CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018930	Serratia marcescens strain UMH12 chromosome, complete genome	1 crisprs	DinG,csa3,DEDDh,WYL,cas3,casR	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018930_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018930_1

2283533-2283627

Orphan

Consensus_repeat	Method
GCTGCCTGGGCCTGCTTCAGTTGTTCCAGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018930_1

>merge|NZ_CP018930|1|2283533-2283627|CRISPRCasFinder
GCTGCCTGGGCCTGCTTCAGTTGTTCCAGTGCGTCGGCATGTTCCTTATCCTTCGCCGCTGCCGCTGCCTGGGCCTGCTTCAGTTGCTCCAGTGC

>NZ_CP018930|1|1|2283533-2283627|CRISPRCasFinder
GCTGCCTGGGCCTGCTTCAGTTGTTCCAGTGC	GTCGGCATGTTCCTTATCCTTCGCCGCTGCC
GCTGCCTGGGCCTGCTTCAGTTGCTCCAGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018930.1\|WP_089180447.1\|2285395_2286781_-\|DUF2213-domain-containing-protein	unknown	unknown	gnl\|CDD\|370768
NZ_CP018930.1\|WP_089180439.1\|2281101_2281860_-\|Ig-domain-containing-protein	unknown	unknown	gnl\|CDD\|227779
NZ_CP018930.1\|WP_089180441.1\|2282264_2282633_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018930.1\|WP_089180451.1\|2291173_2291824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018930.1\|WP_089180443.1\|2283076_2283454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018930.1\|WP_089180446.1\|2284954_2285392_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018930.1\|WP_089180450.1\|2290698_2291142_-\|DUF2280-domain-containing-protein	unknown	unknown	gnl\|CDD\|370794
NZ_CP018930.1\|WP_089180437.1\|2278078_2278810_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP018930.1\|WP_060436142.1\|2279887_2280334_+\|Arc-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|367702
NZ_CP018930.1\|WP_089180448.1\|2287766_2289194_-\|DUF1073-domain-containing-protein	unknown	unknown	gnl\|CDD\|368870
NZ_CP018930.1\|WP_089180534.1\|2286811_2287699_-\|phage-head-morphogenesis-protein	unknown	unknown	gnl\|CDD\|309383
NZ_CP018930.1\|WP_089180445.1\|2283867_2284944_-\|phage-coat-protein	unknown	unknown	unknown
NZ_CP018930.1\|WP_089180533.1\|2278889_2279543_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214989
NZ_CP018930.1\|WP_110653875.1\|2279589_2279757_-\|Arc-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|164855
NZ_CP018930.1\|WP_089180452.1\|2292181_2292466_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018930.1\|WP_089180442.1\|2282634_2282982_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018930.1\|WP_089180440.1\|2281884_2282268_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018930.1\|WP_049188543.1\|2291855_2292104_-\|DUF2560-family-protein	unknown	unknown	gnl\|CDD\|287770
NZ_CP018930.1\|WP_089180438.1\|2280375_2281050_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018930.1\|WP_089180449.1\|2289204_2290695_-\|terminase	unknown	unknown	gnl\|CDD\|222858

Protein	Function_ID	Function_description	E-value
NZ_CP018930.1\|WP_089180534.1\|2286811_2287699_-\|phage-head-morphogenesis-protein	gnl\|CDD\|309383	pfam04233, Phage_Mu_F, Phage Mu protein F like protein. Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).	1.33108e-08
NZ_CP018930.1\|WP_089180447.1\|2285395_2286781_-\|DUF2213-domain-containing-protein	gnl\|CDD\|370768	pfam09979, DUF2213, Uncharacterized protein conserved in bacteria (DUF2213). Members of this family of bacterial proteins comprise various hypothetical and phage-related proteins. The exact function of these proteins has not, as yet, been determined.	0.000416281
NZ_CP018930.1\|WP_089180439.1\|2281101_2281860_-\|Ig-domain-containing-protein	gnl\|CDD\|227779	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion].	8.1098e-12
NZ_CP018930.1\|WP_110653875.1\|2279589_2279757_-\|Arc-family-DNA-binding-protein	gnl\|CDD\|164855	PHA01513, mnt, Mnt.	0.000195139
NZ_CP018930.1\|WP_089180448.1\|2287766_2289194_-\|DUF1073-domain-containing-protein	gnl\|CDD\|368870	pfam06381, DUF1073, Protein of unknown function (DUF1073). This family consists of several hypothetical bacterial proteins. The function of this family is unknown.	8.37565e-08
NZ_CP018930.1\|WP_089180450.1\|2290698_2291142_-\|DUF2280-domain-containing-protein	gnl\|CDD\|370794	pfam10045, DUF2280, Uncharacterized conserved protein (DUF2280). Members of this family of hypothetical bacterial proteins have no known function.	1.00408e-55
NZ_CP018930.1\|WP_089180449.1\|2289204_2290695_-\|terminase	gnl\|CDD\|222858	PHA02533, 17, large terminase protein; Provisional.	5.3108e-05
NZ_CP018930.1\|WP_049188543.1\|2291855_2292104_-\|DUF2560-family-protein	gnl\|CDD\|287770	pfam10834, DUF2560, Protein of unknown function (DUF2560). This family of proteins has no known function.	3.41515e-10
NZ_CP018930.1\|WP_089180533.1\|2278889_2279543_-\|hypothetical-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	7.17951e-19
NZ_CP018930.1\|WP_060436142.1\|2279887_2280334_+\|Arc-family-DNA-binding-protein	gnl\|CDD\|367702	pfam03869, Arc, Arc-like DNA binding domain. Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognize bases in the major groove.	0.00012567
NZ_CP018930.1\|WP_089180437.1\|2278078_2278810_-\|transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	0.000192413

>NZ_CP018930.1|WP_089180443.1|2283076_2283454_-|hypothetical-protein
MAAQITAAQVKQQLSALGYSIPDFMIDAYLCKLDGIRQCLEASGYDDCDLMLIQVYAVTLMAITAFSQRIKSQSGPSGASGSFDYSGDIKTMRNTLAALDTAGCTAGLPIDVGTSVGFFDVVGGC
>NZ_CP018930.1|WP_089180442.1|2282634_2282982_-|hypothetical-protein
MSAVANWSYTAVATVWKKLSVDEYGKSVFAAPIQIMCDYGGDATARLGDIGLEFVVKNTHWTEYADARQGDYILIGASSEPDPKKVDGADEVRHIIRYADTFDRIADDYAIITGV
>NZ_CP018930.1|WP_089180441.1|2282264_2282633_-|hypothetical-protein
MGVKVKGIREAQATLDRLIGDIKGRRVVRAMQSALLIGGAQAALYTPIDTSTLLNSQYRDITVNGSRITGRVGYSANYAVYVHDPNIPQKFRRATAQKEFLTKGFEDTKAQIDRAIKKEMQL
>NZ_CP018930.1|WP_089180440.1|2281884_2282268_-|hypothetical-protein
MTPSMHRRVRDYFVDAALTAGFTTQMLRWRDTGKGEDKFIVFRPNGGSPVRNDLASEYLVLVDVIGAEGEDEEVDNAVQAIISHIQNNPMPNDCIGHIENVGGIPSPVSTTEGRLVYRLQFACLYGE
>NZ_CP018930.1|WP_089180439.1|2281101_2281860_-|Ig-domain-containing-protein
MQGCSTDNSKLFGRGIVLEVALGCPDTVPAESEWQSLIAGTSKGFDFSPNTVTSDADDTKGYVENLVTNSDFTLSFEGEVRKRDKLDQFGVAKFVKYYNDEIQAGRQPTLWVREEYGPITFIGYMVITALSSDGGTNDIVTLSTEFKVADSDTIQVIDTPVDVAVTGVTISPTSGTVAAGATTTFNVTIAPANATDKTFTLVSSVPARATATANGLVVTVSAPSGATAGTANITVKTNDGAFTAIYAATVTA
>NZ_CP018930.1|WP_089180438.1|2280375_2281050_-|hypothetical-protein
MTPLTEIGEMLISDAGGDYFFRPSFGNMSRIGSPAEIVERFAELHTSEAPRLLSAAVAAYGEIPGWLLAYINSPSFSSSAIFAGMIVMQACCDDDISALVGELRPSKRGRRAFVLRRGSLPASDIIILGQSLITHGIIGKAKVRRLQRHETNSFVSEFSAFEYISAARNHFSMPRAEAEQLTMTEFQLLINAKYPDQKGLTAEEYDAVADEYMKKKARRLAKAA
>NZ_CP018930.1|WP_060436142.1|2279887_2280334_+|Arc-family-DNA-binding-protein
MSKQYSPYPFRMPAEIREQLEEKATEAGRSLQQEMLRRIELTLKLEGALKSRVNSIDGLHDLVFDTIMENKKLESQVRVLTENMTKLQEQNRVLAMSTRISEEQRFDGVRRNLSIIRDALEKAEKSLPPQTEEPFDKRPSYNPNKKPT
>NZ_CP018930.1|WP_110653875.1|2279589_2279757_-|Arc-family-DNA-binding-protein
MKEQKQVNPYPVRMPAEVKDWMSIQAKAAGRSLNSEIVRVLTERMNRSIGRAKSA
>NZ_CP018930.1|WP_089180533.1|2278889_2279543_-|hypothetical-protein
MSAISEKTNVNIVAKSEFNFQGKALVPVSNISGVWFTSADLAKALKYSNSRAVTMLYNKYADEFTSGMSQVLEVSTSGNYRKKVRVFSLRGAHLIAMFARSDVAKEFRRWVLDILDREVEHSPIAKQFTDEELISLSYMWIWMDKGQRVSRAIYPAMKQIGSTYSGYFYDLGHEMRHLIEKTRETLIRETANIDMSSFHARHAAPMLERLNGKGEFH
>NZ_CP018930.1|WP_089180437.1|2278078_2278810_-|transcriptional-regulator
MTKLTLANNGGSVTKMSHHEIAKLTGKKPAHVVRDIENMLEALGMDYPEMDDYDSKEFSIKRKVYNGRVVIDEIWLDHDLTMTLMTGYSIPLRHKVAKRWRQLETGEALPTKSNSGLPEYRRARTLKMTVEAVTNLFDLMPHLAPEAKQVAAASLINPVAGFDAIPLPIMEESHYTAGEVGKILEVSANKIGRIANKHKLKTEEFGKFFLDKSAHSAKQVEAFRYNANGVEALRHLIHGADVA
>NZ_CP018930.1|WP_089180445.1|2283867_2284944_-|phage-coat-protein
MFYFSTKKATETRNLEANMSQFNELMLARNSSAQAVADFIARTRVRGDAANAPALDAVNAVDDIKRLYRAYDQTVLAEFEPNTEFTLLNDLMPLSRSVRLEESVYEYARKGGRGWAHTSMSGQIGAALDAKSYTFDGTMVPIHDSGFKFNWRDPVFNKGSALSSLADAQAGSVDDVRRQYVDYIWEGFRDAAGNFITFDDKTWKGLRHDERVAQVTLTVNFATSTDPKAMRAAAIALRDVLKLQNYQYGQQTWYVSSEIMSNWEQYFDVNALRTVLEELKKLAGISDIKEDAELSGNEIVIIPLAAGVIAPIVGQAFGTVADPRQFYNSDYVWRTWGAAGLMVKQDINGHFSVIHASS
>NZ_CP018930.1|WP_089180446.1|2284954_2285392_-|hypothetical-protein
MAKDGKHVIHAGGIFANPQLHREGAAAADTSPGTIGFFDNTTKKFTASVDGNEAAILYVANYDYLRCKTVDDVIKAGDWVVAFHPTPGVFFNVPAAAGTYTKGQPLSIVNGRVKAAAEGESVSAYVEEDRAYTTVAGELLRVVIK
>NZ_CP018930.1|WP_089180447.1|2285395_2286781_-|DUF2213-domain-containing-protein
MKRNRVNVLTVVNSASNITTETIDGKPHIVVRDITPVVDDIVMNRKLYPAAEIAKAYNTLERKPMPLGHPKIDGKHVSAGDVRAVNNYHVGAWLQDVQHVDGKVNGDMYVDRRYAESSEKGKRLVNRLDEMIAGTNVEPIHISTGLLYSGIAANGESKGKKYNEIATNIAFDHVAVLLDEPGAGTPSEGVGIFVNADGDDQEVEIANLSEGIDCTREGLLNKTKFFFTNASNFSFDDIREAISNKLREGRADDYWPWPESIWPDTFIYRDKTKFFRQKYLIDEDGKAVFVGEPVEVVRKPTEYEIKTNGEKDPMKELIINALQAAGKPTEGKSDAELMDAYNQLAAEKATAKKEGGEEIDPATGKPKKKEQANNSDEAPAWFKPFADDLAAVKSGLIANSDKEKGEMRAAVKTKFGMSDVAVNALDGDPLKELFAQCSTSIGLNGMLRQVNSSQTFSEMPE
>NZ_CP018930.1|WP_089180534.1|2286811_2287699_-|phage-head-morphogenesis-protein
MFRDIENRYLGIKTTLRELFDQRLTGRVLVGNSQRSHVLSGDTLYQVNAGTFVYDMNAQQLAALLEVIQTILDDYLLEGNGQDIWALQYISDEYRRGTLNAYTNLSAQSEVYASQTTLSALLSTPAYQNQVAAAFVSTYSDWKGISDAARADLANIIADAVGRGVNPRETMRVISKRLDVSMSKAKTIAQTEQVGALREAQWNETTWVQDRLGLRTKLLHLSALKPTTRAWHASRHGKLYTVEEVREWYSKDGNRFNCYCSQIPAVVDEKDNVVNIGLAKRLEEERAAWMTQQAA
>NZ_CP018930.1|WP_089180448.1|2287766_2289194_-|DUF1073-domain-containing-protein
MSEQNSEVEFLVNALADAVAIGRQRSLYAGQMNGNTKRTKLWDEFGYPDTISFDLLYRAYRRNSAAHAGVHKTLDNCWSDYPTIIDGPLADKSTVSTEWEKTVTRLLKKHWSKIKDADRRNLVGHYSAIILQLKDSRLWSEPVDTALVARLGEDALVKMIPVWESQIKPGNYDIDTLSPTYGQPVNYIFNEQPVGDDGTYGNVRSVTVHPSRVIILAEGSEDENMLSGIPLNEAGYNDLLDIEKTKGGSAEGFLKNASRQLGIHFDDKTDMKTIAQQAKDAGYKDLGEAMNEKIRKLNQGTDSALVTQSGTSSVLSVAAADPTPSWTVSANSYASTIGCPFNILFGKQTGNLASTEDRKEWAKKGNGRRGGWLSWLLTEVIQRWCDVGVVSQPTKGEITVDWSDLLAPGDSEKLENMSKMADVAYKTQQAFGTPVVEPNEVRAAGELEPIKEPGPPDPTKKPVGKDPLNDDKAEA
>NZ_CP018930.1|WP_089180449.1|2289204_2290695_-|terminase
MADLNKQFSELKKNLKNRFWRLNNLYFITDKSGKKVKFRMTPEQLEYFEGVHTRNIILKARQLGFTTLVCIVQLDAALFESAKCALIAHTLNDAKRLFREKVKYAYDNLPALIRKANPAKNDAVGELVFNNGGSLYVSTSFRGGTLRYLHVSEFGKICAKYPDKAREIVTGAFEAVSTDCFTTIESTAEGRAGYFFDYCQTAEKAQLQGKTLSNLDWKFFFFTWWKNPQYAIDPVESLPERLVDYFNELEAKHGVTLNERQKAWYLAKDKTLGDDMKREYPSIPAEAFQQSVEGAYYAKQFRWLYTNKRIGSLPDNSHLPVHTFWDIGVGDSTAIWFVREVGEEFHIIDYYENSGEGLRHYMKVLKDRGYEYGEHWGPHDIENREFGSDAKSRKELAREGYEIDGQVYSMTFKVVPKVGVDTGIESVREILPKCVFDDEKCAEGISHLEGYRKEWDDKRGCWKDKPLHDHTSHGSDGFRYFAVAKNNHKQVGAVFF
>NZ_CP018930.1|WP_089180450.1|2290698_2291142_-|DUF2280-domain-containing-protein
MAALKPDVKAFIIQSLACFDTPTLVVVSVQKEFGLKITRQQVESHDPTKVSGKSLAKKWVDLFYTTRERFKTEISDIPIANKAYRLRVLDRMATQTETMKNYALAAQIVEQAAKECGDAYTNKQKIETQHTIADEMAELLKEISSEA
>NZ_CP018930.1|WP_089180451.1|2291173_2291824_-|hypothetical-protein
MANTEQNESHERRPYPPLRFIEDHQLTPYIGLVPANEVQEWMQRQIIDDAGSLFNPDHGHLADADLRFMWASSAFEKKGRHVLGQAEEVAMRAGGWQKARMEQQMHEWFGDVPKFIITLAADYCSQCSDAEFCALVEHELYHIAQATDDFGAPKFNKEGQPVLKLRGHDVEEFVGVVRRYGASVEVQELVDAANRPAEVAQLNIARACGNCMLRLA
>NZ_CP018930.1|WP_049188543.1|2291855_2292104_-|DUF2560-family-protein
MAEATEITQAESIRLKLLEIVGYDTAAAKQAIDFVKDSPLKADMFERQFRRFELESKDPIARTLKAIQESTEALILFNEPAA
>NZ_CP018930.1|WP_089180452.1|2292181_2292466_-|hypothetical-protein
MSDAKPQDGSTVKGYRTLTADDIAQMNDLKDISRNFCEQLDIERTHLSLETVEAGSPEESNRSEAMRCLAIARTKMQEACMWACRAVARPDADC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1448191 : 1468487

Moraxella_phage(100.0%)

coat,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049209391.1\|1448191_1449610_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_004931526.1\|1449756_1449966_-	hypothetical protein	NA	NA	NA	NA
WP_004931522.1\|1450747_1451140_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_025302577.1\|1451144_1451744_+	hypothetical protein	NA	NA	NA	NA
WP_025302578.1\|1451799_1452039_-	YebV family protein	NA	NA	NA	NA
WP_025302579.1\|1452174_1453107_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_025302581.1\|1455614_1456379_-	molecular chaperone	NA	NA	NA	NA
WP_016928007.1\|1456403_1456958_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_025302583.1\|1456957_1457461_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_016928005.1\|1457463_1458003_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_060447256.1\|1458279_1459716_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_025302585.1\|1459818_1462449_-	PqiB family protein	NA	NA	NA	NA
WP_025302586.1\|1462417_1463665_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_025302587.1\|1463920_1464418_+	GAF domain-containing protein	NA	NA	NA	NA
WP_004931497.1\|1464514_1465225_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_016927999.1\|1465244_1467293_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-85	34.0
WP_016927998.1\|1467602_1468487_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_2

2031438 : 2093313

Escherichia_phage(26.67%)

coat,tail,holin,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043143623.1\|2031438_2032251_+\|protease	serine protease	NA	NA	NA	NA
WP_025302977.1\|2032349_2036237_-	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	7.6e-54	27.0
WP_015377994.1\|2036506_2037112_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_025302978.1\|2037230_2037554_-	YdbL family protein	NA	NA	NA	NA
WP_025302979.1\|2037562_2037760_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_089180380.1\|2037756_2040369_-	YdbH family protein	NA	NA	NA	NA
WP_127145960.1\|2040693_2041521_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_025302982.1\|2041657_2041948_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_025302983.1\|2042090_2043083_+	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	4.2e-65	43.6
WP_049205463.1\|2043133_2043562_+	heat shock protein HslJ	NA	NA	NA	NA
WP_015377999.1\|2043583_2043838_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_025302985.1\|2044337_2044670_-	multidrug efflux SMR transporter SsmE	NA	NA	NA	NA
WP_025302986.1\|2044908_2048442_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_060447733.1\|2048529_2048844_-	hypothetical protein	NA	NA	NA	NA
WP_060432114.1\|2049364_2049763_-	hypothetical protein	Q1MVE7	Enterobacteria_phage	1.6e-23	51.2
WP_089180381.1\|2049916_2051041_-	hypothetical protein	A0A2H4PRH0	Proteus_phage	8.1e-57	49.6
WP_158523421.1\|2051043_2051220_-	hypothetical protein	NA	NA	NA	NA
WP_089180382.1\|2051220_2052174_-	hypothetical protein	K7P7B1	Enterobacteria_phage	4.6e-69	45.6
WP_089180383.1\|2052222_2053212_-	hypothetical protein	NA	NA	NA	NA
WP_089180525.1\|2053213_2056417_-	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	67.1
WP_089180384.1\|2056471_2057098_-\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	2.6e-49	53.3
WP_145957001.1\|2057140_2057500_-	hypothetical protein	NA	NA	NA	NA
WP_089180385.1\|2057508_2058219_-	hypothetical protein	NA	NA	NA	NA
WP_089180386.1\|2058280_2058994_-	C40 family peptidase	F1C573	Cronobacter_phage	7.8e-98	71.1
WP_089180387.1\|2058996_2059752_-\|tail	phage minor tail protein L	F1C574	Cronobacter_phage	4.1e-97	68.1
WP_089180388.1\|2059760_2060102_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	9.7e-30	55.7
WP_089180389.1\|2060143_2063119_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	1.5e-211	46.9
WP_089180390.1\|2063158_2063413_-	hypothetical protein	I6PD79	Cronobacter_phage	8.8e-20	68.8
WP_089180391.1\|2063460_2063814_-	hypothetical protein	G8C7Q5	Escherichia_phage	2.5e-28	55.3
WP_089180392.1\|2063859_2064516_-\|tail	phage tail protein	I6PBN6	Cronobacter_phage	1.3e-70	66.2
WP_158523422.1\|2064559_2064973_-	hypothetical protein	I6PDJ8	Cronobacter_phage	2.3e-25	43.5
WP_089180394.1\|2064969_2065554_-	hypothetical protein	G8C7Q1	Escherichia_phage	3.3e-54	57.8
WP_089180395.1\|2065555_2065906_-	hypothetical protein	G8C7Q0	Escherichia_phage	2.1e-32	65.8
WP_089180396.1\|2065908_2066391_-	hypothetical protein	G8C7P9	Escherichia_phage	5.9e-49	58.8
WP_048795441.1\|2066839_2067979_-\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	1.4e-157	74.2
WP_089180397.1\|2068074_2068827_-	hypothetical protein	G8C7P6	Escherichia_phage	5.2e-100	75.6
WP_089180398.1\|2068931_2070044_-	hypothetical protein	I6PD76	Cronobacter_phage	4.3e-119	57.5
WP_089180399.1\|2070049_2071438_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	1.7e-197	74.4
WP_089180400.1\|2071443_2072748_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	4.4e-147	59.5
WP_089180526.1\|2072728_2073745_-\|terminase	terminase small subunit	Q6J1S5	Burkholderia_virus	5.3e-31	37.2
WP_089180401.1\|2073917_2074211_-	hypothetical protein	NA	NA	NA	NA
WP_089180402.1\|2074308_2074533_-	hypothetical protein	NA	NA	NA	NA
WP_089180403.1\|2074630_2074912_-	hypothetical protein	G8C7W3	Escherichia_phage	3.6e-38	83.9
WP_089180404.1\|2075035_2075233_-	hypothetical protein	K7PHC3	Enterobacterial_phage	6.4e-18	72.1
WP_089180406.1\|2075385_2075772_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_089180407.1\|2075768_2076392_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	4.2e-71	62.6
WP_049273114.1\|2076395_2076731_-\|holin	phage holin, lambda family	Q2A0C6	Sodalis_phage	1.7e-18	45.2
WP_047730604.1\|2076797_2077520_-	hypothetical protein	A0A0C4UQZ7	Shigella_phage	3.3e-88	68.1
WP_089180527.1\|2077689_2078379_-	antitermination protein	NA	NA	NA	NA
WP_049194162.1\|2078378_2078660_-	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	9.1e-42	86.8
WP_089180408.1\|2078664_2079261_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	3.7e-93	82.7
WP_089180409.1\|2079303_2079576_-	hypothetical protein	H6WRY6	Salmonella_phage	1.4e-18	63.2
WP_089180410.1\|2079585_2079819_-	DinI-like family protein	H6WRY5	Salmonella_phage	3.1e-19	55.8
WP_089180528.1\|2080184_2080751_-	hypothetical protein	A0A2I7R795	Vibrio_phage	5.7e-11	42.3
WP_089180411.1\|2080750_2081146_-	hypothetical protein	NA	NA	NA	NA
WP_089180412.1\|2081183_2081720_-	replication protein	A0A0U2JGJ0	Escherichia_phage	3.5e-42	53.4
WP_158523423.1\|2081628_2082741_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.2e-25	43.2
WP_089180413.1\|2082804_2082999_+	hypothetical protein	NA	NA	NA	NA
WP_089180529.1\|2083025_2083919_-	site-specific DNA-methyltransferase	M4R1Z8	Salicola_phage	3.1e-96	57.7
WP_089180414.1\|2083981_2084224_-	hypothetical protein	NA	NA	NA	NA
WP_089180415.1\|2084242_2084809_-	hypothetical protein	K7P7P2	Enterobacteria_phage	2.6e-19	42.0
WP_089180530.1\|2084811_2085039_-	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	3.8e-14	52.2
WP_089180416.1\|2085147_2085531_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	6.6e-19	64.3
WP_117188020.1\|2085966_2086101_+	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_158523424.1\|2086177_2086336_+	hypothetical protein	NA	NA	NA	NA
WP_158523425.1\|2086319_2086484_+	hypothetical protein	NA	NA	NA	NA
WP_048796132.1\|2086620_2086854_+	hypothetical protein	NA	NA	NA	NA
WP_072270454.1\|2086850_2087081_+	hypothetical protein	Q24LE4	Clostridium_phage	1.4e-08	43.9
WP_145957002.1\|2087241_2090454_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	8.0e-142	41.1
WP_089180417.1\|2090465_2091584_+	hypothetical protein	A0A2I7RQF1	Vibrio_phage	3.2e-61	46.6
WP_085337747.1\|2091577_2091763_+	hypothetical protein	NA	NA	NA	NA
WP_089180418.1\|2091826_2092039_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	3.6e-19	59.2
WP_089180419.1\|2092038_2093313_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	4.6e-149	59.7

DBSCAN-SWA_3

2266482 : 2308686

Cronobacter_phage(32.61%)

coat,tail,holin,terminase,integrase,head

attL 2265994:2266017|attR 2308720:2308743

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2265994:2266017	attL	NA	NA	NA	NA
WP_089180428.1\|2266482_2268381_-	SGNH/GDSL hydrolase family protein	W0TW81	Staphylococcus_phage	1.3e-38	42.0
WP_089180429.1\|2268381_2270874_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	2.0e-257	55.4
WP_089180532.1\|2270821_2271226_-	hypothetical protein	F1C5F2	Cronobacter_phage	3.3e-45	64.7
WP_089180430.1\|2271245_2271716_-	DUF1833 domain-containing protein	R9TPR6	Aeromonas_phage	8.3e-48	58.8
WP_089180431.1\|2271716_2272184_-	hypothetical protein	A0A173GC35	Salmonella_phage	1.2e-51	63.5
WP_089180432.1\|2272293_2272464_+	ATP-NAD kinase	NA	NA	NA	NA
WP_158523426.1\|2272466_2272634_-	hypothetical protein	NA	NA	NA	NA
WP_089180433.1\|2272655_2276045_-	tape measure protein	Q5G8W8	Enterobacteria_phage	4.0e-184	49.0
WP_089180434.1\|2276107_2276512_-	hypothetical protein	NA	NA	NA	NA
WP_089180435.1\|2276606_2276885_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_089180436.1\|2277038_2277929_+	phage antirepressor Ant	Q0H8C7	Salmonella_phage	9.1e-88	59.1
WP_089180437.1\|2278078_2278810_-	transcriptional regulator	A0A0P0ZD96	Stx2-converting_phage	6.2e-42	65.6
WP_089180533.1\|2278889_2279543_-	hypothetical protein	H6WRU8	Salmonella_phage	7.2e-58	52.1
WP_110653875.1\|2279589_2279757_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_060436142.1\|2279887_2280334_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_089180438.1\|2280375_2281050_-	hypothetical protein	G0ZNE7	Cronobacter_phage	6.7e-67	56.7
WP_089180439.1\|2281101_2281860_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	4.1e-81	76.4
WP_089180440.1\|2281884_2282268_-	hypothetical protein	G0ZNE4	Cronobacter_phage	1.2e-44	64.6
WP_089180441.1\|2282264_2282633_-	hypothetical protein	F1C5E3	Cronobacter_phage	7.9e-46	74.6
WP_089180442.1\|2282634_2282982_-	hypothetical protein	G0ZNE2	Cronobacter_phage	1.7e-29	59.5
WP_089180443.1\|2283076_2283454_-	hypothetical protein	F1C5E2	Cronobacter_phage	7.9e-49	78.5
WP_089180444.1\|2283456_2283858_-	hypothetical protein	NA	NA	NA	NA
WP_089180445.1\|2283867_2284944_-\|coat	phage coat protein	F1C5E1	Cronobacter_phage	1.0e-154	75.1
WP_089180446.1\|2284954_2285392_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.3e-42	64.1
WP_089180447.1\|2285395_2286781_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.2e-155	60.4
WP_089180534.1\|2286811_2287699_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.0e-106	65.3
WP_089180448.1\|2287766_2289194_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	4.0e-170	64.7
WP_089180449.1\|2289204_2290695_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	1.3e-240	80.9
WP_089180450.1\|2290698_2291142_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.3e-47	71.6
WP_089180451.1\|2291173_2291824_-	hypothetical protein	I6S676	Salmonella_phage	2.1e-89	74.8
WP_049188543.1\|2291855_2292104_-	DUF2560 family protein	NA	NA	NA	NA
WP_089180452.1\|2292181_2292466_-	hypothetical protein	G8C7W3	Escherichia_phage	2.4e-26	66.0
WP_089180453.1\|2292462_2292990_-	hypothetical protein	K7P6W1	Enterobacteria_phage	1.8e-30	51.9
WP_089180454.1\|2292986_2293598_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.2e-67	60.3
WP_049202679.1\|2293594_2293903_-\|holin	phage holin family protein	G8C7V9	Escherichia_phage	4.8e-12	40.9
WP_049202652.1\|2293916_2294294_-	membrane protein	F1C592	Cronobacter_phage	7.9e-25	50.8
WP_089180455.1\|2294577_2295408_-	antitermination protein	K7P7B9	Enterobacteria_phage	4.9e-75	53.3
WP_089180456.1\|2295404_2295761_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	1.1e-44	70.3
WP_089180457.1\|2295757_2296732_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.7e-61	37.9
WP_089180458.1\|2296728_2297751_-	hypothetical protein	H9C164	Pectobacterium_phage	7.1e-44	78.4
WP_089180459.1\|2297747_2297930_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_046688406.1\|2298270_2298564_-	hypothetical protein	I6PCV6	Cronobacter_phage	2.1e-09	43.8
WP_089180535.1\|2298581_2298830_-	helix-turn-helix transcriptional regulator	A0A2H4JEY0	uncultured_Caudovirales_phage	7.3e-11	48.7
WP_121976243.1\|2299099_2299669_+	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	6.8e-44	55.0
WP_064505240.1\|2300141_2300300_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	1.3e-05	52.3
WP_089180460.1\|2300317_2300566_+	hypothetical protein	NA	NA	NA	NA
WP_089180461.1\|2300987_2301200_+	hypothetical protein	NA	NA	NA	NA
WP_154582428.1\|2301193_2301337_+	hypothetical protein	NA	NA	NA	NA
WP_089180462.1\|2301340_2302126_+	hypothetical protein	C7BGF1	Burkholderia_phage	4.2e-60	51.0
WP_089180463.1\|2302559_2302814_+	hypothetical protein	NA	NA	NA	NA
WP_089180464.1\|2302810_2303488_+	hypothetical protein	Q5QF30	Pseudomonas_virus	5.6e-53	48.9
WP_089180465.1\|2303484_2304240_+	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	7.9e-125	79.3
WP_089180466.1\|2304242_2304527_+	hypothetical protein	NA	NA	NA	NA
WP_047025459.1\|2304523_2304709_+	hypothetical protein	NA	NA	NA	NA
WP_089180467.1\|2304698_2305208_+	hypothetical protein	NA	NA	NA	NA
WP_089180468.1\|2305209_2305539_+	hypothetical protein	G8C7S4	Escherichia_phage	2.1e-45	79.0
WP_089180469.1\|2305535_2305838_+	hypothetical protein	A0A193GYX5	Enterobacter_phage	6.2e-12	68.2
WP_004940162.1\|2305895_2306156_+	hypothetical protein	A0A1V0E5L9	Salmonella_phage	1.0e-18	57.9
WP_089180470.1\|2306165_2306420_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	3.2e-22	61.9
WP_089180471.1\|2306490_2306712_+	hypothetical protein	NA	NA	NA	NA
WP_089180472.1\|2306704_2306914_+	hypothetical protein	E5AGD4	Erwinia_phage	2.1e-11	51.5
WP_042784857.1\|2306910_2307102_+	hypothetical protein	NA	NA	NA	NA
WP_089180473.1\|2307120_2307369_+	excisionase family protein	S4TND0	Salmonella_phage	2.3e-17	58.3
WP_089180474.1\|2307402_2308686_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	6.0e-141	57.6
2308720:2308743	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3203901 : 3210995

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049209511.1\|3203901_3204255_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.6e-19	46.2
WP_060434427.1\|3204455_3204686_+	hypothetical protein	J9Q735	Salmonella_phage	4.2e-13	49.3
WP_049296088.1\|3204699_3205245_+	DNA-binding protein	J9Q7G7	Salmonella_phage	5.9e-45	56.6
WP_025159568.1\|3205252_3205954_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_016926729.1\|3206226_3206742_+	hypothetical protein	NA	NA	NA	NA
WP_016926728.1\|3206775_3207024_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_016926727.1\|3207071_3208361_-	uracil permease	Q9KX94	Enterobacteria_phage	3.5e-64	38.2
WP_004941642.1\|3208437_3209064_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_025303843.1\|3209319_3210357_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	3.8e-69	41.9
WP_021504400.1\|3210356_3210995_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.2e-26	37.0

DBSCAN-SWA_5

4171564 : 4180491

environmental_Halophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060448456.1\|4171564_4173643_+	hypothetical protein	H9YQA8	environmental_Halophage	1.3e-52	71.9
WP_025304519.1\|4173683_4174901_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.5e-27	26.3
WP_025304520.1\|4175032_4175608_-	aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.0e-68	62.6
WP_060448457.1\|4175680_4177204_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	1.9e-77	42.6
WP_025304522.1\|4177355_4178081_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_043138870.1\|4178080_4179766_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.2e-224	72.8
WP_025304524.1\|4179921_4180491_-	peptidylprolyl isomerase A	A0A1V0S9I2	Catovirus	1.7e-07	31.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage