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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013004 Xanthomonas citri pv. malvacearum strain XcmH1005 chromosome, complete genome 5 crisprs DinG,cas3,WYL,DEDDh,csa3 0 4 10 0
NZ_CP013005 Xanthomonas citri pv. malvacearum strain XcmH1005 plasmid pXcmH, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP013004
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013004_1 41154-41452 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013004_2 353267-353349 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013004_3 2912565-2912659 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013004_4 4894104-4894288 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013004_5 5168674-5168749 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013004_5 5.1|5168699|26|NZ_CP013004|CRISPRCasFinder 5168699-5168724 26 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 281142-281167 4 0.846
NZ_CP013004_5 5.1|5168699|26|NZ_CP013004|CRISPRCasFinder 5168699-5168724 26 NC_016585 Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence 209772-209797 4 0.846
NZ_CP013004_1 1.5|41231|31|NZ_CP013004|CRISPRCasFinder 41231-41261 31 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 934481-934511 6 0.806
NZ_CP013004_1 1.7|41342|34|NZ_CP013004|CRISPRCasFinder 41342-41375 34 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1614842-1614875 6 0.824
NZ_CP013004_1 1.5|41231|31|NZ_CP013004|CRISPRCasFinder 41231-41261 31 NZ_CP015279 Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence 150331-150361 7 0.774
NZ_CP013004_1 1.5|41231|31|NZ_CP013004|CRISPRCasFinder 41231-41261 31 NZ_CP015280 Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence 81610-81640 7 0.774
NZ_CP013004_1 1.7|41342|34|NZ_CP013004|CRISPRCasFinder 41342-41375 34 MH271303 Microbacterium phage MementoMori, complete genome 20739-20772 8 0.765
NZ_CP013004_1 1.7|41342|34|NZ_CP013004|CRISPRCasFinder 41342-41375 34 MN813682 Microbacterium phage Matzah, complete genome 21015-21048 8 0.765
NZ_CP013004_1 1.7|41342|34|NZ_CP013004|CRISPRCasFinder 41342-41375 34 MK937591 Microbacterium phage Cinna, complete genome 21039-21072 8 0.765
NZ_CP013004_1 1.8|41399|31|NZ_CP013004|CRISPRCasFinder 41399-41429 31 NZ_CP050094 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence 380719-380749 8 0.742
NZ_CP013004_1 1.7|41342|34|NZ_CP013004|CRISPRCasFinder 41342-41375 34 NC_016588 Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence 72444-72477 11 0.676
NZ_CP013004_1 1.7|41342|34|NZ_CP013004|CRISPRCasFinder 41342-41375 34 NZ_AP012556 Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence 22147-22180 12 0.647
NZ_CP013004_1 1.7|41342|34|NZ_CP013004|CRISPRCasFinder 41342-41375 34 NZ_CP023152 Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence 116465-116498 12 0.647

1. spacer 5.1|5168699|26|NZ_CP013004|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 4, identity: 0.846

gccgatgtggcgtcggacgactcgcc	CRISPR spacer
gccgatgcggcgtcggacgacgcgaa	Protospacer
*******.************* **  

2. spacer 5.1|5168699|26|NZ_CP013004|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 4, identity: 0.846

gccgatgtggcgtcggacgactcgcc	CRISPR spacer
accgacgtggcgtcggacgcctcgac	Protospacer
.****.************* **** *

3. spacer 1.5|41231|31|NZ_CP013004|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.806

cgcatcggcgacaacgcgcgtaccg-gtggcg	CRISPR spacer
cgcagcggcgacaacgcgcgcaccatcttgc-	Protospacer
**** ***************.***.  * ** 

4. spacer 1.7|41342|34|NZ_CP013004|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

ctcgccgagcgcggcagccagatcagtggcggcg-	CRISPR spacer
ttcgtcgagcgcggcagccagatca-tggggctgg	Protospacer
.***.******************** *** * .* 

5. spacer 1.5|41231|31|NZ_CP013004|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

6. spacer 1.5|41231|31|NZ_CP013004|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

7. spacer 1.7|41342|34|NZ_CP013004|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * ** 

8. spacer 1.7|41342|34|NZ_CP013004|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * ** 

9. spacer 1.7|41342|34|NZ_CP013004|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * ** 

10. spacer 1.8|41399|31|NZ_CP013004|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 8, identity: 0.742

gggctggtgggaaccgagctcggcaagggca	CRISPR spacer
ctgctggtgggaatcgagttcggcaccgcaa	Protospacer
  ***********.****.******  *  *

11. spacer 1.7|41342|34|NZ_CP013004|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
ctcggcgagcgcggcggccagatcctcctccatc	Protospacer
**** **********.********  .  * .. 

12. spacer 1.7|41342|34|NZ_CP013004|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

13. spacer 1.7|41342|34|NZ_CP013004|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7531 : 36462 25 Leptospira_phage(50.0%) integrase,transposase,protease attL 1920:1933|attR 36841:36854
DBSCAN-SWA_2 909298 : 921068 11 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_3 1266594 : 1319212 40 Acinetobacter_phage(25.0%) integrase,transposase,tRNA attL 1299355:1299372|attR 1307137:1307154
DBSCAN-SWA_4 1482212 : 1563171 53 Serratia_phage(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_5 1851053 : 1899304 40 Streptomyces_phage(16.67%) protease,transposase,tRNA NA
DBSCAN-SWA_6 2484711 : 2545018 47 Planktothrix_phage(25.0%) transposase,integrase attL 2485189:2485213|attR 2520046:2520070
DBSCAN-SWA_7 2614096 : 2674176 43 Xanthomonas_phage(36.36%) coat,transposase NA
DBSCAN-SWA_8 2691705 : 2758071 45 Burkholderia_virus(42.86%) transposase,integrase attL 2736581:2736640|attR 2768121:2769572
DBSCAN-SWA_9 3134610 : 3145388 7 uncultured_Caudovirales_phage(16.67%) tRNA NA
DBSCAN-SWA_10 3573582 : 3640977 54 Tupanvirus(15.38%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013005
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 82689 63 Leptospira_phage(22.73%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage