CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013007	Xanthomonas citri pv. malvacearum strain XcmN1003 plasmid pXcmN, complete sequence	0 crisprs	NA	0	0	6	0
NZ_CP013006	Xanthomonas citri pv. malvacearum strain XcmN1003 chromosome, complete genome	5 crisprs	DinG,DEDDh,WYL,csa3,cas3	0	4	10	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4274

Burkholderia_virus(100.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089504605.1\|1235_2057_-	hypothetical protein	NA	NA	NA	NA
WP_089504418.1\|3055_4274_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.7e-98	67.0

DBSCAN-SWA_2

14904 : 15992

Leptospira_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087943923.1\|14904_15992_-\|transposase	IS3-like element ISXac2 family transposase	S5WIU1	Leptospira_phage	2.9e-43	36.8

DBSCAN-SWA_3

19868 : 25355

Enterobacteria_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005934469.1\|19868_20792_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.4e-38	50.8
WP_005934467.1\|20999_21239_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_005934465.1\|21238_21658_+	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_033836402.1\|21662_24638_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	2.0e-256	47.9
WP_033836401.1\|24656_25355_+	UPF0149 family protein	G9E3U3	Emiliania_huxleyi_virus	9.9e-05	74.1

DBSCAN-SWA_4

32480 : 34287

Brevibacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033837043.1\|32480_33248_+	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	2.6e-14	23.3
WP_003490721.1\|33261_34287_+	ParB/RepB/Spo0J family partition protein	A0A240F4U0	Ochrobactrum_phage	1.4e-07	31.2

DBSCAN-SWA_5

38295 : 39383

Leptospira_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089504397.1\|38295_39383_-\|transposase	IS3-like element ISXac2 family transposase	S5WIU1	Leptospira_phage	2.9e-43	36.8

DBSCAN-SWA_6

47527 : 48808

Aeromonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033836095.1\|47527_48091_+	recombinase family protein	A0A219Y9V9	Aeromonas_phage	1.0e-31	45.9
WP_033836096.1\|48157_48808_+	ParA family protein	B0ZSI1	Halomonas_phage	3.4e-15	32.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013006

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013006_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013006_1

42450-42748

Orphan

Consensus_repeat	Method
TGGAAACGGTCAACGGC	PILER-CR
TGGAAACGGTCAATGGCAGCATC	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP013006_1

>merge|NZ_CP013006|1|42450-42748|PILER-CR,CRISPRCasFinder
TGGAAACGGTCAACGGCTCCATCGAGATCGGTGCCGGTGCCCAAACCAAGAACGTGGAAACCGTCAACGGCGGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCGTGGAAACGGTCAACGGCTCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGCTGGAAACGGTCAATGGCAGCATCCTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCGTGGAAACGGTCAACGGCAGCATCGGGCTGGTGGGAACCGAGCTCGGCAAGGGCATCGAGACGGTCAATGGCGACATC

>NZ_CP013006|1|1|42450-42631|PILER-CR
TGGAAACGGTCAACGGC	TCCATCGAGATCGGTGCCGGTGCCCAAACCAAGAACG
TGGAAACCGTCAACGGC	GGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGC	TCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGC

>NZ_CP013006|1|1|42450-42748|CRISPRCasFinder
TGGAAACGGTCAACGGCTCCATC	GAGATCGGTGCCGGTGCCCAAACCAAGAACG
TGGAAACCGTCAACGGCGGCATC	CGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGCTCGATC	ACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGCAGCATC	CTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCG
TGGAAACGGTCAACGGCAGCATC	GGGCTGGTGGGAACCGAGCTCGGCAAGGGCA
TCGAGACGGTCAATGGCGACATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013006.1\|WP_005912478.1\|47780_48833_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP013006.1\|WP_125825465.1\|52233_52770_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_033836114.1\|55504_59977_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP013006.1\|WP_131830068.1\|52796_53879_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_033836110.1\|34291_35758_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271184
NZ_CP013006.1\|WP_078565843.1\|33818_34268_+\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|378053
NZ_CP013006.1\|WP_003482139.1\|50981_52040_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP013006.1\|WP_089504399.1\|31303_32391_-\|IS3-like-element-ISXac2-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP013006.1\|WP_003482171.1\|37888_38209_+\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|370154
NZ_CP013006.1\|WP_003482177.1\|37087_37780_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP013006.1\|WP_180324690.1\|40932_42231_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP013006.1\|WP_033836111.1\|39301_40828_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NZ_CP013006.1\|WP_078565841.1\|33332_33818_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131346
NZ_CP013006.1\|WP_005921837.1\|45270_45714_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_CP013006.1\|WP_078565759.1\|29211_30423_-\|Abi-family-protein	unknown	unknown	gnl\|CDD\|227160
NZ_CP013006.1\|WP_033836113.1\|43162_44959_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP013006.1\|WP_005912480.1\|49600_50674_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP013006.1\|WP_089504564.1\|26834_28054_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP013006.1\|WP_005912482.1\|53891_55373_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273553
NZ_CP013006.1\|WP_003482150.1\|46008_47142_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907

Protein	Function_ID	Function_description	E-value
NZ_CP013006.1\|WP_005912478.1\|47780_48833_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	5.33481e-60
NZ_CP013006.1\|WP_033836114.1\|55504_59977_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP013006.1\|WP_005912482.1\|53891_55373_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0
NZ_CP013006.1\|WP_033836110.1\|34291_35758_-\|site-specific-integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.97967e-54
NZ_CP013006.1\|WP_078565843.1\|33818_34268_+\|RES-family-NAD+-phosphorylase	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	1.08985e-17
NZ_CP013006.1\|WP_003482139.1\|50981_52040_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP013006.1\|WP_089504399.1\|31303_32391_-\|IS3-like-element-ISXac2-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.66335e-30
NZ_CP013006.1\|WP_003482171.1\|37888_38209_+\|DUF1820-family-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	1.29038e-51
NZ_CP013006.1\|WP_003482177.1\|37087_37780_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.19314e-25
NZ_CP013006.1\|WP_180324690.1\|40932_42231_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	5.78229e-94
NZ_CP013006.1\|WP_033836111.1\|39301_40828_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.08388e-127
NZ_CP013006.1\|WP_078565841.1\|33332_33818_+\|hypothetical-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	1.43905e-20
NZ_CP013006.1\|WP_005921837.1\|45270_45714_-\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	4.7072e-05
NZ_CP013006.1\|WP_078565759.1\|29211_30423_-\|Abi-family-protein	gnl\|CDD\|227160	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms].	8.64657e-64
NZ_CP013006.1\|WP_033836113.1\|43162_44959_+\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	3.03265e-122
NZ_CP013006.1\|WP_005912480.1\|49600_50674_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	3.38177e-59
NZ_CP013006.1\|WP_089504564.1\|26834_28054_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.7339e-123
NZ_CP013006.1\|WP_003482150.1\|46008_47142_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	1.3327e-58

>NZ_CP013006.1|WP_180324690.1|40932_42231_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MPPSPAPLPRLPLAPATGRGRMWLAVGVLACTLLGSMGASAQSQRETERKLQQLRDELKTISADRRELEGKRGTAAQQLRQADEKVAKTARALSETEAAMRAQEQHLSTLQQERAQLQRGLQNQRAQLAALLRAADQVGRNAPLKVLLSQDTVGDATRMLADHRYVQNARAQRIHALTTQLDALATVEQDIATRRQALDAARAQQKAQAATLQKDRSQQAATVAQLDDRYKQRAEREKAIGQDAKALEQLLANLRAAAAKAEAERRAAARRAAAEAAAQAKRSKTERSDRPGKTPPKVFANAPAPKVGGLSWPVAGNLLARFNATLPDGHTSKGVLIGAPKGTTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAHNDTLLRDAGATIKRGDAVAKVGSSGGQGVPALYFELRRNGQPVDPSSWLQRR
>NZ_CP013006.1|WP_033836111.1|39301_40828_-|PDZ-domain-containing-protein
MRVAVLSVALSLALFASPGWAQKAGPAAAQASADDPEANEAAVSKVPLDEIRRFVAVYNAVKQAYVDPVEDKKLMHAAVRGLLSDLDPHSTYFDKEDAEAFDEQATGAYDGIGVELLQQQDNTLKVIAPIDDTPAARAGIRAGDVIVAIDGKPIDASKAMEPLRGESGSKVLLTIMRDKTPKPFDVTLQRETIRVASVRSKLLEPGFGYIRISTFQADTGADFQKNLKQLQAGGKLRGLVLDLRSNPGGLLTSAVQVADDLLDKGNIVSTRGRISISDAKFDATPGDLLNGAPVVVLVDAGSASASEVLAGALRDNKRACIIGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQASGIVPDVLLTPEPQPGDADVPASLTDYSEATLPGHLRGDDEGEEGYSAGDVLPGDGPITEALAELKQPGAAAKAQAARKAKAQAAQKAKAANKTGAEPKPAAARPATTDKPRSAEPAGKAKPATTPPAPAEPVQPTTPTDKPAEPVN
>NZ_CP013006.1|WP_003482171.1|37888_38209_+|DUF1820-family-protein
MSKSLYKVTFLNHGKVYELYAREVTGSHLWGFNQIGELVFDVHDGLVVDPTEERLREEFGNTRTLHLPMQSIVRIEEVEKKGQSVIRDATTGDKVVTPFPSPIKPR
>NZ_CP013006.1|WP_003482177.1|37087_37780_+|rhomboid-family-intramembrane-serine-protease
MFVSLPSRKKPTPRWAVPLLFATVWLAYLWSISRPGEARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTPDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPAFGMVAWSAHIAGFVFGIVYGLYVRAAIARRLRKRHGF
>NZ_CP013006.1|WP_033836110.1|34291_35758_-|site-specific-integrase
MRIPHHLSRSPTGRWSFVQRVPIDLQTVMGCRLIKRTLQTKDLPQAHVRAVVLGAGYARLFAQLKDQRVTKLSKSDADLLIARLTSAENLQELTLNRTRQPDGTVTEQWQIDSPKDLKLYRQLMELEARAGATVQASRLPVAAFNSFGASHQAGPVRQASVPALETMTLGKARDAFLATLKGSALPKTYTIKKTAIESLVSFLGPKAKVHAITRSDLARWYQDMRDKGASTPTLTNKQSYIGGRGGFFEWAMASGYYPKGDNPASGHVSYSQREKRARKKLGFKAYDRAQIQALFAPEALGRLSESARWASLLGLYTGARASEVGQLLVRDVFEEDGIPCLRISDEGEHQKVKTEVSLRTVPLHPELLKMGFLEWVDGKRKAGETRLFPAAKATAVNGQGNWITKAFSRHLAEVGKGWAPAKRGFHSLRKTFIQELQGAGVVSELRAQIVGHELDDEHHATYSREFSIQEKLNGLGIHSPGLRVIIYF
>NZ_CP013006.1|WP_078565843.1|33818_34268_+|RES-family-NAD+-phosphorylase
MSEYWRISAHEGHKGIGGLHVSGRWHNVGKHIIYSAEHPALALVETMAHLDLSLDDVPTNLLLFKISVDTTLPIFKPNLPNGWQANQSMTRKLGDAWLKGGKEPLMAVPSAILPHTTNLIINPQHLAISSGGLVEISKEPIWIDPRFLR
>NZ_CP013006.1|WP_078565841.1|33332_33818_+|hypothetical-protein
MNAIYEDENLLKDDTDSTIFDVIQDLITTNEPRAAHQANYYSEADLVSLVALGFPTSAYETVADWLHLPKNAIGAETTIRNRIRNEKTLNSEESERVIRLLRVFTTAKNLYGSSEKAVEWMHKPRRFIPGKEAITPIELSALDVGARLVEEQLLRTTYGVY
>NZ_CP013006.1|WP_089504399.1|31303_32391_-|IS3-like-element-ISXac2-family-transposase
MKKSRFTDSQIIAVLKQAQAGAPVPELCREHGISSATFYKWRSKFGGMDVSMVARMKELEEENRRLKKMYAEAQLSTDLLKEALGKKMVRPSQRREMAQSAVTSGRTNIRHACQTFAVSQTCFRYQAKASEQNARIADWLVRLTTAHRDWGFGLCYLYLRNVKGFGWNHKRVYRIYRELELNLRIKPKKRLVRERPEPLAVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRLGIRVEHIQPGKPQQNAYVERYNRTIRYAWLARTLFDTVDQVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
>NZ_CP013006.1|WP_078565759.1|29211_30423_-|Abi-family-protein
MDRAELRRHLERLDAAVPALGASSLIASISSKPLPVSLPLEIQLLDKRLALSKAVPNTTHPSWQTTAYGWVFCWAKEGSEVSTYTRPHLTYERQLESLKARGLEVTDDDAALSYLRRLGYYRLSAYWYPFRKSTIVTVDGKFSRKVEDDFHEGASFQSAVELYVFDKRLRVLALDAIERIEVALRVDIAYGLGKRNTFAHCDPNELHGHFSKKRRGPQGRTDHEVWLEKLGETTARSKEDFVKHYKDTYGLPLPIWVAIEIWDFGLLSRFYGGMKPQDRSDLSERFGVKDSSIMETWLRAVNYIRNIAAHHGRLFNRNMIDYPEFPLKGEIQIFDSVLHNINKYRPYATFCVISYLMQAICPSTSWSRRFRDHLASFPKIAVPGCDIKSLGCHDEWMLEPFWQ
>NZ_CP013006.1|WP_089504564.1|26834_28054_-|IS3-family-transposase
MRKSPKFSPEVQERAVRMVLEHQGEHGSQWAAIESIAGKMGCTTETLRRWVRQAERDQGKRPGVTSQEQARIKVLERENRELRQANEILRKASAYFCPGGARPPVQAMTGFIDEHRARYGVEPICRVLPIAPSTYYTHAARQADPELQPNRWWRDRAMEAEVRRVWDENKQVYGVRKVWKQLCREGYRVARCTVARLMKRLGLRGVVRGKVVKTTHSDKAVPCPRDQVNRQFRADRPNALWVSDFTYVSTWAGFVYVAFVIDVYARRIVGWKVSGSARTDFVLDALEQALHARRPTRGGLIHHSDRGVQYVSIRYTERLAEAGIEPSVSSVGDSYDNALAETINGLYKAEVIHRRSWRNLQDVELATLEWVGWFNHKRLLGPIGDIPPAEAEANYYQQTREIAMAA
>NZ_CP013006.1|WP_033836113.1|43162_44959_+|M28-family-peptidase
MPRKILLCLAATLALAGCKREPADAPSAPAAQTPTDSAPSAPVSRHTFSPDMTTGDFAELVKTLASDDFEGRGPGTPGEEKTVTYIRDQMQRIGLQPGNGDSWFQEVPMVETTADASTAPSLRSGEQTRTLAFGTDIVVGTRTGQAEVKLDNSELVFVGYGVDAPEQQWNDYAGQEWKGKTVVMFVNDPGFHTDDAKLFDGKRMTYYGRWTYKFEEAARKGAAAALIVHDTPGASYGWDVVKNSWSGPQYDLPAKDDPDPRLPVQGWISAETARQLFANAGLDLTQAYKDASKRGFKPVPLKASWSVDLKSTIAAKTSRNVVGVLPGTSHADEAVLYMAHWDHLGKHPGERGDNIYNGAVDNATGVAGILEIADAFAHQVPKPTRSVVFLAVTLEESGLLGSKYYVANPSFPLDKIAAVINLDAMSVAGRARDVTVVGMGSSELEDILKPIAAMQGRTLHAEATPQSGSYFRSDHFNFAKAGVPALYADGGEDLREGGTAAGRAAAEDYGRHRYHAPGDEYDAATWKLDGTIEDLQVVYGVGKEVAAGERWPNWYPGNPFKAARDRMMAGRPGTSAASAQPADATSRATQTNMAKPPR
>NZ_CP013006.1|WP_005921837.1|45270_45714_-|PepSY-domain-containing-protein
MTQRLMKTALIGVLALVSQGALAQAADKPAKALTSGEVTSMLTAKGYTKVHDLKFEHGVWTADARSGDGKDVDVRIDPVTGRVYGDQTTSKLSEADVRAALSTGGYSDVHDLKFKDGLWKADAKRNGQKVELHVDPEDGHVVSVEND
>NZ_CP013006.1|WP_003482150.1|46008_47142_-|glycoside-hydrolase-family-5-protein
MSAVCFSLRALLRSTLLFIVFGSLPLAHAQTRALTYAGVNLSGAEFASSKKPGVLNKDYMYAAASDYTYFAGVGMNTIRLPILWERLQPTASGELDPAQLALLQQAVARAKAAGMYLVIDIHNYAKYYGYKIGSPEVPVATFTDLWRRLALAFNSDNAVMFGLMNEPNNISASEWAGAAQAAIDAIRRTGANNLILVPGALWTGAHSWYSTTNDGYSNATALTSIYDPLDRYAFEVHQYLDADSSGTSSTCVSSTIGAERLRNFTQWLRTNRKRGFLAEFGTANNAVCNQALQGMLAYMETNADVWLGWTWWAAGSWWNLSYAYSVHPNKDGTDKPQMAILSPQAALATRAPVAAAAARTSAASTSATSTSVARTAR
>NZ_CP013006.1|WP_005912478.1|47780_48833_-|glycoside-hydrolase-family-5-protein
MKSLTTRTRRPRCRALSLLLLALMPLAQAQSTSGLKYAGINLSGAEIKSSQKPGVLNIDYHYPAADEYAYFAGKHMNTVRLPILWERLQPKAGGELDPAQLALIRQAVANAKAANMYVIVDVHNYAKYYGHTIGSTKVPISTFNDLWRRLAIAFKSDNAVIFGLMNEPYDIDPQAWARAAQASIDTIRKTGANNLILVPGALWTGAHSWYSTVAGQSNAVAMASIRDPLNRYAIEAHQYLDADSSGTSGGCVSATIGVERLRSFTEWLRLNKKRGFLAEFGTGNTATCNLALNGMLGYMESNSDVWMGWSWWAAGAWWSGAYPFNVQPDAQGRDKPQMSILSPRARRITD
>NZ_CP013006.1|WP_005912480.1|49600_50674_-|glycoside-hydrolase-family-5-protein
MFRTPPHFPRLRIAALALTLLAAGPLVQAKEPPGPRRETAGLKYVGVNLSGAEFNSRKKPGTLFKDYTYPAASDFSYFAGKGMNTIRLPFLWERVQPELNGPLDQAQLGLIKKSLEAAKANKQSLILDLHNYATYNGKRIGTSDVPAGALADLWRRLALEFKDDKAVIFGLMNEPNGISAPDWANAAQGTINAIRKTGAKNLILVPGTAYTGAHSWRSTSYGVSNAKALEILKDPGNNLAFEAHQYLDKDYSGTKPVCTSDSVGQEKLQGFTSWLRENKQKGFLGEFATANNPVCDKALEGMLTYMEKNSDVWLGWTWWAAGAWWKPDYPFNVQPGKDGSDKPQMAILSKYARRAGK
>NZ_CP013006.1|WP_003482139.1|50981_52040_+|NAD(P)-dependent-alcohol-dehydrogenase
MSTAHAYAAQAADQPLAPFVFERRAPGPNDVQIDIAYCGVCHSDLHTARNEWHNTLYPSVPGHEIVGRVTAVGNAVTGFKVGDLAGVGCMVDSCRSCASCQEGEEQYCEAGFTGTYNGPMFGGGENTYGGYSDHIVVDQKYVLRITHSDNLAAVAPLLCAGITTYSPLAHWKVGPGQKVGVVGLGGLGHMAVKIAKAMGATVVLFTTSESKRADALRLGASEVVISKDEAQMAAQYNTLDFILNTVAAPHNLDPFLNALKRDGAMVLVGVPEQSHPSPAVFNLVMKRRTLAGSLIGGIRQTQEMLDFCAKHNIVSDIETIRADQINEAYERMLKSDVKYRFVIDMATLDKAA
>NZ_CP013006.1|WP_125825465.1|52233_52770_+|hypothetical-protein
MRQIDLEEVAPSLGSLTEEWGRAICQAAAHCMTERSHASGVELCSDGMGSPNFAVHWAPFKDAAKVEATWSDLQVAVEHGAYAIALATIDVEYGLKVVARSAKGTGFDFWVRDPAKPGILMQGAERVEVSGILSGTKSDVSGRLSEKIKQMNQSSYMGLPGHAVVVEFGRPLVKAAKT
>NZ_CP013006.1|WP_131830068.1|52796_53879_+|hypothetical-protein
MRLYEQALSLRAQGDFSSFQENAVLALQQEKRAAYEYEKLSGDEPTRSVLFRSAATIAIEAGKYEEALELAGAGLARRGPIVSELVSLVKDAEFRRNLRANNQRISDETLRLSLDGCAVGFGFVPYQKFQHRIDALSKMIRRTFDRLDGVHFSDSVRSKETVKVFLGAPMAGSFAVDVRVGELQQTNFPWATGRVQTAEVLTEIVKGMRAFEDGNLSGLNNLIEDESYRRNFAELGRQIIPDGSDVTVVTLESNTRLHKRDVVRLKVSRKAMHTHTKINLQNLSKNAEIVGVLRGARQPDDDSSFVEVLDEEGKFHKIRVAEELMADIVRPLWDKRVIASIFKKGSHWELEHMAPAESAD
>NZ_CP013006.1|WP_005912482.1|53891_55373_-|FAD-dependent-oxidoreductase
MSRKQAFQFLDLPRTMPTRIPVELRTSGDWGELYGRFDKADAQYQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQEDRIIEAAALCHSTNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTAFKMGWRPDLGNVQPSGHRVAVIGAGPAGLACADRLARAGIEAVVYDRYEQIGGLLQFGIPSFKLDKSVIGKRREILEGMGVQFRLGVEVGRDISIEQLLGEYDAVFLGTGAYRYTDGGLPGQDLKNVLPALPFLVQNSRIVSGNDPHGRPIAGWEDQLALPDLTGKRVVVLGGGDTGMDCVRSAIRLGAAKVTCAYRRDEASMPGSAREVANAREEGVRFLFNRQPLSIESGADDEAIGVTVVETKLGEPDASGRRNAVPVESSESLLEADVVIIAFGFSPTLPDWLASQGVDAGSNGRIVAPSDGNGRLPYQTSNPRLFAGGDCVRGADLVVTAVAEGRDAAGSIVQLLGVKAQVKEPAAA
>NZ_CP013006.1|WP_033836114.1|55504_59977_-|glutamate-synthase-large-subunit
MAPRTRQGLNDDGLYNSVRDERDACGFGMVAQLDDQPSRALVDTAIAALSRMTHRGGVAADGLTGDGCGLLIRKPDAFLRGLARDAGITLGTRYAAGVVFLPLDEADAARCRAELEAQLHSAGVHFRGWRVVPTDDSVCGQLARDTLPRIEQVFVDAGAEQTEDGFTLALFLARRRAEQALHAVEHFYVTTLSPNGISYKGMVLPDKLSTFYPDLQRSDMSSSAIVFHQRFSTNTLPRWPLAHPFRLLAHNGEINTIEGNRRWAQARSKVWQTPRFDIAQFDPVISMHGSDSQSLDNMLELLIAGGMDLLQALRILVPPATQSLEFKDADLAAFYEFYGLNTEPWDGPAGIVACDSRYAACMLDRNGLRPARWMLTSDRHFLVASEAGVWELPAERITRKGKLGPGEMMAIDLKRGDLLDSDAIDRINRARAPYKQWLQQGVTYLQTELIDPSLVEEPFSEQTLRSYHKLFQLSTEEVEQVLRPLAETEQEATGSMGDDTPMAVLSRQTRPLYDYFRQAFAQVTNPPIDPLREGIAMSLTTQLGKETNIFHAAAETVNHVILNSPVLSQRKLRQLLKMEQYVERNRLIDLSYSLEEGLKAGLERICQEVEAAARAGAVMLLLSDRYPVPDRPMAHALLATGAVHHHLCKVGLRCDVNLIIETGTARDPHHMACLLGVGATAVYPYLAYQTLFDLGRRGILQLSKGGEQSQIGRRYRKGIYKGLSKIISKMGICTIASYRGAQLFEIVGLDPDVVDLCFADTPARIGGVDLARLDTEARELTVRAWNDQLKPEVGGLLKYVHGGEYHMYNPDVVMTLQRATRTGDAGDWQKYVAAVHARPASTLRDLVQLKRADTPTPLDDVAPAEDVLRRFDSAAISLGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGTEKRSKIKQVASGRFGVTPEYLVNAEVLQIKVAQGAKPGEGGQLPGHKVNELIARLRYAKPGIGLISPPPHHDIYSIEDLAQLIYDLKQVNPTALVSVKLVAHAGVGTIAAGVVKAGADLITVSGHDGGTGASPVSSIRYAGVPWELGVAESHQALVANDLRERTILQTDGGLKTGLDVVKAALLGADSFGFGTAPMIVLGCKYLRICHLNNCATGVATQDERLRAGYFTGLPERVEHFFRLLAEEVRQWLSYLGVRSLDEIVGRTDLLEQLDVSPRPGVKVDLSRLLTHAQYDGSHCAAQRLYESPDSLATQMDGLLADAIANKRGGDHRFLIHNTDRSIGARLSGAIARVHGNHGMSDAPLNLRFRGTAGQSFGAFNAGGLQLELEGEANDYVGKGMAGGRLVVRPPRGARFEARSTPIVGNTCLYGATGGELFAAGRAGERFAVRNSGALAVVEGAGDHCCEYMTDGVVLVLGKVGLNFGAGFTGGLAYVLDIERDFVDRYNHELIDIHRVSAEGFENHRQHLHTLISRHRELTGSIWAQQILDEFRDYIGKFWLVKPKAASIESLTESLRRAA

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Crispr_ID: NZ_CP013006_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013006_2

313125-313207

Orphan

Consensus_repeat	Method
GGTCTCCAACAGCGGCACCATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013006_2

>merge|NZ_CP013006|2|313125-313207|CRISPRCasFinder
GGTCTCCAACAGCGGCACCATCAATGCGGCGGCCGGATCGGCCACGCTGATCGGCGGCCGGGTCGCCAACAGCGGCACCATCA

>NZ_CP013006|2|2|313125-313207|CRISPRCasFinder
GGTCTCCAACAGCGGCACCATCA	ATGCGGCGGCCGGATCGGCCACGCTGATCGGCGGCCG
GGTCGCCAACAGCGGCACCATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013006.1\|WP_005922147.1\|297439_298756_+\|type-VI-secretion-system-associated-FHA-domain-protein-TagH	unknown	unknown	gnl\|CDD\|274537
NZ_CP013006.1\|WP_033479658.1\|333927_335277_-\|tryptophan-7-halogenase	unknown	unknown	gnl\|CDD\|380163
NZ_CP013006.1\|WP_005917774.1\|305460_306036_+\|type-VI-secretion-system-associated-protein-TagF	unknown	unknown	gnl\|CDD\|132416
NZ_CP013006.1\|WP_033836932.1\|326930_327647_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_005914773.1\|321139_321430_-\|DUF2782-domain-containing-protein	unknown	unknown	gnl\|CDD\|378588
NZ_CP013006.1\|WP_033836934.1\|310463_310925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_003487378.1\|325181_326081_-\|oxygen-dependent-coproporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|235413
NZ_CP013006.1\|WP_033836935.1\|306753_310467_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP013006.1\|WP_033479656.1\|299335_300670_+\|type-VI-secretion-system-baseplate-subunit-TssK	unknown	unknown	gnl\|CDD\|274536
NZ_CP013006.1\|WP_033836936.1\|300651_301932_+\|type-VI-secretion-system-protein-TssL	unknown	unknown	gnl\|CDD\|180801
NZ_CP013006.1\|WP_005917770.1\|306032_306749_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP013006.1\|WP_005914777.1\|326364_326934_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_003487396.1\|332923_333931_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275237
NZ_CP013006.1\|WP_005917764.1\|310921_312598_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP013006.1\|WP_003487349.1\|296604_297153_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_033836930.1\|330987_332331_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|223442
NZ_CP013006.1\|WP_005914772.1\|319786_320830_+\|type-VI-secretion-system-protein-TssA	unknown	unknown	gnl\|CDD\|274544
NZ_CP013006.1\|WP_005917216.1\|294640_296608_+\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NZ_CP013006.1\|WP_005914775.1\|321506_324311_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP013006.1\|WP_033836931.1\|328040_330410_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423

Protein	Function_ID	Function_description	E-value
NZ_CP013006.1\|WP_005922147.1\|297439_298756_+\|type-VI-secretion-system-associated-FHA-domain-protein-TagH	gnl\|CDD\|274537	TIGR03354, VI_FHA, type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.34361e-116
NZ_CP013006.1\|WP_033479658.1\|333927_335277_-\|tryptophan-7-halogenase	gnl\|CDD\|380163	NF033113, halo_ClmS, chloramphenicol-biosynthetic FADH2-dependent halogenase CmlS.	7.15042e-53
NZ_CP013006.1\|WP_005917774.1\|305460_306036_+\|type-VI-secretion-system-associated-protein-TagF	gnl\|CDD\|132416	TIGR03373, VI_minor_4, type VI secretion-associated protein, BMA_A0400 family. Members of this protein family are found exclusively, although not universally, in bacterial species that possess a type VI secretion system. Genes are found in type VI secretion-associated gene clusters. The specific function is unknown. This model represents the rather well-conserved amino-terminal domain of a protein family in which carboxy-terminal regions, when present, show little conservation. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.13726e-43
NZ_CP013006.1\|WP_005914773.1\|321139_321430_-\|DUF2782-domain-containing-protein	gnl\|CDD\|378588	pfam11191, DUF2782, Protein of unknown function (DUF2782). This is a bacterial family of proteins whose function is unknown.	1.25264e-16
NZ_CP013006.1\|WP_003487378.1\|325181_326081_-\|oxygen-dependent-coproporphyrinogen-oxidase	gnl\|CDD\|235413	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase.	0
NZ_CP013006.1\|WP_033836935.1\|306753_310467_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.02162e-68
NZ_CP013006.1\|WP_033479656.1\|299335_300670_+\|type-VI-secretion-system-baseplate-subunit-TssK	gnl\|CDD\|274536	TIGR03353, VI_chp_4, type VI secretion protein, VC_A0114 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP013006.1\|WP_033836936.1\|300651_301932_+\|type-VI-secretion-system-protein-TssL	gnl\|CDD\|180801	PRK07033, PRK07033, DotU family type VI secretion system protein.	9.7853e-115
NZ_CP013006.1\|WP_005917770.1\|306032_306749_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	4.66294e-48
NZ_CP013006.1\|WP_005917764.1\|310921_312598_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	6.22902e-63
NZ_CP013006.1\|WP_003487396.1\|332923_333931_-\|hypothetical-protein	gnl\|CDD\|275237	TIGR04444, hypothetical_protein_ThecoDRAFT_3161, chorismatase, FkbO/Hyg5 family. Members of this include two chemically distinct enzymes that cleave pyruvate from chorismate. FkbO and RapK convert chorismate to pyruvate plus (4R,5R)-4,5-dihydroxycyclohexa-1,5-dienecarboxylic acid (DCDC). HygB and Bra8 convert chorismate to pyruvate, water, and 3-hydroxybenzoate. These two enzymes are closely related, and lack homology to chorismate lyase, EC 4.1.3.40, which converts chorismate to pyruvate plus 4-hydroxybenzoate.	2.46583e-64
NZ_CP013006.1\|WP_033836930.1\|330987_332331_+\|AMP-binding-protein	gnl\|CDD\|223442	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism].	3.16134e-44
NZ_CP013006.1\|WP_005914772.1\|319786_320830_+\|type-VI-secretion-system-protein-TssA	gnl\|CDD\|274544	TIGR03363, VI_chp_8, type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).	4.39109e-101
NZ_CP013006.1\|WP_005917216.1\|294640_296608_+\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	0
NZ_CP013006.1\|WP_005914775.1\|321506_324311_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP013006.1\|WP_033836931.1\|328040_330410_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.06088e-78

>NZ_CP013006.1|WP_005917764.1|310921_312598_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MTCLAAAVSACLQLAAPAWAQSPTDATAAAQSAAAVPAMKDRTDAVTLQVRGFRVRDVGHYPEAGIDPPRMQAVADAAFAELAQGQPVVALRFDQLQAVADAITRAYRQAGFIVSTAYLPAQTPGPDQLIEIRVLEGRIGQISVQGAARYRGNALSAPLRQLQGRPLRKQDVDAALLYARDLPGVSVSSVLQPGQKEGETDVVLVASEAARPYVIALGGNNYGTELTGRYRAQAGITWNSPLGLGDVFAANYAYSLAPQQSQIGALSYGLPIGSVSGLSAVIGASRSELEVRNGVFARLGLKGPTSIVYTGADWKFINSQTLQLQGSARYLREQSKLSALGMQLSDQQFDVAELGLSLRRTDLRWRGVDLLQVSVRQSLRDRSAPVDQISPGRDSYFTIARLAYTRLQYLTRTQRLYFKFNGQYSDDTLTPMEQFAVGGPDSVRAYPVSDALGDRGYYTALEYHMDAPGFADAASPFNGRPWRELLELDVFADHARVFAANGRLTPASFDAAGVGLTFRLPQYANFEWRISAALPTGARNASDGRDDARIYTRFGFTF
>NZ_CP013006.1|WP_033836934.1|310463_310925_+|hypothetical-protein
MSATPPSPTAAAAHPANAQLQALALAHQQGQLDREQYRARRRRVLDAARQTQGVTLRNALPSSSDARTRPLSGYRVTRKLRSQVVAVFVIVMTVAIILLTLHKCTSGFDRRSASGEVRHATRCAVATVAPVYAAGHVGHAQQRMVSGEMDVCV
>NZ_CP013006.1|WP_033836935.1|306753_310467_+|protein-kinase
MHEDTATVTELVTAMRRGALDLNAVLAALGRRAAVPEAEYRAGVETLWTLQRQHLLDDATVTTLVSRLDALRDRAPAIAPAPAPSAAQEPTPTPTVVDDDATVVMPRPGPARMAENDITRVQPAQLVSGDAPSLTSLGLATHPNLGTQTGTGTGTGTGTAGNASVSSWQHLAEAAGGDHAGVGSLLNGRFQLERELGRGGMGVVYLARDERKVEARDRDPWLAVKVLSDEFRRHPDALVALQREARRSQKLAHDNIVRVYDFDKDRTLVFMTMEYIDGCDLKTLIREQAYNGMPLKQAWPLIDGMGRALMRAHAAGIVHSDFKPGNVMVTRDGVAKVFDFGIARAGKHAAEVAGEQTVFDAATLGALTPAYASLEMIRGQAPTPADDLYALGCVCFELLTGKHTFDKLSAEVALREGRRPRPVPGLTRRQYATLCAAVAFPAAQRLTRVDQLLDGLRQVPLRERALPLIGYGATALALVGVGGWGASRYLHQRHLDEVIARFGAQDPQHYRDETQAMQALSSLSADDRRRVLMDRSDLIEDFLLRRLDALWNPANGRDDYRGALQVFALRDRLRLYSPALDARRQAIEREKNQRLNALDTTLNRQLDAGLLFRTQPDNALATLDQVRRIDPGSSLLRHSALEVRLDAAIAEAVAAGQLTTARTEVEQARAAFPDSLRLQLRSAEVGVAEQQVRRTPVAATARDADSARTALAADLANPSTDPAWRARIDAELAALPAAERSSQGNALAEAISTAVAVQSDPAQLAGAQALVDFGLGLAPRSASLLAQRMRLQTLEHQFEQALARESAEAELAARIESLRRAAAANDLGKTRDALARIRTLQPGHPLLRSEGPQLLSQVYRNAAGDAFAQGRYAQAVDLLRQGLQTLGQRAELRSAQTRYAVAAAVMTAGALPPSERQQLAGRLQTLYRTDATALAQLEAQMKAAGQLPEGSLSARLQRAPAADAPADDSVPPGSATGTATPAVGAKPARDKSAARPAAATPTTARDPATAAALPANVDDADSLPPVPTGPDPCAGLAGRGAACFDTLGQTRAPMLVVIPAIAGGKPYALSRGEVAVADFNLFCQATGRCTAQAAATPELARAPVRNISLTLAQAYLRWLTIGSGGWRYRLPSDAEWLHAAQAGSNWRQAEDSNCVPPNASAGDAARAPVSARGRDANPWGLINLTGNVWEWVSTGTGVQARGGSFSSYWSDCTVQASRADNGSAQPDVGLRVLRELP
>NZ_CP013006.1|WP_005917770.1|306032_306749_+|serine/threonine-protein-phosphatase
MNAPYQSAGHTETGKVRRLNEDALLLREDAGLWVVADGLGGHSAGDYASQLLVQRLRALVRPADLCDFLDAIDDTLAQINRELLQVARERRVEMIATTVVVLVHDPDFMLCGWVGDSRIYAQHGGPLRQLTRDHVHGVREDITQFGGAQASAAAAGVLTRAVGAQEPLFVDWVLTPSLPGTQFLLCSDGINKEIPDPELDAECHRFGDPRALLARLFELAMGRAARDNVTAVVVRLQE
>NZ_CP013006.1|WP_005917774.1|305460_306036_+|type-VI-secretion-system-associated-protein-TagF
MSMSAHEPLGFHGKLPGVGDFVQRRLPASFVQPWDLHFANCLDTVRQPLGQHWPGAYRNSGLRAFALGPGVCGAQAWAGMLGPGEDRVGRCFPLTVAMPLPHMCLPPAAWFGAVAACLGRSLRARTDAAGFDAALLALGVPAAPSSTYAPVHGESWWWRLGAAAQAMHGLPTAETYLDWLLAEQDITEVTR
>NZ_CP013006.1|WP_033836936.1|300651_301932_+|type-VI-secretion-system-protein-TssL
MGDPELSMSRPVADLAPAYAAPLPAAEGTGVPSEDTDISELLGRSVNPLVQAATPLLLLAVQLRHSAQSPDVARLREQVMAQVRRFEHRARDGGAPVEAVTAARYVLCALLDEAVLNAPWGERSGWSQKTLLVIFHSESYGGAKFFQILERLCADMPRHLDLIELMYLCLALGFVGRYQIEAGGIATLAAIQEDVYRRIRAARGPAPDSLAPRWRGVEDRRRLGRYLPVWAAALLGLSLVVVAFVWLQACLNSLSAPISAQAAQWGIAPATPPDAAPVPPPPVRLKQLLSAQERAGLLRVDEQADGQTRVRLSSAAMFASGGVEVELQQRGLIAQIAAAIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVEAIGAGDSQPIAQPVQLPTNRARNRRVEILFQPGE
>NZ_CP013006.1|WP_033479656.1|299335_300670_+|type-VI-secretion-system-baseplate-subunit-TssK
MQNNKVVWSEGLFLRPQHLQQQERYLERYVDLRAARLRPHAWGVSELEWETDLLAVGKLGLRRARGVFADGTPFAMPGDDPLPVALEVEPNCRDQIVYLTVPLRVPAQPELGRPESPADQLFRYRVRETESNDASGSTSEAVLMEVGGLSTRLLPHSQPLEGLDRIAVARIIETRADRQVVLDPHFIPSAMVCQAAPRLTTFLTELLGLLHQRGEALASRVTLTDRGGAADIADFLLLQLVNRWQPQMAHWAAAPLAHPEELFRALVALAGELSTFTAAGKRPPAWPAYRHQSQQDSFEPVIGALRSSLSAVLEQTATPLPIQARKFGVWVAMVPDPGLLDSAAFVLAAKADMPSEELRRQLPAHAKIGPVEQIRDLVNLQLPGIVATPMPVAPRQIPYHAGYLYFEFDKSAALWRTLKASGGIAFHFGSEFAGLDLQLWAIRS
>NZ_CP013006.1|WP_005922147.1|297439_298756_+|type-VI-secretion-system-associated-FHA-domain-protein-TagH
MSSSQLILTVSGAQAAQFGASAQKRFAGTGGSIGRSDESDWVLAAPGVSRTHAVVRFLNGMYFIEDRSTNGMSLNGTALTRADPSALSDGDRLQLDSFEIHVQVQSLAAAPTPAPAFDPLPDAMDDRTQVAPPPSTRRAPSATACLDLLEFGTPPPARPAVDALLDDLLLSGAPGELDPLRLLDPSPAPTRDASPSAWNQSNASHDHFRPPASPDARATLPENWDMTLGDFAPPAPLPALAPMAAPVASPFAPPAAVSVATAPSAATAVPPELDRIFAIVVDGVMDVLRARAEIKNTFRLPVTVIQRSENNPLKFAATAEDALQKLLAPPSASFLSGVPAFEDAFDDIRCHQMAMLAGMRAAFDAMLFHFSPDRLEQEADAGGKRLGFGGKGRYWERYRDNFEQLRSDPDDCFRRLFGDEFARAYEAQLARLKSARRH
>NZ_CP013006.1|WP_003487349.1|296604_297153_+|hypothetical-protein
MSAPTLSLAQACAQMQLSAPACAQLSTPIAPQAAVGALLASGHGEDAIKLLARLLPKRYAVAWLCQCVRGETLDEEDRAGAALAEKWVREPSEAHRRAAQAFAHAGGYVSLGAWLAAAVAWSGGSLAPPHQTTPVPPADHLTARAVAAAITLLAAREPAQLEARRSGYAAHAMELLTSVGAP
>NZ_CP013006.1|WP_005917216.1|294640_296608_+|type-VI-secretion-system-tip-protein-VgrG
MPRTITLHSDLGERLLLHRMQASEALGQLFDYRIDALCTELQPNLRDLLGTPVAVQLADGEGEQRWYHGMVASCAHNGYAVVDALEYAVLELQVVPKPWLLTQRRDCRIYQDMSVPEIVTSVLGEIGYGDVQQQLSAQYAKRTYCVQYREDDFSFISRLLEREGIYYYFTHSRSAHTLVLADALGAHAAQNGVDSLPYAPPGTDDRRLMRSVVSHWRSARGVHCSQHGSTDYDPLQPRASLAAEADASGEQLHTVDGLIAFDYPGAHTVQTDGNRYMQVRSEAHNVQRASHAATTNACGLMVGALFRLRGFPRAELNQEYLVLSAHTTLAAPEHASGEPPFSSSVQVMESRLPFRSLQRTATPTIAGLQTAMVTGDTDEDIAVDAHGRVQVTFHWATAARPHAALSCWVRVASMWAGKGWGAMSLPRVGQEVVVSFLEGDPDRPLIVGSVYNGDHAPPFSLPDNKTQSGVRSRSLLGGTADFNELRFEDKAGAEELYLRAQRDLREEVQHDHTSTIDNDRVLTVKHDRSARIDNNDSVDVGKKLLLKAGEEIELVTGSARLVMKQNGEIVLSGIKILVDASSEAKITSTAIKLLANAQLQAKSPATEVAGDATLKLTSGGMLSAEAGASATLKGPLVSIKADALVQVGGGLIMIG
>NZ_CP013006.1|WP_005914772.1|319786_320830_+|type-VI-secretion-system-protein-TssA
MQDDSSLETLLAPLGDDAPAGPDLEYDPEFLRLERESAVRAERALGESVIAAEEPDWDKVQALALDLCRRSRDLRVAGRLGAAWLRLRGLPGWADALALIHGLLERHWDSVHPQLDADDDNDPTSRINALVGLSDPMGLLGALRATAFVQSPRLGRFSLRDLRVANGSIKLPDGQSGPSLAEIEACCQDCTPETLATSAHAITEALRQARAIDALLSERVGTAAPDLRPLLTDLRDLERFVLPHWQARQGISAIAEDGEQTAGEGHAVASATNATRRNDEIAGPDDVKRRLEEICAYYARHEPSSPVPMLLRRAQRLVGADFLALMKELAPAGIDELQRVTGPLEDS
>NZ_CP013006.1|WP_005914773.1|321139_321430_-|DUF2782-domain-containing-protein
MNKARLLLLPFLLLGGCATSGGDRAGGDIPAGADVTSKTMGNGDKVDEYRVNGQLEMVRVTPARGAPYFLYDRDHDGHTDAEKDKVNKVYWQLYSW
>NZ_CP013006.1|WP_005914775.1|321506_324311_+|DNA-polymerase-I
MSRLVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKERPAYIAFVVDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPEQIVDLLALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRTLVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPVALGAAAATARTEPGRARGTGFVSGPVNAAVDLDPSLSTPGQYGTILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAAELRVPLVVDSGVGDNWDQAH
>NZ_CP013006.1|WP_003487378.1|325181_326081_-|oxygen-dependent-coproporphyrinogen-oxidase
MNEFDRVRDYLTDLQDRICAAVEAADGKARFAEDLWKREEGGGGRTRILRDGAVFEQAGIGFSDVSGTRLPPSASAHRPELAGATWRACGVSLVFHPHNPYIPTTHMNVRYFRAERDGEVVAAWFGGGFDLTPFYPFDEDVQHWHRVAQALCVPFGQERYAAHKRWCDEYFFLRHRNETRGVGGLFFDDLGQDFERDFAYQRAVGDGFLDAYIPIVQRRKDTPYGEREREFQLYRRGRYVEFNLVYDRGTLFGLQSGGRAESILMSLPPRVRWEYGFTPEPGSAEARLADYLIPRDWLG
>NZ_CP013006.1|WP_005914777.1|326364_326934_-|hypothetical-protein
MSAVQPASARQRGGFVTPLAWVSLLLGVVGVLANLVQIAMIALTPGAASLGLPEGITLPHSWQWLIDHALSLSVAGVLLSAAFCWLSWALLQRREWARLGFVAVLLVTGVLNFGGLALIGPLFDGVQMLLPADVLQSPEWPQMRARLQATQQMALVLTGLGALAIGCVHAVLAWRLCTPAVRAEFSQPE
>NZ_CP013006.1|WP_033836932.1|326930_327647_-|hypothetical-protein
MGLWDRLFGRKSTAANTPRTAPTAAPVAAADASEAGAEIDPALQPALSAFQRGDHVGAYNAAQTQLHLGADAQRLCALSLSALDRYREAYPYWLALYELEPSAHNALQLATTSVMCNEIAQGEQWLLIFDDLNTQERSTSPATARTSFLTALTRAGHGAHALPHLEWLREAYAGMSITDSHFLYVRGLPFLEAFLERSTPLLRQCLPADAVPEWYAQLQPALDPPGQAMVAAHIASLQ
>NZ_CP013006.1|WP_033836931.1|328040_330410_-|S9-family-peptidase
MPRFLPLTLLLLATAAHAQSAAPLTIEQAMADPDWIGPSVDQAWWQWDGKQVQYLLKRDGSPVRDTYRQGTGGGAAERVADTARAGLDAANPSYDATRQRMLFARNGDIFLRDLRTGALTQLTRSNEIESRPQFASDGGAIWRAGNNWYHWRADGGTAQVAVVKAERDPNAAPKADVLREQQLATLATLRRDKEQRDALRTQEDAWRRADATRAAAPVYLGDEVEIVDSALSPDGRHLLVVTQAKSADEGQAGKMPKYVTESGYEEFQEVRTRVGRNAPAAHALWLVDVGAGTARSLSFDPLPGIATDPLAALRKAAKRDPLKGNRAVRVESDGDGSGPAVHWSDDGRNVAVEIRAVDNKDRWIASVDLDNARLQPRHRLSDSAWINWDFNDFGWLPDNRTLWLLSEESGYSQLYTVEGNGKPRQRTRGKWEVSMPVPSADGSGMFFLCNQKWPGDYEVCKLDLRNDQLTEITALNGVEGYSLSPNGQQLLVRYSGSYLPTQLAVVPAAGGQATVLTDTRTPAFKAQPWIAPQYVQVPSKHGAGTVWGKYYGPKTPEPGKHYPIVMFVHGAGYLQNVSERYTPYFREQMFHNLLVQQGYIVLDLDYRASEGYGRDWRTAIYRNMGHPELEDYLDGLDWLVATKQGDRARVGIYGGSYGGFMTYMALFRSPGTFKAGAALRPVGDWMQYNHEYTSNILNTPELDPEAYKTSSPINYAEGLRDHLLIAHGMIDDNVFFKDSVDMTQKLMELHKDNWQVAPYPLERHGFTRADSWLDEYKRILKLFNEQVKP
>NZ_CP013006.1|WP_033836930.1|330987_332331_+|AMP-binding-protein
MSSLPAPAVSHPMAVGAPDRPLAWRAGQSVDLATFIAHVHGLARQLPAGSHAVNLCEDRYRFMVAFYACALRGQVSLLPSSRAPAVVGEVQARYADTYCLGDLTLELAPPRYWQLPAELPQAQGPIPQLADDALVAIGFTSGSTGSPQPNPKTWGSFLTSTRQDLVALQSLWTHADAVPHVVATVPPQHMYGMEFSVLLPMVTTLAVHAGRPFFPDDVARALADIPAPRVLVTTPVHLRALVESGVALPPLAGIVSATAPLAPEIAAAAEARFGGEVREMFGSTETCVFAVRRTALEAAWTPLPGVRLETQAAGTLVHAPHLATPVLLADMMDVADDGRFQVRGRQADLLEIAGKRASLADLTRRLLAIPGVIDGTIVQLAPDPGQAVGRIAALVVAPTLDEAQVLAALRVSVDPVFLPRRLRKLAALPRNETGKLPRDVVLGLLNG
>NZ_CP013006.1|WP_003487396.1|332923_333931_-|hypothetical-protein
MTASQAQTTHAVRHPRLQVDYVDQTDPAVLLTDPQVLAVFGFGDAAPRLHDPRYLRVPLQPYQASVLEVWRTDAPVSSGRDGNIAWSSDGHLQFGVIEIDEQDVDIEEAAARAYAEITAFVSNSQTPRLLRIWNYLDAITLGSGDRERYRQFCVGRARGLGAFDTAQLPAATAVGRCDAERIIQIYWLAAANAGTPLENPRQVSAYHYPRQYGPQSPSFARAMLPPAGSDMPLLLSGTAAVVGHASMHTGQLLAQLEETFANFDALLGAARQQAPALPAQFGAGTRLKVYVREREDLPRVAQALDARFGDAVPRLLLHAVICRDELAVEIDGAHG
>NZ_CP013006.1|WP_033479658.1|333927_335277_-|tryptophan-7-halogenase
MPAAGPAPGPECPDVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLGVLEDVRAIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDHVLFQRARAVGVDAREQVCVEQVAFDGEHPVLQARTADGGVQQFRPRYLLDASGRDTFLGNRLKLKRANATHQSAALFSHFRGVTRRPGEDAGNISIYRHAHGWMWLIPLPEDIMSVGAVCYPDYMKTRQGDSEGFLMRTLALNAELSARMLGAERVAPVHATGNYAYECTRMAGPRWLMLGDAYTFVDPMFSSGVFLAMHGAERGAAMVDAALRAPQSEAKLQRALQRELTRGVEEFKWFIYRFTSPTMRALFAQPQNTWQVEQAVVAMLAGDVFDAPKVRIRLRAFRALYALTALSMMPRAWQSWRHRRRQAKLGFDGDTLQRDTQQRDAP

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Crispr_ID: NZ_CP013006_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013006_3

2187203-2187297

Orphan

Consensus_repeat	Method
GGGTCGGCATCCATTTCTGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013006_3

>merge|NZ_CP013006|3|2187203-2187297|CRISPRCasFinder
GGGTCGGCATCCATTTCTGCCAGCAGATCTGCGGTGATCAGGTCCACTGCGGTGGGTGCGGCTCCGAACGCCGGGTCGGCATCCATTTCGGCCAG

>NZ_CP013006|3|3|2187203-2187297|CRISPRCasFinder
GGGTCGGCATCCATTTCTGCCAG	CAGATCTGCGGTGATCAGGTCCACTGCGGTGGGTGCGGCTCCGAACGCC
GGGTCGGCATCCATTTCGGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013006.1\|WP_005914939.1\|2188659_2189634_-\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP013006.1\|WP_015472058.1\|2201147_2202152_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_033836432.1\|2183791_2185798_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP013006.1\|WP_002806565.1\|2185831_2186197_-\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP013006.1\|WP_033836431.1\|2181261_2183553_-\|MCP-four-helix-bundle-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013006.1\|WP_157733725.1\|2196655_2197285_+\|DUF4145-domain-containing-protein	unknown	unknown	gnl\|CDD\|372658
NZ_CP013006.1\|WP_003489692.1\|2186193_2186502_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379202
NZ_CP013006.1\|WP_005914934.1\|2180409_2180943_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_033836429.1\|2171395_2173768_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013006.1\|WP_076605031.1\|2200408_2201203_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_003489696.1\|2187875_2188658_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP013006.1\|WP_005914940.1\|2189640_2190381_-\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP013006.1\|WP_033836430.1\|2177701_2179879_-\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013006.1\|WP_125825496.1\|2180115_2180343_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_078565967.1\|2199717_2200416_+\|DUF4238-domain-containing-protein	unknown	unknown	gnl\|CDD\|379425
NZ_CP013006.1\|WP_005914931.1\|2173781_2174543_-\|transporter	unknown	unknown	gnl\|CDD\|379259
NZ_CP013006.1\|WP_033481852.1\|2174840_2177630_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013006.1\|WP_089504397.1\|2198428_2199516_+\|IS3-like-element-ISXac2-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP013006.1\|WP_180324591.1\|2191585_2194741_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP013006.1\|WP_078565751.1\|2195441_2196533_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293

Protein	Function_ID	Function_description	E-value
NZ_CP013006.1\|WP_005914939.1\|2188659_2189634_-\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	9.13778e-147
NZ_CP013006.1\|WP_033836432.1\|2183791_2185798_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP013006.1\|WP_002806565.1\|2185831_2186197_-\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.03477e-67
NZ_CP013006.1\|WP_078565751.1\|2195441_2196533_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	1.02945e-26
NZ_CP013006.1\|WP_157733725.1\|2196655_2197285_+\|DUF4145-domain-containing-protein	gnl\|CDD\|372658	pfam13643, DUF4145, Domain of unknown function (DUF4145). This domain is found in a variety of restriction endonuclease enzymes. The exact function of this domain is uncertain.	6.55432e-11
NZ_CP013006.1\|WP_003489692.1\|2186193_2186502_-\|STAS-domain-containing-protein	gnl\|CDD\|379202	pfam13466, STAS_2, STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.	3.92342e-10
NZ_CP013006.1\|WP_033836429.1\|2171395_2173768_-\|chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	6.52063e-102
NZ_CP013006.1\|WP_003489696.1\|2187875_2188658_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.78125e-60
NZ_CP013006.1\|WP_005914940.1\|2189640_2190381_-\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	6.78947e-148
NZ_CP013006.1\|WP_033836430.1\|2177701_2179879_-\|cache-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	6.34193e-111
NZ_CP013006.1\|WP_033836431.1\|2181261_2183553_-\|MCP-four-helix-bundle-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.95985e-108
NZ_CP013006.1\|WP_078565967.1\|2199717_2200416_+\|DUF4238-domain-containing-protein	gnl\|CDD\|379425	pfam14022, DUF4238, Protein of unknown function (DUF4238). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 274 and 374 amino acids in length.	4.30288e-11
NZ_CP013006.1\|WP_005914931.1\|2173781_2174543_-\|transporter	gnl\|CDD\|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	1.25339e-18
NZ_CP013006.1\|WP_033481852.1\|2174840_2177630_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	4.0276e-114
NZ_CP013006.1\|WP_089504397.1\|2198428_2199516_+\|IS3-like-element-ISXac2-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.66335e-30
NZ_CP013006.1\|WP_180324591.1\|2191585_2194741_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0

>NZ_CP013006.1|WP_003489692.1|2186193_2186502_-|STAS-domain-containing-protein
MSTVTLGEDLGIETSADLKQKLAGFLTQDGDLVLDAGEVRRIHTASVQLLCAFVQSRRQAGLHTEFDGCNDTFRDAARLLGVTDALGLPASNDNLKSVENAA
>NZ_CP013006.1|WP_002806565.1|2185831_2186197_-|response-regulator
MSARILVVDDSASMRQMVSFALTSAGFAVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMDGISLIRELRQLPDYKFTPMLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLIATVQKVLG
>NZ_CP013006.1|WP_033836432.1|2183791_2185798_-|chemotaxis-protein-CheA
MSMDLQRFHATFFEESREGLDAMEAGLLSLEEGNRDPEIINSVFRAAHSIKGGAATFGFEAVAGLTHVLETLLDELRSNKRQLESNAVDAMLGSVDVLRALLREAEHGTPADPAAVKAVHTRLNAVLAGEAPTAAAVAKPKEEEPEAWHIGFTPAPSLFMSGNDPLRIIRELEHLGPLQIAARLERMPGFENIDPLEAYLAWDLGLIGKIPRSKIEDTFAWVVDDCELDIRPMAVPGPPPSLAVDAPAAAPVVAVAAAPTAVAEPAAAATPAKAAAAEAESSIRVSVDKVDALINLVGELVITQAMLKQVSTGLDPAHAEQLFAGLDLLERNTRDLQEAVIGVRMLPVDAVFRRFPRLVRDLSSRLGKQVRLRTIGESTELDKGLIEKIADPLVHLVRNSIDHGLEMPDARRASGKDETGTITLAASHQGGHIVIEVSDDGRGLNRAKILEKAAERGIAVPDNPTDAQVWDLIFAPGFSTADAVTDLSGRGVGMDVVRRNIQGLGGEVQLESNAGSGTRVLIRLPLTLAILDGMTVSVAGETLILPLSYVLEALQPAPEDVRAMAGDGRVLRVRGEYLPILSLTNYYGFGGQQSSKESLVVVVEGDGQKIALEVDELLGQQQVVVKNIENNYRRIPGVSGATILGDGRVSLIVDIGGLVRSLKVPQAA
>NZ_CP013006.1|WP_033836431.1|2181261_2183553_-|MCP-four-helix-bundle-domain-containing-protein
MNWFRNLAVARKLAVAFSFTALITLSLGGFALARMQSSAHLLREIGTVWAPAVQQLSEMRALLGEFRTYELAQLAHADDPKAVQNYFERMDKARADVATAQDAYAKTTTAGRQTELYDEVKLKLYDYYKANAALSAAVRAGDLVTANRVSDEQSRPARRDLFAKLVELTKFNVAHMDSEIAQAEATYRRSVHVMLVAMALFVLLAAFSGWFIARSIAGPLGRATRLASAIAQGKLDNAIHVDSRDEAGQLLHSMEGMQRQLQAVLAAQSEMAKRHDAGQISYRMEHDAFPGDYGTMVRDTNSLVGSHIAVKMKLAQIMSHYAIGDFSQDMDRLPGEKAVLSSTMDTVKANLSAMNGEIKLLAQAAANGDFSVRGDTQRFQYDFQAMVESLNQLMATADANLSSLSKLLQAIAAGDLTERMQGQFNGVFAQMRDDANATTAQLADIVGRIQHATLSINTAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVRQNAEHARQANQLAIGAATVASQGGSVVAQVVTTMSGIEVSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKHLIDDSVSKVAEGSVLVDRAGKTMADIVASVQRVTDIMGEISAASQEQSAGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLSDAVSIFKVQQVTAVAPAAKRPAPLRLAAAKPGATKPTTTKRAPAPAGVAAKATATATPRPVTATAANGDASWQEF
>NZ_CP013006.1|WP_005914934.1|2180409_2180943_-|hypothetical-protein
MHTANSNRSARTVLGCVFTVALLAAGVSLPPSFAAPAAPVSVLLDNVPVTALQSLAVDLAQLRDDQRAQLAARHDAARIDAYDERLGNLHQRIARHAGYFQATAPQGEQARKFALVQQQLGKYLAQHRQANRALHEGDLQYAQALSVGHSGDTRHVLWTELQSLQQSVASANVAQRN
>NZ_CP013006.1|WP_125825496.1|2180115_2180343_+|hypothetical-protein
MIADGARNGGGCTIGEHRTAHICLTKSSGNVVEALRMQHRASSSVHGVTRSGRQPGVLCRRFADYLGRTRRDGSA
>NZ_CP013006.1|WP_033836430.1|2177701_2179879_-|cache-domain-containing-protein
MTLKTTVAKTLANVPLKRKFFAQTALVALGIIALAVIAARMQYVDLTDTRRDGIKSQIEMAIAVVNGYAERAEKGEIDVETAKKSALHTLSTMRARGGVDYIYVTDQTPTMLMHPTRPDLVGKPLSDVLSPDGKRVFPAFVTAAQAGGGYVDYAWAKPGQKDPVQKTSYAALYKPWGWVIGTGVYLDDTQSQALVFTGIVAIAGGALVLINLLVGWMIGNSILEPVSRALAAIKGVARGDLSVRTAEHGTDEIGQMLKATDEMVHTLERFSAQTKVMVHMHAGDDVTHRMPTDFPGVYGELATGINTMIFEHLDAIVDAIGILNEYAQGDLSRNAARLPGTRAVLHEAMDAAKASLLAINTEIKRLAQAAANGDFSQRGDATRFKHDSARMINDLNAMMEVSDRNLGKLSELLASLAEGDLTARLDGQYHGVFARMRDDANATATQLAGIVGRIQQAASSITGSASEIAAGNNDLSQRTEQQAASLEETAASMEELTSTVKQNAESARQANQLAIGAASVASQGGQVVSQVVDTMSGIQTSSRKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKHLIDDSVGKVSEGSLLVDQAGKTMAEIVSSVQRVTDIMSEISAASQEQSAGIEQVNLTVTQMDESTQQNAALVEEATAAANAMQQQAQQLDEAVSSFRIVAAASNQFGYAGARAPTRVALAAH
>NZ_CP013006.1|WP_033481852.1|2174840_2177630_-|methyl-accepting-chemotaxis-protein
MTSPSTHSPFSGRLAYRLMFGTAVIASLCFGLTAAITYWQSSRALSASAQATMQNAARYQAEQIGSDLGQALTTGQSLATTLLVQRANDGISRDSAAAVVHDQLLDHPEWVGMGTLWEPQAFDGKDSAFANATGHDATGRFMTYWGRSDQTLVREPLTDYETPGLGDWNLKPRALLRQTVAEPYDYKIGGKTVLMTTLSTPILQDGKYLGAVTVDVALAALQQRLGALRPMQDGYVELLSPAGVVLASHDTTRIGKQVTDARHRTMLEAIKAGKDALDFTPDADGAVSAYVPLQIGKAQERFALGVVVPYATIMQQAHHLLWTILAVGLGSALVLSVALFALLRRQVVRPLEAAAHVADAIASGKLDNQITVQRQDEVGRLMGAMQRMQSDLRERIERDAQVANENLRIRTALEHSEMEVLLADEQHNAVFITQALHTSFKQGEPAFHAKGQTGFSADAVVGKPMDYVFGNDSEGTARTQRLRQLQSTSTERYRFGPVTLDLTMTPLYAPDGRRSGSMLLWRNISAEVSTQQEVAELVQSALMGDFGQRLALEDKHGFYLEFGRQLNGLLETTSLSLERISSLLSALAEGDLTVRMDGDFQGVFARMRDDANATVAQLTGIVSGIQTSATQISAAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAEHARQANQLAIGAADVASHGGSVVAQVVTTMSGIETSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVEQGASLVHQAGTTMSEIVASVQRVTDIMGEISAASQEQSSGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLTEAVAVFRLNHAVKPVLAASTGKPAMRAVGTTKPAPARGKRVATPLRQSVGKSSGTAVNDSQWQDF
>NZ_CP013006.1|WP_005914931.1|2173781_2174543_-|transporter
MKPSVIASCFVLLGVMGQARAEDPIATDRPDFVESSLTVGDRRVQVETSVAWERDDAVDAYSTPTLLRYGLGQTWELRLETDGWQRIDLPGDAQVSGMSDVSLGIKHHLASSDDGKTSLAWLLHVDLPSGAQALRGHGARPSFRLVAEWELSDSISAGMMPGVIWDDDGQGNRYTAGIFGAVLGKAWNDRVRSFVEVALPQIANSDDGGTVALLDIGSAWLLSNDVQLDAVYSRGLNDRSPDHALGVGLSFRF
>NZ_CP013006.1|WP_033836429.1|2171395_2173768_-|chemotaxis-protein
MKIMHMLGVLVLVAALALLALGGVGYNGQRGLLDAIAAQVISSDALRNHMQADMMHDALRGDVTAALLAASTKDDKAVAAARTALGEHAGEFRESLAANRKLPLAPALRSELDAVTPALQAYIASADHVVNAAETHADSAAAYADFNDKFSQLETRMGAISERILALNEASRRQAEQYSHRVMWQQGSAVVLALVCLALAAGWILRSVFGLLGGEPQLAMAAAQHIAEGRLDQPIPVAAKHSRSLMAALARMQRDLRERLERERSIAAENLRIRTALDNASTGMYIADPDLTIIYTNGALQNLLHTYADDIQACAPAFHRTANLVGQPVSLLEVGNAQDAEIYQRLDRQGAAQREVQYRSTCIAQNVSAIRDETGAHLGFVCEWRDRTAEARVEIDVADVVRSAAAGDLSKRIDSAGKQGFFLQLAQQLNALLDANAVSIAEVSRLLSALADGDLSARMQGDFHGVFATMRNDANTTAEQLALVIGGIQQAAGSIHTASSEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAESARQANQLAIGAAGVASQGGAVVAQVVTTMSGIEVSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVAEGSQLVHQAGTTMADIVASVQRVTDIMGEIAAASQEQSSGIEQVNLTITQMDEATQQNAALVEEATAAARTMEDQASQLAHAVSRFTLADAPPSQAATPAAKKATVVAVARASKTSTRAPGARKPAVNAPAATAGNDNQWQDF
>NZ_CP013006.1|WP_003489696.1|2187875_2188658_-|ParA-family-protein
MRIWAIANQKGGVGKTTTTLALGRGLAALGHRVLLIDLDPHSSLTRAFGVAIDPPPRGVLDLFGTPPSDLASLAHESSIPGLSYVCAQAALATLERRSANQPGLGLALQNAMTRHAGQHDYILLDCPPTLGLLMINALAACDRVVVPTQAEPLALHGLASMVRTADMVQRSRRRELPVSILPTLFDRRTRAGTETLKEMQATYGPVVWEDAVPVDTRICNAAALTVPAVGGDYQGRGLSAYRRALEWVLADDAMRMEQAA
>NZ_CP013006.1|WP_005914939.1|2188659_2189634_-|flagellar-motor-protein-MotD
MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGSSNKASPVQLGKTQSLGADYDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKALAPLIDKQLITIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLAAVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKSDGGQTAVTTESGTSSVPAVIQGVQ
>NZ_CP013006.1|WP_005914940.1|2189640_2190381_-|flagellar-motor-protein
MDRLSVIGLVLAIVAIVGGSVLKGAGISSLWSPAAFVIVIVGTVAAILLHTSPAVFRRAFKILRWVIQPPASDRPQLVARIVEWSNIARRQGLLGLEDQLPRQDDAFLRKGLQMLVDGVEPEAMRNMLEIEVDNQERQDLAAAKVFEGMGIYAPTLGIIGAVLGLMAVMKNLADPAMLGHGIAAAFTATIYGIASANLLFLPVAAKLKSVIHCSTNEREMAIEGLIAIAQGENPRNIESKLAGYLH
>NZ_CP013006.1|WP_180324591.1|2191585_2194741_+|TonB-dependent-receptor
MDRYKAAEADHHWESTIEMNCTPFARNRSTLYAGIAIALFASAASTTVSAQQADGTPAPAGQAALQATDLDAVTVTGYRYAIEKSLEQKRNANAVVDVITAEDVGKFPDKNVADALQRVPGVVISRDGGEGKNVSVRGLSSELVLTELNGNYIATAESNGDPTRSFNYTLLPSNLLGSAELYKTPEARIDEGGIGGTVILQTRRPLELEPHSGFVSAEGTWSDTSKKTDGQFSGSYSWHDKDNRFGVFVGYTQQKRTARTLNASTESWQWYGRDEGGPAVDVNGNPSDFNANWWGGTGFWNQDGNYYTGFMMPTAVSLEAKREERERKGGQLTLQFKPTDDLTLTANYFRFDLSQDSQTNTIKIPEWNIARYYGDGNWRGGRLLDGLQFDPSGTIVTGAAYSLRPGKTYYCSEAQAAATGLPPGGWGSDDCTVPTPQITGSYNIEKSQSQTVDLGGEWRGEQVDVAFKAGRTWAKGGPELQFSLPIKPRLQNADGSWTNGNFASAWDLTGTPSMTFSPELMQKLRDGILQVDLGSTGSSWTRNTNQQQYAQIDTTWHFDGEVFDSLQFGIKRRDGGIHRNTGNNYWVCPGTDPSDYDNRYWNGRCNAIATQFSPGLLFAQDNLAGGVNASAFPAINFPGYIGYLNQTYGAMQTRSEDNFVYNVDEEIYSTYLQLNFHTERLRGNVGVRVARTGQRADSTDKVTAYNDYFFDGADGNPLACQQGAATPGGAPADTYCGTEGYWRLSDSVQRTESFVVSGLDRNYTDVLPSFNLAYDLTENLLLRAAASKVIARPSYNDIAAPGSLEFYSPEYVADRRLTGGASEQGWYGSGSNKNLEPYKANQFDLGLEWYFQPGSVAGVGLFRKNVENFAVDVISDVNMMVDGQPVTVQNYSTQAGGQDAVSQGVELYAQHTLPFGLGVQFNYTYNDASKAAVRLEDGTEAGKTSMPGSAKNQTNLTVFYETDSLLLRASYNRRGELVQGLVNGLNVFEEPYYQIDVNAAYNITPALSLTASVLNLTKQEFRSHLGDDTRARFYTGGYAGRLAYLGLTYKF
>NZ_CP013006.1|WP_078565751.1|2195441_2196533_+|AAA-family-ATPase
MARIISVFNNKGGVGKSTICWNLGHALGAQDKKVLLVDFDPQCNLSIAVLGEEGFVNNLPQANQPYGTTIRSFLQRFLQNTGGEEVFLHKGRHTSTNVDLVAGDFWLNVYADSLNVGNDLLAGTGLSRYVALRRLVAKAEERAGYKYDFVLVDLPPSFGALVRASFYSSDYYIVPCTSDNFSVYCVGLIGQMVPAFVDDWNTGLLRFKATNPHFHEFDQLGCPVFAGWVFNGFDTASKRRNAIEMGSHPKGPKEMIQADRTMHERLERAVREDLVAPLSQRINTYLPVAKVLPTNFRVGDIEDANVLIQNSIWLSVPLGELEQHNQVASLRDRRGWNDNQAEQIRLFKRKFDETAAKLIAICL
>NZ_CP013006.1|WP_157733725.1|2196655_2197285_+|DUF4145-domain-containing-protein
MTEVIEDTTWSDGENSVDWNAKFYTVMCLGCEVISFAKKQTCSEEWDQNSDGSLYHPATIFRYPEAAGRVAMKDSHLLPEKLNSMYQETLGSLNKGFQILTAVGVRGVIETVCKDRSATGDNLQKKIEALIPMGLLTTENAKTLQKLRILGNAAAHEVVPPSIKDLGLALDVCEHLLQGVYVLPEHTRLAFGDTDSPKTKADKKTTGSN
>NZ_CP013006.1|WP_089504397.1|2198428_2199516_+|IS3-like-element-ISXac2-family-transposase
MKKSRFTDSQIIAVLKQAQAGAPVPELCREHGISSATFYKWRSKFGGMDVSMVARMKELEEENRRLKKMYAEAQLSTDLLKEALGKKMVRPSQRREMAQSAVTSGRTNIRHACQTFAVSQTCFRYQAKASEQNARIADWLVRLTTAHRDWGFGLCYLYLRNVKGFGWNHKRVYRIYRELELNLRIKPKKRLVRERPEPLAVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRLGIRVEHIQPGKPQQNAYVERYNRTIRYAWLARTLFDTIDQVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
>NZ_CP013006.1|WP_078565967.1|2199717_2200416_+|DUF4238-domain-containing-protein
MAVRTPDFIQSIQRANGQLLKRVSQIMLSTPEQAMKALRAKPANFEKSDAELFDEALRLVDFMKEDQFEVITAHSEAVLTALPLADTVAPTFFLRGWTILEAPLGSSFVTTDAAMMLTSLARRPHRFGLGHGSPDALTLLPLSSGYAIATFGMGPTINRWRIDSQNVREINLSLTDHAQRFLFARDDRHAAAVSRAARMKENSWNQGSTSGDVALLCKVCFRLKLLFQPLYV
>NZ_CP013006.1|WP_076605031.1|2200408_2201203_+|hypothetical-protein
MSEILEVLREVRPPPHPLEACIFGNRVVFSKFFQRQLIYFLYYLKIYELDTGTNGLLNRQLLNAHTTGLKRFAHPCNACKSTIGLFMKITFIKMIVLGVLVGSSAGAGAAPPSSDGELLKSSSILQEEVDLATARIRSSKQFEAYLAATPSSVAFKLPPSVLSKFRRSMVFTERGLASFSYDGLIDYLNTKELYELLGLFGVQRTISSIPGIVGKNEIERKIIEVNDINPRQDSYCLINQGSNSCKYEYKSMCSQACSSSGNGR
>NZ_CP013006.1|WP_015472058.1|2201147_2202152_+|hypothetical-protein
MNIKACALRPVLHQVMVGRMCLQVFLRRMLVAFAALACGHAFAQDSDIKISVEEIGKARVVRRSDAMHGFTLMVKSYQRLVRPKLLSIDALSMEDIHVVFDLSAELAFYSNLYKGGLDVSYLRDMSRAYAILSKNGRLTESDKFAMRETLEQYRDFRSAEIISGHRSDVILKTDGLGYVINPAPYRGNSSRPVLSFSSDSKKFEISEKKVSKEFQIIVLGGCHFASDAAARIDADDEISSAFEKANAIWIASSTTPLNVEDFSNWQSDHPRQKLVIAFSNLDWPGVRFDSIPTFHLFRRGHLVAVLTGWSSDEKSLNDLRSILAKNDFLLPRAD

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Crispr_ID: NZ_CP013006_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013006_4

4902826-4903010

Orphan

Consensus_repeat	Method
GTGCAGGTGCGCCCCTCGGCCGAGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013006_4

>merge|NZ_CP013006|4|4902826-4903010|CRISPRCasFinder
GTGCAGGTTCGCCCGGCCGCCGACCAGCTCGCCCAGCAGACACTGGAACGCAACAGCGACATCCACACCCTGGCCGCCGTGCAGGTGCGCCCCTCGGCCGAGCAATTGGCCGCCCTGGCCTCCGAACAGGCCGGCCCGCGCATCGTCACCTTGGCGGCGGTGCAGGTGCGCCCTTCGGCCGAGCA

>NZ_CP013006|4|4|4902826-4903010|CRISPRCasFinder
GTGCAGGTTCGCCCGGCCGCCGACCA	GCTCGCCCAGCAGACACTGGAACGCAACAGCGACATCCACACCCTGGCCGCC
GTGCAGGTGCGCCCCTCGGCCGAGCA	ATTGGCCGCCCTGGCCTCCGAACAGGCCGGCCCGCGCATCGTCACCTTGGCGGCG
GTGCAGGTGCGCCCTTCGGCCGAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013006.1\|WP_005912209.1\|4912984_4914010_-\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP013006.1\|WP_003468167.1\|4894615_4894774_-\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP013006.1\|WP_005912259.1\|4890418_4892092_-\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	unknown	unknown	gnl\|CDD\|235310
NZ_CP013006.1\|WP_033479470.1\|4911923_4912520_+\|Ax21-family-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP013006.1\|WP_180324469.1\|4909838_4911548_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP013006.1\|WP_003488348.1\|4903211_4903688_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP013006.1\|WP_005912222.1\|4900898_4901915_-\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
NZ_CP013006.1\|WP_005912227.1\|4898063_4898447_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP013006.1\|WP_033836997.1\|4896079_4897741_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236443
NZ_CP013006.1\|WP_005912213.1\|4907015_4908362_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP013006.1\|WP_005912215.1\|4905358_4905976_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_005912216.1\|4904036_4905266_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP013006.1\|WP_003488921.1\|4902016_4902337_-\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679
NZ_CP013006.1\|WP_005912231.1\|4894838_4895849_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187552
NZ_CP013006.1\|WP_005912258.1\|4892926_4894030_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP013006.1\|WP_005912225.1\|4898599_4899502_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|179147
NZ_CP013006.1\|WP_003488515.1\|4914025_4914538_-\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP013006.1\|WP_003488942.1\|4892088_4892733_-\|SCP2-sterol-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225706
NZ_CP013006.1\|WP_005912214.1\|4906078_4906825_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_005912212.1\|4908346_4909789_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP013006.1\|WP_005912209.1\|4912984_4914010_-\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
NZ_CP013006.1\|WP_003468167.1\|4894615_4894774_-\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00222793
NZ_CP013006.1\|WP_005912259.1\|4890418_4892092_-\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	gnl\|CDD\|235310	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed.	0
NZ_CP013006.1\|WP_033479470.1\|4911923_4912520_+\|Ax21-family-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	4.99575e-108
NZ_CP013006.1\|WP_180324469.1\|4909838_4911548_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP013006.1\|WP_003488348.1\|4903211_4903688_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.47465e-81
NZ_CP013006.1\|WP_005912222.1\|4900898_4901915_-\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP013006.1\|WP_005912227.1\|4898063_4898447_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.77539e-20
NZ_CP013006.1\|WP_033836997.1\|4896079_4897741_-\|AMP-binding-protein	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	0
NZ_CP013006.1\|WP_005912216.1\|4904036_4905266_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.76058e-21
NZ_CP013006.1\|WP_003488921.1\|4902016_4902337_-\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	9.95984e-10
NZ_CP013006.1\|WP_005912231.1\|4894838_4895849_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187552	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs. Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.39854e-82
NZ_CP013006.1\|WP_005912258.1\|4892926_4894030_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	0
NZ_CP013006.1\|WP_005912225.1\|4898599_4899502_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|179147	PRK00870, PRK00870, haloalkane dehalogenase; Provisional.	1.66296e-47
NZ_CP013006.1\|WP_003488515.1\|4914025_4914538_-\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	3.40232e-69
NZ_CP013006.1\|WP_003488942.1\|4892088_4892733_-\|SCP2-sterol-binding-domain-containing-protein	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	1.0762e-42
NZ_CP013006.1\|WP_005912213.1\|4907015_4908362_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.9306e-175
NZ_CP013006.1\|WP_005912212.1\|4908346_4909789_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.49397e-32

>NZ_CP013006.1|WP_003488921.1|4902016_4902337_-|DUF4156-domain-containing-protein
MRVLMLSVLVATSTAACTWVPIEQSGKSVRVLPAGPVPAGCQQQGEVVVTVKSKVGFYNRNPLRVQEELETLARNEAPGANANAVQAQGQPADGSQRFNAFRCPPR
>NZ_CP013006.1|WP_005912222.1|4900898_4901915_-|3-oxoacyl-ACP-synthase-III
MLFQNVSIAGLAHVDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARTELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFMAARQVLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW
>NZ_CP013006.1|WP_005912225.1|4898599_4899502_-|alpha/beta-fold-hydrolase
MNYPGYPFPPKRLEVRPGVAMSYLDEGPRDGEVVVMLHGNPSWSYLWRHLVSGLSDRYRCIVPDHIGMGLSDKPDDAPDAQPRYDYTLQSRVDDLDTLLRHLGITGPVTLAVHDWGGMIGFGWALSHHAQVKRLVITNTAAFPLPAEKPMPWQIAMGRHWRPGEWFIRTFNAFSSGASWFGVSRRMPADVRRAYVAPYNNWRNRISTIRFMQDIPLSPADQGWSLLERSAQALPAFADRPAFIAWGLRDICFDKHFLAGFRRALPQAEVTAFNDANHYVLEDKHEVLVPAIRAFLERNPL
>NZ_CP013006.1|WP_005912227.1|4898063_4898447_+|YkgJ-family-cysteine-cluster-protein
MAHPCLTCGACCAYFRVSFHWSEADPALGGRVPIELTEALRTHERAMRGTSQSQPRCIALDADIGRYSRCSIHDRRPSSCAAVPASLEFGQRSAQCDKSRLAHGLHALTDADWVGVDDAQRNPLPAV
>NZ_CP013006.1|WP_033836997.1|4896079_4897741_-|AMP-binding-protein
MTTLCNIAATLPQLARERPDQIAIRCPGGRGANGFAAYDVTLSYAELDARSDAIAAGLARHGIGRGARAVVMVRPSPEFFLLMFALFKAGAVPVLVDPGIDKRALKQCLDEAQPQAFIGIALAQLARRLLRWARSAKQIVTVGGRYGWGGVTLARVERDGAGAGSQLADTAPDDAAAILFTSGSTGVPKGVVYRHRHFVGQIELLRNAFGMQPGGVDLPTFPPFALFDPALGLTSVIPDMDPTRPGSADPRKLHDAINRFGVTQLFGSPALMRVLADYGQPLPNVRLATSAGAPVPPDVVAKIRALLPADAQFWTPYGATECLPVAAIEGRTLDATRAATEAGAGTCVGHVVPPNQVRIIAIDDAAIADWSGVRELATGEVGEITIAGPTATDTYFNRDAATRIAKIRERCSDGSERVVHRMGDVGYVDAEGRLWFCGRKTHRVEAASGPLYTEQVEPVFNVHRQVRRTALVGVGAPGQQQPVLCVELQPGVSASAFAQVESDLRALGAAHPHTAGVARFLRHSGFPVDIRHNAKIGRETLAVWAAQQLHKRG
>NZ_CP013006.1|WP_005912231.1|4894838_4895849_-|NAD-dependent-epimerase/dehydratase-family-protein
MKVLVTGGGGFLGQALCRGLRARGHEVVSFQRGDYPVLQRLGVGQIRGDLADPQAVRHAFAGIDAVFHNAAKAGAWGSYDSYHQANVVGTQNVIEACRANGVPRLIYTSTPSVTHRATNPVEGLGADEVPYGDDLRAAYAATKAIAERAVLAANDAQLATVALRPRLIWGPGDNHLLPRLAARARAGRLRMVGDGGNLVDSTYIDNAAQAHFDAFEHLAVGAACAGKAYFISNGEPLPMRELLNRLLAAVDAPAVTRSLSFNTAYRIGAVCETLWPLLRLPGEVPLTRFLVEQLCTPHWYSMEPARRDFGYVPRISIEEGLQRLRSSSSNDIAITR
>NZ_CP013006.1|WP_003468167.1|4894615_4894774_-|DUF1328-domain-containing-protein
MLHYAIIFFVIAIIAAVLGFSGIAGAATNIAWILFVVFLILAVISMFRRGKV
>NZ_CP013006.1|WP_005912258.1|4892926_4894030_+|D-alanine--D-alanine-ligase
MRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPLLIGIDKQGQWHINNSDSFLLHADDPARIALHRSGRGVALLPGAHQQQVRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFACFNRHTAAMADVDALIAQLGLPLFVKPANQGSSVGVSQVRSADQFPAALALALAYDHKVLVEAAIAGREIECAVLGNAAPQASVCGEVVVHDAFYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGMARVDVFLCADGRIVINEINTLPGFTRISMYPKLWQASGLDYRGLITRLIELALERHADDHLLRSAVQPH
>NZ_CP013006.1|WP_003488942.1|4892088_4892733_-|SCP2-sterol-binding-domain-containing-protein
MPGSLFNSLKPLAGQALQAALNRALALDPDTRDALLPLEGQRIALTLEAPALALQIRVHERRLLVGPVDQAQEPDLAVRSSLAGLLGQLPFLANARRTGAPAGRLKVSGDAELARQLQQLAGRFDPDWQLPFVAVFGDILGVQIAGAVRAALQQARRSAVDLAQSAAEFVTEESRDVVPRAELEAFHDDVDELRDDVERLAARVSRLRASGGAA
>NZ_CP013006.1|WP_005912259.1|4890418_4892092_-|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB
MKAILRASRIGRVILRYRLDALLEGTPAERWLRLAKPFVPRASAEIAAQSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVEAALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLATLVERTHPRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPRLDIWAVARPVLERILRERYSPRRVLRELSKRLPEIMTHAPDMPRLVHSWLKQQVEGRHQIDIRSPELLALDLSLRKLQTRVVTAITGSGLLVVAAVLYGLHPDGWYLGTVPVWSWISGGAGSAALLVAWLRR
>NZ_CP013006.1|WP_003488348.1|4903211_4903688_+|tRNA-(cytidine(34)-2'-O)-methyltransferase
MSAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLQVHADLPSALAAIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ
>NZ_CP013006.1|WP_005912216.1|4904036_4905266_-|MFS-transporter
MPMTKTRPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVIGCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWRYGFAAVFLLTAFFGALALVAVLAIPAAAIDHRAARGLASNDGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYGMAIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGAGLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPAFGGWLAHAFGYRIAFLTLGAIALLAVALWAGCRGMLQAGASVQAETML
>NZ_CP013006.1|WP_005912215.1|4905358_4905976_-|hypothetical-protein
MHWVDPDFLPATRGTLARFLLNPKADIDGLLLTDGTEVHTPPHLSEALLKALRPGSALTVRGLKPRDVEMLVALAIDPEGGKRILDEGPHGPHAKPKPKPPGKPPKPEVAQHSGTITRLLHGPHGQVHGVLLDDAVTVRFPPHAGGDFAKQLVVGKPLVAEGETKATPHGVLIHAHALGGKAATLKQIEHPPHGPAHKPKPKPKH
>NZ_CP013006.1|WP_005912214.1|4906078_4906825_-|hypothetical-protein
MLRQTVLAIALACTIGAAAAQVAAPPPAPNGPIGGPPAPPTPVAATPVSVGGTVERFLLNPNGDVDGLWLRDGTQVGFPPHLSSEVKAAVRAGDSVVVKGFRLGNLPVLQVSSIRSGRSGREVVDRPPTFGAAPPPPPTPGQLTPLQSDGTIQRLVYGPAGEINGALVSDGTVVRMPPHLALQFADLLRVGAPLSASGLGVATPDGRAIEATQLGRDRSSLRALFTAPRPDGPLPPPPPGTPVPPAGR
>NZ_CP013006.1|WP_005912213.1|4907015_4908362_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MARILIIDDDAAFRTTLQATLRSLGHTAVAAENGPDGLARLSEGGIDMAFVDFRMPGMDGISVLRARLDDAQARQVPLVMLTAHVSSGNTIEAMTLGAFDHLVKPVGRADIVEVVERALLSRADAQAAATDALSAPVEDDDALVGHSPAMRTVHKRIGLAAASDLPVLITGETGTGKELAARALHRASPRASAPFVAVNCAAIPLELMESELFGHRKGAFSGASSDRRGLIREADGGTLFLDEIGDMPLPMQAKLLRFLQEGEVTPLGGSGPQKVDVRVLAATHRDLAACVADGRFRSDLRYRLNVVPIELPPLRERGQDILLLAQHFLSANAARAQSLSPAAQERLLAHRWPGNVRELRNVMQRSQVLVRGASIDAADLEEALGEAGEAPPNGASALTGTLPEAVAQLEKQMIQSALEQSQGNRAEAARRLGIHRQLLYRKLEEYGL
>NZ_CP013006.1|WP_005912212.1|4908346_4909789_-|HAMP-domain-containing-histidine-kinase
MPRSLLRQLLLIWMVIVAACVGVATMLYGLYRQTEGVRLEEARQQLGGQCARIVQRYAGASEAARRGDDGAGLAAVVVQLVLADAPGVEGGVWDLHKGFVAYAYPTYDGSDHKTDIPAAEWANIVNTAQQSVTTKQAAQYRRDGRREVLLIRACPLASGSAAWTMTRVPASKADAWRPLVVGMLLIFAMVAISAIALGVLVRRWSQRLQRIQQALAADTETPHIPPTGTPELDRLGAAVNDYAQRNAQALTRTRRLADELSRHERLAALGRMTATVAHEIRNPIATMRLALENEIARGDATPDDAAHGELMLGQIRRLDGVVESLLGMVQPIRLQLETVVVQDWLATLLEHSPLPPGTSPPRVLLPAAPLRWTLDPQQLGRAVHNLLRNAAQHADPGSEVTLQAAAVEGILQLQVCNRGAPIAEPIAAHLFEPFVSGRADGNGLGLALVREIARAHGGHARYAHADGLTHFILELPWRAS
>NZ_CP013006.1|WP_180324469.1|4909838_4911548_-|ubiquinone-dependent-pyruvate-dehydrogenase
MARFLAETLQSAGVERIWGVTGDSLNGLTDALREMQTIEWMHVRHEEVAAFAAGAEAAVTGQLAVCAGSCGPGNLHLINGLFDCHRSRQPVLAIAAHIPSSEIGLSYFQETHPQELFRECSHFVELVTNPAQLPEVLHRAMRTAILQQGVAVVVIPGDIALLEVDKHVSSAWPALRQPRVLPAAEDVRQLAELLQQSKAVTLLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWDNPFDVGMTGLIGFSSGYHAMLNCDTLLMLGTDFPYRQFYPKDATIVQVDRDPSALGRRTPLQLGIAADVGETIAALLPQLQRREERGFLEKSLAHYRKAREGLDDLAVPADPGQPLHPQFLTRLISQIADQDAVFTCDVGTPTVWAARYLRMNGKRRLLGSFNHGSMANAMPQALGAQAAFPGRQVISLSGDGGFAMLMGDFISLAQLHLPVKVVVFNNASLGFVAMEMKAAGYLDTGTELRNPDFAAMSNAMGILGIRVDESSQLERALRQAFAHSGPALVDVRVATQELAVPPAIKLEQAKGMGLYLLKAVMSGRGDEVIALVKTNLR
>NZ_CP013006.1|WP_033479470.1|4911923_4912520_+|Ax21-family-protein
MKTSLLALGLLAALPFAASAAENLSYNFVEGDYVRTPTEGRDADGWGVKASYAIAPNFHVFGDYSKQNADDNNNVFENTDSDFQQWGVGVGFNHEIATSTDFVARVAYRKLDLDTPNINFDGYSIEAGLRNAFGEHFEVYALAGYEDFSKKRGIDIGDNFYGRLGAQVKLNQNWGINGDIRMDGDGNKEWSVGPRFSW
>NZ_CP013006.1|WP_005912209.1|4912984_4914010_-|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MSDLTHKIAVLGAGSWGTALAALLARHGHPTVLWGRDAAMVDTIDRTHENARYLPGIALPDSLRATTDLQAAVADATWILVVVPSHAFTETIRLIAPLRPPGAGVAWATKGFEPGSGRFLHEVARDILGPSVPLAVVTGPSFAKEVTLGLPTAITVHGDDTAFAQVVADAMHGPTFRAYTGDDMVGAELGGAMKNVLAVATGVADGMQLGLNARAGLITRGLNEMLRLAAVIGARPETLMGLAGLGDLVLTCTGDLSRNRRLGLALGRGQSLDEAIREIGQVVESVQTADEVMRQAEHHGIELPISNAVRAVLHGEITPEAGLKELLARERKPEYPQTLFT
>NZ_CP013006.1|WP_003488515.1|4914025_4914538_-|protein-export-chaperone-SecB
MSDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQRLNDNAFEVVLAVTLTCTAGGKTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTSLADSEPAGNA

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Crispr_ID: NZ_CP013006_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013006_5

5174699-5174774

Orphan

Consensus_repeat	Method
CGCGGCCAGGGCCGCTCCTACAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013006_5

>merge|NZ_CP013006|5|5174699-5174774|CRISPRCasFinder
CGCGGCCAGGGCCGCTCCTACAGAAGCCGATGTGGCGTCGGACGACTCGCCCGCGGCCAGGGCCGCTCCTACGAAA

>NZ_CP013006|5|5|5174699-5174774|CRISPRCasFinder
CGCGGCCAGGGCCGCTCCTACAGAA	GCCGATGTGGCGTCGGACGACTCGCC
CGCGGCCAGGGCCGCTCCTACGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013006.1\|WP_005922896.1\|5167692_5168247_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_033836978.1\|5157030_5160678_-\|urea-carboxylase	unknown	unknown	gnl\|CDD\|274264
NZ_CP013006.1\|WP_005912357.1\|5167073_5167694_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239118
NZ_CP013006.1\|WP_011052905.1\|5182349_5182640_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225655
NZ_CP013006.1\|WP_003482301.1\|5182650_5183706_+\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP013006.1\|WP_005922907.1\|5153172_5153604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_005912377.1\|5181155_5181701_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	unknown	unknown	gnl\|CDD\|275223
NZ_CP013006.1\|WP_180324556.1\|5154079_5155141_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_CP013006.1\|WP_005922888.1\|5179600_5180395_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NZ_CP013006.1\|WP_051176294.1\|5169056_5171249_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273631
NZ_CP013006.1\|WP_033836981.1\|5175024_5178429_-\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|273633
NZ_CP013006.1\|WP_003482333.1\|5164276_5164609_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_003482305.1\|5181697_5182360_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|377516
NZ_CP013006.1\|WP_003482308.1\|5180394_5181144_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838
NZ_CP013006.1\|WP_003482327.1\|5166791_5166971_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_005922900.1\|5160761_5162561_-\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
NZ_CP013006.1\|WP_033836982.1\|5178978_5179218_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_005931670.1\|5183840_5184221_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013006.1\|WP_005912384.1\|5184224_5184770_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP013006.1\|WP_089504418.1\|5155363_5156583_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NZ_CP013006.1\|WP_033836978.1\|5157030_5160678_-\|urea-carboxylase	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP013006.1\|WP_005912357.1\|5167073_5167694_-\|hypothetical-protein	gnl\|CDD\|239118	cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	5.31253e-16
NZ_CP013006.1\|WP_011052905.1\|5182349_5182640_+\|STAS-domain-containing-protein	gnl\|CDD\|225655	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only].	2.59147e-12
NZ_CP013006.1\|WP_003482301.1\|5182650_5183706_+\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	4.6414e-101
NZ_CP013006.1\|WP_180324556.1\|5154079_5155141_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	2.1322e-127
NZ_CP013006.1\|WP_005922888.1\|5179600_5180395_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	5.14582e-121
NZ_CP013006.1\|WP_005912377.1\|5181155_5181701_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	7.61801e-63
NZ_CP013006.1\|WP_051176294.1\|5169056_5171249_-\|AAA-family-ATPase	gnl\|CDD\|273631	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. [DNA metabolism, DNA replication, recombination, and repair].	1.98825e-175
NZ_CP013006.1\|WP_033836981.1\|5175024_5178429_-\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|273633	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit. This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP013006.1\|WP_003482305.1\|5181697_5182360_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|377516	pfam05494, MlaC, MlaC protein. MlaC is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. This family of proteins is involved in toluene tolerance, which is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation. Many proteins are involved in these processes.	1.51576e-50
NZ_CP013006.1\|WP_003482308.1\|5180394_5181144_+\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.82887e-81
NZ_CP013006.1\|WP_089504418.1\|5155363_5156583_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.09823e-123
NZ_CP013006.1\|WP_005912384.1\|5184224_5184770_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	3.16831e-84
NZ_CP013006.1\|WP_005922900.1\|5160761_5162561_-\|allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0

>NZ_CP013006.1|WP_051176294.1|5169056_5171249_-|AAA-family-ATPase
MNLLADLQAKSHLRTLDHAFAQSLRRLRPDTPDTVLLAAALSSLAVANGHAGLDPRRPRLLVDADVAWPAADAWMAQLQASPWIAQPDDPLAAAVSDAPLVLEHGLLYLRRYREYEARLAAGLTRIASHTLPATESAALAAVFAALFPSATTGQDRQAQAAALALRRALLLITGGPGTGKTTTIARLLLLRLAQAHAAGQPPPRIALAAPTGRAAERMAESLRIALARAIEQGLPAEHQGASPLPPAGEGARRAGEGTAPTDFSWHSALPTGASTLHRLLGVIPDSPHFRHDADNPLPFDLIVVDEASMVDLPLMCKLVQAVADGTQLILLGDADQLPSVEAGDVLAAILQAAGPGDALQPEDAQALQPLLGSAPVERPSAVASTHSGGLAGHRMHLLRGYRQAEDFALAPLADAIRVGDADTALALLRSGELPGVHFHEDGEDPLALGRDALLAHWRALANAQDPAAALRDAGRLRLLTAVRAGPHGARGLNARIEQLLADTGSGARRLGGASPWFQGRLLLITENSYRHGLFNGDVGICLRSDPGALPGRSDAGPSLGQGEASAATARGHAAPSSRPGHAGDNAHRDAPAADSRAQGPLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSRELLYTGITRARRALHLAGSEAVIRSALARHAARISGLAWRLGAEQMQPTADAASLLRATTPTALGNPIQGSLF
>NZ_CP013006.1|WP_005922896.1|5167692_5168247_+|hypothetical-protein
MMVMDAIFSRTLFPHQIARLGEQGAGIGHSGDDHHAELVGRGRQTLAHRTDAIGVDGVRRRTQRVSLGKELGMLPGLRGRHGIVLTARDANIRQCQAIEDTLCQLRALRSHVGIAQGDDDVGQTQKAFDLQLLGDGVGHDIVGVPVRVGEQQRVERQLRPVQAQLPQYGRLGGRQHGCVGDAEF
>NZ_CP013006.1|WP_005912357.1|5167073_5167694_-|hypothetical-protein
MGGIDPARDADGFVQPDARPYNNATDIHAARALYRRAQQLGIPLRILTKEAAYRAAVPPAFYEGIARNGHPVGEYLRDVQKNALKGLWEGIQANLIRDLDTAWFFRTFVAAQPQDPVAAGQQGSMSFDAIWPQVTKLNLYDPLTLLAALPGTARLLFQPTPMHREGASPVEHVGHAEVVRPEKARLLLSALAKAALAHDDEEQHAR
>NZ_CP013006.1|WP_003482327.1|5166791_5166971_+|hypothetical-protein
MAHKPYSALARRVRRCPTVQSSNHEGVMSKGMDQKKNQKKEPTKTLKEKRAAKQEKRGK
>NZ_CP013006.1|WP_003482333.1|5164276_5164609_+|hypothetical-protein
MMKWMGTALAAALLMSGCAKVEGEKFVGHWVNLQSQDETMDIERNGETFMVRSTTPKFFSRQPKTESYPAVYKDGALQVTNDGETVNFAIDESNGHLNTGGEQYERVPAK
>NZ_CP013006.1|WP_005922900.1|5160761_5162561_-|allophanate-hydrolase
MTHTAFWTLADWQSAYAQGAAPAELLSCLIAGLPQGDVAWISRLSLDGLQSRLAGLAQQLMQVGGDLSKLPLYGVPFAAKDNIDVAGLPTTCACPEFAYQPTHNAAVIDRLEAAGAVVIGKTNLDQFATGLVGTRSPYGPVPNAFKAEYISGGSSSGSASVVARGLVPFALGTDTAGSGRVPAGHNNLVGLKPTRGMVSNRGLVPACRTLDCITVLALSVDDADAALRAMGGFDASDAYSRQAPVRPASWPAKPVLGIPASPDWFGDIQAERVYTDALRRLETIGVELELIDFAPLFEVAALLYEGPWVGERYAAIEELMNAKPEVVHPVVRDIVQKATNFSAVDAYKAEYRRMALARKAEALMQGLDGLLVPTAPSIYTIEQLLAEPVTMNARMGVYTNFVNLLDFSAIALPAGMRADGLPAGITLIAPAWHEARLIAFGRRWQAAAPWKRGASQQELPPVDVPAAPSLDGHVIVAVVGAHLSGMPLNGQLSERGATLLESTHTSAAYRLYALPGTVPPKPGMLRTGEGAPIAVELWAMPVERYGSFVALIPSPLGIGSLDLIDGRTVQGFICESWATRGAEDITALGGWRAYVARKN
>NZ_CP013006.1|WP_033836978.1|5157030_5160678_-|urea-carboxylase
MFKKILIANRGEIAVRIARTLKKMGVTSVAVYSDADHDSLHVSVADEAVALNSGGSSSAAETYLRGDRILEIARKTGAGAVIPGYGFLSENTTFAEQCAEAGVVFVGPTPEQVRRFGLKHTARAIAEAAGVPLTPGTGLLQSLDDAKDAAQRIGYPVMLKSTAGGGGIGLSRCDNAAELATAYDSVQRLGQNFFKDSGVFIEGFVANARHVEVQIFGDGKGRVVALGERDCSLQRRHQKVVEETPAPHLPDATRAALLHAAVKLGEAVNYVSAGTVEFIYDAARDAFYFLEVNTRLQVEHPITEAVTGLDLVEWMVRIAAGEPPSFDDLPTPRGTAIEVRVYAENPVRGFQPAPGILTDVQFPEDVRVDTWVQTGTEVSANYDPLIAKVIAYGAHREEARQKLLMALELTRLHGSATNLDYLRSILQSREFSAGTVSTLLLDRYDYVSPVVEVLESGTYTTVQDYPGRTGYWDIGVPPSGPMDDYAFRLANRIVGNHESAAGLECTLQGPTLKFHGDAVIALTGAPAPATLDDGEPLPWWKPIAVRASQVLRIAKASSGCRSYIAIRRGIDVPEYLGSKSTFVLGQFGGHAGRTLRVGDVLPISRPEPAVCTTPAPACVPATPPHELVPSYGKHWDIGVLYGPHGAPDFFSEDSIARFFTTDYQVHYNSNRLGVRLVGPKPKWTRSDGGEAGLHPSNVHDCVYAIGSINFTGDTPVILTCDGPSLGGFVCPATIAKAELWKVGQVKPGDTIRFRRMGFDEALALEQAQDEAIRLLRPLPDLSARDLPAAPATVSECVLAELPAEGQRPAVAYRQAGDKYILLEYGTNVLDLRLRLRVHLLMEALKAAKLDGVHELSPGVRSVQIHYDSRVIAQSVLVERLIALETQLPGVEGLQVPSRIVHLPMAFEDSATLGAVTRYIETVKADAPWLPNNVDFIQRINGLSRREDVRTTVFEANYMVMGLGDVYLGAPCAVPLDPRHRLLTSKYNPARTFTAEGTVGIGGVYMCIYGMDSPGGYQLVGRTVPIWNKFLRNRQFGAEPWLLRFFDRVRFYPVTEVELDQFRADFRAGRTHIKVEDAVFDLAEHERLLAQDASSIEAFRERQQTAYATEVALWQNDPKVEAVEDAEEAVMQAVDGSAVVADMWGNVWKVLVDVGQEVQIGEPLVILEAMKMEFQVAASQAGTIAALHCKAGKPVAAGDALVVIRPHPLAATVTYA
>NZ_CP013006.1|WP_089504418.1|5155363_5156583_+|IS3-family-transposase
MRKSPKFSPEVQERAVRMVLEHQGEHGSQWAAIESIAGKMGCTTETLRRWVRQAERDQGKRPGVTSQEQARIKVLERENRELRQANEILRKASAYFCPGGARPPVQAMTGFIDEHRARYGVEPICRVLPIAPSTYYTHAARQADPELQPNRWWRDRAMEAEVRRVWDENKQVYGVRKVWKQLCREGYRVARCTVARLMKRLGLRGVVRGKVVKTTHSDKAVPCPRDQVNRQFRADRPNALWVSDFTYVSTWAGFVYVAFVIDVYARRIVGWKVSGSARTDFVLDALEQALHARRPTRGGLIHHSDRGVQYVSIRYTERLAEAGIEPSVGSVGDSYDNALAETINGLYKAEVIHRRSWRNLQDVELATLEWVGWFNHKRLLGPIGDIPPAEAEANYYQQTREIAMAA
>NZ_CP013006.1|WP_180324556.1|5154079_5155141_-|RluA-family-pseudouridine-synthase
MRRHRVAAHRFAHAEAGHCSDRPMLQCCMQSPTACHALPHRALPCCTLDPVAISAMPDAPRTHDGTPASRFQLPAGPWVSVFDALCACFPAIAAERWRNRFERGLVRDANDQALALSAPYRVGADIRYFREVADEPVIPYVETVVHADAQLVVACKPHFLPVAPAGAYVRETLLTRLVRRLDNPALVPLHRIDRETAGLVLFSANPATRGIYQALFRERRIRKHYLAVAAPLPELRFPYVHRSRLEPGEPFFRMREGVGEPNSETVIAVVARNSDTWTYRLEPVTGRKHQLRVHMAALGAPILHDRFYPALEAQRPDDPGRPLQLFAHTLAFDDPITGEPRRFTATTEPTKSA
>NZ_CP013006.1|WP_005922907.1|5153172_5153604_+|hypothetical-protein
MLALSTAALPALAQSDRQVVEDMLTRSANVCPGHSTERTTPTVKAVPVGALRVMLERGLVMCPDRRLDAAAPAVFYGRLGVFAWNPEVKAGSTVIAKQIDSMTRKDDYPTDTLVWDAKGSALTQQTVPMFEPRPGAAVLYKVR
>NZ_CP013006.1|WP_033836981.1|5175024_5178429_-|exodeoxyribonuclease-V-subunit-gamma
MHATSAPDFRLYPSNALDTLAALLAQELRRPMPGQPLLQPEVVLIPQVAMRRWLQSTLAAEHGVAANLEFLTPGEFVARALERNLGAADDDLDMATTQWRLYAALQSDLGSDAALAPLAGYLSDGDALKPWALAGELGSVFEKYQAWRRDWLLRWEAGADPDDPQARLWRSIAAGRQYRARRIGQYLDRYARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYWGDLQTLRQRRREDGAVQLFAEQVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIAAYADPLDSGRRTLADGGLGDSLLRRMQSDLFHRRGPAADARLPAVNLHDPSLQVHACHTRLRELQVLHDQLRALLDDARFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASEPLAEVFLALLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRNWLHAAGARWGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADEDIDGVAPWPQLEGSALAALDTLLRLLRVLERHQAALADAMTPVEWRERLLGLLEALIPATPTAPRAQRALDRLRTLIDQFARDAVRAEYAGKVPAEVVRAHFAAVLGDSDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADARDGSVREPSVLVSELLASAAQYHAASNALDTLVVRHPLQPFAAAAFGALGDDGADPRRFSYRRQWRPAVDSLVGQRQPLAPWVAGALPAEEIALPASMSIDALRRLLTDPAGQFLRHRLGMRLPDPAGEDSDLEPLLAPTRGLDQYGLQQQVFEAALAGDTEGLYERLRARALLPSGPLGRRQLDERVAQLRPYADAFRQWRGESPAQSRRLQVQIGEIELHGRVPGWYASGVGRVQVGALSGRSAIRHGLEWLLLRAAGEHAPYVRFFEHDDGLGPHPIDAQPLSQTQAHTALAELLQLYRQGLQTPLAFAPYSSWKYHQAARGGDLDKAIKEAAGQWQSGFGWSESHSPELRLVTRGRDPFADAQRFAAFATTSHRVYALLEQGNTGAPLETERVIDSWRHWHGAREDAE
>NZ_CP013006.1|WP_033836982.1|5178978_5179218_-|hypothetical-protein
MEVLTLEHVAGSVNETFATALNEGEVPFVLVEARPLQHARNSQRAPFSLLFRNVSAFLFPQQTYQMRHARISRAVAMRS
>NZ_CP013006.1|WP_005922888.1|5179600_5180395_+|ATP-binding-cassette-domain-containing-protein
MTASASPVVQLSGVRIDRGGRTILRDVSLEVPRGSITAVLGPSGSGKSTMLAALTGELRPVAGTVTLFGNPIPTGSRALLEMRRNVGVLLQGNGLLTDLSVAENVALPLRTHTRLPAAVLQRLVQMKLHAVGLLAAADAWPRELSGGMARRVALARALALDPPLMIYDEPLTGLDPIASGVIMSLIQRLNDSLGLTSIIVSHHVHETLPICEQAVVIANGGIVFAGTPAQLQDSTDPLVQQFLHGQPDGPIAFDAAPRRDRSAA
>NZ_CP013006.1|WP_003482308.1|5180394_5181144_+|ABC-transporter-permease
MAFADSIRAFGRAGLFSLTVLRGSLPTRDFIAELVREIYKVGARSLPIIAVGGAFVGLVLTLQGYRTLTTYGASDALSTLLGLSLYRELAPVLTALLFIGRAGSSIAAELGLMRATDQIKALELMAIDPVAKAVAPRFWAAVLTVPLLTGVFCSLAITGGYFEAVHVLGIDNGTFWSGLSNSVDFWDDFGVAMLKSAIFGGTAALVAAYVGFHAEPTIEGTSVATTRAVVNASLLVLMFNFVLSAMLFR
>NZ_CP013006.1|WP_005912377.1|5181155_5181701_+|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD
MAMRGPRLEFAVGAFLLLTLASLLVLAVASTNQRWGFGSSQYTLTARFSQIGQLRAQAPVKIGGVTIGKVADISLDPTKFDSIVTLSLDTKYKDLPADTSAGIFTSGLLGESYIGLQPGGDPDTLKPGDEIGFTQPAVDLLQLVGKYMFSGGGGGSNAPAAANGQAPAPAQTAPPSTEPHQ
>NZ_CP013006.1|WP_003482305.1|5181697_5182360_+|ABC-transporter-substrate-binding-protein
MKTTVLSAVLASTLLVCAPATVLAQPAAASAPAQGAATKTVIDSSTRILSTLDQRRAEFRSNPAALRQFINGELNKAFDRDYSARLVLGVHGRGASDADVKLFADALADNLMQRYGTALLNFEGKPTFRAKSESALPGNRGVKVSTDLLRAGNDPTPVDYLMRNTGGQWKIFDVMIEGISYVQTFKTQFDGPLREKGIAKVAAELRSGNLQVGAAPANGN
>NZ_CP013006.1|WP_011052905.1|5182349_5182640_+|STAS-domain-containing-protein
MATNTVQRMGDTLVITGVLDRAAVTAAWPQAIAQLDGARALDLSGVQRLDSAGVAMLAELAARLRQAGSGEVVGEASGLDELRAAYRLSPTLDFQA
>NZ_CP013006.1|WP_003482301.1|5182650_5183706_+|VacJ-family-lipoprotein
MTQFRSLPLLASLLLGACASQVPKSAPPSGGTAIAPAADAPVRDDAGVTAQPAASGMAAPDALPASAAAPADPQAAAGADTAAAGAPTDAESDFDALYGPTTSQASANGTPAQPGAAPAYDPWERYNRGMHRFNMAVDRGVARPLATAYTKVVPSPARLGVTNFFDNLGTPLTMVNQLLQGHPVHAMQSLGRFVMNSTLGVAGLFDPASAAGIPRRSEDFGQTLGAWGWRNSRYFELPLFGPRTVRDTFGLAGDIPLSWIRQVDDGGTRFALQGLQLVDTRAQLMSLDSLRDQAPDEYALTRDAWMQRRNYQITRDLRSHREKNNELPEYLRDDKDNTVPGNAMPIPNWVR
>NZ_CP013006.1|WP_005931670.1|5183840_5184221_-|hypothetical-protein
MAESAPALAVLLQSLTPDEVHFIAQRDDGQDAERHSQALASVVARGGRFEQGEEWYPYEVVELGAHTLVRGHAREFAICTLLVIAAVADGFDLSTTLADKFQDRADDYAKLPPDLQQAILAAYAAT
>NZ_CP013006.1|WP_005912384.1|5184224_5184770_-|glutathione-peroxidase
MSQTLYDIPVTRIDGQPTTLADYRGKVLLVVNVASKCGLTPQYEGLEALYRDKRAQGLEVLAFPANDFNGQEPGSEAEIAQFCQLTYDVTFPMFAKIAVTGDQAHPLYGALTSTHPHTTGDGPMREKLAGYGIAPNPAPGVVWNFEKFLIGRDGKIIDRFAPDIPADDARLRQAIDTALAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013006_5	5.1\|5174724\|26\|NZ_CP013006\|CRISPRCasFinder	5174724-5174749	26	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	281142-281167	4	0.846
NZ_CP013006_5	5.1\|5174724\|26\|NZ_CP013006\|CRISPRCasFinder	5174724-5174749	26	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	209772-209797	4	0.846
NZ_CP013006_1	1.5\|42527\|31\|NZ_CP013006\|CRISPRCasFinder	42527-42557	31	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	934481-934511	6	0.806
NZ_CP013006_1	1.7\|42638\|34\|NZ_CP013006\|CRISPRCasFinder	42638-42671	34	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1614842-1614875	6	0.824
NZ_CP013006_1	1.5\|42527\|31\|NZ_CP013006\|CRISPRCasFinder	42527-42557	31	NZ_CP015279	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence	150331-150361	7	0.774
NZ_CP013006_1	1.5\|42527\|31\|NZ_CP013006\|CRISPRCasFinder	42527-42557	31	NZ_CP015280	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence	81610-81640	7	0.774
NZ_CP013006_1	1.7\|42638\|34\|NZ_CP013006\|CRISPRCasFinder	42638-42671	34	MH271303	Microbacterium phage MementoMori, complete genome	20739-20772	8	0.765
NZ_CP013006_1	1.7\|42638\|34\|NZ_CP013006\|CRISPRCasFinder	42638-42671	34	MN813682	Microbacterium phage Matzah, complete genome	21015-21048	8	0.765
NZ_CP013006_1	1.7\|42638\|34\|NZ_CP013006\|CRISPRCasFinder	42638-42671	34	MK937591	Microbacterium phage Cinna, complete genome	21039-21072	8	0.765
NZ_CP013006_1	1.8\|42695\|31\|NZ_CP013006\|CRISPRCasFinder	42695-42725	31	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	380719-380749	8	0.742
NZ_CP013006_1	1.7\|42638\|34\|NZ_CP013006\|CRISPRCasFinder	42638-42671	34	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	72444-72477	11	0.676
NZ_CP013006_1	1.7\|42638\|34\|NZ_CP013006\|CRISPRCasFinder	42638-42671	34	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	22147-22180	12	0.647
NZ_CP013006_1	1.7\|42638\|34\|NZ_CP013006\|CRISPRCasFinder	42638-42671	34	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	116465-116498	12	0.647

1. spacer 5.1|5174724|26|NZ_CP013006|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 4, identity: 0.846

gccgatgtggcgtcggacgactcgcc	CRISPR spacer
gccgatgcggcgtcggacgacgcgaa	Protospacer
*******.************* **

2. spacer 5.1|5174724|26|NZ_CP013006|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 4, identity: 0.846

gccgatgtggcgtcggacgactcgcc	CRISPR spacer
accgacgtggcgtcggacgcctcgac	Protospacer
.****.************* **** *

3. spacer 1.5|42527|31|NZ_CP013006|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.806

cgcatcggcgacaacgcgcgtaccg-gtggcg	CRISPR spacer
cgcagcggcgacaacgcgcgcaccatcttgc-	Protospacer
**** ***************.***.  * **

4. spacer 1.7|42638|34|NZ_CP013006|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

ctcgccgagcgcggcagccagatcagtggcggcg-	CRISPR spacer
ttcgtcgagcgcggcagccagatca-tggggctgg	Protospacer
.***.******************** *** * .*

5. spacer 1.5|42527|31|NZ_CP013006|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

6. spacer 1.5|42527|31|NZ_CP013006|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

7. spacer 1.7|42638|34|NZ_CP013006|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

8. spacer 1.7|42638|34|NZ_CP013006|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

9. spacer 1.7|42638|34|NZ_CP013006|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

10. spacer 1.8|42695|31|NZ_CP013006|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 8, identity: 0.742

gggctggtgggaaccgagctcggcaagggca	CRISPR spacer
ctgctggtgggaatcgagttcggcaccgcaa	Protospacer
  ***********.****.******  *  *

11. spacer 1.7|42638|34|NZ_CP013006|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
ctcggcgagcgcggcggccagatcctcctccatc	Protospacer
**** **********.********  .  * ..

12. spacer 1.7|42638|34|NZ_CP013006|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

13. spacer 1.7|42638|34|NZ_CP013006|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7532 : 37780

Burkholderia_virus(50.0%)

integrase,protease,transposase

attL 1920:1933|attR 38159:38172

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1920:1933	attL	NA	NA	NA	NA
WP_005927184.1\|7532_8369_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_005912440.1\|8552_9359_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_033836099.1\|9636_10830_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_033836101.1\|10982_11648_+	TonB family protein	NA	NA	NA	NA
WP_005912445.1\|11733_12495_+	TonB-system energizer ExbB	NA	NA	NA	NA
WP_005912447.1\|12541_12964_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_005912449.1\|12967_13381_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_003482190.1\|13642_14410_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_005912451.1\|14417_14687_-	hypothetical protein	NA	NA	NA	NA
WP_005912453.1\|14761_16222_-	cardiolipin synthase	NA	NA	NA	NA
WP_089504397.1\|16468_17555_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_033836104.1\|17940_18435_-	hypothetical protein	NA	NA	NA	NA
WP_033836105.1\|18477_18984_-	hypothetical protein	NA	NA	NA	NA
WP_033836106.1\|19821_20472_-	hypothetical protein	NA	NA	NA	NA
WP_033836107.1\|20511_24486_-	hypothetical protein	NA	NA	NA	NA
WP_033836989.1\|24518_25178_-	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_033836108.1\|25424_25904_-	DNA repair protein RadC	NA	NA	NA	NA
WP_031422187.1\|26307_26532_-	hypothetical protein	NA	NA	NA	NA
WP_089504564.1\|26834_28054_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.7e-97	66.7
WP_078565759.1\|29211_30423_-	Abi family protein	A3QSC6	Clostridium_virus	7.9e-26	30.9
WP_089504399.1\|31303_32391_-\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_078565841.1\|33332_33818_+	hypothetical protein	NA	NA	NA	NA
WP_078565843.1\|33818_34268_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_033836110.1\|34291_35758_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_003482177.1\|37087_37780_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
38159:38172	attR	NA	NA	NA	NA

DBSCAN-SWA_2

867140 : 878910

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005913435.1\|867140_868097_-	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	1.8e-25	27.1
WP_005920793.1\|868077_868806_-	hypothetical protein	NA	NA	NA	NA
WP_033836832.1\|868969_869914_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_005913446.1\|869913_870660_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_005913448.1\|870880_871936_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-82	47.1
WP_005913450.1\|871987_872875_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.5e-94	57.5
WP_005913451.1\|872871_873429_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.1e-43	48.9
WP_005913452.1\|873425_874325_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.1e-27	36.2
WP_005913453.1\|874664_875831_+	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	4.7e-116	58.1
WP_005913454.1\|876113_877517_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-47	30.0
WP_005913455.1\|877563_878910_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	7.5e-33	27.1

DBSCAN-SWA_3

1143515 : 1194058

Stenotrophomonas_phage(38.1%)

portal,head,transposase,tail,holin,capsid,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033836274.1\|1143515_1145597_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_011050659.1\|1146198_1146384_+	S46 family peptidase	NA	NA	NA	NA
WP_005915881.1\|1146477_1147122_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_125825479.1\|1147141_1147720_+	hypothetical protein	NA	NA	NA	NA
WP_005915883.1\|1147851_1149150_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_005915887.1\|1150466_1151213_+	CvpA family protein	NA	NA	NA	NA
WP_003483730.1\|1151243_1152710_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.1e-85	39.9
WP_089504397.1\|1153148_1154236_-\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_005915893.1\|1155519_1156773_+\|protease	zinc-dependent metalloprotease	NA	NA	NA	NA
WP_005922253.1\|1156907_1157327_+	hypothetical protein	NA	NA	NA	NA
WP_033836277.1\|1157511_1158255_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_005915899.1\|1158739_1159282_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_005915903.1\|1160622_1162143_-	exopolyphosphatase	NA	NA	NA	NA
WP_003483747.1\|1162321_1164424_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_033836278.1\|1164536_1165865_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	6.4e-29	33.3
WP_003483753.1\|1165937_1166627_-	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	1.0e-33	35.7
WP_005915909.1\|1166809_1168516_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_005915911.1\|1168605_1168914_+	glutaredoxin 3	A0A2L0UZG6	Agrobacterium_phage	3.6e-07	43.2
WP_003483760.1\|1168910_1169306_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_003483762.1\|1169532_1170540_+	isocitrate dehydrogenase	NA	NA	NA	NA
WP_005915913.1\|1170678_1171440_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_053329458.1\|1172148_1172625_+	hypothetical protein	NA	NA	NA	NA
WP_089504418.1\|1173401_1174620_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.7e-98	67.0
WP_089504397.1\|1175089_1176177_-\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_150130663.1\|1177564_1177885_+	hypothetical protein	NA	NA	NA	NA
WP_005917750.1\|1177902_1178355_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	3.6e-40	58.8
WP_005917748.1\|1178342_1178762_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	7.4e-40	63.7
WP_033836291.1\|1178758_1179247_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	1.3e-27	50.0
WP_005917743.1\|1179246_1179885_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	3.9e-48	60.4
WP_005917740.1\|1179884_1180160_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	5.1e-21	58.6
WP_005917737.1\|1180152_1180509_-	membrane protein	V9IQG9	Stenotrophomonas_phage	5.9e-22	56.1
WP_005917735.1\|1180513_1180723_-\|tail	tail protein X	K4PAW7	Burkholderia_phage	7.0e-15	59.4
WP_005917732.1\|1180722_1181190_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	4.1e-31	49.7
WP_005917729.1\|1181286_1182006_-\|terminase	phage-related terminase	Q9ZXM2	Pseudomonas_virus	5.0e-68	62.1
WP_005917726.1\|1182009_1183029_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	3.9e-135	70.8
WP_005917723.1\|1183087_1183930_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	8.4e-67	52.7
WP_190276488.1\|1184072_1185836_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	7.7e-272	76.7
WP_033836293.1\|1185835_1186858_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	5.3e-140	72.1
WP_082333569.1\|1186883_1187090_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	9.3e-12	55.0
WP_089504397.1\|1187123_1188211_-\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_125825507.1\|1188418_1188613_-	hypothetical protein	NA	NA	NA	NA
WP_005913860.1\|1188831_1190100_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_005913863.1\|1190634_1191927_+	trigger factor	NA	NA	NA	NA
WP_002806026.1\|1192019_1192646_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.0e-56	57.4
WP_003483788.1\|1192771_1194058_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.3e-137	59.9

DBSCAN-SWA_4

1953272 : 1964050

Micromonas_pusilla_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005915030.1\|1953272_1954949_+	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	1.9e-41	29.4
WP_005915033.1\|1955034_1955676_+	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
WP_003481871.1\|1955848_1956883_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	5.1e-114	61.3
WP_003481873.1\|1957201_1957690_+	recombination regulator RecX	NA	NA	NA	NA
WP_005915037.1\|1957791_1960440_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.3e-85	40.0
WP_003481884.1\|1960579_1960792_+	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.3e-13	76.5
WP_033836411.1\|1962091_1964050_+	PAS domain S-box protein	A0A2H4J162	uncultured_Caudovirales_phage	9.6e-13	42.8

DBSCAN-SWA_5

2120337 : 2207692

uncultured_Caudovirales_phage(47.62%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089504421.1\|2120337_2121439_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.1e-45	41.6
WP_033481846.1\|2121530_2122478_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_100225289.1\|2122720_2123845_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	9.4e-05	39.7
WP_005914907.1\|2124050_2125568_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	7.2e-85	39.7
WP_005914908.1\|2125709_2126846_+	two-component system response regulator	NA	NA	NA	NA
WP_033481848.1\|2126850_2129049_+	response regulator	A0A1V0SGX0	Hokovirus	5.8e-43	31.5
WP_005914911.1\|2129104_2129974_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_005914912.1\|2130157_2131840_-	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.2e-33	26.8
WP_005914913.1\|2131937_2132387_+	hypothetical protein	NA	NA	NA	NA
WP_078565747.1\|2132770_2135542_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_003486316.1\|2135689_2135938_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_003486318.1\|2135934_2136345_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_005914916.1\|2136396_2138988_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_033481849.1\|2139182_2140028_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_033479766.1\|2140255_2142541_-	EAL domain-containing protein	NA	NA	NA	NA
WP_005914919.1\|2142619_2143696_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_003486330.1\|2143692_2144289_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
WP_005914920.1\|2144291_2145152_-	chemotaxis protein CheR	NA	NA	NA	NA
WP_005914921.1\|2145399_2147781_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-10	40.8
WP_003486337.1\|2147864_2148248_-	hypothetical protein	NA	NA	NA	NA
WP_003486339.1\|2148702_2149185_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_003486341.1\|2149320_2150106_-	flagellar brake protein	NA	NA	NA	NA
WP_033836425.1\|2150718_2153385_-	Cache 3/Cache 2 fusion domain-containing protein	A0A2K9L2B4	Tupanvirus	1.1e-11	44.6
WP_005914925.1\|2154039_2156301_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-12	40.6
WP_033836426.1\|2156715_2158977_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.6e-11	46.7
WP_033836427.1\|2159559_2162034_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	6.6e-11	50.6
WP_087943923.1\|2164489_2165576_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_005914928.1\|2166221_2168465_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.2e-12	38.8
WP_033836428.1\|2168916_2171175_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-08	39.4
WP_033836429.1\|2171395_2173768_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.3e-11	56.3
WP_005914931.1\|2173781_2174543_-	transporter	NA	NA	NA	NA
WP_033481852.1\|2174840_2177630_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-10	50.6
WP_033836430.1\|2177701_2179879_-	cache domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-09	62.1
WP_125825496.1\|2180115_2180343_+	hypothetical protein	NA	NA	NA	NA
WP_005914934.1\|2180409_2180943_-	hypothetical protein	NA	NA	NA	NA
WP_033836431.1\|2181261_2183553_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.7e-09	63.2
WP_033836432.1\|2183791_2185798_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_002806565.1\|2185831_2186197_-	response regulator	W8CYM9	Bacillus_phage	2.7e-14	39.3
WP_003489692.1\|2186193_2186502_-	STAS domain-containing protein	NA	NA	NA	NA
WP_033836434.1\|2186604_2187879_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_003489696.1\|2187875_2188658_-	ParA family protein	Q8JL10	Natrialba_phage	5.9e-14	37.1
WP_005914939.1\|2188659_2189634_-	flagellar motor protein MotD	NA	NA	NA	NA
WP_005914940.1\|2189640_2190381_-	flagellar motor protein	NA	NA	NA	NA
WP_180324591.1\|2191585_2194741_+	TonB-dependent receptor	NA	NA	NA	NA
WP_078565751.1\|2195441_2196533_+	AAA family ATPase	Q7M293	Enterobacteria_phage	8.5e-19	25.9
WP_157733725.1\|2196655_2197285_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_089504397.1\|2198428_2199515_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_078565967.1\|2199717_2200416_+	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_076605031.1\|2200408_2201203_+	hypothetical protein	NA	NA	NA	NA
WP_015472058.1\|2201147_2202152_+	hypothetical protein	NA	NA	NA	NA
WP_089504397.1\|2202595_2203682_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_005923946.1\|2204604_2204973_+	hypothetical protein	NA	NA	NA	NA
WP_089504421.1\|2205110_2206213_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.1e-45	41.6
WP_087942126.1\|2206535_2207692_-\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-39	37.5

DBSCAN-SWA_6

2287309 : 2345317

uncultured_Mediterranean_phage(12.5%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005914460.1\|2287309_2288446_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_005914461.1\|2288442_2288901_-	NUDIX hydrolase	NA	NA	NA	NA
WP_005914463.1\|2289151_2289472_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.0e-12	45.7
WP_005914464.1\|2289614_2291897_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.9e-175	44.9
WP_002813418.1\|2292179_2292398_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_005914466.1\|2292478_2293228_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_005914467.1\|2293490_2294609_-	N-acetyltransferase	NA	NA	NA	NA
WP_003482910.1\|2294666_2295635_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.5e-64	44.5
WP_003482906.1\|2295918_2298276_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	2.5e-84	45.8
WP_033479527.1\|2298447_2300355_+	DUF3857 domain-containing protein	NA	NA	NA	NA
WP_015472033.1\|2300419_2301091_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_033837056.1\|2301212_2305448_-	type III effector	NA	NA	NA	NA
WP_003482897.1\|2305617_2306991_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.4e-74	38.2
WP_003482896.1\|2307169_2307571_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_003482893.1\|2307887_2309093_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_005914474.1\|2309249_2311622_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_003482890.1\|2311646_2312279_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_005914476.1\|2312497_2312923_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.3e-18	40.9
WP_016848747.1\|2312965_2314147_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_003482886.1\|2314157_2314946_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_005914478.1\|2314942_2315803_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005914479.1\|2315873_2316512_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005914480.1\|2316511_2317729_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_003482878.1\|2317739_2319137_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_005914481.1\|2319447_2320668_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_190276415.1\|2321019_2322225_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_089504397.1\|2324695_2325782_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_003482865.1\|2326353_2326569_+	hypothetical protein	NA	NA	NA	NA
WP_005914486.1\|2326948_2327521_+	DUF4142 domain-containing protein	NA	NA	NA	NA
WP_005914487.1\|2327524_2328055_+	hypothetical protein	NA	NA	NA	NA
WP_005914488.1\|2328068_2329238_+	glutathione-dependent formaldehyde dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	1.9e-08	28.5
WP_089504599.1\|2330264_2331341_-	avirulence protein	NA	NA	NA	NA
WP_005918020.1\|2332643_2332916_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_005934416.1\|2333104_2333305_+\|transposase	transposase	NA	NA	NA	NA
WP_078514874.1\|2333425_2333977_-	type III effector	NA	NA	NA	NA
WP_087943923.1\|2334397_2335485_-\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_154138535.1\|2335733_2335910_+	hypothetical protein	NA	NA	NA	NA
WP_005918028.1\|2335922_2336114_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_033455135.1\|2336130_2337033_-	hypothetical protein	NA	NA	NA	NA
WP_033480615.1\|2337032_2338265_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	4.7e-50	33.2
WP_180324701.1\|2339271_2339595_-	hypothetical protein	NA	NA	NA	NA
WP_033836504.1\|2339857_2340721_-	hypothetical protein	NA	NA	NA	NA
WP_078566048.1\|2342264_2344133_-	AAA family ATPase	NA	NA	NA	NA
WP_089504397.1\|2344230_2345317_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2353245 : 2429231

Burkholderia_virus(20.0%)

integrase,transposase

attL 2354516:2354575|attR 2381017:2381142

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089504418.1\|2353245_2354465_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.7e-98	67.0
2354516:2354575	attL	NA	NA	NA	NA
WP_005917852.1\|2355850_2356111_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_011053002.1\|2356107_2356509_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_005917846.1\|2356533_2356797_+	hypothetical protein	NA	NA	NA	NA
WP_033836458.1\|2356803_2357991_+	zeta toxin family protein	NA	NA	NA	NA
WP_015472949.1\|2358270_2359497_+	plasmid replication initiator protein	NA	NA	NA	NA
WP_087943923.1\|2359751_2360838_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_033836456.1\|2361314_2364311_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.9e-85	28.0
WP_005923972.1\|2364319_2365594_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_033836455.1\|2365777_2366833_+	DNA-binding protein	NA	NA	NA	NA
WP_078514874.1\|2367256_2367808_+	type III effector	NA	NA	NA	NA
WP_005934416.1\|2367928_2368129_-\|transposase	transposase	NA	NA	NA	NA
WP_005918020.1\|2368317_2368590_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_005923977.1\|2368583_2368886_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_033837060.1\|2369491_2370313_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_033836454.1\|2370309_2370624_-	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_089504518.1\|2372022_2373125_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.0e-45	41.6
WP_005918046.1\|2373829_2376334_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_005918049.1\|2376724_2377696_+\|transposase	IS1595-like element IS1595 family transposase	NA	NA	NA	NA
WP_089504583.1\|2379938_2382821_-	TAL effector repeat-containing protein	NA	NA	NA	NA
2381017:2381142	attR	NA	NA	NA	NA
WP_016848755.1\|2383303_2383456_-	hypothetical protein	NA	NA	NA	NA
WP_005916091.1\|2383454_2384447_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_005916089.1\|2384483_2384759_-	hypothetical protein	NA	NA	NA	NA
WP_033481925.1\|2384939_2386214_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_033836495.1\|2386251_2386821_+	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA
WP_003482846.1\|2386804_2387167_+	hypothetical protein	NA	NA	NA	NA
WP_005916080.1\|2387311_2388289_-	siroheme synthase	NA	NA	NA	NA
WP_033836494.1\|2390676_2390934_+	stress-induced protein	NA	NA	NA	NA
WP_005921275.1\|2391581_2392091_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_005916065.1\|2392192_2393113_+	M14 family metallocarboxypeptidase	NA	NA	NA	NA
WP_005916063.1\|2393516_2394215_+	DUF1349 domain-containing protein	NA	NA	NA	NA
WP_005916060.1\|2394340_2396152_-	phosphodiesterase	NA	NA	NA	NA
WP_005916057.1\|2396896_2407090_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA
WP_005916054.1\|2407392_2408004_-	response regulator transcription factor	NA	NA	NA	NA
WP_016851584.1\|2408000_2409023_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_005916049.1\|2409141_2410626_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_005916046.1\|2410622_2413715_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_005916043.1\|2413707_2414823_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_033836493.1\|2415311_2418047_-	S8 family serine peptidase	NA	NA	NA	NA
WP_005916037.1\|2419147_2419423_+	hypothetical protein	NA	NA	NA	NA
WP_005916034.1\|2419638_2420661_+	histidine kinase	Q9EYF3	Enterobacteria_phage	1.0e-10	29.2
WP_005916031.1\|2420657_2421362_+	response regulator transcription factor	NA	NA	NA	NA
WP_005921257.1\|2421507_2422881_-	serine hydrolase	A0A0Y0A2S9	Mycobacterium_phage	2.5e-15	26.3
WP_005916026.1\|2423297_2423714_+	hypothetical protein	NA	NA	NA	NA
WP_033836492.1\|2423710_2425024_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_033836491.1\|2425266_2426301_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_005916019.1\|2426626_2426905_-	hypothetical protein	NA	NA	NA	NA
WP_005916016.1\|2427043_2427466_-	DedA family protein	NA	NA	NA	NA
WP_089504397.1\|2428144_2429231_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

2802265 : 2851680

Acinetobacter_phage(20.0%)

integrase,protease,tRNA,transposase

attL 2825191:2825235|attR 2839340:2839384

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003486023.1\|2802265_2803144_-\|protease	protease HtpX	NA	NA	NA	NA
WP_005913047.1\|2803241_2804141_+\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_003486018.1\|2804222_2804963_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA
WP_003486016.1\|2805122_2805698_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA
WP_033836583.1\|2805884_2806859_-	TraB/GumN family protein	NA	NA	NA	NA
WP_005913042.1\|2806892_2807828_-	DUF1684 domain-containing protein	NA	NA	NA	NA
WP_033836584.1\|2807827_2809705_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	9.9e-84	35.5
WP_050554787.1\|2809843_2811553_-	N-acetylmuramoyl-L-alanine amidase	A6XML1	Bacillus_virus	1.5e-14	28.4
WP_005913023.1\|2811623_2812124_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_005913021.1\|2812120_2813608_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_005913020.1\|2813632_2814700_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_033836585.1\|2814844_2816182_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.5e-38	36.2
WP_003485994.1\|2816451_2817714_-	virulence factor	NA	NA	NA	NA
WP_089504531.1\|2818223_2819969_-	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	8.2e-24	33.5
WP_003485988.1\|2820339_2821431_+	ribonuclease D	NA	NA	NA	NA
WP_005913013.1\|2821635_2824254_-	DNA ligase D	A0A1X9SH33	Bradyrhizobium_phage	6.8e-14	30.7
WP_033836587.1\|2824269_2824446_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_005913011.1\|2824665_2825067_+	H-NS histone family protein	NA	NA	NA	NA
2825191:2825235	attL	NA	NA	NA	NA
WP_033836588.1\|2825354_2826446_+\|integrase	site-specific integrase	A0A0A1I5U0	Burkholderia_phage	1.0e-48	36.3
WP_087942126.1\|2829075_2830231_+\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-39	37.5
WP_015463309.1\|2835128_2835308_-	hypothetical protein	NA	NA	NA	NA
WP_099522003.1\|2835578_2835899_-	hypothetical protein	NA	NA	NA	NA
WP_033836591.1\|2835895_2836186_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004541313.1\|2836173_2836452_-	CopG family ribbon-helix-helix protein	NA	NA	NA	NA
WP_108350140.1\|2836936_2837098_-	hypothetical protein	NA	NA	NA	NA
WP_087942126.1\|2837173_2838329_+\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-39	37.5
WP_087943923.1\|2839571_2840658_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
2839340:2839384	attR	NA	NA	NA	NA
WP_005913009.1\|2840745_2840913_+	hypothetical protein	NA	NA	NA	NA
WP_179119000.1\|2841204_2842311_+	diguanylate cyclase	NA	NA	NA	NA
WP_003485975.1\|2842353_2842863_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_078566317.1\|2842874_2844533_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-09	26.9
WP_179119001.1\|2844843_2845449_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_033836594.1\|2845388_2849783_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_016850001.1\|2850144_2850525_+	DUF3301 domain-containing protein	NA	NA	NA	NA
WP_033836595.1\|2850732_2851050_-	hypothetical protein	NA	NA	NA	NA
WP_005915263.1\|2851239_2851680_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	7.1e-25	46.0

DBSCAN-SWA_9

3141749 : 3210224

Acinetobacter_phage(13.33%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003485510.1\|3141749_3142523_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_005914300.1\|3142697_3143105_-	VOC family protein	NA	NA	NA	NA
WP_005914301.1\|3143101_3145033_-	FimV protein	NA	NA	NA	NA
WP_033836647.1\|3145588_3146614_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_033836648.1\|3146697_3147771_-	D-glycerate dehydrogenase	M1NSB9	Streptococcus_phage	4.3e-15	28.0
WP_008577522.1\|3147763_3148867_-	chorismate synthase	A0A291AU41	Pandoravirus	7.1e-74	41.0
WP_033836649.1\|3148877_3149804_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_008577518.1\|3149884_3150535_+	SCO family protein	NA	NA	NA	NA
WP_005914308.1\|3150531_3151374_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_089504397.1\|3151676_3152764_-\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_087959283.1\|3152845_3154071_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-120	76.3
WP_005914309.1\|3154294_3155878_-	transglycosylase SLT domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	5.5e-11	31.5
WP_005914310.1\|3156170_3157676_+	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	4.7e-84	45.2
WP_005914311.1\|3157729_3158350_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_005914312.1\|3158699_3159974_+	DUF4013 domain-containing protein	NA	NA	NA	NA
WP_005914314.1\|3160111_3161578_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_033836651.1\|3161688_3162195_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_053329473.1\|3162516_3163917_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_005920208.1\|3164105_3164456_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005920206.1\|3164654_3164888_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_033837097.1\|3165213_3165528_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003490939.1\|3165649_3166660_+	ATP-binding protein	A0A0K1L651	Scale_drop_disease_virus	3.0e-10	28.1
WP_003490941.1\|3166802_3169358_+	S8 family peptidase	NA	NA	NA	NA
WP_108350130.1\|3169703_3170888_-	TIGR02679 family protein	NA	NA	NA	NA
WP_087942126.1\|3170955_3172111_+\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-39	37.5
WP_005913000.1\|3173525_3174188_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_005912999.1\|3174184_3174619_+	HIT family protein	NA	NA	NA	NA
WP_003486900.1\|3174646_3174814_+	hypothetical protein	NA	NA	NA	NA
WP_003486896.1\|3175394_3175580_+	hypothetical protein	NA	NA	NA	NA
WP_005912996.1\|3175735_3176305_-	dCTP deaminase	S5VM63	Pseudomonas_phage	4.1e-73	70.6
WP_005912994.1\|3176401_3177253_-	iron-sulfur cluster carrier protein ApbC	Q8JL10	Natrialba_phage	9.3e-05	27.0
WP_033836653.1\|3177589_3180580_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	7.0e-15	35.4
WP_033836654.1\|3180939_3184002_+	TonB-dependent receptor	NA	NA	NA	NA
WP_005912991.1\|3184113_3185709_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_033836655.1\|3186158_3188261_+	peptidase	A0A1V0SHG2	Klosneuvirus	2.6e-72	27.6
WP_005919446.1\|3188647_3190747_+	M13 family metallopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	2.7e-74	30.5
WP_003486881.1\|3190928_3192944_+	M13 family metallopeptidase	NA	NA	NA	NA
WP_003486879.1\|3193163_3193859_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_033479106.1\|3193899_3194307_-	MGMT family protein	NA	NA	NA	NA
WP_003486876.1\|3194778_3196149_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	4.9e-40	26.0
WP_033837100.1\|3196145_3197396_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005912977.1\|3197403_3198648_-	DUF418 domain-containing protein	NA	NA	NA	NA
WP_003486870.1\|3198883_3199363_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_003486869.1\|3199472_3200015_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	6.1e-18	39.3
WP_003486867.1\|3200124_3200874_+	C40 family peptidase	A0A0K2SUC1	Clostridium_phage	1.2e-19	38.5
WP_003486865.1\|3201081_3201573_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_005912975.1\|3201807_3202644_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005912974.1\|3202653_3203994_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_033836656.1\|3204136_3205840_+	alkaline phosphatase	NA	NA	NA	NA
WP_033837101.1\|3206209_3207511_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_033836658.1\|3207542_3207794_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_003486850.1\|3207795_3208671_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_033836659.1\|3209108_3210224_+\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_10

3770417 : 3841445

Leptospira_phage(14.29%)

integrase,tRNA,transposase

attL 3782476:3782493|attR 3829378:3829395

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089504397.1\|3770417_3771504_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_089504421.1\|3771568_3772671_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.1e-45	41.6
WP_005922310.1\|3772804_3773098_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA
WP_005917998.1\|3773200_3774535_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_003490678.1\|3774527_3775205_-	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	7.4e-05	27.4
WP_033479676.1\|3775230_3775707_-	hypothetical protein	NA	NA	NA	NA
WP_168950233.1\|3775884_3776802_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	6.2e-31	32.0
WP_005922313.1\|3777265_3779398_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_003490669.1\|3780030_3780423_-	H-NS histone family protein	NA	NA	NA	NA
WP_005918499.1\|3780513_3780906_-	hypothetical protein	NA	NA	NA	NA
WP_003490665.1\|3781016_3781676_-	thermonuclease family protein	NA	NA	NA	NA
WP_150130653.1\|3781894_3782080_+	hypothetical protein	NA	NA	NA	NA
WP_005918502.1\|3782147_3782396_+	hypothetical protein	NA	NA	NA	NA
3782476:3782493	attL	NA	NA	NA	NA
WP_033836750.1\|3782899_3783274_+	hypothetical protein	NA	NA	NA	NA
WP_033836751.1\|3783317_3784907_-	MobA/MobL family protein	NA	NA	NA	NA
WP_033836752.1\|3785165_3785492_+	hypothetical protein	NA	NA	NA	NA
WP_082333595.1\|3785674_3786025_+	HNH endonuclease	NA	NA	NA	NA
WP_033836753.1\|3786018_3786579_+	hypothetical protein	NA	NA	NA	NA
WP_053329496.1\|3787472_3787862_+	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	2.2e-14	51.9
WP_190276492.1\|3787872_3788499_-	hypothetical protein	NA	NA	NA	NA
WP_082333596.1\|3788563_3792448_-	hypothetical protein	NA	NA	NA	NA
WP_033837116.1\|3792485_3793124_-	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_082333597.1\|3793252_3794617_-	DNA double-strand break repair nuclease NurA	NA	NA	NA	NA
WP_033836758.1\|3794619_3796710_-	ATP-binding protein	NA	NA	NA	NA
WP_033836759.1\|3796723_3797614_-	DNA adenine methylase	NA	NA	NA	NA
WP_033836760.1\|3798098_3798578_-	DNA repair protein RadC	NA	NA	NA	NA
WP_033837117.1\|3798898_3801871_+	AAA family ATPase	A0A1B1IUG5	uncultured_Mediterranean_phage	8.5e-05	39.0
WP_033836761.1\|3801912_3802647_+	hypothetical protein	NA	NA	NA	NA
WP_150130666.1\|3802720_3803929_-	hypothetical protein	NA	NA	NA	NA
WP_082333615.1\|3804037_3804235_+\|transposase	transposase	NA	NA	NA	NA
WP_053329497.1\|3804844_3806236_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_033836765.1\|3806428_3808156_+	AAA family ATPase	NA	NA	NA	NA
WP_033836766.1\|3808145_3809564_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_033836767.1\|3809643_3810000_+	hypothetical protein	NA	NA	NA	NA
WP_033836768.1\|3810004_3810451_-	hypothetical protein	NA	NA	NA	NA
WP_033836769.1\|3810574_3810964_-	hypothetical protein	NA	NA	NA	NA
WP_089504602.1\|3810963_3811824_-	hypothetical protein	NA	NA	NA	NA
WP_033836770.1\|3811935_3812322_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_033836771.1\|3812412_3813546_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_033836772.1\|3813569_3815504_-	hypothetical protein	NA	NA	NA	NA
WP_033836773.1\|3815504_3816314_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_033836774.1\|3816313_3816988_-	VWA domain-containing protein	NA	NA	NA	NA
WP_033836775.1\|3817146_3817737_+	hypothetical protein	NA	NA	NA	NA
WP_143691901.1\|3818267_3818678_-	hypothetical protein	NA	NA	NA	NA
WP_089504590.1\|3818674_3822247_-	wall-associated protein	A0A2H4JHK7	uncultured_Caudovirales_phage	5.8e-08	34.4
WP_033836777.1\|3822243_3825057_-	RHS repeat protein	NA	NA	NA	NA
WP_150130667.1\|3826002_3826869_+	hypothetical protein	NA	NA	NA	NA
WP_150130668.1\|3827216_3827738_-	hypothetical protein	NA	NA	NA	NA
WP_033836778.1\|3827747_3829310_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_033836779.1\|3829569_3831354_-	autotransporter domain-containing esterase	NA	NA	NA	NA
3829378:3829395	attR	NA	NA	NA	NA
WP_003487182.1\|3831542_3831743_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_005914544.1\|3831792_3832587_+	thiazole synthase	NA	NA	NA	NA
WP_005914543.1\|3832825_3833584_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_005914542.1\|3833661_3835524_+	SLC13 family permease	NA	NA	NA	NA
WP_005914540.1\|3835584_3835926_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA
WP_005914539.1\|3836191_3836467_+	hypothetical protein	NA	NA	NA	NA
WP_003487203.1\|3837707_3838139_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_033836780.1\|3838262_3839681_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_089504418.1\|3840226_3841445_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.7e-98	67.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013006

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection