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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011037 Pseudoalteromonas nigrifaciens strain KMM 661 chromosome II, complete sequence 0 crisprs c2c9_V-U4,cas14j,csa3,cas3,DinG 0 0 1 0
NZ_CP011038 Pseudoalteromonas nigrifaciens strain KMM 661 plasmid unnamed, complete sequence 1 crisprs NA 0 1 0 0
NZ_CP011036 Pseudoalteromonas nigrifaciens strain KMM 661 chromosome I, complete sequence 3 crisprs cas14j,c2c9_V-U4,cas5f,cas7f,cas6f,DEDDh,cas3,RT,WYL,csx1,DinG,csa3 0 2 10 0

Results visualization

1. NZ_CP011036
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011036_1 439946-440161 Unclear NA
3 spacers
cas6f,cas7f,cas5f

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011036_2 459818-459923 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011036_3 573909-574161 Unclear NA
2 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011036_1 1.2|440042|24|NZ_CP011036|PILER-CR 440042-440065 24 MK424903 Pseudoalteromonas phage GXT1010, partial genome 298-321 2 0.917
NZ_CP011036_1 1.4|440042|31|NZ_CP011036|CRISPRCasFinder,CRT 440042-440072 31 MK424903 Pseudoalteromonas phage GXT1010, partial genome 298-328 2 0.935

1. spacer 1.2|440042|24|NZ_CP011036|PILER-CR matches to MK424903 (Pseudoalteromonas phage GXT1010, partial genome) position: , mismatch: 2, identity: 0.917

atatgcacggcaataatacagcgt	CRISPR spacer
acatgcacggcaacaatacagcgt	Protospacer
*.***********.**********

2. spacer 1.4|440042|31|NZ_CP011036|CRISPRCasFinder,CRT matches to MK424903 (Pseudoalteromonas phage GXT1010, partial genome) position: , mismatch: 2, identity: 0.935

atatgcacggcaataatacagcgtttgcaaa	CRISPR spacer
acatgcacggcaacaatacagcgtttgcaaa	Protospacer
*.***********.*****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 297619 : 351599 48 Streptococcus_phage(16.67%) transposase,protease,tRNA NA
DBSCAN-SWA_2 355757 : 430888 56 uncultured_Mediterranean_phage(15.0%) transposase,protease,tRNA NA
DBSCAN-SWA_3 453943 : 520643 51 Bacillus_phage(18.18%) transposase,tRNA,integrase attL 489632:489649|attR 521144:521161
DBSCAN-SWA_4 1090416 : 1101183 8 Agrobacterium_phage(33.33%) NA NA
DBSCAN-SWA_5 1343054 : 1397004 71 uncultured_Mediterranean_phage(59.09%) portal,capsid,terminase,integrase attL 1342826:1342841|attR 1398228:1398243
DBSCAN-SWA_6 1452323 : 1483537 40 Pseudoalteromonas_phage(80.56%) portal,capsid,terminase,head,tail,integrase attL 1452136:1452158|attR 1484375:1484397
DBSCAN-SWA_7 1768248 : 1775531 9 Vibrio_phage(42.86%) capsid NA
DBSCAN-SWA_8 1786981 : 1793157 10 Pseudomonas_virus(33.33%) capsid NA
DBSCAN-SWA_9 1987974 : 2044226 52 Leptospira_phage(38.46%) transposase,protease,tRNA NA
DBSCAN-SWA_10 3052721 : 3092120 36 Burkholderia_virus(18.18%) transposase,tRNA,integrase attL 3074577:3074598|attR 3092220:3092241
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP011038
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011038_1 6033-6150 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011038_1 1.1|6069|46|NZ_CP011038|CRISPRCasFinder 6069-6114 46 NZ_CP011038 Pseudoalteromonas nigrifaciens strain KMM 661 plasmid unnamed, complete sequence 6069-6114 0 1.0
NZ_CP011038_1 1.1|6069|46|NZ_CP011038|CRISPRCasFinder 6069-6114 46 NZ_CP011038 Pseudoalteromonas nigrifaciens strain KMM 661 plasmid unnamed, complete sequence 6151-6196 2 0.957

1. spacer 1.1|6069|46|NZ_CP011038|CRISPRCasFinder matches to NZ_CP011038 (Pseudoalteromonas nigrifaciens strain KMM 661 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acccctataggggcgctattttagaacacacttaattaaaattgaa	CRISPR spacer
acccctataggggcgctattttagaacacacttaattaaaattgaa	Protospacer
**********************************************

2. spacer 1.1|6069|46|NZ_CP011038|CRISPRCasFinder matches to NZ_CP011038 (Pseudoalteromonas nigrifaciens strain KMM 661 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.957

acccctataggggcgctattttagaacacacttaattaaaattgaa	CRISPR spacer
gcccctttaggggcgctattttagaacacacttaattaaaattgaa	Protospacer
.***** ***************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP011037
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 452408 : 461437 8 Micromonas_pusilla_virus(16.67%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage