CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018926	Serratia marcescens strain UMH6 chromosome, complete genome	0 crisprs	DinG,csa3,DEDDh,cas3,WYL	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1304712 : 1339125

Enterobacteria_phage(38.71%)

integrase,head,capsid,terminase,plate,portal,tail

attL 1304268:1304287|attR 1339955:1339974

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1304268:1304287	attL	NA	NA	NA	NA
WP_089191512.1\|1304712_1305867_-	phage late control D family protein	B9A7A9	Serratia_phage	8.5e-211	97.1
WP_089191513.1\|1306017_1307199_+\|tail	phage tail protein	A0A0A7NV69	Enterobacteria_phage	6.5e-158	70.1
WP_060436783.1\|1307199_1307715_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.8e-56	64.7
WP_089191514.1\|1307773_1308073_+\|tail	phage tail protein	B9A7B2	Serratia_phage	7.4e-42	92.9
WP_072055827.1\|1308081_1308246_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	3.7e-11	62.2
WP_089191515.1\|1308235_1311205_+\|tail	phage tail tape measure protein	B9A7B3	Serratia_phage	4.4e-296	99.5
WP_048233367.1\|1311219_1311711_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	4.8e-54	61.7
WP_089191516.1\|1311818_1312901_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	2.2e-35	51.8
WP_145957760.1\|1312935_1313682_-	hypothetical protein	NA	NA	NA	NA
WP_089191518.1\|1313686_1315837_-	hypothetical protein	B5TAB2	Burkholderia_phage	3.6e-106	39.7
WP_089191519.1\|1315838_1316441_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	2.1e-43	51.5
WP_089191520.1\|1316433_1317333_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	1.3e-94	62.9
WP_048233373.1\|1317319_1317688_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	1.7e-27	53.9
WP_089191521.1\|1317684_1318269_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	3.7e-61	60.0
WP_089191522.1\|1318268_1318907_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	9.6e-47	49.3
WP_089191523.1\|1318903_1319365_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.7e-35	51.3
WP_089191524.1\|1319506_1319890_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_089191525.1\|1319886_1320441_-	lysozyme	Q1I0Z1	Pasteurella_virus	3.2e-30	40.1
WP_049200211.1\|1320437_1320719_-	hypothetical protein	B9A7B8	Serratia_phage	8.2e-35	100.0
WP_033640714.1\|1320709_1320910_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	6.1e-16	63.1
WP_089191526.1\|1320909_1321407_-\|head	head completion/stabilization protein	B9A7B7	Serratia_phage	2.8e-86	98.2
WP_089191527.1\|1321510_1322380_-\|terminase	terminase	B9A7B6	Serratia_phage	2.2e-118	97.8
WP_089191528.1\|1322424_1323471_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	1.4e-108	55.8
WP_089191529.1\|1323510_1324344_-\|capsid	phage capsid protein	B9A7B4	Serratia_phage	8.8e-125	85.2
WP_089191530.1\|1324503_1326225_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.3e-223	64.6
WP_033640705.1\|1326226_1327282_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	3.1e-143	68.0
WP_072271151.1\|1327703_1329929_-	S8 family peptidase	NA	NA	NA	NA
WP_048233398.1\|1329947_1331075_-	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	3.3e-18	29.3
WP_145957761.1\|1331210_1333583_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	6.0e-187	51.1
WP_089191532.1\|1333579_1334446_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L011	Salmonella_phage	3.1e-64	47.4
WP_072062304.1\|1334442_1334667_-	TraR/DksA family transcriptional regulator	F1BUS2	Erwinia_phage	6.4e-14	55.6
WP_089191533.1\|1334815_1335016_-	hypothetical protein	NA	NA	NA	NA
WP_089191534.1\|1335334_1335814_+	hypothetical protein	NA	NA	NA	NA
WP_089191535.1\|1335806_1336148_-	hypothetical protein	NA	NA	NA	NA
WP_048233408.1\|1336256_1336520_-	hypothetical protein	NA	NA	NA	NA
WP_048233410.1\|1336516_1336729_-	DUF4761 family protein	A0A0M5M1I3	Salmonella_phage	1.7e-16	66.7
WP_048233866.1\|1336740_1337010_-	hypothetical protein	NA	NA	NA	NA
WP_089191536.1\|1337097_1337397_+	helix-turn-helix transcriptional regulator	Q1JS37	Enterobacteria_phage	2.9e-22	52.6
WP_089191537.1\|1337514_1338132_+	hypothetical protein	NA	NA	NA	NA
WP_089191538.1\|1338141_1339125_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LA05	Escherichia_phage	1.4e-89	50.3
1339955:1339974	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1509774 : 1536813

Moraxella_phage(50.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046686934.1\|1509774_1511193_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_033642834.1\|1511339_1511549_-	hypothetical protein	NA	NA	NA	NA
WP_033638276.1\|1512328_1512721_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_089191602.1\|1512725_1513325_+	hypothetical protein	NA	NA	NA	NA
WP_033652110.1\|1513380_1513620_-	YebV family protein	NA	NA	NA	NA
WP_089192594.1\|1513754_1514687_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_089192595.1\|1514706_1517049_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_089191603.1\|1517200_1517968_-	molecular chaperone	NA	NA	NA	NA
WP_033642838.1\|1517988_1518531_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_089191604.1\|1518524_1519028_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_046686938.1\|1519030_1519567_-	fimbrial major subunit CsuA/B family protein	NA	NA	NA	NA
WP_033642841.1\|1519840_1520377_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_089191605.1\|1520642_1522079_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_033644262.1\|1522181_1524812_-	PqiB family protein	NA	NA	NA	NA
WP_047026336.1\|1524780_1526028_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_033642843.1\|1526283_1526781_+	GAF domain-containing protein	NA	NA	NA	NA
WP_004931497.1\|1526877_1527588_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_033642845.1\|1527607_1529656_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.5e-85	33.9
WP_033642846.1\|1529722_1530568_-	DMT family transporter	NA	NA	NA	NA
WP_089191606.1\|1530564_1531872_-	opine metallophore biosynthesis dehydrogenase	NA	NA	NA	NA
WP_072627726.1\|1531864_1532662_-	nicotianamine synthase	NA	NA	NA	NA
WP_047026224.1\|1532649_1533435_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-10	28.4
WP_033652483.1\|1533431_1534472_-	iron ABC transporter permease	NA	NA	NA	NA
WP_042784331.1\|1534474_1535566_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033652481.1\|1535934_1536813_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_3

1550554 : 1623148

Salmonella_phage(30.77%)

tRNA,integrase,holin,head,transposase,terminase,protease,tail

attL 1547222:1547240|attR 1596879:1596897

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1547222:1547240	attL	NA	NA	NA	NA
WP_089191615.1\|1550554_1551835_-\|protease	protease	NA	NA	NA	NA
WP_025302601.1\|1552020_1552581_+	membrane protein	NA	NA	NA	NA
WP_033642864.1\|1552616_1553486_-	fructosamine kinase family protein	NA	NA	NA	NA
WP_089191616.1\|1553726_1554581_-	metal ABC transporter permease	NA	NA	NA	NA
WP_016927980.1\|1554580_1555441_-	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA
WP_089191617.1\|1555440_1556331_-	manganese/iron ABC transporter ATP-binding protein	A0A1V0SKJ1	Klosneuvirus	2.5e-08	28.1
WP_033642867.1\|1556327_1557272_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033642868.1\|1557403_1557703_-	type V toxin-antitoxin system endoribonuclease antitoxin GhoS	NA	NA	NA	NA
WP_004931439.1\|1557812_1558478_+	transglycosylase SLT domain-containing protein	I6ZXX9	Escherichia_phage	1.0e-06	46.3
WP_033652465.1\|1558782_1559508_+	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA
WP_004931432.1\|1559510_1561292_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_033642870.1\|1561304_1562642_+	cytochrome c	NA	NA	NA	NA
WP_089191618.1\|1562897_1564181_+	HAAAP family serine/threonine permease	NA	NA	NA	NA
WP_047026214.1\|1564331_1565465_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033652461.1\|1565501_1566191_-	MarC family NAAT transporter	NA	NA	NA	NA
WP_089191619.1\|1566298_1566526_-	hypothetical protein	NA	NA	NA	NA
WP_033642876.1\|1566749_1567799_+	YrzE family protein	NA	NA	NA	NA
WP_047026212.1\|1568038_1568662_+	hypothetical protein	NA	NA	NA	NA
WP_089191620.1\|1569011_1570214_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	7.1e-136	58.8
WP_089191621.1\|1570177_1570426_-	hypothetical protein	A0A1P8DTG1	Proteus_phage	1.6e-13	53.0
WP_089191623.1\|1570608_1571256_-	DNA methyltransferase	G8C7S6	Escherichia_phage	7.8e-89	74.9
WP_089191624.1\|1571252_1571441_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_060451515.1\|1571666_1571885_-	hypothetical protein	NA	NA	NA	NA
WP_154641072.1\|1571927_1572071_+	hypothetical protein	NA	NA	NA	NA
WP_089191627.1\|1572608_1572824_-	molecular chaperone DnaJ	R9TNC2	Aeromonas_phage	4.2e-23	78.6
WP_060706286.1\|1572837_1573092_-	hypothetical protein	A0A2H4EW60	Aeromonas_phage	3.6e-13	45.7
WP_089191628.1\|1573093_1573735_-	hypothetical protein	R9W086	Serratia_phage	9.1e-21	38.0
WP_060435816.1\|1573734_1573974_-	hypothetical protein	NA	NA	NA	NA
WP_089191629.1\|1573970_1574282_-	hypothetical protein	NA	NA	NA	NA
WP_089191630.1\|1574244_1574889_-	morphogenetic protein	H2BDG4	Pseudomonas_virus	1.8e-45	46.8
WP_089191631.1\|1574885_1575419_-	hypothetical protein	J9Q748	Salmonella_phage	6.7e-62	64.6
WP_089191632.1\|1575957_1576743_-	hypothetical protein	C7BGF1	Burkholderia_phage	7.9e-59	51.0
WP_089191633.1\|1576941_1577703_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.0e-34	34.7
WP_089191634.1\|1577699_1579199_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_089191635.1\|1579298_1579511_-	hypothetical protein	NA	NA	NA	NA
WP_060425670.1\|1580025_1580277_+	hypothetical protein	NA	NA	NA	NA
WP_071883875.1\|1580896_1581490_-	helix-turn-helix domain-containing protein	Q76H56	Enterobacteria_phage	1.2e-14	59.2
WP_060706484.1\|1581600_1581813_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	5.4e-23	73.9
WP_060706485.1\|1581838_1582129_+	hypothetical protein	K7PHN8	Enterobacterial_phage	2.8e-06	39.4
WP_060706486.1\|1582242_1582566_-	hypothetical protein	NA	NA	NA	NA
WP_089192596.1\|1582760_1583405_+	phage regulatory protein/antirepressor Ant	A0A2I7RHG4	Vibrio_phage	4.3e-47	48.8
WP_065426409.1\|1583407_1583584_+	DUF4222 domain-containing protein	A0A1W6JP38	Morganella_phage	1.4e-08	51.0
WP_158524424.1\|1584662_1585637_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.4e-68	41.2
WP_089191638.1\|1585633_1585828_+	hypothetical protein	NA	NA	NA	NA
WP_089191639.1\|1585824_1586253_+	antitermination protein Q	U5P0A5	Shigella_phage	1.4e-46	73.3
WP_158524425.1\|1586372_1586609_-	hypothetical protein	NA	NA	NA	NA
WP_033637976.1\|1586915_1587233_+\|holin	holin	F1C5D1	Cronobacter_phage	8.7e-41	82.8
WP_089191640.1\|1587219_1587660_+	lysozyme	A0A0M5M782	Salmonella_phage	1.3e-47	68.3
WP_089191641.1\|1587656_1588037_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_158524426.1\|1588351_1589233_+\|protease	serine protease	S5FV10	Shigella_phage	6.8e-59	56.6
WP_089191644.1\|1589815_1590238_+\|terminase	terminase small subunit	A0A1V0E5Q4	Salmonella_phage	1.3e-44	69.8
WP_089191645.1\|1590230_1591478_+\|terminase	terminase	I6RSK1	Salmonella_phage	9.8e-213	95.6
WP_089191646.1\|1591499_1592828_+	DUF1073 domain-containing protein	I6R9A1	Salmonella_phage	1.2e-200	76.6
WP_089191647.1\|1592811_1593738_+\|head	phage head morphogenesis protein	H2BD79	Pseudomonas_phage	4.9e-108	62.5
WP_089191648.1\|1593741_1595007_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	1.2e-189	77.7
WP_049188535.1\|1595019_1595466_+	hypothetical protein	A0A1V0E5Q8	Salmonella_phage	1.7e-63	86.5
WP_089191649.1\|1595483_1596560_+	hypothetical protein	A0A1V0E5P6	Salmonella_phage	2.0e-185	88.0
WP_089191650.1\|1596569_1596863_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	8.3e-38	78.4
WP_089191651.1\|1596929_1597328_+	hypothetical protein	G0ZNE1	Cronobacter_phage	7.2e-61	84.0
1596879:1596897	attR	NA	NA	NA	NA
WP_089191653.1\|1597499_1597847_+	hypothetical protein	G0ZNE2	Cronobacter_phage	4.3e-33	59.1
WP_089191654.1\|1597849_1598248_+	HK97 gp10 family phage protein	A0A1W6DXX3	Salmonella_phage	8.1e-36	58.3
WP_089191655.1\|1598244_1598628_+	hypothetical protein	G0ZNE4	Cronobacter_phage	7.5e-31	50.4
WP_041033806.1\|1598688_1599438_+	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	2.3e-63	55.2
WP_060429459.1\|1599645_1600155_+	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	1.5e-63	69.0
WP_089191656.1\|1600193_1600874_+	hypothetical protein	G0ZNE7	Cronobacter_phage	5.9e-63	54.5
WP_089191657.1\|1601075_1601279_+	hypothetical protein	NA	NA	NA	NA
WP_145957765.1\|1601282_1602119_+	hypothetical protein	A0A0M4R2T6	Salmonella_phage	2.0e-52	43.8
WP_158524427.1\|1602204_1602408_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_060660822.1\|1602515_1602716_+	lipoprotein	NA	NA	NA	NA
WP_089191660.1\|1602827_1603214_+	hypothetical protein	A0A0M4QWT0	Salmonella_phage	1.4e-32	56.7
WP_089191661.1\|1603583_1606049_+	tape measure protein	A0A1B1W284	Salmonella_phage	2.2e-75	40.7
WP_089191662.1\|1606063_1606294_+	hypothetical protein	NA	NA	NA	NA
WP_089191663.1\|1606336_1606804_+	hypothetical protein	A0A173GC35	Salmonella_phage	9.4e-52	63.5
WP_089191664.1\|1606804_1607275_+	DUF1833 family protein	R9TPR6	Aeromonas_phage	4.6e-46	57.5
WP_089192597.1\|1607294_1607699_+	C40 family peptidase	F1C5F2	Cronobacter_phage	8.7e-46	64.7
WP_089191665.1\|1607646_1610139_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	6.2e-259	55.3
WP_089191666.1\|1610139_1612446_+	hypothetical protein	A0A1B1W279	Salmonella_phage	8.1e-11	60.9
WP_060451534.1\|1612446_1613352_+	hypothetical protein	NA	NA	NA	NA
WP_033637997.1\|1613497_1613920_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	3.0e-33	55.0
WP_089191667.1\|1613919_1615188_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.4e-176	71.3
WP_089191668.1\|1615184_1615892_-	hypothetical protein	A0A2H4J5W2	uncultured_Caudovirales_phage	3.3e-72	57.3
WP_025159696.1\|1616159_1618088_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.5e-132	37.7
WP_048233542.1\|1618091_1618643_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_004931418.1\|1618741_1618939_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_004931417.1\|1618982_1619339_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_147880682.1\|1619405_1619501_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_004931416.1\|1619762_1620746_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.2e-34	38.9
WP_033642878.1\|1620760_1623148_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	3.1e-05	24.0

DBSCAN-SWA_4

2072829 : 2113756

Edwardsiella_phage(20.0%)

lysis,tRNA,integrase,head,terminase

attL 2064382:2064396|attR 2116585:2116599

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2064382:2064396	attL	NA	NA	NA	NA
WP_089191829.1\|2072829_2073282_-	hypothetical protein	A0A0M4RTP2	Salmonella_phage	2.9e-13	51.2
WP_145957769.1\|2073281_2074961_-	hypothetical protein	H9C0Y2	Aeromonas_phage	5.8e-27	53.2
WP_089191830.1\|2074962_2075550_-	DUF2612 domain-containing protein	A0A2R3UAM9	Myoviridae_environmental_samples	2.7e-35	38.7
WP_089191831.1\|2075551_2076799_-	hypothetical protein	A0A077KGW9	Edwardsiella_phage	1.0e-100	50.2
WP_038875867.1\|2076795_2077152_-	hypothetical protein	A0A077KCA1	Edwardsiella_phage	9.1e-23	50.0
WP_089191832.1\|2077160_2077838_-	oxidoreductase	A0A077KAY0	Edwardsiella_phage	6.2e-36	39.4
WP_089191833.1\|2077839_2078685_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	1.9e-34	32.2
WP_047730622.1\|2078681_2078984_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	1.3e-25	52.5
WP_060432110.1\|2078983_2079790_-	hypothetical protein	NA	NA	NA	NA
WP_089191834.1\|2079786_2081673_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.3e-51	51.2
WP_049194151.1\|2081887_2082292_-	hypothetical protein	H9C0W7	Aeromonas_phage	4.1e-19	44.5
WP_038875737.1\|2082291_2082729_-	hypothetical protein	A0A077K9T0	Edwardsiella_phage	2.3e-20	38.1
WP_089191835.1\|2082728_2084213_-	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	1.3e-91	38.2
WP_089191836.1\|2084193_2084745_-	hypothetical protein	NA	NA	NA	NA
WP_038875746.1\|2084729_2085095_-	hypothetical protein	NA	NA	NA	NA
WP_089191837.1\|2085091_2085571_-	hypothetical protein	I6ZXX4	Escherichia_phage	6.6e-08	30.5
WP_038875751.1\|2085571_2086042_-	DUF4054 domain-containing protein	K4HYQ8	Acinetobacter_phage	4.8e-11	37.0
WP_089191838.1\|2086045_2086390_-	hypothetical protein	A0A1X9SFA9	Acinetobacter_phage	2.6e-14	40.5
WP_038875757.1\|2086393_2087422_-	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	1.2e-83	49.7
WP_038875760.1\|2087421_2087904_-	hypothetical protein	E2GLV4	Acinetobacter_phage	3.0e-29	51.5
WP_089191839.1\|2087905_2089231_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	1.0e-71	40.9
WP_089192607.1\|2089234_2089918_-\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	2.4e-56	50.0
WP_089191840.1\|2089958_2091497_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	1.5e-98	42.5
WP_089191841.1\|2091496_2092909_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.4e-186	69.9
WP_089191842.1\|2092838_2093864_-\|terminase	terminase	A0A0U2RXW9	Escherichia_phage	1.0e-50	49.5
WP_089191843.1\|2094286_2094673_-	DUF2570 family protein	NA	NA	NA	NA
WP_089191844.1\|2094669_2095200_-	lysozyme	H9C184	Pectobacterium_phage	1.8e-83	84.0
WP_089191845.1\|2095199_2095463_-\|lysis	lysis protein	Q7Y3V4	Yersinia_phage	1.6e-19	51.7
WP_089191846.1\|2095948_2096161_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.4e-23	79.1
WP_089191847.1\|2096669_2097506_-	antitermination protein	K7PKS8	Enterobacteria_phage	1.2e-62	48.9
WP_089191848.1\|2097502_2097787_-	DUF1364 domain-containing protein	A0A088CE53	Shigella_phage	4.0e-37	77.7
WP_089191849.1\|2097786_2098380_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.4e-92	83.6
WP_089191850.1\|2098422_2098662_-	hypothetical protein	H6WRY6	Salmonella_phage	8.3e-20	64.7
WP_089191851.1\|2100037_2100688_-	hypothetical protein	NA	NA	NA	NA
WP_089191852.1\|2100832_2101213_-	hypothetical protein	NA	NA	NA	NA
WP_089191853.1\|2101228_2101969_-	ATP-binding protein	S4TNF5	Salmonella_phage	7.3e-99	73.0
WP_089191854.1\|2101983_2102823_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	7.1e-58	48.5
WP_089192608.1\|2102822_2103716_-	site-specific DNA-methyltransferase	M4R1Z8	Salicola_phage	3.1e-96	57.3
WP_089191855.1\|2103778_2104021_-	hypothetical protein	NA	NA	NA	NA
WP_047730594.1\|2104036_2104498_-	hypothetical protein	H9C162	Pectobacterium_phage	1.1e-17	44.0
WP_038875813.1\|2104508_2104754_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	3.6e-26	80.3
WP_089191856.1\|2104857_2105244_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	3.0e-35	58.9
WP_141969484.1\|2105889_2106183_+	hypothetical protein	NA	NA	NA	NA
WP_145957770.1\|2106700_2109928_+	hypothetical protein	H6WRX1	Salmonella_phage	5.0e-144	38.2
WP_089191858.1\|2109939_2111058_+	hypothetical protein	A0A2I7RQF1	Vibrio_phage	7.0e-61	46.9
WP_089191859.1\|2111051_2111237_+	hypothetical protein	NA	NA	NA	NA
WP_047730590.1\|2111300_2111513_+	DUF1233 family excisionase	A0A0U2RY08	Escherichia_phage	4.8e-19	59.2
WP_089191860.1\|2111512_2112769_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	1.2e-149	61.0
WP_089191861.1\|2112817_2113756_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.9e-137	92.6
2116585:2116599	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2888869 : 2909806

Klebsiella_phage(27.78%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089192039.1\|2888869_2890891_-\|tail	phage tail protein	A0A1I9SF20	Klebsiella_phage	8.9e-30	47.3
WP_089192040.1\|2890887_2892045_-\|tail	tail fiber domain-containing protein	A0A1V0E5M2	Salmonella_phage	1.1e-43	57.8
WP_089192041.1\|2892095_2895683_-	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	0.0e+00	66.0
WP_042785075.1\|2895736_2896342_-\|tail	tail assembly protein	F1C572	Cronobacter_phage	2.2e-53	56.4
WP_127554718.1\|2896375_2896708_-	hypothetical protein	NA	NA	NA	NA
WP_089192042.1\|2896745_2897450_-	C40 family peptidase	K7PGR2	Enterobacteria_phage	6.3e-108	75.7
WP_089192623.1\|2897459_2898209_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	3.8e-95	64.5
WP_004935824.1\|2898221_2898560_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.1e-33	60.0
WP_089192043.1\|2898559_2901184_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	3.0e-14	28.5
WP_004935830.1\|2901083_2901305_-	hypothetical protein	Q6UAW9	Klebsiella_phage	1.7e-11	47.9
WP_025160180.1\|2901322_2901688_-\|tail	phage tail protein	Q7Y401	Yersinia_phage	6.5e-24	45.0
WP_033652513.1\|2901814_2902270_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	2.5e-57	75.5
WP_089192044.1\|2902310_2902703_-	hypothetical protein	Q7Y404	Yersinia_phage	6.1e-20	46.0
WP_089192045.1\|2902699_2903089_-	hypothetical protein	Q7Y405	Yersinia_phage	1.4e-24	41.3
WP_042785079.1\|2903146_2903587_-	lysozyme	A0A0M5M782	Salmonella_phage	3.4e-43	62.3
WP_033652509.1\|2903573_2903894_-\|holin	holin	F1C5D1	Cronobacter_phage	1.1e-40	81.0
WP_042785760.1\|2904795_2905158_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	6.0e-38	64.6
WP_089192046.1\|2905400_2906078_+	S26 family signal peptidase	K7PK07	Enterobacteria_phage	3.2e-08	29.6
WP_004935874.1\|2906496_2906826_-	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA
WP_089192047.1\|2906953_2907421_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_033651920.1\|2907529_2908108_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_089192048.1\|2908101_2908518_-	glyoxalase	NA	NA	NA	NA
WP_089192049.1\|2908675_2909806_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.4e-104	53.9

DBSCAN-SWA_6

3184527 : 3191621

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033644018.1\|3184527_3184881_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-19	47.0
WP_033644019.1\|3185081_3185312_+	hypothetical protein	J9Q735	Salmonella_phage	4.2e-13	50.7
WP_047025631.1\|3185325_3185865_+	DNA-binding protein	J9Q7G7	Salmonella_phage	4.0e-46	56.6
WP_025159568.1\|3185878_3186580_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_016926729.1\|3186852_3187368_+	hypothetical protein	NA	NA	NA	NA
WP_016926728.1\|3187401_3187650_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_033651534.1\|3187697_3188987_-	uracil permease	Q9KX94	Enterobacteria_phage	6.0e-64	38.2
WP_004941642.1\|3189063_3189690_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_025303843.1\|3189945_3190983_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	3.8e-69	41.9
WP_033651535.1\|3190982_3191621_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	3.2e-26	39.2

DBSCAN-SWA_7

3262962 : 3307090

Enterobacter_phage(21.05%)

integrase,holin,transposase,terminase,tail

attL 3282411:3282427|attR 3306061:3306077

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089192137.1\|3262962_3263196_-\|holin	holin	H9C183	Pectobacterium_phage	1.2e-20	69.6
WP_089192138.1\|3263227_3265828_-	hypothetical protein	G9L6E4	Escherichia_phage	4.8e-52	35.8
WP_050438967.1\|3266014_3266263_+	hypothetical protein	NA	NA	NA	NA
WP_145957774.1\|3266385_3266685_-	hypothetical protein	NA	NA	NA	NA
WP_089192139.1\|3266691_3270081_-	hypothetical protein	A0A1E1GEP2	Vibrio_phage	5.2e-184	36.8
WP_089192140.1\|3270080_3271601_-	hypothetical protein	NA	NA	NA	NA
WP_089191633.1\|3271732_3272494_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.0e-34	34.7
WP_089191634.1\|3272490_3273990_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_145957775.1\|3274076_3275252_-	hypothetical protein	A0A193GYI3	Enterobacter_phage	2.2e-81	44.3
WP_089192142.1\|3275261_3275831_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	2.8e-29	46.7
WP_089192143.1\|3275823_3276297_-	hypothetical protein	Q858G2	Salmonella_phage	1.1e-52	66.0
WP_089192144.1\|3276296_3278798_-	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	3.6e-307	61.5
WP_033648873.1\|3278797_3279406_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	7.7e-62	61.4
WP_089192145.1\|3279405_3279729_-	hypothetical protein	T1SBJ0	Salmonella_phage	3.5e-21	54.9
WP_089192627.1\|3279768_3280056_-	hypothetical protein	NA	NA	NA	NA
WP_089192146.1\|3280076_3280523_-	hypothetical protein	A0A193GYT9	Enterobacter_phage	6.1e-32	57.4
WP_060450525.1\|3280576_3281560_-	hypothetical protein	G9L6C5	Escherichia_phage	1.1e-139	74.0
WP_089192147.1\|3281566_3282277_-	peptidase	G9L6C4	Escherichia_phage	2.0e-45	59.4
3282411:3282427	attL	NA	NA	NA	NA
WP_089192628.1\|3282519_3282816_-	hypothetical protein	Q2A090	Sodalis_phage	9.3e-29	72.9
WP_075685980.1\|3282815_3284501_-\|tail	phage tail protein	T1S9Z7	Salmonella_phage	8.1e-186	58.3
WP_089192148.1\|3285044_3285233_+	hypothetical protein	NA	NA	NA	NA
WP_089192629.1\|3285243_3285681_+	hypothetical protein	I6RSN8	Salmonella_phage	4.7e-37	55.0
WP_089192149.1\|3285706_3287194_-\|terminase	terminase	W6MW26	Pseudomonas_phage	4.7e-214	71.8
WP_089192150.1\|3287186_3287669_-\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	3.7e-19	37.9
WP_089192151.1\|3287775_3288033_-	hypothetical protein	A0A1V0E5L9	Salmonella_phage	1.6e-16	51.8
WP_089192152.1\|3288105_3288492_-	hypothetical protein	H9C172	Pectobacterium_phage	7.9e-12	35.1
WP_089192153.1\|3289174_3289483_-	hypothetical protein	NA	NA	NA	NA
WP_089192154.1\|3289485_3290070_-	hypothetical protein	R9W086	Serratia_phage	7.7e-19	37.4
WP_145957776.1\|3290391_3290580_-	hypothetical protein	NA	NA	NA	NA
WP_089192155.1\|3290572_3290986_-	hypothetical protein	A0A2R3UAL4	Myoviridae_environmental_samples	1.3e-28	55.0
WP_033648893.1\|3291679_3291892_-	TraR/DksA family transcriptional regulator	Q9ZXI6	Pseudomonas_virus	4.0e-10	50.8
WP_089192156.1\|3291894_3292365_-	hypothetical protein	A0A193GYM2	Enterobacter_phage	2.8e-59	75.5
WP_049234889.1\|3292574_3293018_-	hypothetical protein	A0A193GYX1	Enterobacter_phage	2.6e-19	38.1
WP_033632341.1\|3293948_3294155_-	hypothetical protein	A0A193GYW4	Enterobacter_phage	2.5e-09	45.0
WP_033648895.1\|3294297_3294516_-	hypothetical protein	Q858D6	Salmonella_phage	1.5e-15	58.0
WP_033632339.1\|3294664_3295261_+	helix-turn-helix transcriptional regulator	G9L6A6	Escherichia_phage	7.3e-49	51.8
WP_072270178.1\|3295535_3295688_+	DUF2985 domain-containing protein	T1SA20	Salmonella_phage	1.6e-05	50.0
WP_089192157.1\|3295684_3296731_+	hypothetical protein	M9P0E1	Enterobacteria_phage	5.1e-37	59.5
WP_089192158.1\|3296738_3297044_+	hypothetical protein	NA	NA	NA	NA
WP_089192159.1\|3297043_3297865_+	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	4.6e-126	78.3
WP_089192160.1\|3297861_3298467_+	recombinase RecT	E5AGD9	Erwinia_phage	3.1e-71	68.7
WP_089191634.1\|3298497_3299997_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_089191633.1\|3299993_3300755_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.0e-34	34.7
WP_145957777.1\|3300802_3301162_+	hypothetical protein	A0A193GYL3	Enterobacter_phage	3.5e-30	60.9
WP_089192162.1\|3301202_3301454_+	AlpA family phage regulatory protein	A0A193GYW1	Enterobacter_phage	7.1e-14	48.8
WP_089192163.1\|3301571_3302234_+	DNA methyltransferase	A0A248SKY3	Klebsiella_phage	3.3e-82	66.0
WP_089192164.1\|3302230_3302515_+	hypothetical protein	NA	NA	NA	NA
WP_050438971.1\|3302518_3303721_-\|integrase	site-specific integrase	T1S9J3	Salmonella_phage	1.3e-156	69.5
WP_021504498.1\|3303945_3305523_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_004941460.1\|3305626_3307090_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.0e-87	38.5
3306061:3306077	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4173383 : 4182310

environmental_Halophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089192321.1\|4173383_4175462_+	hypothetical protein	H9YQA8	environmental_Halophage	1.3e-52	71.9
WP_089192322.1\|4175502_4176720_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	4.7e-26	25.9
WP_033645386.1\|4176851_4177427_-	aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.1e-69	63.2
WP_033645261.1\|4177499_4179023_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	1.9e-77	42.6
WP_025304522.1\|4179174_4179900_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_033651731.1\|4179899_4181585_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.5e-224	72.8
WP_033636286.1\|4181740_4182310_-	peptidylprolyl isomerase A	A0A1V0S9I2	Catovirus	1.3e-07	31.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage