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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019684 Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589 chromosome, complete genome 1 crisprs csa3,cas1,cas2,cas4,cas3,cas5,cas7,cas6,DEDDh 3 7 0 0

Results visualization

1. NZ_CP019684
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019684_1 791447-793848 Unclear NA
36 spacers
cas1,cas2,cas4,cas3,cas5,cas7,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019684_1 1.13|792266|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792266-792301 36 NZ_CP019684.1 1670646-1670681 0 1.0
NZ_CP019684_1 1.15|792397|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792397-792432 36 NZ_CP019684.1 226640-226675 0 1.0
NZ_CP019684_1 1.34|793649|39|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 793649-793687 39 NZ_CP019684.1 503057-503095 0 1.0

1. spacer 1.13|792266|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to position: 1670646-1670681, mismatch: 0, identity: 1.0

atagttatgacaataacagccacaacacttatcaga	CRISPR spacer
atagttatgacaataacagccacaacacttatcaga	Protospacer
************************************

2. spacer 1.15|792397|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to position: 226640-226675, mismatch: 0, identity: 1.0

aaatgtagccatagctaccatacttcaatacaccgc	CRISPR spacer
aaatgtagccatagctaccatacttcaatacaccgc	Protospacer
************************************

3. spacer 1.34|793649|39|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to position: 503057-503095, mismatch: 0, identity: 1.0

actattttctaataaaaagtagatatttccgtctatatc	CRISPR spacer
actattttctaataaaaagtagatatttccgtctatatc	Protospacer
***************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019684_1 1.31|793451|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 793451-793486 36 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 471092-471127 5 0.861
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP045188 Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence 89558-89592 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP045188 Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence 98872-98906 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP045188 Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence 108186-108220 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP049354 Escherichia coli strain T28R plasmid pT28R-1, complete sequence 58242-58276 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP037911 Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence 74744-74778 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP046717 Escherichia coli strain T16R plasmid pT16R-1, complete sequence 58242-58276 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP046004 Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence 28416-28450 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP041453 Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence 29351-29385 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP041453 Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence 38665-38699 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 MN848327 Escherichia coli strain T16RC plasmid pT16RC-1, complete sequence 10783-10817 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP041449 Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence 58243-58277 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_MN101858 Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence 75746-75780 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_MN101856 Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence 74362-74396 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP041286 Escherichia coli strain 54 plasmid p54-tetX, complete sequence 34976-35010 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_CP041443 Escherichia coli strain YPE12 plasmid pYPE12-101k-tetX4, complete sequence 32491-32525 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 NZ_MK134376 Escherichia coli strain 47EC plasmid p47EC, complete sequence 166871-166905 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 MT219825 Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence 138865-138899 7 0.8
NZ_CP019684_1 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792925-792959 35 MT219824 Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence 19258-19292 7 0.8
NZ_CP019684_1 1.31|793451|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 793451-793486 36 MN693286 Marine virus AFVG_25M92, complete genome 10393-10428 7 0.806
NZ_CP019684_1 1.32|793517|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 793517-793552 36 MN855607 Siphoviridae sp. isolate 432, complete genome 2379-2414 9 0.75
NZ_CP019684_1 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792202-792235 34 NZ_CP016593 Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence 207180-207213 10 0.706
NZ_CP019684_1 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792202-792235 34 NC_017386 Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence 142380-142413 10 0.706
NZ_CP019684_1 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792202-792235 34 NC_014621 Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence 109214-109247 10 0.706
NZ_CP019684_1 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792202-792235 34 NZ_CP012909 Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence 207188-207221 10 0.706
NZ_CP019684_1 1.17|792529|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792529-792562 34 NZ_CP011156 Bacillus cereus strain HN001 plasmid pRML01, complete sequence 287391-287424 10 0.706
NZ_CP019684_1 1.18|792593|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792593-792627 35 JX878496 Serratia phage phiMAM1, complete genome 39955-39989 10 0.714
NZ_CP019684_1 1.18|792593|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792593-792627 35 MF285619 Serratia phage 2050H1, complete genome 41167-41201 10 0.714
NZ_CP019684_1 1.10|792070|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792070-792104 35 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 330965-330999 11 0.686
NZ_CP019684_1 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR 792202-792235 34 NZ_CP014605 Borrelia anserina Es isolate UTHSCSA plasmid lpJ, complete sequence 10284-10317 11 0.676

1. spacer 1.31|793451|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 5, identity: 0.861

ccaaacttaaatcttgacaaggaaaacctcctgtta	CRISPR spacer
caacactaaaatcttgacaaggaaaaccacctgtaa	Protospacer
* * *** ******************** ***** *

2. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045188 (Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

3. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045188 (Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

4. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045188 (Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

5. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

6. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

7. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

8. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

9. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041453 (Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

10. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041453 (Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

11. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to MN848327 (Escherichia coli strain T16RC plasmid pT16RC-1, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

12. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

13. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

14. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

15. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041286 (Escherichia coli strain 54 plasmid p54-tetX, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

16. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041443 (Escherichia coli strain YPE12 plasmid pYPE12-101k-tetX4, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

17. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK134376 (Escherichia coli strain 47EC plasmid p47EC, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

18. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

19. spacer 1.23|792925|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 7, identity: 0.8

--tttgtggttcaaatgttggtattacgaaatattta	CRISPR spacer
aatttttag--aaaatattggtattacaaaatattta	Protospacer
  *** *.*   ****.**********.*********

20. spacer 1.31|793451|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 7, identity: 0.806

ccaaacttaaatcttgacaaggaaaacctcctgtta	CRISPR spacer
ccacggataaatcttgacatggaaagcctcctgtga	Protospacer
*** .  ************ *****.******** *

21. spacer 1.32|793517|36|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to MN855607 (Siphoviridae sp. isolate 432, complete genome) position: , mismatch: 9, identity: 0.75

tttgctttattattttttctttatctttcttatcag	CRISPR spacer
tacccctttttattttttctttatctttattacaat	Protospacer
* . *.** ******************* ***. * 

22. spacer 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016593 (Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence) position: , mismatch: 10, identity: 0.706

acaaaacaaagccaaataaagccaccagcaccac	CRISPR spacer
aagcgccaaagccaaagaacgccaccagcaagat	Protospacer
* . . ********** ** **********  *.

23. spacer 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NC_017386 (Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.706

acaaaacaaagccaaataaagccaccagcaccac	CRISPR spacer
aagcgccaaagccaaagaacgccaccagcaagat	Protospacer
* . . ********** ** **********  *.

24. spacer 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NC_014621 (Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence) position: , mismatch: 10, identity: 0.706

acaaaacaaagccaaataaagccaccagcaccac	CRISPR spacer
aagcgccaaagccaaagaacgccaccagcaagat	Protospacer
* . . ********** ** **********  *.

25. spacer 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012909 (Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.706

acaaaacaaagccaaataaagccaccagcaccac	CRISPR spacer
aagcgccaaagccaaagaacgccaccagcaagat	Protospacer
* . . ********** ** **********  *.

26. spacer 1.17|792529|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 10, identity: 0.706

ttttaattcgtaaatttctaaccatttgattaag	CRISPR spacer
atttaattcgtaattttcaaaccatggttcttaa	Protospacer
 ************ **** ******    .* *.

27. spacer 1.18|792593|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to JX878496 (Serratia phage phiMAM1, complete genome) position: , mismatch: 10, identity: 0.714

gtctatctttgccattccagttgtttacagttgaa	CRISPR spacer
tatcaactttgccattacagttggttacagtgcat	Protospacer
  ..* ********** ****** *******  * 

28. spacer 1.18|792593|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to MF285619 (Serratia phage 2050H1, complete genome) position: , mismatch: 10, identity: 0.714

gtctatctttgccattccagttgtttacagttgaa	CRISPR spacer
tatcaactttgccattacagttggttacagtgcat	Protospacer
  ..* ********** ****** *******  * 

29. spacer 1.10|792070|35|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

cctgttggattttttatattgtctgaatatgtact	CRISPR spacer
gaatatatatcttttatattgtctaaatatgtatc	Protospacer
     *. **.*************.********..

30. spacer 1.12|792202|34|NZ_CP019684|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014605 (Borrelia anserina Es isolate UTHSCSA plasmid lpJ, complete sequence) position: , mismatch: 11, identity: 0.676

acaaaacaaagccaaataaagccaccagcaccac	CRISPR spacer
tcaaaacaaaacccaataaagccactgaggtttc	Protospacer
 *********.** ***********... ... *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage