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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019683 Campylobacter sputorum bv. faecalis CCUG 20703 chromosome, complete genome 6 crisprs csa3,cas1,cas2,cas4,cas3,cas5,cas7,cas6,WYL,DEDDh 3 11 0 0

Results visualization

1. NZ_CP019683
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019683_1 613800-613941 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019683_2 793625-793785 Unclear NA
2 spacers
cas1,cas2,cas4,cas3,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019683_3 795892-798279 Unclear NA
36 spacers
cas1,cas2,cas4,cas3,cas5,cas7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019683_4 798366-800172 Unclear NA
27 spacers
cas1,cas2,cas4,cas3,cas5,cas7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019683_5 813239-813380 Unclear NA
1 spacers
cas6,cas7,cas5,cas3,cas4,cas2,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019683_6 1552837-1552978 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019683_3 3.25|797492|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797492-797525 34 NZ_CP019683.1 501562-501595 0 1.0
NZ_CP019683_4 4.4|798591|40|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 798591-798630 40 NZ_CP019683.1 844560-844599 0 1.0
NZ_CP019683_4 4.27|800105|38|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 800105-800142 38 NZ_CP019683.1 872998-873035 0 1.0

1. spacer 3.25|797492|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to position: 501562-501595, mismatch: 0, identity: 1.0

atctaggagatatggtaattcacctttttgatcc	CRISPR spacer
atctaggagatatggtaattcacctttttgatcc	Protospacer
**********************************

2. spacer 4.4|798591|40|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to position: 844560-844599, mismatch: 0, identity: 1.0

tgctgctggactttgtatgatagcaaataccgctcctgtt	CRISPR spacer
tgctgctggactttgtatgatagcaaataccgctcctgtt	Protospacer
****************************************

3. spacer 4.27|800105|38|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to position: 872998-873035, mismatch: 0, identity: 1.0

taaaacagaaagagagaaatttgaagcagttataaaag	CRISPR spacer
taaaacagaaagagagaaatttgaagcagttataaaag	Protospacer
**************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019683_3 3.19|797101|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797101-797134 34 NZ_CP043436 Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence 24608-24641 0 1.0
NZ_CP019683_3 3.19|797101|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797101-797134 34 NZ_CP014570 Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence 808-841 0 1.0
NZ_CP019683_3 3.19|797101|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797101-797134 34 NZ_CP008812 Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence 23103-23136 0 1.0
NZ_CP019683_3 3.29|797755|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797755-797788 34 MN694156 Marine virus AFVG_250M53, complete genome 36747-36780 7 0.794
NZ_CP019683_2 2.2|793721|35|NZ_CP019683|CRISPRCasFinder 793721-793755 35 MT701588 Klebsiella phage Metamorpho, complete genome 7307-7341 8 0.771
NZ_CP019683_3 3.32|797952|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797952-797985 34 KT962247 Cellulophaga phage phi17:2_18, complete genome 57119-57152 8 0.765
NZ_CP019683_3 3.32|797952|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797952-797985 34 NC_021798 Cellulophaga phage phi17:2, complete genome 57119-57152 8 0.765
NZ_CP019683_3 3.25|797492|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797492-797525 34 NZ_CP024036 Bacillus aryabhattai strain K13 plasmid unnamed1 102905-102938 9 0.735
NZ_CP019683_3 3.29|797755|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797755-797788 34 MN693021 Marine virus AFVG_117M32, complete genome 17086-17119 9 0.735
NZ_CP019683_4 4.14|799253|37|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 799253-799289 37 NC_015417 Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence 24586-24622 9 0.757
NZ_CP019683_4 4.15|799320|35|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 799320-799354 35 MN830257 Lactobacillus phage JNU_P11, complete genome 19360-19394 9 0.743
NZ_CP019683_4 4.24|799908|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 799908-799941 34 NZ_AP018501 Lactococcus lactis subsp. cremoris strain C4 plasmid pC42, complete sequence 2616-2649 9 0.735
NZ_CP019683_3 3.3|796054|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 796054-796087 34 NZ_CP020439 Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence 29058-29091 10 0.706
NZ_CP019683_3 3.3|796054|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 796054-796087 34 NZ_CP020439 Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence 214005-214038 10 0.706
NZ_CP019683_3 3.19|797101|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797101-797134 34 MH617494 Microviridae sp. isolate ctba078, complete genome 3340-3373 10 0.706
NZ_CP019683_3 3.29|797755|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797755-797788 34 MN693374 Marine virus AFVG_25M38, complete genome 37610-37643 10 0.706
NZ_CP019683_3 3.36|798214|35|NZ_CP019683|CRISPRCasFinder,CRT 798214-798248 35 NZ_CP015333 Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence 18766-18800 10 0.714
NZ_CP019683_4 4.3|798527|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 798527-798560 34 NC_012219 Clostridium botulinum plasmid pC2C203U28 DNA, complete sequence, serotype: type C, strain: (C)-203U28 1062-1095 10 0.706
NZ_CP019683_4 4.3|798527|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 798527-798560 34 NZ_CP029459 Clostridium novyi strain 150557 plasmid pCN1, complete sequence 17103-17136 10 0.706
NZ_CP019683_3 3.29|797755|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT 797755-797788 34 NZ_CP036355 Bacillus sp. SYJ plasmid unnamed1, complete sequence 81389-81422 11 0.676

1. spacer 3.19|797101|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043436 (Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence) position: , mismatch: 0, identity: 1.0

tctaaaaaaacttttttcatatcttactttcttt	CRISPR spacer
tctaaaaaaacttttttcatatcttactttcttt	Protospacer
**********************************

2. spacer 3.19|797101|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014570 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence) position: , mismatch: 0, identity: 1.0

tctaaaaaaacttttttcatatcttactttcttt	CRISPR spacer
tctaaaaaaacttttttcatatcttactttcttt	Protospacer
**********************************

3. spacer 3.19|797101|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008812 (Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence) position: , mismatch: 0, identity: 1.0

tctaaaaaaacttttttcatatcttactttcttt	CRISPR spacer
tctaaaaaaacttttttcatatcttactttcttt	Protospacer
**********************************

4. spacer 3.29|797755|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to MN694156 (Marine virus AFVG_250M53, complete genome) position: , mismatch: 7, identity: 0.794

cagatattaaaaaaattattgttcctgtacctgt-	CRISPR spacer
caaatcttaaaaaaattattgtt-caataccaggg	Protospacer
**.** ***************** * .**** *  

5. spacer 2.2|793721|35|NZ_CP019683|CRISPRCasFinder matches to MT701588 (Klebsiella phage Metamorpho, complete genome) position: , mismatch: 8, identity: 0.771

aaaaaattagatgatttctttgggcttgaacttga	CRISPR spacer
gatgtatacgatgatttctttgtgcttaaacttga	Protospacer
.* . **  ************* ****.*******

6. spacer 3.32|797952|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to KT962247 (Cellulophaga phage phi17:2_18, complete genome) position: , mismatch: 8, identity: 0.765

---tccccaaaccttgattgcacttttaattgagtta	CRISPR spacer
acattccta---cttgattgtacttctaattgagttc	Protospacer
   *.**.*   ********.****.********** 

7. spacer 3.32|797952|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NC_021798 (Cellulophaga phage phi17:2, complete genome) position: , mismatch: 8, identity: 0.765

---tccccaaaccttgattgcacttttaattgagtta	CRISPR spacer
acattccta---cttgattgtacttctaattgagttc	Protospacer
   *.**.*   ********.****.********** 

8. spacer 3.25|797492|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024036 (Bacillus aryabhattai strain K13 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

atctaggagatatggtaattcacctttttgatcc	CRISPR spacer
gtgaaatttataaggtaattcacctttttgttcc	Protospacer
.*  *.   *** ***************** ***

9. spacer 3.29|797755|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to MN693021 (Marine virus AFVG_117M32, complete genome) position: , mismatch: 9, identity: 0.735

cagatattaaaaaaattattgttcctgtacctgt	CRISPR spacer
gaagtattacaaaatttattgttcctgtttgggt	Protospacer
 *..***** **** ************* .  **

10. spacer 4.14|799253|37|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 9, identity: 0.757

atagtgaagatattgattttggagatattca-aatacc	CRISPR spacer
ttatagaagatattgatattgaagatattcatgatga-	Protospacer
 **  ************ ***.********* .**.  

11. spacer 4.15|799320|35|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to MN830257 (Lactobacillus phage JNU_P11, complete genome) position: , mismatch: 9, identity: 0.743

aaacagtggtgtttcattttcttcactaccaccat	CRISPR spacer
aacagatttggtttcattttcttcattaccatcat	Protospacer
**  ..*   ***************.*****.***

12. spacer 4.24|799908|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018501 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC42, complete sequence) position: , mismatch: 9, identity: 0.735

tcaaatgagatacaaaaagctagtattgcagaga	CRISPR spacer
cacaatgagttacaaaaagctattattgaggaat	Protospacer
.  ****** ************ ***** .**. 

13. spacer 3.3|796054|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 10, identity: 0.706

aagaggcggaaaacgaaaaattgagacttcagat	CRISPR spacer
ttctctctgataaagaaaaattgagacttcagaa	Protospacer
      * ** ** ******************* 

14. spacer 3.3|796054|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 10, identity: 0.706

aagaggcggaaaacgaaaaattgagacttcagat	CRISPR spacer
ttctctctgataaagaaaaattgagacttcagaa	Protospacer
      * ** ** ******************* 

15. spacer 3.19|797101|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to MH617494 (Microviridae sp. isolate ctba078, complete genome) position: , mismatch: 10, identity: 0.706

tctaaaaaaacttttttcatatcttactttcttt	CRISPR spacer
tctaaaaaacctttttttatatctccttggagat	Protospacer
********* *******.******. .*     *

16. spacer 3.29|797755|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to MN693374 (Marine virus AFVG_25M38, complete genome) position: , mismatch: 10, identity: 0.706

cagatattaaaaaaattattgttcctgtacctgt	CRISPR spacer
aagatattaaaaaaattatggatccgttggcaag	Protospacer
 ****************** * ***  *. * . 

17. spacer 3.36|798214|35|NZ_CP019683|CRISPRCasFinder,CRT matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 10, identity: 0.714

ttcgttttgtttttgtatatcttttacagctctta	CRISPR spacer
ttctttttgtttttgtgtatcttttgaaagccagt	Protospacer
*** ************.********. *. .*   

18. spacer 4.3|798527|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NC_012219 (Clostridium botulinum plasmid pC2C203U28 DNA, complete sequence, serotype: type C, strain: (C)-203U28) position: , mismatch: 10, identity: 0.706

cattagaacttattaaaggatttactgagcttga	CRISPR spacer
ctttagaatttaataaaggatttactctaccctt	Protospacer
* ******.*** *************  .*..  

19. spacer 4.3|798527|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029459 (Clostridium novyi strain 150557 plasmid pCN1, complete sequence) position: , mismatch: 10, identity: 0.706

cattagaacttattaaaggatttactgagcttga	CRISPR spacer
ctttagaatttaataaaggatttactctaccctt	Protospacer
* ******.*** *************  .*..  

20. spacer 3.29|797755|34|NZ_CP019683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036355 (Bacillus sp. SYJ plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

cagatattaaaaaaattattgttcctgtacctgt	CRISPR spacer
atgatattaaaaaaattaatggtcctaatgttac	Protospacer
  **************** ** ****.   .*..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage