CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP020460	Lactobacillus sakei strain FAM18311 plasmid pFAM18311_1	0 crisprs	NA	0
NZ_CP020459	Lactobacillus sakei strain FAM18311 chromosome, complete genome	0 crisprs	cas3,csa3,DinG,DEDDh	5
NZ_CP020461	Lactobacillus sakei strain FAM18311 plasmid pFAM18311_2	0 crisprs	NA	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

530061 : 580364

Streptococcus_phage(23.08%)

bacteriocin,holin,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056948822.1\|530061_530436_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_016264738.1\|530573_531515_+	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_056948877.1\|531642_532470_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_076632193.1\|532487_533510_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_099712946.1\|533682_534030_+	hypothetical protein	NA	NA	NA	NA
WP_011374228.1\|534146_535067_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	4.4e-85	51.1
WP_076632192.1\|535222_536947_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	6.1e-181	54.8
WP_056948816.1\|537497_539501_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_076981500.1\|539510_542363_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.7e-306	54.9
WP_056948812.1\|542483_543020_+	hypothetical protein	NA	NA	NA	NA
WP_076632190.1\|543145_544030_+	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	8.4e-09	31.0
WP_076632189.1\|544026_545061_+	YvcK family protein	A1IMD5	Streptococcus_phage	3.4e-94	54.8
WP_076632188.1\|545063_546008_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.8e-52	39.0
WP_011374237.1\|546100_546556_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011374238.1\|546669_547194_-	DsbA family protein	NA	NA	NA	NA
WP_004265909.1\|547417_548002_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.3e-52	53.9
WP_157769669.1\|548544_549126_-	glycoside hydrolase family 73 protein	A0A0A7RUS8	Clostridium_phage	2.6e-22	43.3
WP_076632187.1\|549341_550301_+	nucleoside hydrolase	NA	NA	NA	NA
WP_076981499.1\|550492_553333_+	hypothetical protein	NA	NA	NA	NA
WP_143455157.1\|553260_554421_+	hypothetical protein	NA	NA	NA	NA
WP_089535057.1\|554535_556017_+	hypothetical protein	NA	NA	NA	NA
WP_056948799.1\|555997_556336_+	hypothetical protein	NA	NA	NA	NA
WP_076632184.1\|557062_557707_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_011374243.1\|557806_558187_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011374244.1\|558350_559097_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_082267833.1\|560122_560977_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011374248.1\|561092_562211_-	NAD(P)-dependent alcohol dehydrogenase	M1PHA2	Moumouvirus	4.2e-13	30.2
WP_011374249.1\|562321_562963_-	3-methyladenine DNA glycosylase	NA	NA	NA	NA
WP_082267832.1\|563101_563974_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	2.4e-16	28.3
WP_076632182.1\|563977_564721_+	ABC transporter permease	NA	NA	NA	NA
WP_016264768.1\|564720_565257_+	hypothetical protein	NA	NA	NA	NA
WP_076632181.1\|565284_565848_+	hypothetical protein	NA	NA	NA	NA
WP_011374255.1\|565840_566446_+	response regulator transcription factor	NA	NA	NA	NA
WP_011374256.1\|566515_566842_+	hypothetical protein	NA	NA	NA	NA
WP_076632180.1\|566965_568606_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011374258.1\|568685_569093_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_011374259.1\|569158_569455_-	hypothetical protein	NA	NA	NA	NA
WP_011374260.1\|569660_570023_+	hypothetical protein	NA	NA	NA	NA
WP_089535058.1\|570151_571042_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	6.9e-19	33.3
WP_061827202.1\|571934_572387_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_076632178.1\|572392_572800_+	DUF3021 domain-containing protein	NA	NA	NA	NA
WP_076632177.1\|572860_573208_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_011374266.1\|573384_573519_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_157769670.1\|574166_574868_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_056948013.1\|574869_575616_+	response regulator transcription factor	NA	NA	NA	NA
WP_157779291.1\|575781_575925_+	hypothetical protein	NA	NA	NA	NA
WP_099769415.1\|576136_577206_-\|transposase	IS3-like element IS1520 family transposase	Q6J1X2	Lactobacillus_phage	6.3e-27	34.9
WP_011374272.1\|577383_578052_+	hypothetical protein	NA	NA	NA	NA
WP_076981490.1\|578530_578872_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_112234043.1\|579295_580364_+\|transposase	IS3-like element IS1163 family transposase	A0A1P8CWQ3	Bacillus_phage	1.4e-34	33.2

DBSCAN-SWA_2

646398 : 654682

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076981375.1\|646398_647694_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.0e-15	29.6
WP_011374364.1\|647806_648532_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	4.1e-38	40.4
WP_011374365.1\|648524_648785_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_076632166.1\|649448_651674_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-151	41.1
WP_076632165.1\|651649_653083_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-50	33.7
WP_082267783.1\|653088_654105_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.5e-62	45.9
WP_076632164.1\|654112_654682_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.4e-25	35.4

DBSCAN-SWA_3

983312 : 990757

Staphylococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025015768.1\|983312_984158_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	7.7e-20	44.2
WP_056947598.1\|984354_984855_-	dihydrofolate reductase	G3MBI7	Bacillus_virus	3.5e-28	38.0
WP_056947596.1\|984865_985816_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	2.7e-122	64.3
WP_056947594.1\|986011_987901_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.3e-48	29.3
WP_056947593.1\|988013_988475_-	hypothetical protein	NA	NA	NA	NA
WP_076632490.1\|988543_989737_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A249XS88	Mycobacterium_phage	3.0e-33	33.0
WP_076632489.1\|989884_990757_+	YitT family protein	M1Q1P6	Streptococcus_phage	8.2e-57	41.5

DBSCAN-SWA_4

1149489 : 1158136

Acanthocystis_turfacea_Chlorella_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076632515.1\|1149489_1149861_-	hypothetical protein	E3W8I0	Leuconostoc_phage	1.1e-05	30.8
WP_076632516.1\|1149853_1151158_-	Y-family DNA polymerase	M1Q231	Streptococcus_phage	6.7e-87	39.9
WP_076632517.1\|1151157_1151403_-	hypothetical protein	NA	NA	NA	NA
WP_089535084.1\|1151822_1152479_-	LysM peptidoglycan-binding domain-containing protein	A0A288TY55	Enterococcus_phage	2.0e-23	52.8
WP_076632564.1\|1152718_1154761_-	potassium transporter Kup	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	1.3e-68	35.1
WP_164905668.1\|1154918_1155092_+	hypothetical protein	NA	NA	NA	NA
WP_076632563.1\|1155206_1155686_+	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	1.8e-18	38.9
WP_011374868.1\|1157416_1158136_-	aquaporin family protein	M1HCP3	Acanthocystis_turfacea_Chlorella_virus	1.7e-28	34.1

DBSCAN-SWA_5

1247531 : 1322910

Lactobacillus_phage(23.4%)

integrase,portal,transposase,terminase,tail,tRNA,capsid,protease

attL 1273855:1273870|attR 1323653:1323668

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056947067.1\|1247531_1249241_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_076632067.1\|1249266_1250544_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_056947073.1\|1252492_1255240_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA
WP_056947076.1\|1255297_1255855_-	ribosome recycling factor	NA	NA	NA	NA
WP_011374960.1\|1255857_1256583_-	UMP kinase	NA	NA	NA	NA
WP_056947079.1\|1256718_1257594_-	elongation factor Ts	NA	NA	NA	NA
WP_011374962.1\|1257700_1258495_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_056947082.1\|1258662_1258938_-	GIY-YIG nuclease family protein	W8W2G4	Invertebrate_iridovirus	1.6e-06	37.7
WP_056947085.1\|1258930_1259674_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_011374965.1\|1259795_1260419_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_076648203.1\|1260525_1261200_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	6.2e-28	32.9
WP_035187177.1\|1261196_1262090_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.2e-20	29.3
WP_011374966.1\|1262171_1263107_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_016265354.1\|1263247_1265038_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.5e-44	25.2
WP_056947092.1\|1265039_1266785_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	7.6e-46	27.7
WP_011374970.1\|1266926_1267157_-	YneF family protein	NA	NA	NA	NA
WP_016265356.1\|1267237_1267480_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_011374972.1\|1267614_1268229_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	1.1e-15	58.2
WP_011374973.1\|1268398_1268917_-	adenine phosphoribosyltransferase	A0A2K9L2N8	Tupanvirus	5.6e-13	32.2
WP_076632066.1\|1268940_1271253_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.2e-76	30.7
WP_011374975.1\|1271397_1272390_+	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	1.3e-47	36.6
WP_011374976.1\|1272475_1272841_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_011374977.1\|1272857_1273184_+	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	5.4e-06	34.6
WP_076632065.1\|1273234_1275070_-	hypothetical protein	NA	NA	NA	NA
1273855:1273870	attL	NA	NA	NA	NA
WP_016265361.1\|1275059_1275455_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_056947110.1\|1275444_1276488_-	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA
WP_011374982.1\|1276608_1277220_-	cell surface protein	NA	NA	NA	NA
WP_011374983.1\|1277366_1277876_-	DinB family protein	NA	NA	NA	NA
WP_011374984.1\|1278026_1278221_+	hypothetical protein	NA	NA	NA	NA
WP_011374985.1\|1278260_1280099_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	4.0e-21	26.0
WP_011374986.1\|1280233_1280377_-	hypothetical protein	NA	NA	NA	NA
WP_056947116.1\|1280520_1280832_+	hypothetical protein	NA	NA	NA	NA
WP_016265368.1\|1280936_1281467_+	hypothetical protein	NA	NA	NA	NA
WP_016265369.1\|1281468_1282305_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_016265370.1\|1282440_1283247_+	traX family protein	NA	NA	NA	NA
WP_076632064.1\|1283373_1283739_+	DUF805 domain-containing protein	D6PSS5	Lactobacillus_phage	8.0e-06	30.7
WP_085845076.1\|1284002_1284542_-	hypothetical protein	NA	NA	NA	NA
WP_089535088.1\|1284984_1285794_-	hypothetical protein	A0A0E3TBA5	Enterococcus_phage	2.5e-68	70.1
WP_089535089.1\|1285793_1286072_-	hypothetical protein	NA	NA	NA	NA
WP_089535090.1\|1286068_1286542_-	hypothetical protein	NA	NA	NA	NA
WP_089535091.1\|1286560_1286788_-	hypothetical protein	NA	NA	NA	NA
WP_089535092.1\|1286787_1287237_-	DUF1617 family protein	D7RWK3	Brochothrix_phage	2.1e-08	34.5
WP_167371964.1\|1287233_1291952_-	hypothetical protein	D7RWK2	Brochothrix_phage	3.3e-120	35.0
WP_061827104.1\|1291963_1292323_-	hypothetical protein	V9QIZ3	Oenococcus_phage	3.9e-29	52.6
WP_089535093.1\|1292338_1297441_-	hypothetical protein	A0A059NT57	Lactococcus_phage	4.2e-169	45.7
WP_157779294.1\|1297480_1297873_+	DUF2513 domain-containing protein	A0A2I7SCV0	Paenibacillus_phage	1.5e-13	38.5
WP_089535095.1\|1298046_1298427_-	hypothetical protein	D7RWJ9	Brochothrix_phage	1.0e-16	40.2
WP_061827099.1\|1298447_1298852_-	hypothetical protein	A0A182BQ86	Lactococcus_phage	9.1e-35	59.3
WP_089535096.1\|1299123_1299588_-\|tail	phage tail protein	V9QKJ6	Oenococcus_phage	3.1e-39	56.7
WP_157779296.1\|1299600_1299966_-	hypothetical protein	Q6SE74	Lactobacillus_prophage	1.1e-23	44.2
WP_069468058.1\|1299967_1300513_-	hypothetical protein	V5URV0	Oenococcus_phage	1.3e-52	58.8
WP_089535098.1\|1300460_1300850_-	hypothetical protein	D7RWJ2	Brochothrix_phage	2.2e-25	55.9
WP_082267804.1\|1300846_1301134_-	hypothetical protein	V5UQW8	Oenococcus_phage	4.6e-17	55.6
WP_076981424.1\|1301181_1302243_-\|capsid	major capsid protein E	V9QKJ3	Oenococcus_phage	2.7e-126	65.6
WP_061827092.1\|1302265_1302622_-	hypothetical protein	V5UQS0	Oenococcus_phage	5.9e-30	57.0
WP_061827091.1\|1302634_1303285_-	DUF4355 domain-containing protein	Q6SE80	Lactobacillus_prophage	2.8e-25	35.2
WP_076632018.1\|1303449_1304643_-\|capsid	minor capsid protein	V5UTD3	Oenococcus_phage	1.4e-91	47.7
WP_061827089.1\|1304645_1304960_-\|protease	ribosomal-processing cysteine protease Prp	D2J003	Enterococcus_phage	1.9e-11	45.4
WP_089535099.1\|1304901_1306350_-\|portal	phage portal protein	V9QKI8	Oenococcus_phage	2.2e-147	53.7
WP_089535100.1\|1306360_1307635_-\|terminase	PBSX family phage terminase large subunit	V5UQR5	Oenococcus_phage	4.4e-184	70.8
WP_089535101.1\|1307627_1308470_-	hypothetical protein	V9QKX0	Oenococcus_phage	1.8e-61	47.0
WP_157779297.1\|1308469_1308643_-	hypothetical protein	NA	NA	NA	NA
WP_089535102.1\|1308858_1309539_-	hypothetical protein	NA	NA	NA	NA
WP_157779298.1\|1309842_1310256_-	transcriptional regulator	E9LUP5	Lactobacillus_phage	1.7e-20	40.7
WP_089535104.1\|1310394_1310778_-	hypothetical protein	A0A0E3Y4X1	Fusobacterium_phage	6.4e-14	40.8
WP_089535105.1\|1310965_1311142_-	hypothetical protein	A0A1X9I6Y5	Streptococcus_phage	1.7e-14	76.9
WP_089535106.1\|1311160_1311430_-	hypothetical protein	NA	NA	NA	NA
WP_089535107.1\|1311422_1311845_-	hypothetical protein	NA	NA	NA	NA
WP_089535108.1\|1311864_1312569_-	hypothetical protein	NA	NA	NA	NA
WP_089535109.1\|1312574_1312895_-	VRR-NUC domain-containing protein	A0A0M7RDN7	Lactobacillus_phage	1.9e-35	66.7
WP_089535110.1\|1313189_1314425_-	helicase	A0A1B0Y896	Lactobacillus_phage	6.4e-132	57.1
WP_089535111.1\|1314372_1315215_-	DNA primase	A0A1B0Y4T1	Lactobacillus_phage	4.2e-82	59.9
WP_089535112.1\|1315286_1315799_-	hypothetical protein	A0A0A1ELK1	Lactobacillus_phage	1.2e-23	35.4
WP_089535113.1\|1315801_1316527_-	AAA family ATPase	A0A2P0ZLB2	Lactobacillus_phage	1.4e-65	60.3
WP_089535114.1\|1316523_1317903_-	DEAD/DEAH box helicase family protein	A0A0A1ENT0	Lactobacillus_phage	1.8e-162	63.1
WP_089535115.1\|1317893_1318379_-	siphovirus Gp157 family protein	A0A2H4JBT9	uncultured_Caudovirales_phage	4.2e-10	32.5
WP_089535116.1\|1318462_1318663_-	hypothetical protein	NA	NA	NA	NA
WP_157779299.1\|1318741_1318900_-	hypothetical protein	NA	NA	NA	NA
WP_089535117.1\|1318927_1319245_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_035146004.1\|1319259_1319460_-	helix-turn-helix domain-containing protein	A0A2P0ZL97	Lactobacillus_phage	7.4e-14	59.7
WP_167371965.1\|1319744_1320116_+	helix-turn-helix transcriptional regulator	A0A2P0ZLA1	Lactobacillus_phage	1.1e-21	50.9
WP_089535118.1\|1320128_1320539_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_052039208.1\|1320950_1321598_+	hypothetical protein	Q6SEG3	Lactobacillus_prophage	2.9e-11	49.3
WP_089535120.1\|1321764_1322910_+\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	2.4e-88	46.0
1323653:1323668	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage