.1\|WP_000580875.1\|2226565_2228233_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP022393.1\|WP_001297443.1\|2223942_2225178_-\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP022393.1\|WP_000815522.1\|2231412_2232480_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP022393.1\|WP_001297442.1\|2220549_2221851_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP022393.1\|WP_000190288.1\|2236546_2236759_-\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP022393.1\|WP_001676376.1\|2221872_2223018_+\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP022393.1\|WP_000495365.1\|2228242_2229502_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP022393.1\|WP_000256002.1\|2233828_2234323_-\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP022393.1\|WP_001297445.1\|2229512_2230328_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP022393.1\|WP_000006887.1\|2219131_2220493_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP022393.1\|WP_000703894.1\|2225199_2226249_-\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP022393.1\|WP_039022804.1\|2239592_2242202_+\|fimbrial-biogenesis-usher-protein	unknown	unknown	gnl\|CDD\|185120
NZ_CP022393.1\|WP_000212252.1\|2233103_2233826_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP022393.1\|WP_001143552.1\|2235917_2236439_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP022393.1\|WP_001295318.1\|2232476_2232986_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119

Protein	Function_ID	Function_description	E-value
NZ_CP022393.1\|WP_000912345.1\|2234496_2235882_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP022393.1\|WP_000540996.1\|2223146_2223932_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	4.3298e-152
NZ_CP022393.1\|WP_000988366.1\|2238869_2239562_+\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	5.84958e-149
NZ_CP022393.1\|WP_000729160.1\|2236760_2237627_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP022393.1\|WP_000855388.1\|2230324_2231218_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP022393.1\|WP_000580875.1\|2226565_2228233_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP022393.1\|WP_001297443.1\|2223942_2225178_-\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP022393.1\|WP_000815522.1\|2231412_2232480_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.21739e-179
NZ_CP022393.1\|WP_001297442.1\|2220549_2221851_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP022393.1\|WP_000190288.1\|2236546_2236759_-\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP022393.1\|WP_001676376.1\|2221872_2223018_+\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP022393.1\|WP_000495365.1\|2228242_2229502_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.8369e-131
NZ_CP022393.1\|WP_000256002.1\|2233828_2234323_-\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.40187e-121
NZ_CP022393.1\|WP_001297445.1\|2229512_2230328_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.68465e-37
NZ_CP022393.1\|WP_000006887.1\|2219131_2220493_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP022393.1\|WP_000703894.1\|2225199_2226249_-\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP022393.1\|WP_039022804.1\|2239592_2242202_+\|fimbrial-biogenesis-usher-protein	gnl\|CDD\|185120	PRK15198, PRK15198, outer membrane usher protein FimD.	0
NZ_CP022393.1\|WP_000212252.1\|2233103_2233826_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.37025e-165
NZ_CP022393.1\|WP_001143552.1\|2235917_2236439_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.06651e-30
NZ_CP022393.1\|WP_001295318.1\|2232476_2232986_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91

>NZ_CP022393.1|WP_000855388.1|2230324_2231218_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP022393.1|WP_001297445.1|2229512_2230328_+|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLTAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP022393.1|WP_000495365.1|2228242_2229502_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP022393.1|WP_000580875.1|2226565_2228233_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLSDASLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAITPASSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIRPLSPATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP022393.1|WP_000703894.1|2225199_2226249_-|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP022393.1|WP_001297443.1|2223942_2225178_-|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVILSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPHPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP022393.1|WP_000540996.1|2223146_2223932_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP022393.1|WP_001676376.1|2221872_2223018_+|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQVLVANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGATLVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP022393.1|WP_001297442.1|2220549_2221851_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTVLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLGMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP022393.1|WP_000006887.1|2219131_2220493_+|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>NZ_CP022393.1|WP_000815522.1|2231412_2232480_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP022393.1|WP_001295318.1|2232476_2232986_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP022393.1|WP_000212252.1|2233103_2233826_-|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP022393.1|WP_000256002.1|2233828_2234323_-|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP022393.1|WP_000912345.1|2234496_2235882_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP022393.1|WP_001143552.1|2235917_2236439_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMVLMGMLWWRRR
>NZ_CP022393.1|WP_000190288.1|2236546_2236759_-|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP022393.1|WP_000729160.1|2236760_2237627_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP022393.1|WP_000988366.1|2238869_2239562_+|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>NZ_CP022393.1|WP_039022804.1|2239592_2242202_+|fimbrial-biogenesis-usher-protein
MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQITLLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQATYGTLGIGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPGS

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Crispr_ID: NZ_CP022393_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022393_3

4192796-4192884

Orphan

Consensus_repeat	Method
CGTTGGACAACCGTTGGACAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022393_3

>merge|NZ_CP022393|3|4192796-4192884|CRISPRCasFinder
TTATGGACAACCGTTGGACAACCGTTGGACAATCTCCGCTGAGAGGCGCGCCATTACTGGTGTTTGCGTTGGACAACCGTTGGACAACC

>NZ_CP022393|3|3|4192796-4192884|CRISPRCasFinder
TTATGGACAACCGTTGGACAACC	GTTGGACAATCTCCGCTGAGAGGCGCGCCATTACTGGTGTTTG
CGTTGGACAACCGTTGGACAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022393.1\|WP_023157010.1\|4189319_4189910_-\|MT-A70-protein	unknown	unknown	gnl\|CDD\|227069
NZ_CP022393.1\|WP_089180277.1\|4195621_4195921_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022393.1\|WP_032217731.1\|4187829_4188441_-\|recombination-protein-NinG	unknown	unknown	gnl\|CDD\|368603
NZ_CP022393.1\|WP_000924601.1\|4188602_4189004_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022393.1\|WP_089180272.1\|4186983_4187649_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277367
NZ_CP022393.1\|WP_000428318.1\|4194149_4194866_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP022393.1\|WP_000333101.1\|4196424_4196625_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022393.1\|WP_001243355.1\|4197868_4198021_+\|host-cell-division-inhibitory-peptide-Kil	unknown	unknown	gnl\|CDD\|310716
NZ_CP022393.1\|WP_089180276.1\|4194885_4195254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022393.1\|WP_089180278.1\|4196759_4197728_+\|cell-envelope-biogenesis-protein-TolA	unknown	unknown	gnl\|CDD\|173412
NZ_CP022393.1\|WP_000424164.1\|4193461_4193740_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|336083
NZ_CP022393.1\|WP_000638547.1\|4197752_4197884_+\|protease-FtsH-inhibitory-lysogeny-factor-CIII	unknown	unknown	gnl\|CDD\|280268
NZ_CP022393.1\|WP_000620665.1\|4193848_4194043_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370262
NZ_CP022393.1\|WP_000113772.1\|4189006_4189183_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|283078
NZ_CP022393.1\|WP_157719151.1\|4190962_4192399_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP022393.1\|WP_000144614.1\|4187626_4187833_-\|protein-ninH	unknown	unknown	gnl\|CDD\|283883
NZ_CP022393.1\|WP_032217726.1\|4190560_4190887_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022393.1\|WP_032217729.1\|4189906_4190347_-\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_CP022393.1\|WP_089180273.1\|4188433_4188643_-\|protein-ninF	unknown	unknown	gnl\|CDD\|283468
NZ_CP022393.1\|WP_042098811.1\|4195929_4196253_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022393.1\|WP_023157010.1\|4189319_4189910_-\|MT-A70-protein	gnl\|CDD\|227069	COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription].	6.95115e-30
NZ_CP022393.1\|WP_032217731.1\|4187829_4188441_-\|recombination-protein-NinG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	1.19719e-91
NZ_CP022393.1\|WP_000638547.1\|4197752_4197884_+\|protease-FtsH-inhibitory-lysogeny-factor-CIII	gnl\|CDD\|280268	pfam02061, Lambda_CIII, Lambda Phage CIII. The CIII protein from bacteriophage lambda is an inhibitor of the FtsH peptidase.	2.1015e-09
NZ_CP022393.1\|WP_089180272.1\|4186983_4187649_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|277367	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.75245e-113
NZ_CP022393.1\|WP_000428318.1\|4194149_4194866_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	2.95923e-31
NZ_CP022393.1\|WP_001243355.1\|4197868_4198021_+\|host-cell-division-inhibitory-peptide-Kil	gnl\|CDD\|310716	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein. This family consists of several Bacteriophage lambda Kil protein like sequences from both phages and bacteria. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of the lambda kil gene.	2.78295e-13
NZ_CP022393.1\|WP_089180278.1\|4196759_4197728_+\|cell-envelope-biogenesis-protein-TolA	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	1.41676e-09
NZ_CP022393.1\|WP_000424164.1\|4193461_4193740_-\|transcriptional-regulator	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	6.54898e-38
NZ_CP022393.1\|WP_000620665.1\|4193848_4194043_-\|hypothetical-protein	gnl\|CDD\|370262	pfam09048, Cro, Cro. Members of this family are involved in the repression of transcription by binding as a homodimer to palindromic DNA operator sites in phage lambda: they repress genes expressed in early phage development and are necessary for the late stage of lytic growth. These proteins have a secondary structure consisting of three alpha-helices and three beta-sheets, and dimerize through interactions between the two antiparallel beta-strands.	2.07947e-25
NZ_CP022393.1\|WP_000113772.1\|4189006_4189183_-\|NinE-family-protein	gnl\|CDD\|283078	pfam05322, NinE, NINE Protein. This family consists of NINE proteins from several bacteriophages and from E. coli.	6.0732e-25
NZ_CP022393.1\|WP_157719151.1\|4190962_4192399_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NZ_CP022393.1\|WP_000144614.1\|4187626_4187833_-\|protein-ninH	gnl\|CDD\|283883	pfam06322, Phage_NinH, Phage NinH protein. This family consists of several phage NinH proteins. The function of this family is unknown.	1.96496e-35
NZ_CP022393.1\|WP_032217729.1\|4189906_4190347_-\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	4.81603e-57
NZ_CP022393.1\|WP_089180273.1\|4188433_4188643_-\|protein-ninF	gnl\|CDD\|283468	pfam05810, NinF, NinF protein. This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.	8.40512e-23

>NZ_CP022393.1|WP_157719151.1|4190962_4192399_-|AAA-family-ATPase
MTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVRKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVDGLTLFDELERKSLTVSVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQSIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGEQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRLSEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKSLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGNTGTVYCIQANGAIYDTDQQSAEMRRREREEPQSKKKGGF
>NZ_CP022393.1|WP_032217726.1|4190560_4190887_-|hypothetical-protein
MADWQIPIIILAGASLVAGFILLKKHKDRDQKVEVLYGYPANCTTWLTIYHYRKSGRWVFEWDDLFAEKRPKSWGDISECMMFEERKSGATREEFNEAWRRLSERGYQ
>NZ_CP022393.1|WP_032217729.1|4189906_4190347_-|recombination-protein-NinB
MRKLTFELRSPIHQQNAIQAIQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAGSWKCVFTAALKQQDVVPNLAGNGFVVIGQSTSRMRVSEFAELLELIQAFGTEHGVKWSDEARLALEWKARWGDKTE
>NZ_CP022393.1|WP_023157010.1|4189319_4189910_-|MT-A70-protein
MNKYRLIYADPPWQYRDKANDGNRGAGHKYDVMNVQDICRLPVWDLADPESCLLAMWWVPTQPAEALKVVEAWGFRLMTMKGFTWHKTNKHKGNSAIGMGHMTRANSEDCLFAVRGRLPERMDASICQHFTAPRMEHSAKPPIVRDMLAKLLGDVPRCELFSRDKVTGWDMWGNQCDSDFELATGMAIKPCKMVIA
>NZ_CP022393.1|WP_000113772.1|4189006_4189183_-|NinE-family-protein
MARQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRHRARK
>NZ_CP022393.1|WP_000924601.1|4188602_4189004_-|hypothetical-protein
MLLIQPGFGLSIKKGHMFGEKESQRKMVSIRLPFISIYWLNREATNYWYTCARAAFNDPDWFVKNHHAVRQAKRKANMTYMKAYQKAWKEHRDRYQQDMEKLESENMELRRKLGEAKRDIDAYKRLFNGESHA
>NZ_CP022393.1|WP_089180273.1|4188433_4188643_-|protein-ninF
MLTSDFLMVKAMLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMSDPNSSIYEEEDDG
>NZ_CP022393.1|WP_032217731.1|4187829_4188441_-|recombination-protein-NinG
MAKPARRRCKNDECQEWFHPAFANQWWCSPECGTKIALERRSKEREKAEKAAEKKRRREEQKQKDKLKIRKLALKPRSYWIKQAQQAVNAFIRERDRDLPCISCGTLTSAQWDAGHYRTTAAAPQLRFDERNIHKQCVVCNQHKSGNLVPYRVELINRIGQEAVDEIESNHNRHRWTIEECKAIKAEYQQKLKDLRNSRSEAA
>NZ_CP022393.1|WP_000144614.1|4187626_4187833_-|protein-ninH
MTFSVKTIPDMLVEAYGNQTEVARRLKCSRGTVRKYVDDKDGKMHAIVNDVLMVHRGWSERDALLRKN
>NZ_CP022393.1|WP_089180272.1|4186983_4187649_-|serine/threonine-protein-phosphatase
MRYYERIDGSKYRNIWVVGDLHGCYTNLMKKLETIGFDTKKDLLISVGDLVDRGTENVECLELITFHWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKGKKYVICHADYPCDEYEFGKPVDHQQVIWNRERISNSQDGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGEGS
>NZ_CP022393.1|WP_000424164.1|4193461_4193740_-|transcriptional-regulator
MELTSTRKKANAITSNILNRIAVRGQRKVADALGINESQISRWKDSFIPKMGMLLAVLEWGVEDEELAELAKKVARMLTKEKAPKNGEFFEA
>NZ_CP022393.1|WP_000620665.1|4193848_4194043_-|hypothetical-protein
MIRMTLADYAKIHGQAKAASDFGVIQCAISKAILAGRNIMVTVKPDGSVIGEEVRPFPSNKKNK
>NZ_CP022393.1|WP_000428318.1|4194149_4194866_+|helix-turn-helix-domain-containing-protein
MENKKSLTTEQLEDAKRLKALYESKKKELGITQYSIADELGITQGAVGHYLNGRNALNVEVASGFARLLQVSIADFSQSIAAKVAEQAESLKSDANVRYAGEYRAGKRYPVLSSIQAGSWCEACEPYTIKDIDVWLESDAHIQGNAFWLKVEGDSMTAPVGLSIPEGTFVLFDTGREAINGSLVIAKLSDSNEATFKKLIIDGGNKYLKGLNPAWPLVPINGNCKIIGVAIETKLRLV
>NZ_CP022393.1|WP_089180276.1|4194885_4195254_+|hypothetical-protein
MVGTAIASFFGMLAISTIYGLAHAFITKSLSEKISQAWTHRSARFMILVVIAIQGISAFILYGSSLYLLYQGATFTPYTSDYGTLYDGSEDISMAWIVFGLSMAVSVVADIIKVILVLTFAD
>NZ_CP022393.1|WP_089180277.1|4195621_4195921_+|hypothetical-protein
MTVVITYLADDNARNRRRARRQAQREQAMQEQRLARKIELKLSGCVRADKAASLGSLRCKKAEEVERKQNRIYYRKPRSEMGVTCVGRQKMKLGSKPLI
>NZ_CP022393.1|WP_042098811.1|4195929_4196253_+|hypothetical-protein
MEALVVERSEDGYWTHPEYANLFGDREVISADEFRSFCKQHGIESSIVEMENDNNQTVIDSYFEDGNPNISGWEPSMPDGEGWFVGSIHDTEDGPICVWFRNVDKAA
>NZ_CP022393.1|WP_000333101.1|4196424_4196625_+|hypothetical-protein
MCEFYEADIKRPEMASDATLRDYFAAKAMQAMISNPSIIDNDSDGAVNYAASAAYKFADAMLKARE
>NZ_CP022393.1|WP_089180278.1|4196759_4197728_+|cell-envelope-biogenesis-protein-TolA
MSEVTDLVVIEKSNAMTVFQSADQIEEILQKVEREVMSFVPDITTAKGRKEIASLAYKVAQTKTYLDGLGKDLVAELKEIPKLIDANRKTVRDRLDELKAKARQPLTDYEEEQALIKAEEEAKAAAEALAKQIESDHEIAILMDREFDRQREEARLKAEQEKREHEERLKREAEEKARAEAEAKAKAEIEAAARREAEAKAAAERAERERIEAEQRAQREAKEAAERAEREKHAAIEAERRKAQEEAERIRREAEAKEQARIAEEKRIKDEEERRAKDKAHRKEVNNKILADLIKVGASEDVAKNIITAIVKGEVFATKITY
>NZ_CP022393.1|WP_000638547.1|4197752_4197884_+|protease-FtsH-inhibitory-lysogeny-factor-CIII
MIYAIAGGARMGAFQLNESLLERITRKLRDGWKRVEVLLCAMK
>NZ_CP022393.1|WP_001243355.1|4197868_4198021_+|host-cell-division-inhibitory-peptide-Kil
MRNEIAINHQMLRAAQNKAVIARFIGDSKMWLEANKAMKSAINLPWYRRK

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Crispr_ID: NZ_CP022393_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022393_4

4632724-4633608

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

14 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP022393_4

>merge|NZ_CP022393|4|4632724-4633608|CRISPRCasFinder,CRT,PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACACAAAACCAAACTTCTCCATAAATTCCATAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGTCTATCAGCGACACTACCGGCAATAGCGACGGTTTATCCCCGCTGGCGCGGGGAACACCTATAGCGCCACGTTCCGAGCGCTGCGAGCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGGCCTATGCGTTTTTCTCTCTGTTAATGCGCCCCCGGTTTATCCCCGCTGGCGCGGGGAACACCTAATGAGTCAGTTTGAACAGATCCCCGACAACGGTTTATCCCCGCTGGCGCGGGGAACACGGCTTTAAAATTGTGTTCCCGTCTGGCGCTGGGGGTTTATCCCCGCTGGCGCGGGGAACACGAGAGTGCTGACAGGTGTCTCGATTACCTGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGGTCCATGGCACACAGGATCCAGACGTTAACGGTTTATCCCCGCTGGCGCGGGGAACACACGATGGCGATGCGTGAGAAAGGGGGTCGATACGGTTTATCCCCGCTGGCGCGGGGAACACAGTTCGCTGAGTAGCCTTTTTTCTGTGCCTAACGGTTTATCCCCGCTGGCGCGGGGAACACGAGGTGGCAATACGCGTAGATCATTTGGTCGTCGGTTTATCCCCGCTGGCGCGGGGAACACCAAAATATTACGAGCTTCGTCAGGCCATGGACCGGTTTATCCCCGCTGGCGCGGGGAACACGTAACGTCTGCCTTTTCCTCGTCCGCCTTAATCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGTCATTCTGGCGGTAAAATCGATCTGCCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP022393|4|4|4632724-4633608|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCTATCAGCGACACTACCGGCAATAGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTATAGCGCCACGTTCCGAGCGCTGCGAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCTATGCGTTTTTCTCTCTGTTAATGCGCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAATGAGTCAGTTTGAACAGATCCCCGACAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCTTTAAAATTGTGTTCCCGTCTGGCGCTGG
GGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGGTCCATGGCACACAGGATCCAGACGTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGATGGCGATGCGTGAGAAAGGGGGTCGATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCGCTGAGTAGCCTTTTTTCTGTGCCTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTGGCAATACGCGTAGATCATTTGGTCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAATATTACGAGCTTCGTCAGGCCATGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTAACGTCTGCCTTTTCCTCGTCCGCCTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGTCATTCTGGCGGTAAAATCGATCTGCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP022393|4|1|4632724-4633608|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCTATCAGCGACACTACCGGCAATAGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTATAGCGCCACGTTCCGAGCGCTGCGAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCTATGCGTTTTTCTCTCTGTTAATGCGCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAATGAGTCAGTTTGAACAGATCCCCGACAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCTTTAAAATTGTGTTCCCGTCTGGCGCTGG
GGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGGTCCATGGCACACAGGATCCAGACGTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGATGGCGATGCGTGAGAAAGGGGGTCGATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCGCTGAGTAGCCTTTTTTCTGTGCCTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTGGCAATACGCGTAGATCATTTGGTCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAATATTACGAGCTTCGTCAGGCCATGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTAACGTCTGCCTTTTCCTCGTCCGCCTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGTCATTCTGGCGGTAAAATCGATCTGCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP022393|4|1|4632846-4633608|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTATAGCGCCACGTTCCGAGCGCTGCGAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCTATGCGTTTTTCTCTCTGTTAATGCGCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAATGAGTCAGTTTGAACAGATCCCCGACAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCTTTAAAATTGTGTTCCCGTCTGGCGCTGG
GGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGGTCCATGGCACACAGGATCCAGACGTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGATGGCGATGCGTGAGAAAGGGGGTCGATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCGCTGAGTAGCCTTTTTTCTGTGCCTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTGGCAATACGCGTAGATCATTTGGTCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAATATTACGAGCTTCGTCAGGCCATGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTAACGTCTGCCTTTTCCTCGTCCGCCTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGTCATTCTGGCGGTAAAATCGATCTGCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022393.1\|WP_000568943.1\|4625278_4626328_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP022393.1\|WP_000490429.1\|4631604_4632642_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP022393.1\|WP_001472109.1\|4624536_4625298_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP022393.1\|WP_000144863.1\|4633997_4634918_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP022393.1\|WP_001246104.1\|4628037_4628361_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP022393.1\|WP_001084096.1\|4637903_4639466_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP022393.1\|WP_000063176.1\|4633704_4633998_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP022393.1\|WP_000517476.1\|4627532_4627844_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP022393.1\|WP_000206441.1\|4636303_4637359_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP022393.1\|WP_000956458.1\|4642455_4642608_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP022393.1\|WP_089180315.1\|4635546_4636293_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP022393.1\|WP_000029329.1\|4637370_4637907_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP022393.1\|WP_000039843.1\|4642872_4643607_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP022393.1\|WP_001219242.1\|4626324_4626804_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP022393.1\|WP_000246138.1\|4626803_4627514_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP022393.1\|WP_001090348.1\|4629015_4630443_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP022393.1\|WP_001233972.1\|4639563_4642263_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP022393.1\|WP_000372108.1\|4630444_4631353_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP022393.1\|WP_001173673.1\|4628410_4629016_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP022393.1\|WP_000281455.1\|4634914_4635565_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869

Protein	Function_ID	Function_description	E-value
NZ_CP022393.1\|WP_000568943.1\|4625278_4626328_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP022393.1\|WP_000490429.1\|4631604_4632642_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP022393.1\|WP_001472109.1\|4624536_4625298_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	4.76981e-150
NZ_CP022393.1\|WP_000144863.1\|4633997_4634918_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.23259e-157
NZ_CP022393.1\|WP_001246104.1\|4628037_4628361_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP022393.1\|WP_001084096.1\|4637903_4639466_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP022393.1\|WP_000063176.1\|4633704_4633998_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP022393.1\|WP_000517476.1\|4627532_4627844_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP022393.1\|WP_000206441.1\|4636303_4637359_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.03601e-154
NZ_CP022393.1\|WP_000956458.1\|4642455_4642608_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP022393.1\|WP_089180315.1\|4635546_4636293_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.18865e-47
NZ_CP022393.1\|WP_000029329.1\|4637370_4637907_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
NZ_CP022393.1\|WP_000039843.1\|4642872_4643607_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP022393.1\|WP_001219242.1\|4626324_4626804_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP022393.1\|WP_000246138.1\|4626803_4627514_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP022393.1\|WP_001090348.1\|4629015_4630443_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP022393.1\|WP_001233972.1\|4639563_4642263_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.59818e-180
NZ_CP022393.1\|WP_000372108.1\|4630444_4631353_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP022393.1\|WP_001173673.1\|4628410_4629016_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP022393.1\|WP_000281455.1\|4634914_4635565_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.33324e-91

>NZ_CP022393.1|WP_000490429.1|4631604_4632642_+|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP022393.1|WP_000372108.1|4630444_4631353_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP022393.1|WP_001090348.1|4629015_4630443_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP022393.1|WP_001173673.1|4628410_4629016_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP022393.1|WP_001246104.1|4628037_4628361_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP022393.1|WP_000517476.1|4627532_4627844_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP022393.1|WP_000246138.1|4626803_4627514_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP022393.1|WP_001219242.1|4626324_4626804_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP022393.1|WP_000568943.1|4625278_4626328_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP022393.1|WP_001472109.1|4624536_4625298_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGSRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPDTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP022393.1|WP_000063176.1|4633704_4633998_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP022393.1|WP_000144863.1|4633997_4634918_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPQPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>NZ_CP022393.1|WP_000281455.1|4634914_4635565_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRPFVSELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVKGQAEGRDIWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENTRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP022393.1|WP_089180315.1|4635546_4636293_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDTPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDTLRNAYQQYQDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP022393.1|WP_000206441.1|4636303_4637359_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTDYASFDVMNKQGSMKDVLDFICA
>NZ_CP022393.1|WP_000029329.1|4637370_4637907_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP022393.1|WP_001084096.1|4637903_4639466_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWQDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP022393.1|WP_001233972.1|4639563_4642263_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKEGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNQYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGLQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>NZ_CP022393.1|WP_000956458.1|4642455_4642608_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP022393.1|WP_000039843.1|4642872_4643607_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP022393_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022393_5

4659307-4660128

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

13 spacers

The CRISPR arrays of NZ_CP022393_5

>merge|NZ_CP022393|5|4659307-4660128|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCGCCTGACATTGCAGACGTTACAAATTGAGAGGCGGTTTATCCCCGCTGGCGCGGGGAACTCTACTGCTCCGCTGGCGTTTCTCCCTCGCCCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCTCATTTCCCATGCAAAATGCTGCATTCCTGGCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGTGGCAGGCCGGTAATATGAAAACGACAGAGCGGTTTATCCCCGCTGGCGCGGGGAACTCATCTTCTTGTTCAGGAACGTCAGTAGAGGTGTCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCATTAACCCCCACCAGCTCGACGTGTGTGGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGGGCGTTAACGCGGTGATACTGTTTGACGGCGGTTTATCCCCGCTGGCGCGGGGAACTCACCGAGCGCCGCTGGGAGGCGTATCTCACGTTCGGTTTATCCCCGCTGGCGCGGGGAACTCTGAATGATCGGAAAGACGCTGCAAAGGCAATGCGGTTTATCCCCGCTGGCGCGGGGAACTCTACCAAACCGGAATCGCTCCATATAACGGCGGCGGTTTATCCCCGCTGGCGCGGGGAACTCCAACCCGGCGGCACGGTCAATCGTTGCGTCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCGACTCAAAACGGCGCAGGTCAAAATCGTTCAACGGTTTATCCCCGCTGGCGCGGGGAACTCGGTGAATACTGCGGCAGGCGCTGCGGGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP022393|5|5|4659307-4660128|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCTGACATTGCAGACGTTACAAATTGAGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACTGCTCCGCTGGCGTTTCTCCCTCGCCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCATTTCCCATGCAAAATGCTGCATTCCTGGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTGGCAGGCCGGTAATATGAAAACGACAGAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCATTAACCCCCACCAGCTCGACGTGTGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGCGTTAACGCGGTGATACTGTTTGACGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACCGAGCGCCGCTGGGAGGCGTATCTCACGTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGAATGATCGGAAAGACGCTGCAAAGGCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACCAAACCGGAATCGCTCCATATAACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CAACCCGGCGGCACGGTCAATCGTTGCGTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GACTCAAAACGGCGCAGGTCAAAATCGTTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGTGAATACTGCGGCAGGCGCTGCGGGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP022393|5|2|4659307-4660128|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCTGACATTGCAGACGTTACAAATTGAGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACTGCTCCGCTGGCGTTTCTCCCTCGCCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCATTTCCCATGCAAAATGCTGCATTCCTGGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTGGCAGGCCGGTAATATGAAAACGACAGAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCATTAACCCCCACCAGCTCGACGTGTGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGCGTTAACGCGGTGATACTGTTTGACGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACCGAGCGCCGCTGGGAGGCGTATCTCACGTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGAATGATCGGAAAGACGCTGCAAAGGCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACCAAACCGGAATCGCTCCATATAACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CAACCCGGCGGCACGGTCAATCGTTGCGTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GACTCAAAACGGCGCAGGTCAAAATCGTTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGTGAATACTGCGGCAGGCGCTGCGGGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP022393|5|2|4659308-4660128|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CCTGACATTGCAGACGTTACAAATTGAGAGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	ACTGCTCCGCTGGCGTTTCTCCCTCGCCCAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	CATTTCCCATGCAAAATGCTGCATTCCTGGCC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GTGGCAGGCCGGTAATATGAAAACGACAGAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	TCTTCTTGTTCAGGAACGTCAGTAGAGGTGTC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GCATTAACCCCCACCAGCTCGACGTGTGTGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CGGGCGTTAACGCGGTGATACTGTTTGACGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	CCGAGCGCCGCTGGGAGGCGTATCTCACGTTC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	GAATGATCGGAAAGACGCTGCAAAGGCAATGC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	ACCAAACCGGAATCGCTCCATATAACGGCGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCC	AACCCGGCGGCACGGTCAATCGTTGCGTCAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	ACTCAAAACGGCGCAGGTCAAAATCGTTCAAC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	GTGAATACTGCGGCAGGCGCTGCGGGAATTGC
GGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022393.1\|WP_001130266.1\|4649489_4650065_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP022393.1\|WP_000254745.1\|4666476_4666812_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP022393.1\|WP_001098105.1\|4651826_4653164_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP022393.1\|WP_000186450.1\|4670777_4673534_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP022393.1\|WP_000109367.1\|4649212_4649473_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP022393.1\|WP_000039712.1\|4657189_4658668_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP022393.1\|WP_001349983.1\|4647950_4649222_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP022393.1\|WP_001299097.1\|4650212_4651073_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP022393.1\|WP_001199973.1\|4660467_4661139_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP022393.1\|WP_001299652.1\|4651069_4651849_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP022393.1\|WP_000036723.1\|4662363_4663662_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP022393.1\|WP_000046785.1\|4669419_4670721_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP022393.1\|WP_001071648.1\|4665614_4666406_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP022393.1\|WP_000210878.1\|4663749_4665387_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP022393.1\|WP_000226815.1\|4667137_4669372_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP022393.1\|WP_000021321.1\|4654781_4655567_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP022393.1\|WP_000581937.1\|4666811_4667060_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP022393.1\|WP_001164567.1\|4655885_4657163_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP022393.1\|WP_000059312.1\|4653257_4654712_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP022393.1\|WP_001288227.1\|4661277_4661418_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022393.1\|WP_001130266.1\|4649489_4650065_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP022393.1\|WP_000254745.1\|4666476_4666812_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP022393.1\|WP_001098105.1\|4651826_4653164_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
NZ_CP022393.1\|WP_000109367.1\|4649212_4649473_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	8.55479e-42
NZ_CP022393.1\|WP_000039712.1\|4657189_4658668_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	8.33202e-110
NZ_CP022393.1\|WP_001349983.1\|4647950_4649222_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	3.72406e-126
NZ_CP022393.1\|WP_001299097.1\|4650212_4651073_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
NZ_CP022393.1\|WP_001199973.1\|4660467_4661139_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP022393.1\|WP_001299652.1\|4651069_4651849_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
NZ_CP022393.1\|WP_000036723.1\|4662363_4663662_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP022393.1\|WP_000046785.1\|4669419_4670721_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP022393.1\|WP_001071648.1\|4665614_4666406_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP022393.1\|WP_000210878.1\|4663749_4665387_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP022393.1\|WP_000226815.1\|4667137_4669372_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP022393.1\|WP_000021321.1\|4654781_4655567_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.84461e-140
NZ_CP022393.1\|WP_000581937.1\|4666811_4667060_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP022393.1\|WP_001164567.1\|4655885_4657163_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	3.44047e-29
NZ_CP022393.1\|WP_000059312.1\|4653257_4654712_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
NZ_CP022393.1\|WP_000186450.1\|4670777_4673534_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0

>NZ_CP022393.1|WP_000039712.1|4657189_4658668_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWTWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP022393.1|WP_001164567.1|4655885_4657163_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP022393.1|WP_000021321.1|4654781_4655567_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP022393.1|WP_000059312.1|4653257_4654712_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP022393.1|WP_001098105.1|4651826_4653164_-|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP022393.1|WP_001299652.1|4651069_4651849_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP022393.1|WP_001299097.1|4650212_4651073_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP022393.1|WP_001130266.1|4649489_4650065_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP022393.1|WP_000109367.1|4649212_4649473_+|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP022393.1|WP_001349983.1|4647950_4649222_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDILQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP022393.1|WP_001199973.1|4660467_4661139_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP022393.1|WP_001288227.1|4661277_4661418_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP022393.1|WP_000036723.1|4662363_4663662_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP022393.1|WP_000210878.1|4663749_4665387_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP022393.1|WP_001071648.1|4665614_4666406_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP022393.1|WP_000254745.1|4666476_4666812_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP022393.1|WP_000581937.1|4666811_4667060_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP022393.1|WP_000226815.1|4667137_4669372_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP022393.1|WP_000046785.1|4669419_4670721_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPKLEALLPKVRACLGSLQVMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP022393.1|WP_000186450.1|4670777_4673534_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022393_1	1.1\|1942796\|34\|NZ_CP022393\|CRISPRCasFinder	1942796-1942829	34	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	9856-9889	0	1.0
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	NC_016160	Escherichia phage HK75, complete genome	28600-28642	1	0.977
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	NC_019705	Enterobacteria phage mEpX2, complete genome	29054-29096	1	0.977
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	NC_019711	Enterobacteria phage HK629, complete genome	37177-37219	1	0.977
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	KY979108	Escherichia phage ECP1, complete genome	435-477	1	0.977
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	NC_019719	Enterobacteria phage HK633, complete genome	31748-31790	1	0.977
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	JF974339	Enterobacteria phage IME10, complete genome	9731-9773	1	0.977
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	NC_005344	Enterobacteria phage Sf6, complete genome	28418-28460	1	0.977
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	NC_019715	Enterobacterial phage mEp234, complete genome	30416-30458	2	0.953
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	NC_019769	Enterobacteria phage HK542, complete genome	29183-29225	2	0.953
NZ_CP022393_3	3.1\|4192819\|43\|NZ_CP022393\|CRISPRCasFinder	4192819-4192861	43	NC_019768	Enterobacteria phage HK106, complete genome	32712-32754	2	0.953
NZ_CP022393_4	4.11\|4633365\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633365-4633396	32	NC_028662	Mycobacterium phage Phlei, complete genome	44891-44922	5	0.844
NZ_CP022393_4	4.1\|4632753\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4632753-4632784	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
NZ_CP022393_1	1.1\|1942796\|34\|NZ_CP022393\|CRISPRCasFinder	1942796-1942829	34	NZ_CP010866	Marinovum algicola DG 898 plasmid pMaD11, complete sequence	5770-5803	8	0.765
NZ_CP022393_4	4.3\|4632875\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4632875-4632906	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1022602-1022633	8	0.75
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_CP013379	Burkholderia pseudomultivorans strain SUB-INT23-BP2 plasmid pINT23, complete sequence	67130-67161	8	0.75
NZ_CP022393_5	5.5\|4659580\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4659580-4659611	32	MK016501	Mycobacterium phage Nebkiss, complete genome	21454-21485	8	0.75
NZ_CP022393_5	5.5\|4659580\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4659580-4659611	32	NC_026590	Mycobacterium phage Gaia, complete genome	21453-21484	8	0.75
NZ_CP022393_5	5.7\|4659702\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4659702-4659733	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	121002-121033	8	0.75
NZ_CP022393_5	5.18\|4659581\|32\|NZ_CP022393\|PILER-CR	4659581-4659612	32	MK016501	Mycobacterium phage Nebkiss, complete genome	21454-21485	8	0.75
NZ_CP022393_5	5.18\|4659581\|32\|NZ_CP022393\|PILER-CR	4659581-4659612	32	NC_026590	Mycobacterium phage Gaia, complete genome	21453-21484	8	0.75
NZ_CP022393_5	5.20\|4659703\|32\|NZ_CP022393\|PILER-CR	4659703-4659734	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	121002-121033	8	0.75
NZ_CP022393_4	4.3\|4632875\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4632875-4632906	32	MT932212	Salmonella phage VSe13, complete genome	11034-11065	9	0.719
NZ_CP022393_4	4.7\|4633121\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633121-4633152	32	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	32377-32408	9	0.719
NZ_CP022393_5	5.12\|4660007\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4660007-4660038	32	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	224225-224256	9	0.719
NZ_CP022393_5	5.12\|4660007\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4660007-4660038	32	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	35673-35704	9	0.719
NZ_CP022393_5	5.13\|4660068\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4660068-4660099	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	302507-302538	9	0.719
NZ_CP022393_5	5.25\|4660008\|32\|NZ_CP022393\|PILER-CR	4660008-4660039	32	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	224225-224256	9	0.719
NZ_CP022393_5	5.25\|4660008\|32\|NZ_CP022393\|PILER-CR	4660008-4660039	32	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	35673-35704	9	0.719
NZ_CP022393_5	5.26\|4660069\|32\|NZ_CP022393\|PILER-CR	4660069-4660100	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	302507-302538	9	0.719
NZ_CP022393_4	4.12\|4633426\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633426-4633457	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	903982-904013	10	0.688
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000053	Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence	134870-134901	10	0.688
NZ_CP022393_4	4.12\|4633426\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633426-4633457	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1467285-1467316	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KX388535	Agrobacterium tumefaciens strain EU6 plasmid pTiEU6, complete sequence	5851-5882	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000059	Agrobacterium tumefaciens strain CFBP1898 plasmid pTi_CFBP1898, complete sequence	5579-5610	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_CP042277	Agrobacterium tumefaciens strain 186 plasmid pTi, complete sequence	129898-129929	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_CP032929	Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence	170602-170633	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_CP039927	Agrobacterium tumefaciens strain CFBP7129 plasmid pTiCFBP7129, complete sequence	142276-142307	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NC_002147	Agrobacterium tumefaciens MAFF301001 plasmid pTi-SAKURA, complete sequence	182605-182636	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_CP032925	Agrobacterium tumefaciens strain 1D1108 plasmid pTi1D1108, complete sequence	128534-128565	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_CP030831	Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence	10415-10446	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_CP033026	Agrobacterium fabrum strain 1D132 plasmid pTi1D132, complete sequence	129538-129569	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NC_003065	Agrobacterium fabrum str. C58 plasmid Ti, complete sequence	8961-8992	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_MK439382	Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence	8977-9008	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_MK439383	Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence	8977-9008	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_MK439386	Agrobacterium tumefaciens strain T37 plasmid pTiT37, complete sequence	8971-9002	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_MK318986	Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence	175687-175718	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_MK439385	Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence	8962-8993	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_MK439384	Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence	8977-9008	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_MK439381	Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence	8977-9008	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_MF511177	Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence	175687-175718	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000039	Agrobacterium deltaense strain Tun180 plasmid pTi_Tun180, complete sequence	198401-198432	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000064	Agrobacterium tumefaciens strain CFBP7126 plasmid pTi_CFBP7126, complete sequence	136740-136771	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000069	Agrobacterium deltaense strain Tun176 plasmid pTi_Tun176, complete sequence	174225-174256	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000058	Agrobacterium rhizogenes strain CFBP1317 plasmid pTi_CFBP1317, complete sequence	5657-5688	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000068	Agrobacterium deltaense strain Tun151 plasmid pTi_Tun151, complete sequence	190394-190425	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000070	Agrobacterium tumefaciens strain Tun178 plasmid pTi_Tun178, complete sequence	106432-106463	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000027	Agrobacterium rhizogenes strain CFBP2692 plasmid pTi_CFBP2692, complete sequence	5591-5622	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000031	Agrobacterium genomosp. 1 strain Tun198 plasmid pTi_Tun198, complete sequence	94589-94620	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000041	Agrobacterium tumefaciens strain CFBP296 plasmid pTi_CFBP296, complete sequence	30756-30787	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000065	Agrobacterium tumefaciens strain CFBP7128 plasmid pTi_CFBP7128, complete sequence	143730-143761	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000028	Agrobacterium genomosp. 1 strain CFBP2712 plasmid pTi_CFBP2712, complete sequence	181533-181564	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000066	Agrobacterium deltaense strain CFBP7129 plasmid pTi_CFBP7129, complete sequence	150915-150946	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000044	Agrobacterium fabrum strain CFBP1933 plasmid pTi_CFBP1933, complete sequence	168783-168814	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000050	Agrobacterium tumefaciens strain CFBP4442 plasmid pTi_CFBP4442, complete sequence	109623-109654	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000062	Agrobacterium genomosp. 3 strain CFBP4424 plasmid pTi_CFBP4424, complete sequence	3141-3172	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000073	Agrobacterium tumefaciens strain Tun188 plasmid pTi_Tun188, complete sequence	2864-2895	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000052	Agrobacterium tumefaciens strain CFBP7000 plasmid pTi_CFBP7000, complete sequence	187538-187569	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000057	Agrobacterium fabrum strain CFBP5505 plasmid pTi_CFBP5505, complete sequence	8696-8727	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000049	Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence	135226-135257	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000055	Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence	215648-215679	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000071	Agrobacterium tumefaciens strain Tun183 plasmid pTi_Tun183, complete sequence	109976-110007	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000043	Agrobacterium rhizogenes strain CFBP1905 plasmid pTi_CFBP1905, complete sequence	143903-143934	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000048	Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence	55040-55071	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000054	Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence	152626-152657	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000047	Agrobacterium genomosp. 1 strain CFBP2516 plasmid pTi_CFBP2516, complete sequence	95691-95722	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000046	Agrobacterium genomosp. 1 strain CFBP2177 plasmid pTi_CFBP2177, complete sequence	5759-5790	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000051	Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence	27325-27356	11	0.656
NZ_CP022393_4	4.13\|4633487\|32\|NZ_CP022393\|CRISPRCasFinder,CRT,PILER-CR	4633487-4633518	32	NZ_KY000063	Agrobacterium fabrum strain CFBP6549 plasmid pTi_CFBP6549, complete sequence	129423-129454	11	0.656
NZ_CP022393_5	5.6\|4659641\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4659641-4659672	32	KU160664	Arthrobacter phage Salgado, complete genome	140-171	11	0.656
NZ_CP022393_5	5.6\|4659641\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4659641-4659672	32	MF140418	Arthrobacter phage LiSara, complete genome	140-171	11	0.656
NZ_CP022393_5	5.6\|4659641\|32\|NZ_CP022393\|CRISPRCasFinder,CRT	4659641-4659672	32	KU160654	Arthrobacter phage Laroye, complete genome	140-171	11	0.656
NZ_CP022393_5	5.19\|4659642\|32\|NZ_CP022393\|PILER-CR	4659642-4659673	32	KU160664	Arthrobacter phage Salgado, complete genome	140-171	11	0.656
NZ_CP022393_5	5.19\|4659642\|32\|NZ_CP022393\|PILER-CR	4659642-4659673	32	MF140418	Arthrobacter phage LiSara, complete genome	140-171	11	0.656
NZ_CP022393_5	5.19\|4659642\|32\|NZ_CP022393\|PILER-CR	4659642-4659673	32	KU160654	Arthrobacter phage Laroye, complete genome	140-171	11	0.656

1. spacer 1.1|1942796|34|NZ_CP022393|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 0, identity: 1.0

aggctcctttggggagagggagaaaagcggtgcg	CRISPR spacer
aggctcctttggggagagggagaaaagcggtgcg	Protospacer
**********************************

2. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to NC_016160 (Escherichia phage HK75, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************** ********************

3. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to NC_019705 (Enterobacteria phage mEpX2, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************** ********************

4. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagacgcgccattactggtgtttg	Protospacer
**********************.********************

5. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to KY979108 (Escherichia phage ECP1, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************** ********************

6. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to NC_019719 (Enterobacteria phage HK633, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************** ********************

7. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************** ********************

8. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to NC_005344 (Enterobacteria phage Sf6, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************** ********************

9. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to NC_019715 (Enterobacterial phage mEp234, complete genome) position: , mismatch: 2, identity: 0.953

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagatccgcgccattactggtgtttg	Protospacer
*********************  ********************

10. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to NC_019769 (Enterobacteria phage HK542, complete genome) position: , mismatch: 2, identity: 0.953

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcaccattactggtgtttg	Protospacer
********************** ***.****************

11. spacer 3.1|4192819|43|NZ_CP022393|CRISPRCasFinder matches to NC_019768 (Enterobacteria phage HK106, complete genome) position: , mismatch: 2, identity: 0.953

gttggacaatctccgctgagaggcgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagatccgcgccattactggtgtttg	Protospacer
*********************  ********************

12. spacer 4.11|4633365|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NC_028662 (Mycobacterium phage Phlei, complete genome) position: , mismatch: 5, identity: 0.844

-gaggtggcaatacgcgtagatcatttggtcgt	CRISPR spacer
agagctcgc-atacgcgtagagcgtttggtcgt	Protospacer
 *** * ** *********** *.*********

13. spacer 4.1|4632753|32|NZ_CP022393|CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

14. spacer 1.1|1942796|34|NZ_CP022393|CRISPRCasFinder matches to NZ_CP010866 (Marinovum algicola DG 898 plasmid pMaD11, complete sequence) position: , mismatch: 8, identity: 0.765

aggctcctttggggagagggagaaaagc-ggtgcg	CRISPR spacer
gtccggctttgtggcgagggagaaaagcgggtgc-	Protospacer
.  *  ***** ** ************* *****

15. spacer 4.3|4632875|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 8, identity: 0.75

ctatagcgccacgttccgagcgctgcgagctg	CRISPR spacer
ttgtggaaccacggtccgagcgctgcgatctc	Protospacer
.*.*.* .***** ************** **

16. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013379 (Burkholderia pseudomultivorans strain SUB-INT23-BP2 plasmid pINT23, complete sequence) position: , mismatch: 8, identity: 0.75

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
gccgcgtcggcctttttctcgtccgcctcgct	Protospacer
*. .**** *******.***********.. *

17. spacer 5.5|4659580|32|NZ_CP022393|CRISPRCasFinder,CRT matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 8, identity: 0.75

atcttcttgttcaggaacgtcagtagaggtgt	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgt	Protospacer
**   . .***********.****.*******

18. spacer 5.5|4659580|32|NZ_CP022393|CRISPRCasFinder,CRT matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 8, identity: 0.75

atcttcttgttcaggaacgtcagtagaggtgt	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgt	Protospacer
**   . .***********.****.*******

19. spacer 5.7|4659702|32|NZ_CP022393|CRISPRCasFinder,CRT matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

gcgggcgttaacgcggtgatactgtttgacgg	CRISPR spacer
ttgatcgttaacgcgatgctactgtttgtggg	Protospacer
 .*. **********.** *********  **

20. spacer 5.18|4659581|32|NZ_CP022393|PILER-CR matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 8, identity: 0.75

atcttcttgttcaggaacgtcagtagaggtgt	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgt	Protospacer
**   . .***********.****.*******

21. spacer 5.18|4659581|32|NZ_CP022393|PILER-CR matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 8, identity: 0.75

atcttcttgttcaggaacgtcagtagaggtgt	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgt	Protospacer
**   . .***********.****.*******

22. spacer 5.20|4659703|32|NZ_CP022393|PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

gcgggcgttaacgcggtgatactgtttgacgg	CRISPR spacer
ttgatcgttaacgcgatgctactgtttgtggg	Protospacer
 .*. **********.** *********  **

23. spacer 4.3|4632875|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to MT932212 (Salmonella phage VSe13, complete genome) position: , mismatch: 9, identity: 0.719

ctatagcgccacgttccgagcgctgcgagctg	CRISPR spacer
cgatagcgccgcgttctgagcgctgatgtttt	Protospacer
* ********.*****.********  . .*

24. spacer 4.7|4633121|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 9, identity: 0.719

gagagtgctgacaggtgtctcgattacctgat	CRISPR spacer
ggctttgctggcaggtctctcgattaccttgg	Protospacer
*.   *****.***** ************ .

25. spacer 5.12|4660007|32|NZ_CP022393|CRISPRCasFinder,CRT matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.719

gactcaaaacggcgcaggtcaaaatcgttcaa	CRISPR spacer
agcgaagcacggcgcgcgtcaaaatcgttcat	Protospacer
..*  *. *******. **************

26. spacer 5.12|4660007|32|NZ_CP022393|CRISPRCasFinder,CRT matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 9, identity: 0.719

gactcaaaacggcgcaggtcaaaatcgttcaa	CRISPR spacer
aactcaagacggcgcagttcaaaaacaaggag	Protospacer
.******.********* ****** *.   *.

27. spacer 5.13|4660068|32|NZ_CP022393|CRISPRCasFinder,CRT matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

ggtgaatactgcggcaggcgctgcgggaattg	CRISPR spacer
gcgccatgctgcgtcaggcgctgcgggacctc	Protospacer
*    **.***** ************** .*

28. spacer 5.25|4660008|32|NZ_CP022393|PILER-CR matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.719

gactcaaaacggcgcaggtcaaaatcgttcaa	CRISPR spacer
agcgaagcacggcgcgcgtcaaaatcgttcat	Protospacer
..*  *. *******. **************

29. spacer 5.25|4660008|32|NZ_CP022393|PILER-CR matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 9, identity: 0.719

gactcaaaacggcgcaggtcaaaatcgttcaa	CRISPR spacer
aactcaagacggcgcagttcaaaaacaaggag	Protospacer
.******.********* ****** *.   *.

30. spacer 5.26|4660069|32|NZ_CP022393|PILER-CR matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

ggtgaatactgcggcaggcgctgcgggaattg	CRISPR spacer
gcgccatgctgcgtcaggcgctgcgggacctc	Protospacer
*    **.***** ************** .*

31. spacer 4.12|4633426|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

caaaatattacgagcttcgtcaggccatggac	CRISPR spacer
tcttgcatcacgagcttcgtcaggacatgcgc	Protospacer
.   ..**.*************** **** .*

32. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000053 (Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence) position: , mismatch: 10, identity: 0.688

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
ttttcgtctcccatttcctcgtccgccgacgc	Protospacer
 *  ***** ** **************   ..

33. spacer 4.12|4633426|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

caaaatattacgagcttcgtcaggccatggac	CRISPR spacer
tcttgcatcacgagcttcgtcaggacatgcgg	Protospacer
.   ..**.*************** **** .

34. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX388535 (Agrobacterium tumefaciens strain EU6 plasmid pTiEU6, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

35. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000059 (Agrobacterium tumefaciens strain CFBP1898 plasmid pTi_CFBP1898, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

36. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042277 (Agrobacterium tumefaciens strain 186 plasmid pTi, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

37. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032929 (Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

38. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039927 (Agrobacterium tumefaciens strain CFBP7129 plasmid pTiCFBP7129, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

39. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NC_002147 (Agrobacterium tumefaciens MAFF301001 plasmid pTi-SAKURA, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

40. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032925 (Agrobacterium tumefaciens strain 1D1108 plasmid pTi1D1108, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

41. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030831 (Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

42. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033026 (Agrobacterium fabrum strain 1D132 plasmid pTi1D132, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

43. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NC_003065 (Agrobacterium fabrum str. C58 plasmid Ti, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

44. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK439382 (Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

45. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK439383 (Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

46. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK439386 (Agrobacterium tumefaciens strain T37 plasmid pTiT37, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

47. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK318986 (Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

48. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK439385 (Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

49. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK439384 (Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

50. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK439381 (Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

51. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF511177 (Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

52. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000039 (Agrobacterium deltaense strain Tun180 plasmid pTi_Tun180, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

53. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000064 (Agrobacterium tumefaciens strain CFBP7126 plasmid pTi_CFBP7126, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

54. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000069 (Agrobacterium deltaense strain Tun176 plasmid pTi_Tun176, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

55. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000058 (Agrobacterium rhizogenes strain CFBP1317 plasmid pTi_CFBP1317, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

56. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000068 (Agrobacterium deltaense strain Tun151 plasmid pTi_Tun151, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

57. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000070 (Agrobacterium tumefaciens strain Tun178 plasmid pTi_Tun178, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

58. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000027 (Agrobacterium rhizogenes strain CFBP2692 plasmid pTi_CFBP2692, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

59. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000031 (Agrobacterium genomosp. 1 strain Tun198 plasmid pTi_Tun198, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

60. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000041 (Agrobacterium tumefaciens strain CFBP296 plasmid pTi_CFBP296, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

61. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000065 (Agrobacterium tumefaciens strain CFBP7128 plasmid pTi_CFBP7128, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

62. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000028 (Agrobacterium genomosp. 1 strain CFBP2712 plasmid pTi_CFBP2712, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

63. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000066 (Agrobacterium deltaense strain CFBP7129 plasmid pTi_CFBP7129, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

64. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000044 (Agrobacterium fabrum strain CFBP1933 plasmid pTi_CFBP1933, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

65. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000050 (Agrobacterium tumefaciens strain CFBP4442 plasmid pTi_CFBP4442, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

66. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000062 (Agrobacterium genomosp. 3 strain CFBP4424 plasmid pTi_CFBP4424, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

67. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000073 (Agrobacterium tumefaciens strain Tun188 plasmid pTi_Tun188, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

68. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000052 (Agrobacterium tumefaciens strain CFBP7000 plasmid pTi_CFBP7000, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

69. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000057 (Agrobacterium fabrum strain CFBP5505 plasmid pTi_CFBP5505, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

70. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000049 (Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

71. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000055 (Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

72. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000071 (Agrobacterium tumefaciens strain Tun183 plasmid pTi_Tun183, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

73. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000043 (Agrobacterium rhizogenes strain CFBP1905 plasmid pTi_CFBP1905, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

74. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000048 (Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

75. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000054 (Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

76. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000047 (Agrobacterium genomosp. 1 strain CFBP2516 plasmid pTi_CFBP2516, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

77. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000046 (Agrobacterium genomosp. 1 strain CFBP2177 plasmid pTi_CFBP2177, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

78. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000051 (Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

79. spacer 4.13|4633487|32|NZ_CP022393|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000063 (Agrobacterium fabrum strain CFBP6549 plasmid pTi_CFBP6549, complete sequence) position: , mismatch: 11, identity: 0.656

gtaacgtctgccttttcctcgtccgccttaat	CRISPR spacer
tcttcgtctcccatttcctcgtccgccgacgc	Protospacer
 .  ***** ** **************   ..

80. spacer 5.6|4659641|32|NZ_CP022393|CRISPRCasFinder,CRT matches to KU160664 (Arthrobacter phage Salgado, complete genome) position: , mismatch: 11, identity: 0.656

agcattaacccccaccagctcgacgtgtgtgg	CRISPR spacer
tacattcacccccaccagcccgacgccccgtt	Protospacer
 .**** ************.*****. .

81. spacer 5.6|4659641|32|NZ_CP022393|CRISPRCasFinder,CRT matches to MF140418 (Arthrobacter phage LiSara, complete genome) position: , mismatch: 11, identity: 0.656

agcattaacccccaccagctcgacgtgtgtgg	CRISPR spacer
tacattcacccccaccagcccgacgccccgtt	Protospacer
 .**** ************.*****. .

82. spacer 5.6|4659641|32|NZ_CP022393|CRISPRCasFinder,CRT matches to KU160654 (Arthrobacter phage Laroye, complete genome) position: , mismatch: 11, identity: 0.656

agcattaacccccaccagctcgacgtgtgtgg	CRISPR spacer
tacattcacccccaccagcccgacgccccgtt	Protospacer
 .**** ************.*****. .

83. spacer 5.19|4659642|32|NZ_CP022393|PILER-CR matches to KU160664 (Arthrobacter phage Salgado, complete genome) position: , mismatch: 11, identity: 0.656

agcattaacccccaccagctcgacgtgtgtgg	CRISPR spacer
tacattcacccccaccagcccgacgccccgtt	Protospacer
 .**** ************.*****. .

84. spacer 5.19|4659642|32|NZ_CP022393|PILER-CR matches to MF140418 (Arthrobacter phage LiSara, complete genome) position: , mismatch: 11, identity: 0.656

agcattaacccccaccagctcgacgtgtgtgg	CRISPR spacer
tacattcacccccaccagcccgacgccccgtt	Protospacer
 .**** ************.*****. .

85. spacer 5.19|4659642|32|NZ_CP022393|PILER-CR matches to KU160654 (Arthrobacter phage Laroye, complete genome) position: , mismatch: 11, identity: 0.656

agcattaacccccaccagctcgacgtgtgtgg	CRISPR spacer
tacattcacccccaccagcccgacgccccgtt	Protospacer
 .**** ************.*****. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

990024 : 1042121

Escherichia_phage(25.0%)

protease,transposase,tail,integrase,tRNA

attL 989841:989857|attR 999187:999203

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
989841:989857	attL	NA	NA	NA	NA
WP_000829625.1\|990024_991260_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	5.5e-123	54.2
WP_001439227.1\|991554_991734_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000754198.1\|991742_992024_+	hypothetical protein	NA	NA	NA	NA
WP_024218759.1\|992115_993696_+	virulence-associated E family protein	A0A088FVF8	Escherichia_phage	1.3e-150	66.0
WP_024218758.1\|993705_993930_+	hypothetical protein	NA	NA	NA	NA
WP_024218757.1\|993944_994262_-	hypothetical protein	NA	NA	NA	NA
WP_001101855.1\|994696_995581_+	hypothetical protein	NA	NA	NA	NA
WP_000270230.1\|995583_995898_+	hypothetical protein	NA	NA	NA	NA
WP_000892848.1\|996148_996598_+	hypothetical protein	NA	NA	NA	NA
WP_089180156.1\|996607_996814_+	hypothetical protein	NA	NA	NA	NA
WP_053897538.1\|996835_999109_+\|tail	phage tail tape measure protein	D5LGY4	Escherichia_phage	6.2e-274	65.3
WP_000462905.1\|999186_999483_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
999187:999203	attR	NA	NA	NA	NA
WP_001219652.1\|999508_1000474_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_001145827.1\|1000802_1001684_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_001175728.1\|1001695_1003147_-	sodium/pantothenate symporter	NA	NA	NA	NA
WP_000381170.1\|1003136_1003379_-	YhdT family protein	NA	NA	NA	NA
WP_000884622.1\|1003487_1004837_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_000354622.1\|1004847_1005318_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_001148478.1\|1006295_1007270_-	oxidoreductase	NA	NA	NA	NA
WP_001241436.1\|1007421_1009362_+	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_000913396.1\|1009666_1010710_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_000802516.1\|1010775_1011879_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_000179409.1\|1011878_1012367_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_000203096.1\|1012375_1012969_+	nucleoside triphosphate pyrophosphatase YhdE	NA	NA	NA	NA
WP_000123197.1\|1012958_1014428_+	ribonuclease G	NA	NA	NA	NA
WP_001253561.1\|1014495_1018296_+	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_000055909.1\|1018725_1020171_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_000440317.1\|1020304_1021234_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_000051841.1\|1021416_1021620_+	AaeX family protein	NA	NA	NA	NA
WP_000854033.1\|1021627_1022560_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_000510962.1\|1022565_1024533_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_001029013.1\|1024624_1024897_+	barnase inhibitor	NA	NA	NA	NA
WP_000695690.1\|1024952_1025216_-	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_001257846.1\|1025580_1026051_-	transcriptional regulator ArgR	NA	NA	NA	NA
WP_001297453.1\|1026485_1027424_+	malate dehydrogenase	NA	NA	NA	NA
WP_000497723.1\|1027486_1028554_-	outer membrane-stress sensor serine endopeptidase DegS	A0A1S5Y2X3	uncultured_archaeal_virus	6.8e-05	24.2
WP_001295271.1\|1028643_1030011_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	2.3e-21	25.6
WP_001295270.1\|1030164_1030563_-	DUF1043 family protein	NA	NA	NA	NA
WP_001192307.1\|1030756_1031884_+	cell division protein ZapE	NA	NA	NA	NA
WP_000847559.1\|1032102_1032531_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_000829818.1\|1032546_1032939_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_000257293.1\|1033333_1033972_+	stringent starvation protein A	NA	NA	NA	NA
WP_000366129.1\|1033977_1034475_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.3e-26	42.9
WP_000467002.1\|1034517_1035885_-	anaerobic C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_000523844.1\|1036264_1037056_+	transcriptional regulator NanR	NA	NA	NA	NA
WP_000224714.1\|1037177_1038071_+	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_000108459.1\|1038179_1039670_+	sialic acid transporter NanT	Q6JIH2	Burkholderia_virus	4.9e-09	23.6
WP_000054239.1\|1039717_1040407_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_000209017.1\|1040403_1041279_+	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_000979880.1\|1041275_1041740_+	DUF386 domain-containing protein	NA	NA	NA	NA
WP_000639208.1\|1041815_1042121_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1347665 : 1383547

Stx2-converting_phage(63.64%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063073952.1\|1347665_1348994_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_000624722.1\|1350522_1350873_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|1350869_1351295_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_077793116.1\|1351497_1351869_-	response regulator transcription factor	NA	NA	NA	NA
WP_089180331.1\|1351964_1356272_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	8.5e-131	37.9
WP_154813316.1\|1357651_1358053_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_000557618.1\|1357985_1358243_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_074151803.1\|1358335_1358599_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_089180173.1\|1359177_1360407_+	autotransporter strand-loop-strand O-heptosyltransferase	NA	NA	NA	NA
WP_089180174.1\|1360390_1363738_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_089180175.1\|1363891_1365463_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	8.4e-169	58.5
WP_089180176.1\|1365482_1365830_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	7.0e-44	73.8
WP_089180177.1\|1365829_1366477_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.7e-20	45.2
WP_061892120.1\|1369134_1369482_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	8.2e-61	99.1
WP_089180332.1\|1369478_1369859_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	1.1e-58	90.5
WP_077875792.1\|1370298_1371954_+	hypothetical protein	NA	NA	NA	NA
WP_073519413.1\|1372218_1372449_+	hypothetical protein	NA	NA	NA	NA
WP_089180178.1\|1372919_1373435_-	hypothetical protein	NA	NA	NA	NA
WP_089180333.1\|1373721_1378503_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	1.1e-152	39.4
WP_073519415.1\|1378781_1379141_+	IS66 family insertion sequence hypothetical protein	B6DZU5	Stx2-converting_phage	2.6e-49	85.6
WP_089180179.1\|1380271_1380910_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_073519417.1\|1381246_1381480_-	response regulator transcription factor	NA	NA	NA	NA
WP_089180180.1\|1382385_1383547_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.4e-50	40.2

DBSCAN-SWA_3

1430673 : 1488546

Pectobacterium_phage(11.11%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000312488.1\|1430673_1431933_+\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_001232412.1\|1431935_1432940_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_001089295.1\|1433021_1433219_+	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_000527955.1\|1433322_1434621_+	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001177644.1\|1434825_1435251_+	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000076325.1\|1435289_1437731_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.1e-66	33.1
WP_001293282.1\|1437910_1438642_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000220137.1\|1438768_1439170_+	DUF2170 family protein	NA	NA	NA	NA
WP_000511955.1\|1439188_1439887_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_000012556.1\|1439937_1440597_+	YjfK family protein	NA	NA	NA	NA
WP_000547764.1\|1440614_1441013_+	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000101654.1\|1441022_1441661_+	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000943992.1\|1441663_1442827_+	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	4.9e-81	43.5
WP_001339483.1\|1442910_1444536_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000811566.1\|1444652_1444928_-\|protease	protease activator YjfN	NA	NA	NA	NA
WP_000254636.1\|1445076_1445406_-	biofilm peroxide resistance protein BsmA	NA	NA	NA	NA
WP_000569708.1\|1445587_1446337_+	esterase	NA	NA	NA	NA
WP_000133631.1\|1446333_1447089_-	HTH-type transcriptional regulator UlaR	NA	NA	NA	NA
WP_001295191.1\|1447196_1448261_-	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
WP_001300695.1\|1448615_1450013_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_000218360.1\|1450028_1450334_+	PTS ascorbate transporter subunit IIB	NA	NA	NA	NA
WP_000776505.1\|1450343_1450808_+	PTS ascorbate transporter subunit IIA	NA	NA	NA	NA
WP_000056760.1\|1450821_1451472_+	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
WP_000949511.1\|1451481_1452336_+	L-ribulose-5-phosphate 3-epimerase UlaE	NA	NA	NA	NA
WP_001170812.1\|1452335_1453022_+	L-ribulose-5-phosphate 4-epimerase UlaF	NA	NA	NA	NA
WP_000996728.1\|1453118_1453670_+	DUF1440 domain-containing protein	NA	NA	NA	NA
WP_000492914.1\|1453744_1454020_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001216676.1\|1454346_1454742_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_001296681.1\|1454748_1455063_+	primosomal replication protein N	NA	NA	NA	NA
WP_000135199.1\|1455067_1455295_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_001196062.1\|1455336_1455786_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_001351393.1\|1455856_1456651_-	DUF2686 family protein	NA	NA	NA	NA
WP_000604912.1\|1457273_1457705_-\|transposase	IS200/IS605-like element IS609 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-43	60.6
WP_001367946.1\|1457712_1458921_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	9.2e-208	93.0
WP_001119478.1\|1459055_1459694_-	cell division protein YtfB	NA	NA	NA	NA
WP_000211225.1\|1459912_1460533_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_000228343.1\|1460841_1462254_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_000331456.1\|1462298_1462961_-	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA
WP_001351395.1\|1463068_1464034_-	DMT family transporter	NA	NA	NA	NA
WP_000560552.1\|1464142_1465003_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_000084622.1\|1465091_1465472_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_089180182.1\|1465600_1467544_-	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
WP_000886909.1\|1467733_1468474_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_000175289.1\|1468463_1469021_-	YtfJ family protein	NA	NA	NA	NA
WP_000689228.1\|1469345_1469552_+	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_000935042.1\|1469613_1470957_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001295196.1\|1471279_1471918_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_001269327.1\|1472123_1473857_+	autotransporter assembly complex protein TamA	NA	NA	NA	NA
WP_000060936.1\|1473853_1477633_+	autotransporter assembly complex protein TamB	NA	NA	NA	NA
WP_089180183.1\|1477635_1477977_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_000055072.1\|1478356_1478887_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	9.4e-56	63.9
WP_000265912.1\|1479196_1480153_+	galactofuranose ABC transporter substrate-binding protein YtfQ	NA	NA	NA	NA
WP_000210559.1\|1480292_1481795_+	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.4e-11	30.3
WP_001351397.1\|1481808_1482831_+	ABC transporter permease	NA	NA	NA	NA
WP_000596015.1\|1482817_1483813_+	sugar ABC transporter permease YjfF	NA	NA	NA	NA
WP_000853753.1\|1483845_1484844_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	5.7e-70	42.7
WP_001219795.1\|1485019_1486393_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_000166270.1\|1486548_1487100_-	ribosome-associated protein	NA	NA	NA	NA
WP_000852988.1\|1487193_1488546_+\|protease	metalloprotease PmbA	NA	NA	NA	NA

DBSCAN-SWA_4

1828506 : 1901644

uncultured_Caudovirales_phage(20.0%)

transposase,protease,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001346129.1\|1828506_1829859_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|1829888_1832321_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|1832442_1832928_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139279.1\|1832931_1833957_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|1834061_1834517_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|1834520_1835309_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000139659.1\|1835308_1836457_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569430.1\|1836453_1837050_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
WP_001294757.1\|1837086_1840569_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000055741.1\|1840581_1841541_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001020973.1\|1841639_1843781_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|1843837_1844227_+	VOC family protein	NA	NA	NA	NA
WP_000176578.1\|1844291_1845590_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|1845638_1845899_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|1845885_1846086_-	YaeP family protein	NA	NA	NA	NA
WP_001185290.1\|1846251_1846797_+	YaeQ family protein	NA	NA	NA	NA
WP_000635545.1\|1846793_1847216_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239192.1\|1847229_1847940_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_001260712.1\|1848971_1850690_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094011.1\|1850801_1851509_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|1851505_1851910_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|1852027_1852843_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|1852882_1853536_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593994.1\|1853528_1854560_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140174.1\|1854747_1855320_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997037.1\|1861069_1861873_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	1.6e-38	36.1
WP_000648576.1\|1861869_1862784_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|1863024_1863825_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211727.1\|1863902_1864673_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_157719141.1\|1864720_1865956_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.3e-09	36.0
WP_001052720.1\|1866161_1866917_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001297210.1\|1866950_1867673_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|1867669_1868137_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001297205.1\|1868201_1868933_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
WP_001086142.1\|1869468_1870254_+	aminopeptidase	NA	NA	NA	NA
WP_047621342.1\|1870390_1870870_-	hypothetical protein	NA	NA	NA	NA
WP_000908057.1\|1870879_1871794_-	hypothetical protein	NA	NA	NA	NA
WP_001284199.1\|1871837_1872320_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001087754.1\|1872343_1873696_-	membrane protein	NA	NA	NA	NA
WP_122986620.1\|1873706_1877141_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001240545.1\|1877249_1878662_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_000088862.1\|1878666_1879410_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_000614399.1\|1879406_1882172_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.8e-81	30.8
WP_000343302.1\|1882180_1882942_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246421.1\|1882946_1884278_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|1884280_1884805_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001113725.1\|1884801_1886082_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000348793.1\|1886106_1887189_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000393854.1\|1887152_1889003_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000611742.1\|1889006_1889420_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000056978.1\|1889426_1890902_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000123970.1\|1890952_1891177_-	hypothetical protein	NA	NA	NA	NA
WP_039022852.1\|1891211_1891712_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001142958.1\|1892410_1892929_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000103304.1\|1893138_1895280_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.7e-26	25.8
WP_000508713.1\|1895355_1899849_+	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.0e-22	46.5
WP_000786991.1\|1899850_1900108_+	hypothetical protein	NA	NA	NA	NA
WP_047621055.1\|1900507_1901644_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3052900 : 3111776

Escherichia_phage(43.14%)

lysis,tail,integrase,tRNA,terminase

attL 3047284:3047300|attR 3088358:3088374

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3047284:3047300	attL	NA	NA	NA	NA
WP_089180337.1\|3052900_3054133_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387388.1\|3054387_3055371_+	zinc transporter ZntB	NA	NA	NA	NA
WP_001296046.1\|3055645_3055819_+	hypothetical protein	NA	NA	NA	NA
WP_000123738.1\|3055848_3057222_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001157407.1\|3057350_3058286_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
WP_000040858.1\|3058337_3059573_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	1.6e-239	98.5
WP_000079604.1\|3059574_3059790_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_021565074.1\|3059868_3060078_-	double-strand break reduction protein RcbA	A0A0U2QL97	Escherichia_phage	8.8e-26	96.8
WP_001317028.1\|3060070_3060265_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_089180219.1\|3060321_3061131_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.2e-105	71.5
WP_047667559.1\|3061123_3063724_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	8.8e-248	63.5
WP_089180220.1\|3063825_3064101_-	hypothetical protein	A0A0U2QW85	Escherichia_phage	1.5e-41	95.6
WP_001352098.1\|3064175_3064346_-	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_000560223.1\|3064345_3064567_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
WP_001312793.1\|3065008_3065497_+	superinfection exclusion protein B	NA	NA	NA	NA
WP_001610067.1\|3065493_3065649_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	8.0e-08	55.3
WP_000233809.1\|3065659_3065794_-	phage protein	NA	NA	NA	NA
WP_000948459.1\|3066102_3066579_-	DNA-binding transcriptional repressor RacR	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
WP_000712069.1\|3066702_3066999_+	toxin YdaS	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
WP_000693797.1\|3067021_3067444_+	phage protein	A0A0U2RXZ9	Escherichia_phage	1.5e-69	95.0
WP_000899746.1\|3067456_3068314_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	8.3e-70	84.5
WP_000788972.1\|3068320_3069067_+	DNA replication protein DnaC	V5UQI5	Shigella_phage	3.8e-111	78.9
WP_076796008.1\|3069866_3070289_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	89.2
WP_000228824.1\|3070472_3071600_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000569066.1\|3071592_3072702_+	DUF3696 domain-containing protein	NA	NA	NA	NA
WP_076796010.1\|3072698_3073676_+	hypothetical protein	NA	NA	NA	NA
WP_021554378.1\|3074304_3074460_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.3e-13	89.6
WP_000940319.1\|3074923_3075523_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0
WP_000247763.1\|3075522_3075813_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.7e-46	87.5
WP_000640161.1\|3075809_3076352_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.9e-76	75.7
WP_061359043.1\|3077395_3077824_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_001348108.1\|3077995_3078370_+	hypothetical protein	NA	NA	NA	NA
WP_000839565.1\|3078620_3078836_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.3e-32	94.4
WP_001135310.1\|3078835_3079333_+	lysozyme	M1FJA0	Enterobacteria_phage	9.3e-90	96.4
WP_001228696.1\|3079549_3079735_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.8e-15	98.2
WP_001703139.1\|3079931_3081389_+	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
WP_016245936.1\|3081526_3082321_+	phage protein	R4TG31	Halovirus	7.5e-49	40.7
WP_001204033.1\|3082313_3083246_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	4.2e-83	54.5
WP_000126788.1\|3083223_3083433_+	hypothetical protein	NA	NA	NA	NA
WP_000089446.1\|3083436_3084531_+	hypothetical protein	A0A0U2RXW9	Escherichia_phage	4.5e-113	80.2
WP_000625347.1\|3084511_3085813_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	8.0e-149	59.8
WP_000763709.1\|3085815_3087222_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	8.8e-186	68.8
WP_089180221.1\|3087205_3088318_+	hypothetical protein	I6PD76	Cronobacter_phage	6.0e-113	54.3
WP_000770042.1\|3088422_3089187_+	hypothetical protein	G8C7P6	Escherichia_phage	6.9e-84	64.2
3088358:3088374	attR	NA	NA	NA	NA
WP_000918487.1\|3089285_3090425_+	hypothetical protein	G8C7P7	Escherichia_phage	7.4e-159	75.0
WP_000634214.1\|3090647_3091043_+	hypothetical protein	NA	NA	NA	NA
WP_000524260.1\|3091042_3091426_+	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
WP_001029815.1\|3091426_3091807_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.1e-18	44.4
WP_000144678.1\|3091803_3092196_+	hypothetical protein	NA	NA	NA	NA
WP_029488565.1\|3092222_3093185_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	2.6e-56	39.2
WP_012565075.1\|3093335_3093695_+	hypothetical protein	NA	NA	NA	NA
WP_001755909.1\|3093802_3094003_+	hypothetical protein	NA	NA	NA	NA
WP_001703076.1\|3094168_3097402_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.3e-104	33.3
WP_000024051.1\|3097394_3097733_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
WP_001152422.1\|3097732_3098431_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.6e-125	93.1
WP_001379783.1\|3098436_3099180_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.0e-146	96.7
WP_000090944.1\|3099116_3099725_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	7.6e-102	94.6
WP_089180222.1\|3099785_3103199_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	98.2
WP_001230375.1\|3103268_3103868_+	Ail/Lom family protein	A0A291AWV3	Escherichia_phage	5.7e-110	98.5
WP_072686566.1\|3103932_3107295_+	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	8.1e-12	36.4
WP_001698950.1\|3107294_3107870_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	94.8
WP_000086527.1\|3107967_3108558_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836768.1\|3108874_3109108_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_157719144.1\|3109176_3109290_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	4.2e-06	77.8
WP_001082294.1\|3110067_3110502_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.0e-28	52.8
WP_000837924.1\|3110642_3111776_-	porin OmpN	Q1MVN1	Enterobacteria_phage	8.3e-118	58.8

DBSCAN-SWA_6

3709774 : 3753656

Escherichia_phage(20.0%)

portal,capsid,terminase,holin,tail,integrase,head,plate

attL 3709350:3709409|attR 3753726:3753802

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3709350:3709409	attL	NA	NA	NA	NA
WP_047620999.1\|3709774_3710785_-\|tail	tail fiber protein	NA	NA	NA	NA
WP_047621001.1\|3710790_3711834_-	phage late control protein	R9TNM7	Vibrio_phage	7.5e-33	29.3
WP_047621003.1\|3711837_3712050_-\|tail	tail protein X	NA	NA	NA	NA
WP_000418460.1\|3712066_3712309_+	superinfection immunity protein	M4MA40	Vibrio_phage	1.8e-06	46.9
WP_047621042.1\|3712287_3712677_-\|tail	phage tail protein	E5FFG4	Burkholderia_phage	5.3e-16	40.3
WP_047621005.1\|3712712_3714353_-	hypothetical protein	A0A2I7R3J9	Vibrio_phage	8.3e-18	27.9
WP_000444666.1\|3714461_3714743_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_039264464.1\|3714755_3715268_-\|tail	phage tail protein	NA	NA	NA	NA
WP_047621009.1\|3715285_3716779_-\|tail	tail sheath protein	K4HZC3	Acidithiobacillus_phage	5.0e-70	37.0
WP_001559300.1\|3716784_3717018_-	hypothetical protein	NA	NA	NA	NA
WP_039264466.1\|3717969_3718596_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	3.1e-26	39.5
WP_039264467.1\|3718598_3719519_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	7.0e-67	47.4
WP_047621011.1\|3719515_3719857_-\|plate	baseplate assembly protein	D4HTV2	Vibrio_phage	1.8e-20	51.6
WP_039264469.1\|3719859_3720762_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_039264470.1\|3720742_3721279_-	hypothetical protein	NA	NA	NA	NA
WP_039264472.1\|3721275_3721956_-	hypothetical protein	NA	NA	NA	NA
WP_039264473.1\|3721987_3722368_-	hypothetical protein	NA	NA	NA	NA
WP_039264474.1\|3722364_3722772_-	DNA-packaging protein	NA	NA	NA	NA
WP_039264475.1\|3722802_3723837_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	9.2e-108	57.4
WP_000206291.1\|3723898_3724228_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-08	39.5
WP_001145891.1\|3724227_3725538_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	5.8e-99	51.7
WP_047621016.1\|3725537_3727109_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	1.6e-188	63.3
WP_012565126.1\|3727105_3727339_-	hypothetical protein	NA	NA	NA	NA
WP_000148194.1\|3727335_3729201_-\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	4.1e-191	53.2
WP_000168116.1\|3729187_3729754_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	7.7e-32	43.5
WP_001559319.1\|3730126_3730372_+	hypothetical protein	NA	NA	NA	NA
WP_039264476.1\|3730688_3730982_+	hypothetical protein	NA	NA	NA	NA
WP_071791986.1\|3730978_3731257_-	hypothetical protein	NA	NA	NA	NA
WP_000131874.1\|3731597_3732077_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	1.6e-62	69.4
WP_039264477.1\|3732063_3732348_-\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	1.0e-08	42.9
WP_001294589.1\|3732347_3732731_-	hypothetical protein	NA	NA	NA	NA
WP_039264478.1\|3732843_3733515_-	antitermination protein	Q7Y3X2	Yersinia_phage	7.8e-15	32.4
WP_000717782.1\|3733514_3733808_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	5.0e-35	71.6
WP_039264479.1\|3733804_3734401_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.4e-71	64.6
WP_001025459.1\|3734478_3734658_-	hypothetical protein	NA	NA	NA	NA
WP_047621045.1\|3734809_3735451_-	hypothetical protein	NA	NA	NA	NA
WP_001559328.1\|3735569_3735848_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|3736415_3736904_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_039264480.1\|3736913_3737519_+	hypothetical protein	NA	NA	NA	NA
WP_048963140.1\|3737628_3738033_-	hypothetical protein	NA	NA	NA	NA
WP_021560857.1\|3738353_3739019_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_021560858.1\|3739223_3739421_-	hypothetical protein	NA	NA	NA	NA
WP_028985353.1\|3740047_3740971_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_047621022.1\|3741148_3741943_-	ORF6N domain-containing protein	A0A088CD42	Shigella_phage	7.0e-47	73.1
WP_000466604.1\|3742215_3742437_-	hypothetical protein	NA	NA	NA	NA
WP_001002789.1\|3742624_3742849_-	hypothetical protein	NA	NA	NA	NA
WP_000192614.1\|3743078_3743480_-	hypothetical protein	NA	NA	NA	NA
WP_001067617.1\|3743518_3744910_-	DNA helicase	Q76H51	Enterobacteria_phage	1.9e-103	46.5
WP_000088681.1\|3744906_3745971_-	hypothetical protein	C8CGZ1	Staphylococcus_phage	7.7e-33	53.9
WP_000943913.1\|3745973_3746198_-	hypothetical protein	H9C163	Pectobacterium_phage	1.1e-18	56.8
WP_047621025.1\|3746237_3746714_-	hypothetical protein	H9C162	Pectobacterium_phage	8.5e-24	48.6
WP_000846364.1\|3746773_3746971_-	hypothetical protein	NA	NA	NA	NA
WP_024184914.1\|3747045_3747453_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.1e-43	68.1
WP_000423305.1\|3747632_3747857_+	hypothetical protein	NA	NA	NA	NA
WP_000388259.1\|3748887_3749208_+	hypothetical protein	NA	NA	NA	NA
WP_047621027.1\|3749238_3751455_+	hypothetical protein	H9C157	Pectobacterium_phage	6.2e-101	35.2
WP_047621030.1\|3751451_3752021_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	3.0e-36	49.7
WP_000916333.1\|3752020_3752203_+	hypothetical protein	NA	NA	NA	NA
WP_001559348.1\|3752412_3752628_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.0e-21	67.6
WP_028985344.1\|3752627_3753656_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	5.6e-97	55.4
3753726:3753802	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3921604 : 3931046

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292767.1\|3921604_3922741_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.6e-161	97.1
WP_089180251.1\|3922737_3924738_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001295429.1\|3924862_3925324_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001295430.1\|3925364_3925835_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|3925881_3926601_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|3926597_3928283_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|3928504_3929236_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001216963.1\|3929295_3929403_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|3929383_3930115_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_032326746.1\|3930119_3931046_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	31.2

DBSCAN-SWA_8

4118387 : 4206721

103

Enterobacteria_phage(46.15%)

portal,protease,holin,transposase,lysis,coat,tail,integrase,tRNA,terminase

attL 4162200:4162218|attR 4213581:4213599

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000156113.1\|4118387_4119290_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	8.2e-68	44.5
WP_001293612.1\|4119486_4120260_-	histidine ABC transporter ATP-binding protein HisP	M1I0T9	Acanthocystis_turfacea_Chlorella_virus	2.1e-08	28.2
WP_000569958.1\|4120267_4120984_-	ABC transporter permease	NA	NA	NA	NA
WP_000965518.1\|4120980_4121667_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_000737621.1\|4121756_4122539_-	histidine ABC transporter substrate-binding protein HisJ	NA	NA	NA	NA
WP_000748261.1\|4122759_4123542_-	lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT	NA	NA	NA	NA
WP_000825700.1\|4123807_4124377_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_000334220.1\|4124471_4125989_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.9e-87	44.0
WP_000262113.1\|4126025_4126514_-	colicin V production protein	NA	NA	NA	NA
WP_000157015.1\|4126772_4127435_-	cell division protein DedD	NA	NA	NA	NA
WP_000584575.1\|4127424_4128693_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_000118404.1\|4128762_4129677_-	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA
WP_000364331.1\|4129832_4130492_-	DedA family protein	NA	NA	NA	NA
WP_001283581.1\|4130574_4131387_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_001289165.1\|4131386_4132400_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000699121.1\|4132465_4133602_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	5.9e-23	29.1
WP_000615821.1\|4133700_4134696_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_000127781.1\|4134692_4135871_-	MFS transporter	NA	NA	NA	NA
WP_000817178.1\|4136163_4137384_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_000683808.1\|4137542_4139549_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_000559764.1\|4139669_4139948_-	YfcL family protein	NA	NA	NA	NA
WP_001089235.1\|4139981_4140530_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_000447361.1\|4140529_4141339_-	TSUP family transporter	NA	NA	NA	NA
WP_001043819.1\|4141338_4142163_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_000918470.1\|4142166_4143252_-	chorismate synthase	A0A291AU41	Pandoravirus	9.1e-90	48.4
WP_001295704.1\|4143286_4144219_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_000730806.1\|4144384_4144936_+	endonuclease SmrB	NA	NA	NA	NA
WP_089180257.1\|4145057_4145915_-	DUF2544 domain-containing protein	NA	NA	NA	NA
WP_000730291.1\|4145916_4146441_-	fimbrial protein	NA	NA	NA	NA
WP_000822649.1\|4146437_4146908_-	fimbrial protein	NA	NA	NA	NA
WP_000678664.1\|4146904_4147411_-	fimbrial protein	NA	NA	NA	NA
WP_001281615.1\|4147427_4148180_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_039022507.1\|4148199_4150842_-	fimbrial usher protein YfcU	NA	NA	NA	NA
WP_000033328.1\|4150923_4151487_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_001195819.1\|4152161_4152647_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_000425062.1\|4152849_4154994_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_000531954.1\|4154993_4156304_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_001296869.1\|4156483_4156768_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_001296861.1\|4157139_4158480_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_000937836.1\|4158846_4159905_+	hypothetical protein	NA	NA	NA	NA
WP_000776768.1\|4160086_4160842_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_000368131.1\|4161135_4162068_+	transporter	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
4162200:4162218	attL	NA	NA	NA	NA
WP_089180258.1\|4162379_4163537_+\|integrase	prophage integrase IntS	A5VW56	Enterobacteria_phage	1.4e-221	99.2
WP_089180259.1\|4163691_4165647_+	acyltransferase	A0A193GZ69	Enterobacter_phage	1.8e-67	31.1
WP_089180260.1\|4165695_4167852_-\|tail	phage tail protein	Q9AYY6	Salmonella_phage	2.0e-59	67.4
WP_089180261.1\|4167987_4168248_+	Arc family DNA-binding protein	A0A088CPT2	Enterobacteria_phage	1.4e-36	97.7
WP_089180262.1\|4168337_4170335_-	DNA transfer protein	Q716G2	Shigella_phage	0.0e+00	96.8
WP_089180263.1\|4170334_4171723_-	DNA transfer protein	A0A220NR03	Salmonella_phage	4.5e-150	64.7
WP_089180264.1\|4171732_4172425_-	DNA transfer protein	G5DA80	Enterobacteria_phage	1.2e-108	98.3
WP_089180265.1\|4172427_4172883_-	DUF2824 family protein	A0A2D1GLX4	Escherichia_phage	2.0e-86	98.7
WP_052906986.1\|4172882_4173731_-	hypothetical protein	Q716G6	Shigella_phage	7.3e-103	98.9
WP_052906985.1\|4173730_4175149_-	hypothetical protein	Q9AYZ4	Salmonella_phage	6.0e-275	99.2
WP_023486190.1\|4175149_4175650_-	DNA stabilization, phage-associated	G8EYJ2	Enterobacteria_phage	4.6e-89	97.6
WP_062870091.1\|4175627_4175882_-	hypothetical protein	A0A2D1GLK1	Escherichia_phage	2.4e-25	94.3
WP_089180266.1\|4175925_4177221_-\|coat	coat protein	A0A2D1GLV2	Escherichia_phage	1.5e-240	98.4
WP_029403254.1\|4177294_4177810_+	HNH endonuclease	A0A291AXK2	Shigella_phage	4.1e-24	39.5
WP_044066501.1\|4177810_4178722_-	scaffolding protein	A0A2D1GLN7	Escherichia_phage	8.3e-161	99.7
WP_089180267.1\|4178735_4180901_-\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	0.0e+00	98.8
WP_032153675.1\|4180901_4182401_-\|terminase	terminase	A0A2D1GLW6	Escherichia_phage	1.1e-306	99.8
WP_000729920.1\|4182378_4182867_-	hypothetical protein	G8EYI7	Enterobacteria_phage	1.4e-90	100.0
WP_089180268.1\|4182946_4183189_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	3.7e-36	98.8
WP_001535929.1\|4183292_4183649_-	hypothetical protein	Q716B1	Shigella_phage	3.6e-43	75.4
WP_032178584.1\|4183836_4184367_-	KilA-N domain-containing protein	B8K1H1	Salmonella_phage	7.6e-90	94.9
WP_089180269.1\|4184572_4184725_-	hypothetical protein	A0A088CQ22	Enterobacteria_phage	8.1e-21	96.0
WP_089180270.1\|4184712_4185150_-\|lysis	lysis protein	K7P710	Enterobacteria_phage	2.5e-70	96.6
WP_089180271.1\|4185146_4185623_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	2.9e-88	99.4
WP_000783734.1\|4185606_4185930_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_001235459.1\|4186363_4186987_-	antitermination protein	K7P6X1	Enterobacteria_phage	3.0e-114	100.0
WP_089180272.1\|4186983_4187649_-	serine/threonine protein phosphatase	K7P721	Enterobacteria_phage	1.6e-129	98.2
WP_000144614.1\|4187626_4187833_-	protein ninH	Q716C0	Shigella_phage	7.3e-33	100.0
WP_032217731.1\|4187829_4188441_-	recombination protein NinG	K7PHM2	Enterobacterial_phage	1.8e-98	98.5
WP_089180273.1\|4188433_4188643_-	protein ninF	G9L691	Escherichia_phage	1.0e-29	95.6
WP_000924601.1\|4188602_4189004_-	hypothetical protein	Q9EYC4	Enterobacteria_phage	1.4e-72	100.0
WP_000113772.1\|4189006_4189183_-	NinE family protein	I6RSQ2	Salmonella_phage	4.6e-28	100.0
WP_023157010.1\|4189319_4189910_-	MT-A70 protein	A0A193GYV6	Enterobacter_phage	2.8e-85	76.0
WP_032217729.1\|4189906_4190347_-	recombination protein NinB	A0A2I6PIF6	Escherichia_phage	1.5e-78	98.6
WP_032217726.1\|4190560_4190887_-	hypothetical protein	I6RSP8	Salmonella_phage	3.6e-58	98.1
WP_157719151.1\|4190962_4192399_-	AAA family ATPase	G5DA90	Enterobacteria_phage	1.5e-273	99.4
WP_089180275.1\|4192388_4193279_-	DNA replication protein	K7PH45	Enterobacterial_phage	4.2e-157	98.3
WP_000424164.1\|4193461_4193740_-	transcriptional regulator	A0A220NRS4	Escherichia_phage	3.6e-43	100.0
WP_000620665.1\|4193848_4194043_-	hypothetical protein	K7PLQ6	Enterobacteria_phage	1.8e-28	100.0
WP_000428318.1\|4194149_4194866_+	helix-turn-helix domain-containing protein	K7PGR7	Enterobacteria_phage	9.2e-123	100.0
WP_089180276.1\|4194885_4195254_+	hypothetical protein	K7P6G1	Enterobacteria_phage	8.5e-56	96.7
WP_089180277.1\|4195621_4195921_+	hypothetical protein	A5VW99	Enterobacteria_phage	4.5e-31	90.9
WP_042098811.1\|4195929_4196253_+	hypothetical protein	K7PKY8	Enterobacterial_phage	7.2e-59	97.2
WP_000333101.1\|4196424_4196625_+	hypothetical protein	A0A088CQ77	Enterobacteria_phage	2.8e-29	100.0
WP_089180278.1\|4196759_4197728_+	cell envelope biogenesis protein TolA	G5DA88	Enterobacteria_phage	8.5e-55	97.2
WP_000638547.1\|4197752_4197884_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	A5VWA4	Enterobacteria_phage	1.4e-16	100.0
WP_001243355.1\|4197868_4198021_+	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	4.7e-21	100.0
WP_000031370.1\|4198277_4198883_+	ERF family protein	Q9MCQ9	Enterobacteria_phage	4.1e-108	100.0
WP_089180279.1\|4198882_4199266_+	hypothetical protein	K7P6P8	Enterobacteria_phage	9.4e-66	98.4
WP_089180280.1\|4199289_4199586_+	DUF2856 family protein	A5VWB0	Enterobacteria_phage	3.3e-50	98.0
WP_001214456.1\|4199596_4199761_+	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	1.1e-23	100.0
WP_089180281.1\|4199781_4200189_+	hypothetical protein	K7PMI0	Enterobacteria_phage	1.1e-59	86.2
WP_089180282.1\|4200897_4201089_+	hypothetical protein	G9L660	Escherichia_phage	4.7e-26	96.8
WP_089180283.1\|4201091_4201478_+	hypothetical protein	A0A2I6PID2	Escherichia_phage	1.2e-41	84.3
WP_089180285.1\|4201752_4201983_+	hypothetical protein	A0A193GYL4	Enterobacter_phage	9.1e-32	97.3
WP_000545733.1\|4202084_4202252_+	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	100.0
WP_001163428.1\|4202310_4202511_+	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
WP_001402373.1\|4202759_4203935_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.4e-144	62.7
WP_000287253.1\|4203914_4204865_-	sce7725 family protein	NA	NA	NA	NA
WP_000019149.1\|4204886_4205768_-	sce7726 family protein	NA	NA	NA	NA
WP_000783295.1\|4206448_4206721_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	3.2e-20	50.0
4213581:4213599	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4428043 : 4472880

Salmonella_phage(52.17%)

holin,tail,integrase,tRNA,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295367.1\|4428043_4428580_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000190655.1\|4428604_4429240_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001013779.1\|4429448_4430297_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_089180291.1\|4430934_4431582_+	hypothetical protein	NA	NA	NA	NA
WP_047087908.1\|4431876_4432422_+	serine acetyltransferase	NA	NA	NA	NA
WP_089180292.1\|4432432_4433005_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.1e-89	83.0
WP_089180293.1\|4433013_4433916_-\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.7e-97	63.6
WP_089180294.1\|4433912_4435010_-\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	6.7e-64	63.4
WP_089180295.1\|4435009_4435690_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	2.6e-106	80.1
WP_089180296.1\|4435686_4436886_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	6.4e-185	83.4
WP_001270637.1\|4436885_4437239_-	hypothetical protein	A0A0M4R339	Salmonella_phage	6.9e-55	89.7
WP_089180297.1\|4437238_4437991_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	4.5e-88	65.9
WP_000466689.1\|4438050_4438290_-	DUF4282 domain-containing protein	A0A077KGV8	Edwardsiella_phage	5.6e-08	47.5
WP_001214054.1\|4438343_4438685_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.4e-33	85.7
WP_089180298.1\|4438688_4439750_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	1.3e-157	82.3
WP_000155113.1\|4439752_4440055_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.1e-48	90.0
WP_089180299.1\|4440054_4440642_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.4e-83	88.0
WP_089180300.1\|4440641_4442630_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	2.5e-271	74.6
WP_032314228.1\|4442807_4443260_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	2.7e-56	73.3
WP_000109249.1\|4443263_4443704_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
WP_069906252.1\|4443714_4444860_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	3.6e-161	73.8
WP_000503647.1\|4444863_4445427_-	hypothetical protein	A0A0M4R331	Salmonella_phage	1.3e-79	75.7
WP_001142480.1\|4445401_4445791_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	2.5e-66	96.1
WP_047655278.1\|4445777_4446332_-	hypothetical protein	A0A0M4S631	Salmonella_phage	3.7e-79	83.7
WP_024192968.1\|4446328_4446736_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.5e-69	95.6
WP_001533349.1\|4446701_4447070_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	2.3e-53	88.5
WP_069906249.1\|4447110_4448052_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	1.8e-155	86.6
WP_024246479.1\|4448063_4448570_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	2.9e-70	79.9
WP_042093526.1\|4448573_4449794_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.6e-204	89.8
WP_089180301.1\|4449808_4450543_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	2.5e-99	88.1
WP_000113489.1\|4450433_4451900_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	6.7e-261	91.8
WP_089180302.1\|4451899_4453522_-	TerL protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	95.2
WP_016233452.1\|4453524_4454097_-\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	6.1e-61	69.6
WP_016233453.1\|4454158_4454683_-	hypothetical protein	K7P6W1	Enterobacteria_phage	1.5e-42	67.7
WP_089180303.1\|4454666_4455143_-	glycoside hydrolase family 104 protein	S5FV07	Shigella_phage	3.3e-84	93.7
WP_000781777.1\|4455146_4455488_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	7.3e-54	92.8
WP_001174014.1\|4455933_4456275_-	hypothetical protein	NA	NA	NA	NA
WP_089180304.1\|4456306_4456729_-	antitermination protein	Q8W638	Enterobacteria_phage	4.0e-41	63.3
WP_089180305.1\|4457009_4459202_-	replication protein	B6SCY1	Bacteriophage	1.9e-174	72.1
WP_000170998.1\|4459205_4459418_-	helix-turn-helix transcriptional regulator	A0A0R6PHL1	Moraxella_phage	7.9e-06	42.9
WP_000049986.1\|4459538_4460162_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	3.3e-36	44.8
WP_089180306.1\|4460942_4461851_+	hypothetical protein	Q3LZP9	Bacteriophage	6.2e-07	54.4
WP_089180307.1\|4461853_4463155_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	8.8e-132	55.5
WP_000769011.1\|4463170_4463719_+	DUF2815 family protein	Q775A5	Bordetella_phage	1.6e-66	65.9
WP_001298623.1\|4463770_4464409_+	hypothetical protein	H6WRY3	Salmonella_phage	3.9e-72	68.8
WP_000490741.1\|4464476_4464746_-	hypothetical protein	NA	NA	NA	NA
WP_089180308.1\|4464802_4466866_+	DNA polymerase	Q775A3	Bordetella_phage	2.5e-274	67.7
WP_000216034.1\|4466871_4467075_+	hypothetical protein	K7PLX1	Enterobacteria_phage	3.2e-12	55.4
WP_000008824.1\|4467080_4467302_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_089180309.1\|4467291_4467774_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	9.7e-68	78.3
WP_000312949.1\|4467773_4468067_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	7.8e-28	69.4
WP_085961393.1\|4468036_4469068_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	1.1e-100	53.0
WP_000212683.1\|4469064_4469385_-	hypothetical protein	NA	NA	NA	NA
WP_089180310.1\|4469419_4470814_+	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	8.1e-216	74.5
WP_001138335.1\|4471007_4472405_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000054752.1\|4472619_4472880_+	4Fe-4S dicluster ferredoxin YfhL	A0A1B1IWY9	uncultured_Mediterranean_phage	4.9e-18	53.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022393

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection