CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP022427	Pantoea ananatis strain YJ76 chromosome, complete genome	5 crisprs	DEDDh,PD-DExK,DinG,csa3,cas3	5	16	7
NZ_CP022431	Pantoea ananatis strain YJ76 plasmid p_unamed2 sequence	1 crisprs	NA	0	2	0
NZ_CP022430	Pantoea ananatis strain YJ76 plasmid p_unamed4 sequence	0 crisprs	NA	0	0	0
NZ_CP022428	Pantoea ananatis strain YJ76 plasmid p_unamed3 sequence	0 crisprs	NA	0	0	0
NZ_CP022429	Pantoea ananatis strain YJ76 plasmid p_unamed1 sequenced	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022427_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022427_1

261596-261687

Orphan

Consensus_repeat	Method
GCCGTTCGCCGTGATGTTGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022427_1

>merge|NZ_CP022427|1|261596-261687|CRISPRCasFinder
GCCGTTCGCCGTGATGTTGCTGCCGGCAGACATGTTGCCGCGTGCGTTAACGTCCTGACCCGTTACGGTGCCGTTCGCCGTGACGTTGCTGC

>NZ_CP022427|1|1|261596-261687|CRISPRCasFinder
GCCGTTCGCCGTGATGTTGCTGC	CGGCAGACATGTTGCCGCGTGCGTTAACGTCCTGACCCGTTACGGT
GCCGTTCGCCGTGACGTTGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022427.1\|WP_019105593.1\|264162_265278_-\|pilus-biosynthesis-protein-PilR	unknown	unknown	gnl\|CDD\|224376
NZ_CP022427.1\|WP_089517064.1\|266837_267341_-\|type-IV-pilus-biogenesis-protein-PilP	unknown	unknown	gnl\|CDD\|274394
NZ_CP022427.1\|WP_089517059.1\|258337_258955_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP022427.1\|WP_019105592.1\|263562_264153_-\|type-IV-prepilin	unknown	unknown	gnl\|CDD\|285957
NZ_CP022427.1\|WP_089517067.1\|270742_272038_-\|pilus-assembly-protein-PilL	unknown	unknown	gnl\|CDD\|163460
NZ_CP022427.1\|WP_089517063.1\|263072_263558_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP022427.1\|WP_089517057.1\|257178_257811_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP022427.1\|WP_089517056.1\|256708_257167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_089517065.1\|267327_268611_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|369114
NZ_CP022427.1\|WP_089517066.1\|268613_270287_-\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177
NZ_CP022427.1\|WP_024472209.1\|262392_263076_-\|potassium-transporter-TrkH	unknown	unknown	unknown
NZ_CP022427.1\|WP_089517055.1\|254590_256705_-\|conjugative-coupling-factor-TraD,-PFGI-1-class	unknown	unknown	gnl\|CDD\|274767
NZ_CP022427.1\|WP_089517058.1\|257810_258341_-\|integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|378552
NZ_CP022427.1\|WP_089517060.1\|258933_259647_-\|TIGR03759-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274770
NZ_CP022427.1\|WP_024472246.1\|253305_253698_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_024472463.1\|270297_270741_-\|pilM-family-protein	unknown	unknown	gnl\|CDD\|369356
NZ_CP022427.1\|WP_089517054.1\|253842_254604_-\|TIGR03747-family-integrating-conjugative-element-membrane-protein	unknown	unknown	gnl\|CDD\|163459
NZ_CP022427.1\|WP_024472528.1\|260700_260898_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_089517061.1\|259658_260348_-\|plasmid-transfer-protein	unknown	unknown	gnl\|CDD\|184281
NZ_CP022427.1\|WP_024472210.1\|265267_266830_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|225363

Protein	Function_ID	Function_description	E-value
NZ_CP022427.1\|WP_089517065.1\|267327_268611_-\|pilus-assembly-protein	gnl\|CDD\|369114	pfam06864, PAP_PilO, Pilin accessory protein (PilO). This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body. This family does not seem to be related to pfam04350.	6.29372e-53
NZ_CP022427.1\|WP_089517059.1\|258337_258955_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.26208e-09
NZ_CP022427.1\|WP_019105593.1\|264162_265278_-\|pilus-biosynthesis-protein-PilR	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	5.37449e-19
NZ_CP022427.1\|WP_089517067.1\|270742_272038_-\|pilus-assembly-protein-PilL	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	4.19866e-56
NZ_CP022427.1\|WP_089517063.1\|263072_263558_-\|pilus-assembly-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	7.13772e-39
NZ_CP022427.1\|WP_089517057.1\|257178_257811_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	1.46882e-21
NZ_CP022427.1\|WP_089517054.1\|253842_254604_-\|TIGR03747-family-integrating-conjugative-element-membrane-protein	gnl\|CDD\|163459	TIGR03747, conj_TIGR03747, integrating conjugative element membrane protein, PFL_4697 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	2.07257e-95
NZ_CP022427.1\|WP_089517066.1\|268613_270287_-\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	2.85869e-100
NZ_CP022427.1\|WP_089517055.1\|254590_256705_-\|conjugative-coupling-factor-TraD,-PFGI-1-class	gnl\|CDD\|274767	TIGR03754, conj_TOL_TraD, conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.	0
NZ_CP022427.1\|WP_089517058.1\|257810_258341_-\|integrating-conjugative-element-protein	gnl\|CDD\|378552	pfam11072, DUF2859, Protein of unknown function (DUF2859). This is a bacterial family of uncharacterized proteins.	2.36377e-56
NZ_CP022427.1\|WP_089517060.1\|258933_259647_-\|TIGR03759-family-integrating-conjugative-element-protein	gnl\|CDD\|274770	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	1.14328e-96
NZ_CP022427.1\|WP_089517064.1\|266837_267341_-\|type-IV-pilus-biogenesis-protein-PilP	gnl\|CDD\|274394	TIGR03021, pilP_fam, type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP. [Cell envelope, Surface structures].	1.29618e-20
NZ_CP022427.1\|WP_024472463.1\|270297_270741_-\|pilM-family-protein	gnl\|CDD\|369356	pfam07419, PilM, PilM. This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.	3.77409e-21
NZ_CP022427.1\|WP_019105592.1\|263562_264153_-\|type-IV-prepilin	gnl\|CDD\|285957	pfam08805, PilS, PilS N terminal. Type IV pili are bacterial virulence-associated adhesins that promote bacterial attachment to host cells. In Salmonella typhi, the structural pilin protein PilS interacts with the cystic fibrosis transmembrane conductance regulator. Mutagenesis studies suggest that residues on an alpha-beta loop and the C terminal disulphide-bonded region of PilS might be involved in binding specificity of the pilus.	1.78504e-10
NZ_CP022427.1\|WP_089517061.1\|259658_260348_-\|plasmid-transfer-protein	gnl\|CDD\|184281	PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional.	0.00243872
NZ_CP022427.1\|WP_024472210.1\|265267_266830_-\|pilus-assembly-protein	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	1.95048e-49

>NZ_CP022427.1|WP_024472528.1|260700_260898_+|hypothetical-protein
MKAGFRFAALCMFVTFTAMARDIPHVKPLPWHRSGYTGHSGIADTAETPDEHIREEQPRVSRSAV
>NZ_CP022427.1|WP_089517061.1|259658_260348_-|plasmid-transfer-protein
MVIALLGTLTASAVLLVRVSNLTIRVNTLDAAFRSGEIGQLSSNVTIMQEKLKTLEKQVSALAPVQDKVTSMSTEQLKLSTRVNQLSDASLSDQQSVEQLQQQLGQLRQEVQTSASVIDALKQQAVATQKAPEPENSKPKPSQRAVSSPKKTKRSVRHAVMPAAPFELTGIERRGGQTFAVVIPRGVTVISSMRLLSPGDGFMGWTLRALEGNAALFSVNGSAVRLRVQ
>NZ_CP022427.1|WP_089517060.1|258933_259647_-|TIGR03759-family-integrating-conjugative-element-protein
MKKTLTAVLILLPLWALASTAQTPAVNSRVAPLQENTTSSLSTQQQARQWGLSDSDWSRYQTLMKGERGIMSPGLDPLTALGVETDNSAERRRLAELWVKHEYQRTEKELAFQRDVNAAWLRLYPETLAVNMGANAAGIAHDTQGRLALFLKENCSRCDARLAAVLADNRPVDLYLVGIDSDDGLRAWAVKHNIPVEKVRSRQITLNHDNGLWFRYGMGQMPVILQQGETGWQVAAY
>NZ_CP022427.1|WP_089517059.1|258337_258955_-|lytic-transglycosylase-domain-containing-protein
MAGRGVLKNAAVLVCLVSCACSAADRRQVIPDAYRQIAAAERVPAESLYSLAMAESTRKTAWGAKPWPWTINVGGRGYHYETREAAFTALLGFMQRWPLKNIDVGVAQVNLGWNGHFFPTYRDAFDPYLNLRAAARILRACYEARPGSWLNAAGCYHHPAGGKEAQTYIAIVRRKLGQIAPVSSGAQSVTPVELASNTLTWIEPK
>NZ_CP022427.1|WP_089517058.1|257810_258341_-|integrating-conjugative-element-protein
MMKRNCFIRNALFSACLLSVVTGASAALVVVGDLGGEPTAPYFDAINADKDAVTGAPAVPAAPPESLSISDMLPVSTPEMSPGPVSPQSLELSGMPPVFVLGDDSLSKQWLSQHAAALSQMHATGMVVSVKDAAALSALRALAPSTEMVPVSGGDLARRLHLAHYPVLITDKGLSQ
>NZ_CP022427.1|WP_089517057.1|257178_257811_-|restriction-endonuclease
MPVYVIAELIKANPVQVALVVALALVLVCLLSPYCLRSASDRRHRRYQKRAASALVRLTELRDDAARMVWLRKVNPYVFEEMLLTALSRQGFRIKRNARYSGDGGLDGQVWIAGQRWLIQAKRYGATINAQHVAAFGLLAVQEQSRGLFIHTGRTGLSSHDAFRRCPLVILISGQRLLQLLAGDRRWLDFHDNVHHLELQSGFRAPSSRQ
>NZ_CP022427.1|WP_089517056.1|256708_257167_-|hypothetical-protein
MRIFFRTVPVAAIIVLQSLNAGRAFKSLFLLLLSLLNYMLLLFMYLLKPVFLWPLMFLSAVLTILMMAVPVLLFASPVFTLSSAGSGLLKVIHQFPEMWPVLILLSLQIDMLLFLRREYNREFTRMRDRLLRREIFHAGSGRGGDVKDRQRD
>NZ_CP022427.1|WP_089517055.1|254590_256705_-|conjugative-coupling-factor-TraD,-PFGI-1-class
MSDRYVMESMLRPAVEMYSATVAGSATFICLTAPWSVALAPSVSWVTAAGFGVLALKRTSQGLKILRYRRNIRRLSRYALTSDQIPVSRRHLFLGKGFQWSPRHTQRLMEARRPECEIYVQPSVMYRMARELEKKMEYSLPWLCRLTSADSALNPFRPLPPVGGSSVYHGVEPVEVNVMSDLGERVGHMLVMGTTRVGKTRLAELLITQDIRRRNAAGEFEVVIVFDPKGDADLLRRMYAESHRAGRQDNFWVFHLGWPDISARYNAVGRFSRISEVASRVAGQLSGEGNSAAFREFAWRFVNIITRALVALGQRPDYSLILRYVTNIGELYETYVDNLLSEKAPELVASMQAKMALPLADRDLPRHLQGRDNGKKIWASEQVLGSPEGKKLWDPVLDGLRSAVQYDRTYFDKIVASLLPLLEKLTTGKTAALLAPDYTDLSDPRPILDWHNIIKSRGVVYVGLDALSDPVVAAAVGNSMFADLVSEGGHIYKFGLGDEGDKKAGKAVINLHCDEFNELMGDEFIPLINKGGGAGFQVTAYTQTLSDIEARIGNAAKASQVIGNFNSLVMLRVREKNTAMLMTDQLPEVGVYQKTLTSGVTDVSRPGEGTDFNSNVNDQVTLVKVPMISPSDIINLPKGQAFALLEGGRLWKIRMPLPVSDNNDRFMPASLKQLADTMEKNYHSGESWWTGGDAGIPGGLHVPE
>NZ_CP022427.1|WP_089517054.1|253842_254604_-|TIGR03747-family-integrating-conjugative-element-membrane-protein
MSQNDGGNTRQSAPAKHGHPGPFTLLLWDMPLSLIGILIGSLFVSLGVEYACITFIWPDEGAMHSYQVMLDESHWLSSGYTRSLLMATPVETITRWVQAAWHWLFVDSGFSHWLASFRETSQKGSDLIPSLNGFGASLISRLGEYLQATLWVTLIFFIRVMILFLSIPLFGLVIITGIVEGLVRRDLRRYGAGYESSFVYHHAKRFVKPALYGPCMLYLAWPTAVWPNLFLLPSALLVGGVLAVVTASFKKYL
>NZ_CP022427.1|WP_024472246.1|253305_253698_-|hypothetical-protein
MKNNRYTINGLYLIVRKFYLDSFPNPLSFDALNALNFEIKKFNKKAKVEESNKFYFFDNPNPTSVDSSNPFSNENGSEERSEEEYFEKAGDDEIRNIIQDIRAMESWLWKAGYIDDKIATEKMLANKSIV
>NZ_CP022427.1|WP_024472209.1|262392_263076_-|potassium-transporter-TrkH
MTLLTLSMPWQFAAGLFPLFLLLLCLMAARVRTDLKLSLYPSVTVDQDVTELAVCWLFATAATLTMLSPLSARLPAFFFILFLFRLTLTDALTGLLPRSVTVKCLIAGLMASLWQPLTGASVSALSALLLHIVAATTMLVITGGLRYVSLLKGGRENPAMGDVWMSGAVCAWLGFSGFHAVGIGVMLFAMWQLQSRRASEGGPLGPWLAAGAVMVTLFQLYQPLVTW
>NZ_CP022427.1|WP_089517063.1|263072_263558_-|pilus-assembly-protein
MSRTVLNVLMLMVLFCARAHAFCFDAAGAKYHIDPLLIQAIATGESSLHAGITHINRDARTGRALSTDYGLMQVNSTHIPSLIAKGFISRPQDLLTKPCLNVQIGTWILATHFQVCGISWNCLGSYNAGFRKDRHETRESYANRVYAIYIKLLLKERGIKL
>NZ_CP022427.1|WP_019105592.1|263562_264153_-|type-IV-prepilin
MSFFNNTAEKQPDRGWAFLEQGAVGLVYMIVAALIVAGIWKLFGAKDAATEVTSLQTLMSNGVALKTGNGYDFSSGASMTGFLIQKGGAPSGFTVHGTASSGTATLTNSYGGQVVMAPVANSNGYNNGFSVTTQSVTQAGCIDIATRMASAGSASSMAINSTDFSSGQVSSEAIGQACTADSGRTGNNTLVFTHNG
>NZ_CP022427.1|WP_019105593.1|264162_265278_-|pilus-biosynthesis-protein-PilR
MSRNLRFRTERDMSHFEKCRYQAVRLTFTGAYRQVFYENMRFLLENRKPLDISLKMIGDVHTSFGEKWHPYLELTEDCLEGLRDNSPGRTLADVLAVWVPYEEAALISAGMKTGNIPVALMQADKLINAREQIFAQVAFASVYPLVLAVLGGGLLAVNNQSLVPVLSNISDPASWTGALGFMKGVSDWTERWGLTSAVTGSVLVALSLWSLPRWRGGLRRIADSIMPWSLYKDLQGAVFLMNTGALLGAGVPELEAMQLLHSFAPSWLQERLEAAMDEMSEGNSLGMALRKSGYDFPSREAVNYLSLLDDGDGSAELISNYADRWLAQTLKRVARRATVTRLLSILMILGFFALIILMAMQIQDSSSLNLH
>NZ_CP022427.1|WP_024472210.1|265267_266830_-|pilus-assembly-protein
MIPAKEIADFVFAEHHPVLGVTLLIDKNRRQDPAIQRWAMDSAKQYPGARTEFVSLSELNQHRENAAALGPDVTEDDLSTKDVSRSQDKVLSYFRLANELNASDIHMEISADRKLTVIQLRIHGELEVIDELTDEEGTTLASTVYISMCDVREQSFVAGREQSGRVSSKFARQAGLFGARYEHRPTPDGLYLVMRMIPDDSKNIPTLPQLGFLAEQIKIITQILRLPSGMVLVTGPTGAGKSATLRVLSDIWLKITGGKKRLLTLENPPEGLIPGAIQTPVMPDDSTPEAISRAWNNANASALRLDPDAILNGEMRDFYSIMAGIYGTETGHIFMSTQHTLSAIGALSRMEHFGINRQLLADSSLITGLIGQRLVPVLCDCCKIPWAVKAPELGSDTRERLEKYCTVEGVCHPGQLFFRNPEGCECCRKVIPITKRVVSKGITGRTAVVEVVRTDAMMMQLWINHGPAVARQYWVNKGGITRVVHLLRYLAEGRVDPLEGDLVCPLDEDELMRCEVPNVT
>NZ_CP022427.1|WP_089517064.1|266837_267341_-|type-IV-pilus-biogenesis-protein-PilP
MRRNSPAVICLLLSWTLMHHVQAADSGSLPPNVTLGELESAQAKNLLLEQRVQTARLQQQLRESLAPVTSAPALSAVVPPLSSYPQAGQMPSSSSQVKESSSAAPKSAGIRLVEIYGKPGQLRARLLLPSGGIAEVVKGDPVPGTSKRVTAVTETVVRLSDDTELSF
>NZ_CP022427.1|WP_089517065.1|267327_268611_-|pilus-assembly-protein
MKIKKKASLHLNNGVTVRDRKNRREWVAGMEWEKASSGIQWLRHGVRAADTHYRIQGSRPHTMVGNASPGRTRSGVYSLAVAFQLCEGGNAWGIYRLSREQECWVFFAVSNGHLSVMGDVTGTRADVEAAAENFLLFNDSGEIRCAARAEDGTDALSFTSRLSRTQLRRCRLHRRVAPAALALPSLLLITLLGAGWYARDTLSERAKQAADEAAFRARLAMTPAKPVLPASAPHPWAHQLPVPVMLSFCWLTREPLYASVAGWRVSDAECIPKGIRLRYTATPGATVSDFARRVKELFGLDAVFNLQEGGKNGDVFIPARVTPELFEDEKLPGAEALLMRFISHLQRRNIDVKFDEVKPPVLAPGQEMKTAPQDWREFTFIINSRLQPELLFQGLDATGIRLTSVAISMNEQAKFNYTIKGIVYAQK
>NZ_CP022427.1|WP_089517066.1|268613_270287_-|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MSRTPLKMTLLAMAVLLSACSVRDVATIEKDNNTQGDTAQRILQSRLDMSQPAVVWADKPWVNLKPIQSAIAAPDDVKMPPCQVFFNSPEGLTLPQIASRINAICGFRVYISPEVSAALLQSAGGSVVTSQMSGRLPAPDDNGRVPLAQMGMPAQSAVMSTSEPVLFQGTRFQGDAQEALNIAASTLGLSVRRTTGRVDFFIQDTRTFQLAILNTKVDSSASINSGAGAQLGNQSGNGGTKGDVSSNQKTNYGMNSDLYNDIRKTVEQILTPKSGRYWLSDATGTLSVTDTPDVLDRVGRYIDYQNQVLHRQVQLTLQIVRFTQTKNVDRGLDWGLVAKTVSGLGASIGSTFTGAPANAGSFGLSILNSATGGAERFSGSQLMIRALEQQGTVTMALNQTDPTANLTPVAYQLSNNTGMLNSSSSTAVANVGVTSSQSVSSITTGLFITMLPFVQANGDIQLQFAYSYTTPPDIKSFISRDGNTRNDVANTATEGLARKVNLRAGQTLVLTGSDQQNASSDKQGTFSPENYLLGGGQSGAKSRSTLIIMITPVLLGQ
>NZ_CP022427.1|WP_024472463.1|270297_270741_-|pilM-family-protein
MGFALPVMALAMFFWLMASDAQRRNSDVVTQSVTVAAPARLATDMLRTADAVNDWRHGRSVGDGPVSPAATGMMPPPDERIQSVIQNGRLWVWVANTPGVYAALRNQSTSSALALTVSGGRLRMYDGTDMNLSLPSGVTEGSIVYLN
>NZ_CP022427.1|WP_089517067.1|270742_272038_-|pilus-assembly-protein-PilL
MAVPSGQAGKRAGIIACTVMLAGCVNAAATDNASVYSRSRTPARFDDIYRNRSPEVVRYDRYTLVSTRPADAQLDPLNQVVDITMPAQLVSTVGEGFRYLLLESGYSLCSATTAAFSELLSRPLPAVQRTIGPLKLSEALQVVAGPAWRLKVDEVNREVCFELRDQYRSFSAPAASLAAIRPAVSAPISKSYAAPVVQTKAVSVKTPAPGLARNPFTGDVVTPSGLKPQSLSVPSPVLQQSQSSVTSGNLPAFSLKPASVASAGTATAAHTPAQQNHRVITPAAVKTKTAPLTTVNTAPKASSVVHQQPSTAVTPAPAADSRIVPTYSTGTPVTPPATGQTWRAEPGTTLKEALTAWTAKAPCANGGNWVLIWPVTLDYRIDAPLVFHGNFESVLVQVFDLYRHAEKPLFAEASRIQCLVSVSDTPTPGGR

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Crispr_ID: NZ_CP022427_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022427_2

279177-279271

Orphan

Consensus_repeat	Method
TATTATTTGACCGCTGTTGCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022427_2

>merge|NZ_CP022427|2|279177-279271|CRISPRCasFinder
TTGAATTTGACCACTGCTGCGCCCCGAAATAATGGTTATTATTTGACCGCTGTTGCGCCCCGCAACACCGACTATTATTTGACCACTGTTGCGCC

>NZ_CP022427|2|2|279177-279271|CRISPRCasFinder
TTGAATTTGACCACTGCTGCGCC	CCGAAATAATGGTTATTATTTGACCGCTGTTGCGCCCCGCAACACCGAC
TATTATTTGACCACTGTTGCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022427.1\|WP_024471387.1\|285645_286533_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP022427.1\|WP_024471386.1\|284288_285653_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP022427.1\|WP_089517066.1\|268613_270287_-\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177
NZ_CP022427.1\|WP_014606865.1\|282329_282587_-\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224648
NZ_CP022427.1\|WP_022623154.1\|287424_288033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_024472519.1\|272426_273572_-\|DUF2971-domain-containing-protein	unknown	unknown	gnl\|CDD\|378585
NZ_CP022427.1\|WP_024472501.1\|278313_279039_-\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NZ_CP022427.1\|WP_089517069.1\|276283_278302_-\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP022427.1\|WP_014606863.1\|280915_281512_-\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP022427.1\|WP_024472518.1\|273947_274196_-\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NZ_CP022427.1\|WP_089517068.1\|274512_275067_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NZ_CP022427.1\|WP_024472517.1\|274179_274422_-\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NZ_CP022427.1\|WP_089517071.1\|282579_284292_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213858
NZ_CP022427.1\|WP_022622163.1\|280685_280916_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_024472463.1\|270297_270741_-\|pilM-family-protein	unknown	unknown	gnl\|CDD\|369356
NZ_CP022427.1\|WP_022622162.1\|281596_282340_-\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_CP022427.1\|WP_089517067.1\|270742_272038_-\|pilus-assembly-protein-PilL	unknown	unknown	gnl\|CDD\|163460
NZ_CP022427.1\|WP_014606858.1\|275142_275652_-\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP022427.1\|WP_089517070.1\|279362_280607_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP022427.1\|WP_022623155.1\|286942_287251_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022427.1\|WP_024471387.1\|285645_286533_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.07342e-25
NZ_CP022427.1\|WP_024471386.1\|284288_285653_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP022427.1\|WP_089517066.1\|268613_270287_-\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	2.85869e-100
NZ_CP022427.1\|WP_014606865.1\|282329_282587_-\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	3.75172e-12
NZ_CP022427.1\|WP_024472519.1\|272426_273572_-\|DUF2971-domain-containing-protein	gnl\|CDD\|378585	pfam11185, DUF2971, Protein of unknown function (DUF2971). This bacterial family of proteins has no known function.	5.76851e-07
NZ_CP022427.1\|WP_024472501.1\|278313_279039_-\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	8.20355e-90
NZ_CP022427.1\|WP_089517069.1\|276283_278302_-\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP022427.1\|WP_014606863.1\|280915_281512_-\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	2.36011e-63
NZ_CP022427.1\|WP_024472518.1\|273947_274196_-\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	4.16989e-19
NZ_CP022427.1\|WP_089517068.1\|274512_275067_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	4.52063e-98
NZ_CP022427.1\|WP_024472517.1\|274179_274422_-\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	9.65547e-15
NZ_CP022427.1\|WP_089517071.1\|282579_284292_-\|hypothetical-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	1.98797e-148
NZ_CP022427.1\|WP_024472463.1\|270297_270741_-\|pilM-family-protein	gnl\|CDD\|369356	pfam07419, PilM, PilM. This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.	3.77409e-21
NZ_CP022427.1\|WP_022622162.1\|281596_282340_-\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	2.14604e-08
NZ_CP022427.1\|WP_089517067.1\|270742_272038_-\|pilus-assembly-protein-PilL	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	4.19866e-56
NZ_CP022427.1\|WP_014606858.1\|275142_275652_-\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	3.03077e-61
NZ_CP022427.1\|WP_089517070.1\|279362_280607_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	7.15518e-06

>NZ_CP022427.1|WP_024472501.1|278313_279039_-|TIGR03761-family-integrating-conjugative-element-protein
MADKTDKRTGALQSEMTIALHTNYAIGLWQGRKPEKNESDKPGRHGIIGMPQFFQRAGQINQDSLRNNPWADQAMYQLEEKIKSASEAMTSLLEQIDKDMSMLPKGVSVSDVESAEPLDINVFTRTPLGYRCVFLLMGFDQFAKKVLQASHYGLITRSKRDQYLSEGGRLLRQIYGTVLSYRHVDSTRIDAAEDNETWRKACEAAGEPDRAVLLGEKRSAFSPPVNEASVSLLRLRYKAGQ
>NZ_CP022427.1|WP_089517069.1|276283_278302_-|DNA-topoisomerase-III
MRLFLCEKPSQGRDLAAVLGASRRGEGFMTGNGVTVTWAVGHLLETAPPEVYGQQYGKPWSLSALPILPSRWQVIVKKDTQDQFKVIEKLLRQADEVVIATDADREGEVIARELLDYCGWEGRILRLWFSALDELSVRAALSDLRPGQASVGMYHAGLGRSRADWLVGMNLSRLYTLRAAEAGFEGVVSVGRVQTPTLALVVRRDREIAAFVPKPYWQVKATLSASGVSFQASWVPAAVYADEEKRCIHQNIAQQVAQLCRQAGVATVTEYETKREKEAAPLAFSLGTLQRACGKMWNMSPQKVLDTAQSLYETHKATTYPRTNCGWLPELMREEIPAVFDAMARTDPSPEFTSLLSQLDRRFASRIWNDKKITAHHGIIPTRNAVQLSSLTETERQVYLLIRRNYLAQFLPLCESDATRISFDIGGQLFRTTGRTEVLKGWKVLFTKDEEDKDTAEEDSAGSLPPLSKGAPCGVTGAEVKQLMTQPPAHYSFDTLIGAMMNAAAYVTDLQLRKILKENAGLGTEATRAGIIEQLLSRRFITLKGSKLLATDLGADVIDALPPQLTDPGMTALWEQALDEVAAGRMNLSDFLQRQTAWTSTLVSQGMQQRISIRVPPSPPCPLCGSKTALRRSPKGEFRSCTRYPECKGIISLDTGRRKSSGRAKSPKTKKN
>NZ_CP022427.1|WP_014606858.1|275142_275652_-|DUF3577-domain-containing-protein
MTATANTPASNNTASAGSATTGNNQKEYFNLNVSGIGYLSSIRRLQGSNGEFTCAVINALTGPTDNASYTRFDITVAGKEQTSLINRCQKAVDEEEKVLIGFVLSGLKADVFTLQSGEHAGESRPSLKARLIKVEFIKKGQDVVYKAPNASQTPETGPAAQKAYDPESF
>NZ_CP022427.1|WP_089517068.1|274512_275067_-|single-stranded-DNA-binding-protein
MSARGVNKVILVGNLGQDPEVRYMPNGTAVTSLSLATSETWRDKQTGENREKTEWHRVVLFGKLAEIAGEYLRKGSQVYIEGKLRTREWQDSEGTKRYTTEIVVDVNGTMQMLGGAKSSTNTSGNNKPSGQQNGWGQPQQPQPSQAQQTAPSNPANEPPMDFDDDIPFLGHGYGVCRKAIYAIS
>NZ_CP022427.1|WP_024472517.1|274179_274422_-|DUF4160-domain-containing-protein
MPVILRVRGFKFFFYSNEGNPLEPAHIHVRCAEGEAKFWTQGEVRLSTNDGFDSRTLRELTKLVEDNQTLFVEAWSDYFS
>NZ_CP022427.1|WP_024472518.1|273947_274196_-|DUF2442-domain-containing-protein
MTISAKTVKFDESTMWVELSDGRTIGVPLVWFPKLLIASEGDRNNFELSKRGIHWEALDEDISVDGLLAGRGDVTHSPHHVA
>NZ_CP022427.1|WP_024472519.1|272426_273572_-|DUF2971-domain-containing-protein
MFLYKFYRPGENFNKALRYSEIYFSSNKQLNDPNDLKAKYYFEDNVDLWHRLLHSEAPMGPSLTTFLKLENKQLSNGLNDIFKGIKVDANAKSLNQIFDINKEKIESLIRSSIKDLAEIPDSHYFSIEDPVPFFVESCMFGLKELAFKGIKTEVYSVSFSTNPLEPMMWAHYADGFKGCAVIYCVNNDKLPLTRNIYSKSFFELPLHDVKYHDGEKLIPILQCGMGEQSPIEQALLKKNSFWKYESEVRAFITKNQRLKLAASNDINRIPEWEERIFHTHPALIAGVIFGPAFDESKKYLVEFCLRQTKEAAECKPNFYLFDTQLNDNGTIAITKAKQCKPSAQLTPESLMSREFGGAQLDELLQKMGITQQKPSPSCPLA
>NZ_CP022427.1|WP_089517067.1|270742_272038_-|pilus-assembly-protein-PilL
MAVPSGQAGKRAGIIACTVMLAGCVNAAATDNASVYSRSRTPARFDDIYRNRSPEVVRYDRYTLVSTRPADAQLDPLNQVVDITMPAQLVSTVGEGFRYLLLESGYSLCSATTAAFSELLSRPLPAVQRTIGPLKLSEALQVVAGPAWRLKVDEVNREVCFELRDQYRSFSAPAASLAAIRPAVSAPISKSYAAPVVQTKAVSVKTPAPGLARNPFTGDVVTPSGLKPQSLSVPSPVLQQSQSSVTSGNLPAFSLKPASVASAGTATAAHTPAQQNHRVITPAAVKTKTAPLTTVNTAPKASSVVHQQPSTAVTPAPAADSRIVPTYSTGTPVTPPATGQTWRAEPGTTLKEALTAWTAKAPCANGGNWVLIWPVTLDYRIDAPLVFHGNFESVLVQVFDLYRHAEKPLFAEASRIQCLVSVSDTPTPGGR
>NZ_CP022427.1|WP_024472463.1|270297_270741_-|pilM-family-protein
MGFALPVMALAMFFWLMASDAQRRNSDVVTQSVTVAAPARLATDMLRTADAVNDWRHGRSVGDGPVSPAATGMMPPPDERIQSVIQNGRLWVWVANTPGVYAALRNQSTSSALALTVSGGRLRMYDGTDMNLSLPSGVTEGSIVYLN
>NZ_CP022427.1|WP_089517066.1|268613_270287_-|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MSRTPLKMTLLAMAVLLSACSVRDVATIEKDNNTQGDTAQRILQSRLDMSQPAVVWADKPWVNLKPIQSAIAAPDDVKMPPCQVFFNSPEGLTLPQIASRINAICGFRVYISPEVSAALLQSAGGSVVTSQMSGRLPAPDDNGRVPLAQMGMPAQSAVMSTSEPVLFQGTRFQGDAQEALNIAASTLGLSVRRTTGRVDFFIQDTRTFQLAILNTKVDSSASINSGAGAQLGNQSGNGGTKGDVSSNQKTNYGMNSDLYNDIRKTVEQILTPKSGRYWLSDATGTLSVTDTPDVLDRVGRYIDYQNQVLHRQVQLTLQIVRFTQTKNVDRGLDWGLVAKTVSGLGASIGSTFTGAPANAGSFGLSILNSATGGAERFSGSQLMIRALEQQGTVTMALNQTDPTANLTPVAYQLSNNTGMLNSSSSTAVANVGVTSSQSVSSITTGLFITMLPFVQANGDIQLQFAYSYTTPPDIKSFISRDGNTRNDVANTATEGLARKVNLRAGQTLVLTGSDQQNASSDKQGTFSPENYLLGGGQSGAKSRSTLIIMITPVLLGQ
>NZ_CP022427.1|WP_089517070.1|279362_280607_-|helix-turn-helix-domain-containing-protein
MNIPADCIVARTLSRMEKSLERRAVSGDAGHERSGLLFMGNVHDAFPRRLFLDTRLSPLDKTAWVMIRLYAQQNEGAVFPTYDELQEQLASAHSDKASRETVSRTLLMLRLTGWISLCKKVRDECGRVRGNIYAQHDEPLGYRDAETFDPGWLTLVEQSCQSKNKSVRMTALAVVNDILQDSGMRHRHSRLALIESRLNAPSTPGAMVRKSGAARPGSKNELSQKAVEKSLETLSSESELSHAQGLKLLSTESELSLKSVTYNRVRNSNRNVRSFTQSVIKETYVADQPVLPEGFMAMLSGEDRQMLSEQFGALPVAVATGLSGLLQEQLRSGRLANPAGWMFAMLKRARQGEFRPSEYPATPSAQRTSKPVRSAVVSSGLRSESKFTAPVLPEKRASAEQVGAAIAAIRRQFS
>NZ_CP022427.1|WP_022622163.1|280685_280916_-|hypothetical-protein
MRLSDFTRRQQVSPAVRRRAQQLFLALCSGKKVFRRLALNGYLKIDVGPYWRMLSKDGGRQWWLMDHETYNREIRR
>NZ_CP022427.1|WP_014606863.1|280915_281512_-|DUF2857-domain-containing-protein
MNQNTLSGATTSILNSLLMDIKSGNIRRCESLGLSVEEIRVLSGLSLDELHYIGQSKVSVLDVKLNHENFWLILNQARNEQARMLMIDRALELGGSMELMDKYFGMSPSDVSSRRRLMGIESRQGRTQSLTEEQDALLWNEWKNTGLESPESHKALEAMMLAAELHSLSLTAVWTKVCQWCREASKRVSPVQALRKEA
>NZ_CP022427.1|WP_022622162.1|281596_282340_-|DUF2786-domain-containing-protein
MADKSKLTRRIRRLMALGTQNSNDHEAARAVALAQRLMRRHGLTDDQITLSEIGESVCEQLTSNAEKVPAWMHSLATVVCMATGCRCWFGWYGYVSTGGLRLVRRSLHFYGFGERPELALYIYTVLQRKVRAATDAHMSTYRRQRIKKSTLRGRADQFREGWVSGVWQVLQSFSTPDGENQVLQRWLAQRHSGQTLSDVVTRQAKSCRGDLLARNAGWFAGRQAELSHGLAGAQANKQLTAGDTRND
>NZ_CP022427.1|WP_014606865.1|282329_282587_-|TraR/DksA-family-transcriptional-regulator
MSDDLNDEMAQASTALFIQRGIDAVRSQLRSDRPSNEFCECCGADIPLARQRAVPGAELCADCQYLEEKKNRHMAGGNWGGRHGR
>NZ_CP022427.1|WP_089517071.1|282579_284292_-|hypothetical-protein
MSNVRNLNLGSAMLLRGKSPAQQGNNVSEAPLPVSEMAMVLTLDQLRPNPDNPRKSRNPRFDEIKASIRARGLDSIPKVTRDPEGDDVYIFSDGGNTRYQILCELWQETGEERFYRVHTIFKPWPGRLKCLVGHLAENEVRGDLTYLDKALGVHNARTIQEELLGHSVSLRELSDLLNLEGYPIHASSISRMEDTLKYLYPSMPELLESGLSRTQVIPLLNLRSLAEKVWLKFQLAEDTVDNFQSVFSQTCSLFNDPDSYTLEHFRDEFIGHLIKALPHPSLNYDRWLIELDPKEQKRREQFGEPPAMPPLTLTRLSEGSGGKAPPVTVLPDDPTAVTPVTGLRSGTLTGSTRPEPAPEPAGLTLLPDSTGISAGSLPRSEIQNDLFGGRSVITGDGVSTSSEHGADLVSSGSHSLVSAFSEHDDSAPVSTGSVSFAETGLEPVSDIWLIPAMQDDVEHLQDMAYRLVYEIAEGMGCVSDISEDKSPESAGFSVSGGSREFSLFLSGLSGCLPNQQCNMFMFCLNFFGSQKPADTPVFDDVMVVKMMRLIRIIRRLRELQRLAAKGGENV
>NZ_CP022427.1|WP_024471386.1|284288_285653_-|replicative-DNA-helicase
MSDNRRNIPGLYALDAEQSVIGGLMLDNDCWDEVVMRLGPDDFFHKAHREIFNGMSHLVAAGRPIDLLTLTESIESRGKNLLEQLGGFAYLAELAKNTPSVANITHYCDIVARYSRGRQLAAIGSEIHASATAPGADIAAAMETAERKITQLAERAEPQQGVTIVDGLEKLAAELERRCQTPDGITGTPTGFDDLDAFTSGLQPGDLVLVAARPSMGKTALLINIIMNSLMKNLASNSQFYSLEQPEEQILMRVVSSLGNVDLTRMKSGMMDEEDWARVSNVFKLLTEDIKERLLIDDTSDLTPAMLRVRARRNARRYGKPDIIGLDYLQLMRCPDQENRTQEIAEISRSLKALAKEMGCPVVALSQLNRALESRADKRPNNGDLRDSGALEQDADVIIFVYRDEVYKENSPDKGLAELIIGKQRQGPTGTLRLRFEGRYTRFENLQSDVGRYA
>NZ_CP022427.1|WP_024471387.1|285645_286533_-|ParA-family-protein
MHSKTKVIPVVSTKGGEGKSTQTANLGGFLADAGLKVLIIDGDHAQPTASSIFPLTYEAPCGLYELLMQNADLSVADNIISRTAIDNLHLIASNDPRNLLPTHMLNVPDGRVRLRNALSAPLFKSYDVILIDSQGAKSVMLELIILASTGEMIGMVKPVLPDVREFLRGTVALMEDLRSYSAFGIRLPAVRMLVNCMKYTALAKTTFEQAEAIINSREYSAHADEIAISMLQTRIYDLTVYEQGHASGLPVHRLESKTSRVSDSAFDSMHKLASELFPEFKERFDSFAVRGGCHV
>NZ_CP022427.1|WP_022623155.1|286942_287251_+|hypothetical-protein
MMKRTLFLGILYPALAFSDTPGFMTPEVECLNDNTIPFISTKIPAQKIVDDAYIKCKSELDAWSKSREMLPKEIRESQYKEFHDFYIRMIEKRRAYEAKNSA
>NZ_CP022427.1|WP_022623154.1|287424_288033_-|hypothetical-protein
MAKYVFLLLPIIISFLSYIQSLKKDNLNLISELTKEISSKRPNPYVVESLVSKIHFMRPIPYKYLIIILRKNNSYEILTHLSRCRRFLNLVSPVIINRNIIFEYTSPFSTKLRRFFCLLICVTIAGFCFSETLNLTALAFDNYRMIEFYEQAKSYKLNLERFDMAINIMKAFVTFILYFIFSMQFINISASMWRVKIINKLV

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Crispr_ID: NZ_CP022427_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022427_3

2951036-2951175

Unclear

Consensus_repeat	Method
TGCCAGCACGTTCTGCACTTAACTGGCAAAGCGTATCTGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022427_3

>merge|NZ_CP022427|3|2951036-2951175|CRISPRCasFinder
TGCCAGCACGTTCTGCACTTAACTGGCAAAGCGTATCTGACGCTTCTCTGGCCACGGATTTGTCATCATGGTAAGCGTCGATAAATGCCTTGTTTTTGCTGCCAGCACGTTCTGCATTTAACTGGCAAAGCGTATCTGAC

>NZ_CP022427|3|3|2951036-2951175|CRISPRCasFinder
TGCCAGCACGTTCTGCACTTAACTGGCAAAGCGTATCTGAC	GCTTCTCTGGCCACGGATTTGTCATCATGGTAAGCGTCGATAAATGCCTTGTTTTTGC
TGCCAGCACGTTCTGCATTTAACTGGCAAAGCGTATCTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022427.1\|WP_081015268.1\|2953989_2955018_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP022427.1\|WP_013024838.1\|2944505_2944796_-\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_CP022427.1\|WP_013024822.1\|2956487_2956802_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_CP022427.1\|WP_014606461.1\|2944948_2945140_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182421
NZ_CP022427.1\|WP_013024821.1\|2956805_2958110_-\|PTS-cellobiose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP022427.1\|WP_014593048.1\|2945251_2945776_-\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153
NZ_CP022427.1\|WP_022622675.1\|2946058_2946778_+\|DUF2076-domain-containing-protein	unknown	unknown	gnl\|CDD\|370723
NZ_CP022427.1\|WP_014606466.1\|2951652_2951904_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|337856
NZ_CP022427.1\|WP_013024839.1\|2943558_2944470_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP022427.1\|WP_014593043.1\|2950564_2950819_-\|anti-adapter-protein-IraP	unknown	unknown	gnl\|CDD\|236666
NZ_CP022427.1\|WP_014593046.1\|2946779_2947229_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP022427.1\|WP_013024819.1\|2958914_2959094_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_089517549.1\|2948387_2949920_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP022427.1\|WP_042677567.1\|2955043_2956474_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP022427.1\|WP_015700863.1\|2951916_2952237_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_014606464.1\|2950142_2950445_-\|phosphate-starvation-inducible-protein-PsiF	unknown	unknown	gnl\|CDD\|183165
NZ_CP022427.1\|WP_014593045.1\|2947525_2948338_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP022427.1\|WP_014606469.1\|2953262_2953910_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP022427.1\|WP_014606468.1\|2952445_2952742_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288556
NZ_CP022427.1\|WP_014606473.1\|2958194_2958503_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906

Protein	Function_ID	Function_description	E-value
NZ_CP022427.1\|WP_081015268.1\|2953989_2955018_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.96014e-105
NZ_CP022427.1\|WP_013024838.1\|2944505_2944796_-\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	1.23427e-64
NZ_CP022427.1\|WP_013024822.1\|2956487_2956802_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	6.12884e-33
NZ_CP022427.1\|WP_014606461.1\|2944948_2945140_-\|hypothetical-protein	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	8.38434e-27
NZ_CP022427.1\|WP_013024821.1\|2956805_2958110_-\|PTS-cellobiose-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	1.53528e-141
NZ_CP022427.1\|WP_014593048.1\|2945251_2945776_-\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.13601e-93
NZ_CP022427.1\|WP_022622675.1\|2946058_2946778_+\|DUF2076-domain-containing-protein	gnl\|CDD\|370723	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076). This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins.	1.24103e-59
NZ_CP022427.1\|WP_014606466.1\|2951652_2951904_+\|hypothetical-protein	gnl\|CDD\|337856	pfam10798, YmgB, Biofilm development protein YmgB/AriR. YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).	2.22548e-09
NZ_CP022427.1\|WP_013024839.1\|2943558_2944470_+\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	0
NZ_CP022427.1\|WP_014593043.1\|2950564_2950819_-\|anti-adapter-protein-IraP	gnl\|CDD\|236666	PRK10244, PRK10244, anti-adapter protein IraP.	3.96403e-29
NZ_CP022427.1\|WP_014593046.1\|2946779_2947229_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.80968e-78
NZ_CP022427.1\|WP_089517549.1\|2948387_2949920_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	1.57543e-47
NZ_CP022427.1\|WP_042677567.1\|2955043_2956474_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP022427.1\|WP_014606464.1\|2950142_2950445_-\|phosphate-starvation-inducible-protein-PsiF	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	1.71388e-21
NZ_CP022427.1\|WP_014593045.1\|2947525_2948338_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	3.98565e-124
NZ_CP022427.1\|WP_014606469.1\|2953262_2953910_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	4.3828e-13
NZ_CP022427.1\|WP_014606468.1\|2952445_2952742_-\|hypothetical-protein	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	7.27993e-09
NZ_CP022427.1\|WP_014606473.1\|2958194_2958503_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.4088e-44

>NZ_CP022427.1|WP_014593043.1|2950564_2950819_-|anti-adapter-protein-IraP
MKNLIAELLITLAEKEEASKEQVVQIEALELVITAMLRMMPPEQHQSLVNSIDTAMIHAGVDHNDHNAALLKNAVTRLLHRPHS
>NZ_CP022427.1|WP_014606464.1|2950142_2950445_-|phosphate-starvation-inducible-protein-PsiF
MKGNILMIVLAGIMMSSHASAADKTPQQQKMAMCNEHASSQSLKGDVRKQFMSDCLKKDSKVADMSPQQIKMKTCNLQAGDKKLTGDARKTFMSQCLKKS
>NZ_CP022427.1|WP_089517549.1|2948387_2949920_-|pyridine-nucleotide-disulfide-oxidoreductase
MNYQFVIALKDLPQRQPVKKKLGETEFLLIREADSVQAFQAKCPHAGAPLEQGAICGDRLICPWHKAAFELSSGKMCEPLALADLKQYPVRIENGQILVNPKAMSPASPVGSGASAPVFVVLGGGAAGSAALWRLRHDGFKGRLVLVESEPEAPYDRTALTKFVPSGKMDIDDVPSLLGSDILDHVERIQKRVERVDNEAHRLVFADDSTLQFDKLLIATGAEPAKPSIAGADLAGVHILRNKQHTASLLAAVDRSQQIVIIGNSFIGMELASSLRNRDVEVTVIARHALPFAAQFGEAIGRYFHQLHQANGVTFVEGEIASLQGENHVTGVRLKTGQQIAADVVLFATGVKPATSFIHDLPRVEDGSLQTDEQLRVAENVWVAGDIATYPSAQGPLRIEHFRVAEQQGQTAAMNMLGNIHHYDRVPFFWTAHYGTRYEYIGHATDWDDYQQVGSLEEKTFMAFYGKEGRLAAVFSCGLYTLTAALVEKMQEPMTMEQALAWYQAHHSAQ
>NZ_CP022427.1|WP_014593045.1|2947525_2948338_+|pyrroline-5-carboxylate-reductase
MLEKKIGFIGGGNMAKAIIGGLINSGQMTPSAIWIYDRKPSTNQQMAEQYGINAAESAEALAQHVDILFGAVKPNVILKVLKELANSLKKEAVVVSIAAGVTLDNLASVLGHDRKIIRAMPNTPSLVGEGMTSVTPNVLVEQSETDEVVAIFESFGQAAVVDEYLIHSVVGVSGSAPAYVFMFIEAMADAAVAGGMPRAQAYRFAAQAVKGSAQMVLETGKHPGELKDMVCSPGGTTIEAVKVLEEKGFRSAVIEAMQQCMAKSDKLSRS
>NZ_CP022427.1|WP_014593046.1|2946779_2947229_-|YaiI/YqxD-family-protein
MSIWVDADACPNVIKDVLYRAADRTQTMVTFVANQFLRVPPSPWLRTLQVPAGFDVADNEIVKRVQAGDLVITADIPLAAEVIEKGASALNPRGERYSPATIRERLTMRDFMDTMRASGVQTGGPAAMSPRDRQQFANELDSWLRQRQR
>NZ_CP022427.1|WP_022622675.1|2946058_2946778_+|DUF2076-domain-containing-protein
MQREEQELIENLFSRLKQAESQTAARDAAAEQLIKQHLQAQPGAPYYMAQAILIQEAALKKLNERVQELENHLAQQQAQQQQQPKSSGGFLSSLFGGGSQQAQPAQPSPQWNSAPQQPPQQPYASAPAPRGSGFLGGALQTAVGVAGGVVMADMLTSMFHHSQPEEIVNIINEPQSLPQVDDSLNTFNGGNDQSFLDQGTGADNQSFLDQSNGWSDTYADNGDLNDFGGNDYDDDDSFV
>NZ_CP022427.1|WP_014593048.1|2945251_2945776_-|shikimate-kinase-AroL
MSLSIFLIGARGCGKTTIGEALSHALGYAFRDTDHHLQFTTQRTVAEIVAAEGWESFRARETDSLKAVTAPSTIIATGGGMVLAEGNRRYMREHGQVIWLSAPPDILARRLESQPENAQRPTLTGRPIAEEMGEVLRARAHLYRSAAHHEVNAMLAPERVVEQILQSLSLARAS
>NZ_CP022427.1|WP_014606461.1|2944948_2945140_-|hypothetical-protein
MPTRPPYPREARVVTVEKGPEGKKVTSWQLRADHPKPDSLISEHESEQEAHDAKDRYEDVEKE
>NZ_CP022427.1|WP_013024838.1|2944505_2944796_-|pyrimidine/purine-nucleoside-phosphorylase
MLNVSEYFDGKVKSIGFDSASTGRASVGVMAEGEYTFGTAQPEEMTVVSGSMKVLLPGETEWKWFEAGSVFNVPGHSEFHLQVGEPSAYLCRYLKD
>NZ_CP022427.1|WP_013024839.1|2943558_2944470_+|recombination-associated-protein-RdgC
MLWFKNMMVYRLNRDIPLSADDMEKQLEAFTFSPCGSQDMSKTGWVAPMGNRSDALTHVNNGQIVICARKEEKILPSPVVKQALEAKIDKLEAEQSRKLKKTEKDSLKDEVLHSLLPRAFSRFSQTYMWIDTVNNLIMVDCASAKKAEDTLALLRKSLGSLPVVPLTLESPIELTLTEWVRSGDVPAGFALMDEAELKAILEDGGVIRCKKQDLVCDEIANHIEAGKLVTKLALDWQERIQFVLSDDGSVKRLKFSDTLRDQNDDIDREDFAQRFDADFILMTSELAALTSNLVEALGGEAQR
>NZ_CP022427.1|WP_014606466.1|2951652_2951904_+|hypothetical-protein
MRVQSNSASRAITDYFNSPDWNVPPESDLLAVIMRELMEAGQPTTNKAVIARVINKLEFEGDEQRLQRYRALLARLMEARPHE
>NZ_CP022427.1|WP_015700863.1|2951916_2952237_-|hypothetical-protein
MEYFQRISVLFLLLVSPVALASSPEAWQKSQQVMRQACINASTLSKVKVLGQVVEYDDSVGYSALLLEGLYPQKHMKNRRGRELCLFQRSSGRASVSEANQYRLAK
>NZ_CP022427.1|WP_014606468.1|2952445_2952742_-|hypothetical-protein
MNHYGKALVAAGFLLLTGCQSATQSDKAAVPLDAQADSCGASQYQHFVGKPLSAIDNQRFTQKVRAIPWNSAVTMDFNFTRLNFMADKSGNISRVYCG
>NZ_CP022427.1|WP_014606469.1|2953262_2953910_+|CPBP-family-intramembrane-metalloprotease
MNTNSDRVTLTLFYVGSFVVYYLVTMLITLFPNYGILRNDGLLVPVLCLFEFAVIYPLYRFYCQRRTDIPLGFLRSGQTLLFIGALFILMAAQTQYLQPEGWLVAQTQQGRSSMLILLLTAVLLAPVFEEVLFRGFLLQGFLLWAPNSRFACMLLTSLLFALMHTQYVHWETVVALTLFSLLLCYARLRSNSLALPVFLHTLNNLIAILPAWYFA
>NZ_CP022427.1|WP_081015268.1|2953989_2955018_+|LacI-family-transcriptional-regulator
MVCKPMITMLDVARKAGVSKATVSRVLAGNRYVSKSTQQKVYQAIAETGYRPNLLARSLATQKSQNIGLIVTHSLFNGPYFSELLFQAATLTNNYGRQLILADGKTCADDERAAIEFLLDLRCDAIIIYPRFLDTEALDAIIEQHDIPIMVVNRQLPRHPAHCVWATHQHNTFQATRYLIARGHHDIAFIRGMTGSPTAAARLAGYEQALAEQGLADRACIVQGAWTPASGMAAAKQLLDAGVTFSALMASNDDMAIGAALALHAAGKRLPQDVSLLGFDDIRMAEFFLPPLTTVHVPVAEMIQHTLAQLVAMLEGQEVEALPPFSGDLIERASVADGPHKR
>NZ_CP022427.1|WP_042677567.1|2955043_2956474_-|glycoside-hydrolase-family-1-protein
MQHSTLTAFPDGFLWGASTSAYQVEGGWDADGKGPSVIDKATFSQAITDFTVCSDHYHRFKEDIALLAEMGLKTYRFSIAWSRLYPEGDGALNEAGVAFYQQLIDEICRHDITPLVTLYHFDLPWALQQDGGWSSRRTVAAFERFAITCFEQYGSQVKYWLTINEQNMMILKGDVIGTLPAGTADPQKTLYQQNHHMMLAQAKAMIACHERLPDAKIGPAPNISCVYAASSRPEDVLAADNFSAIRNWLYLDLAVHGRYNPVVWAFLKQRGWLPTIEDEDMAIIAAGQPDFIAFNYYASATVGAEGEHHDPDSRPHADQQMAGIDRSVYVGCNNPHLQQNQFGWYIDPVGFRITARQIYARYALPLIVTENGLGAFDTLAADNKVHDDYRIDYLREHIAQLQLAIADGVELFGYCPWSAIDLVSTHQGISKRYGFIYVNRDEKALKDLARYRKKSFFWYQKLIRSNGATLNASVDY
>NZ_CP022427.1|WP_013024822.1|2956487_2956802_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MEIDESTVIELIIQAGEARSCSMEALRAARQQNWERADSMLTAATAAAKAAHQIQTRLIGADEGSGKIPVNLIMVHAQDHLMNAMLCRELAEEIIQLRRELAAR
>NZ_CP022427.1|WP_013024821.1|2956805_2958110_-|PTS-cellobiose-transporter-subunit-IIC
MSRLSESLFGVIENRISPLAGRLSSQRHVIAIRDGFIASMPFLIVGSFMLLFAHPPFSADSSWAFAQWWLGMVKAHEEQIMMPYNMTMGIMALYIASAIAYNLANSYKMNGFMAASLSLMAFLVVAAPQTGKMLPVGSLGGEGIFTAILVALFATELMHFLQKHNIGFKLPEQVPPKIRQSFDLLIPIITIFITLFPLSLWVQAQFGMLLPQAIMAIFSPIISASDSLPAVLVAVLLCHLLWFAGIHGAVIVGGILQAFWLTNLGLNQQALNAGEPVSHVFIEPFWQFFIVIGGSGSTMGLVLLYLRSQSAHLRSIGKLSIVPSMFNINEPVIFGSPVVMNPILFIPFVLAPLVNAVIAWIATKTNLINHVISLAPWTTPAPIGAAWSTGWDWRVIVLIAVLVTIATLIYYPFFKMYERQLLQQELSAAQPVKE
>NZ_CP022427.1|WP_014606473.1|2958194_2958503_-|PTS-sugar-transporter-subunit-IIB
MPKILLCCAAGMSTSMVVQKMEKAAKEQGIAVEIKAVGIEEFTDLIADYDCCLLGPQIKYKLADFEPVAQQHSKPIAVINSMDYGMMKGEKILSDALKLIHS
>NZ_CP022427.1|WP_013024819.1|2958914_2959094_+|hypothetical-protein
MLIGFVLLVSACGHDACEALPVSERIYPTKAACEVMANRIHKVRPNVVLLCGEVHRSDN

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Crispr_ID: NZ_CP022427_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022427_4

3367563-3368785

Orphan

Consensus_repeat	Method
GTCTGGGTACTGCCGTAACCGGC	CRISPRCasFinder

25 spacers

The CRISPR arrays of NZ_CP022427_4

>merge|NZ_CP022427|4|3367563-3368785|CRISPRCasFinder
GTTGAGGTGCTGCCGTAACCGGTCGTCAGCACACTCTGTTCGCGCGCCGTCTGCGTACTGCCGTAGCCCGCCGTCAGGCTACTGTGATAACTGGCGGTCTGGGTGCTGCCGTAACCTGCAATGATTGAGCTGTCCGAGCCTGCCGTGCCGGTGCTGCCGTACCCGGCAGTGAGGTCACTGCCTTCTCTCGCCGTCTGGGTACTGCCGTAGCCTGCCGTTAGCACACTGTTGTAGCTGGCTGTCTGCGTGGTGCCATAGCCTGCGATCAGTGAACTATTTGCCCCGGCTGTAGACGTACTGCCATAGCCGGTGATGAGATCGCTTTCGTTCTGCGCGGTCTGTGTACTGCCGTAACCCGCTGTCAGCGTGCTACCGTAACCCGCTGTCTGGGTACTGCCATAGCCCGCGATCAATGAACTTTCATAGCCTGCCGTAGAGGTACTGCCATAACCTGCAGTAAGATCGCTGCCCTTCTGCGCGGTCTGGGTACTGCCGTAACCGGCTGTCAGCGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGGGAGCTGTCGTCACCCGCCGTACCGGTACTGCCGTAACCGGCCGTAAGGTCGCTGCCCTTCTGCGCGGTCTGGGTGCTACCATAACCGGCTGTCTGGGTGCTCTCTTCCCCGGCCGTCTGGGTGCTGCCGTAGCCCGCAATTAATGAACTGTCGGCACCCGCCGTGCCGGTACTGCCATAACCGGCCGTAAGATCGCTGCCCTTCTGCGCGGTCTGGGTACTGCCGTAACCGGCTGTCAGCGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGGGAGCTGTCGTCACCCGCCGTACCGGTACTGCCGTAACCGGCCGTAAGGTCGCTGCCCTTCTGCGCGGTCTGGGTGCTGCCATAACCGGCTGTCTGGGTGCTCTCTTCCCCGGCCGTCTGGGTGCTGCCATAGCCCGCGATTAATGAACTGTCGGCACCCGCCGTGCCGGTACTGCCATAACCCGCGGTAAGATCGCTGCCCTTCTGCGCGGTCTGCGTGCTGCCGTAACCGGCTGTCAGCGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGGGAGCTGTCGTCACCCGCCGTGCCGGTACTGCCGTAACCGGCGGTGAGATCGCTGCCTTTCATGCCGGTCTGCGTGCTGCCGTAACCCGC

>NZ_CP022427|4|4|3367563-3368785|CRISPRCasFinder
GTTGAGGTGCTGCCGTAACCGGT	CGTCAGCACACTCTGTTCGCGCGCC
GTCTGCGTACTGCCGTAGCCCGC	CGTCAGGCTACTGTGATAACTGGCG
GTCTGGGTGCTGCCGTAACCTGC	AATGATTGAGCTGTCCGAGCCTGCC
GTGCCGGTGCTGCCGTACCCGGC	AGTGAGGTCACTGCCTTCTCTCGCC
GTCTGGGTACTGCCGTAGCCTGC	CGTTAGCACACTGTTGTAGCTGGCT
GTCTGCGTGGTGCCATAGCCTGC	GATCAGTGAACTATTTGCCCCGGCT
GTAGACGTACTGCCATAGCCGGT	GATGAGATCGCTTTCGTTCTGCGCG
GTCTGTGTACTGCCGTAACCCGC	TGTCAGCGTGCTACCGTAACCCGCT
GTCTGGGTACTGCCATAGCCCGC	GATCAATGAACTTTCATAGCCTGCC
GTAGAGGTACTGCCATAACCTGC	AGTAAGATCGCTGCCCTTCTGCGCG
GTCTGGGTACTGCCGTAACCGGC	TGTCAGCGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGGGAGCTGTCGTCACCCGCC
GTACCGGTACTGCCGTAACCGGC	CGTAAGGTCGCTGCCCTTCTGCGCG
GTCTGGGTGCTACCATAACCGGC	TGTCTGGGTGCTCTCTTCCCCGGCC
GTCTGGGTGCTGCCGTAGCCCGC	AATTAATGAACTGTCGGCACCCGCC
GTGCCGGTACTGCCATAACCGGC	CGTAAGATCGCTGCCCTTCTGCGCG
GTCTGGGTACTGCCGTAACCGGC	TGTCAGCGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGGGAGCTGTCGTCACCCGCC
GTACCGGTACTGCCGTAACCGGC	CGTAAGGTCGCTGCCCTTCTGCGCG
GTCTGGGTGCTGCCATAACCGGC	TGTCTGGGTGCTCTCTTCCCCGGCC
GTCTGGGTGCTGCCATAGCCCGC	GATTAATGAACTGTCGGCACCCGCC
GTGCCGGTACTGCCATAACCCGC	GGTAAGATCGCTGCCCTTCTGCGCG
GTCTGCGTGCTGCCGTAACCGGC	TGTCAGCGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGGGAGCTGTCGTCACCCGCC
GTGCCGGTACTGCCGTAACCGGC	GGTGAGATCGCTGCCTTTCATGCCG
GTCTGCGTGCTGCCGTAACCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022427.1\|WP_089517617.1\|3376387_3377149_+\|2-deoxy-D-gluconate-3-dehydrogenase	unknown	unknown	gnl\|CDD\|181605
NZ_CP022427.1\|WP_026021058.1\|3360358_3361756_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP022427.1\|WP_013024487.1\|3364063_3365317_+\|D-galactonate-dehydratase-family-member-RspA	unknown	unknown	gnl\|CDD\|239438
NZ_CP022427.1\|WP_013024491.1\|3359548_3360259_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP022427.1\|WP_089517618.1\|3384308_3385349_+\|serine-kinase	unknown	unknown	gnl\|CDD\|225213
NZ_CP022427.1\|WP_014595262.1\|3362971_3363739_-\|KR-domain-containing-protein	unknown	unknown	gnl\|CDD\|187605
NZ_CP022427.1\|WP_029568424.1\|3377579_3378659_+\|glycosyl-hydrolase-family-88	unknown	unknown	gnl\|CDD\|226678
NZ_CP022427.1\|WP_014606656.1\|3355497_3356208_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP022427.1\|WP_014595250.1\|3382737_3384102_-\|ethanolamine-permease	unknown	unknown	gnl\|CDD\|129986
NZ_CP022427.1\|WP_014606658.1\|3358603_3359272_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|236680
NZ_CP022427.1\|WP_014595257.1\|3373509_3374469_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_028716025.1\|3375495_3376332_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
NZ_CP022427.1\|WP_014595263.1\|3361898_3362930_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_CP022427.1\|WP_014595268.1\|3356351_3356858_-\|membrane-protein	unknown	unknown	gnl\|CDD\|378715
NZ_CP022427.1\|WP_013024496.1\|3355028_3355475_+\|DUF1640-domain-containing-protein	unknown	unknown	gnl\|CDD\|369525
NZ_CP022427.1\|WP_014606667.1\|3381333_3382674_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223238
NZ_CP022427.1\|WP_089517615.1\|3356989_3358132_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP022427.1\|WP_014606662.1\|3374478_3375075_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_014595259.1\|3369918_3371256_-\|nitrate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP022427.1\|WP_024472324.1\|3378688_3381178_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022427.1\|WP_026021058.1\|3360358_3361756_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.58011e-144
NZ_CP022427.1\|WP_013024487.1\|3364063_3365317_+\|D-galactonate-dehydratase-family-member-RspA	gnl\|CDD\|239438	cd03322, RspA, The starvation sensing protein RspA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.	1.34263e-173
NZ_CP022427.1\|WP_013024491.1\|3359548_3360259_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	5.11816e-52
NZ_CP022427.1\|WP_089517618.1\|3384308_3385349_+\|serine-kinase	gnl\|CDD\|225213	COG2334, COG2334, Putative homoserine kinase type II (protein kinase fold) [General function prediction only].	1.05499e-44
NZ_CP022427.1\|WP_014595262.1\|3362971_3363739_-\|KR-domain-containing-protein	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.4571e-101
NZ_CP022427.1\|WP_029568424.1\|3377579_3378659_+\|glycosyl-hydrolase-family-88	gnl\|CDD\|226678	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only].	2.74178e-94
NZ_CP022427.1\|WP_014606656.1\|3355497_3356208_-\|N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.57583e-26
NZ_CP022427.1\|WP_014595250.1\|3382737_3384102_-\|ethanolamine-permease	gnl\|CDD\|129986	TIGR00908, putative_ethanolamine_permease, ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. [Transport and binding proteins, Amino acids, peptides and amines].	1.3217e-174
NZ_CP022427.1\|WP_014606658.1\|3358603_3359272_+\|YecA-family-protein	gnl\|CDD\|236680	PRK10396, PRK10396, hypothetical protein; Provisional.	2.83561e-146
NZ_CP022427.1\|WP_089517617.1\|3376387_3377149_+\|2-deoxy-D-gluconate-3-dehydrogenase	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	4.75122e-168
NZ_CP022427.1\|WP_028716025.1\|3375495_3376332_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
NZ_CP022427.1\|WP_014595263.1\|3361898_3362930_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP022427.1\|WP_014595268.1\|3356351_3356858_-\|membrane-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	9.97795e-17
NZ_CP022427.1\|WP_013024496.1\|3355028_3355475_+\|DUF1640-domain-containing-protein	gnl\|CDD\|369525	pfam07798, DUF1640, Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.	3.82631e-07
NZ_CP022427.1\|WP_014606667.1\|3381333_3382674_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	2.24036e-149
NZ_CP022427.1\|WP_089517615.1\|3356989_3358132_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.86177e-45
NZ_CP022427.1\|WP_014595259.1\|3369918_3371256_-\|nitrate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.10133e-115

>NZ_CP022427.1|WP_013024487.1|3364063_3365317_+|D-galactonate-dehydratase-family-member-RspA
MSNLFITNVKTILTAPGGIDLVVVKIETNEPGLYGLGCATFTQRIYAVQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVNDKPGLGIDINEALAAKFPCEGGNPTWTMARTPDGTVWRP
>NZ_CP022427.1|WP_014595262.1|3362971_3363739_-|KR-domain-containing-protein
MTAMFDLTGKTALITGSSRGLGFAYAEALAAAGAEVILNGTREAVLNEAVEQLKNKGYRVSGRVFDVTCESAIEQVFASLDEQGIAVDIVINNAGIQYRKPMLELELENWQKVIDTNLTSAFLVSRAAAKRMIARDRGGKIINVGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNSALVDDARFDSWVKSSNPSQRWGRPEEVAGTAVFLSSPASDYINGQIIYVDGGWLAVL
>NZ_CP022427.1|WP_014595263.1|3361898_3362930_-|L-idonate-5-dehydrogenase
MTHACVAKGKKEIAVEQRELKYSDDDVVVQVECGGICGSDIHYYHEGRAGLSVIKQPLVIGHEFVGRIFQAPAASGLEPGQKVAINPSQPCGQCEYCRAGKQNACATMRFMGSAQFTPHVNGGFAQYVVVPAKQCVAYDEQVPASVMAVAEPTAVVIHALNVAGSIVGKRVLVMGAGPIGALAIAAASASGAAEIVAFDPSERCRRIAVEMGADSAVDASDRAAVARYGENRGYFDVTLEASGAEAAIESSILVTRPGGVVVQIGMGKSPLNFPVAQMLVKEISWKGSFRFIDEFDVAVKWLEKGIIDPRPILSGNYAYHDIEAALKAASDKTQHSKVLVQFS
>NZ_CP022427.1|WP_026021058.1|3360358_3361756_-|MFS-transporter
MSHLNTNTTERNTSDLVRASVSGWLGTTLEFMDFQLYSLGAALVFHEVFFPEQSGAMALILAMGTYGAGYIARIVGAVFFGKMGDRVGRKKVLFITIALMGVCTTLIGVLPTYQQVGILAPLLLVALRIIQGLGAGAEISGASTMLAEYAPKGKKGIIASLVAMGTNCGTLSATAIWAAMFFFFTNDEVIAWAWRIPFLASFVVMGFAIWLRFNLKESPVFENVAESATVKPHDQPAQSVFQLIKGKAFWIATGLRFGQAGNSGIIQTFLAGYMVQTLLFNKAVPTDAIMVSSVIGFMTIPLIGWLSDRIGRRIPYRILTLGSIILAYPMVSLIVDNAQAVSTIMVCLIVIHNIAVLGQAAIEGITMAEMFGSRNRFAQMAISKEIGGLFATGLGPLLAGIFCQLTGTWYPIAIMLIGYSCIGLLASLIMPEVVDRDLTAEADASGGVPDGCHPVAPSIRAGSGE
>NZ_CP022427.1|WP_013024491.1|3359548_3360259_-|FadR-family-transcriptional-regulator
MSIKSIQKQNVVNEVFEQIKAKLLDGSWSAGTRLPSEAELTHSFNVSRVSIRSAVQRLRDLGIVITRQGSGSYVCEDFSPQMLNHNARPLMHLSREAFNDMMVFRQTVEFKCVELAVEHATEEDIGLLEQALNNMLINKGDYKKYSEADYEFHLAIIRASHNSVFYNVMKSIKDIYYYYLEELNRSLGITLESVEAHIKVFMAIKNRDASSAVQVLNEAMKHNVVAIDMIKKEEGE
>NZ_CP022427.1|WP_014606658.1|3358603_3359272_+|YecA-family-protein
MKEGPLSEKELQWLEDMLEKYGSEASILDVSELDGLLTAVLSGPTTVEPSRWLVALWGGEKHIPKWSNEREMTRFMELSFQHMNDIADRLSEFPEQFEPLFGVREMEGLEFTVVEEWCYGYMRGVALTDWSALPAELQDSLDAIALHGTEENLEKVDALTPEEMESSIDAIRPAALALHDYWISQPEAIPQVQQPVTAEKQPGRNDPCPCGSGRKYKQCCLH
>NZ_CP022427.1|WP_089517615.1|3356989_3358132_-|serine-hydrolase
MISALLLAACGTLSQTSAPAGDKLYLTHSDFHDNLDDLVRHYMQRKQVSGISIAIIHHLNPTLFYSAGVTDDVHRYPITPETLFALGSLSKGVTAEVIIELVNEGQLHWSDTLADLLPSDVRLSQDARQITLLQLVTHTSGLPRQDMDLPMFMQFMGYLRSGQNFYGNLDSDDVLEYLADFSAPRQRGAQYSNLGYALLGYILRERCHSDIETLAHQRIFRPLGMSNTSFVPERLSGFSTRALGHAGDQPKLIPRGDLTPDWRFQHNMVAAGSLYSNARDLSIYLRAHLTAGSDPARNRAFAEINKGIYQQGAQTQNIAWVTDRLAGRNITYQVGYIGGYSAFIGFDKQAGNAIVVLQNAFNWSNYLGITLLLNLAEKDR
>NZ_CP022427.1|WP_014595268.1|3356351_3356858_-|membrane-protein
MRRTQIAFISAGLLFGSLSLIPAAQAAGETTDNVPPPPQIQPANPTAQPGDNNAQPGAAAPAQPQAPMSSDSNDGITPTTPSQSAGNPGKPNYDLSTIIIDYKEHKIGDTVPDKYRSKTYTITEWQKRNLPAPQPDTHWAYINANYILITNDTGKIVMGKSGDIFFRG
>NZ_CP022427.1|WP_014606656.1|3355497_3356208_-|N-acetyltransferase
MMSQHVNQYGQPVGQSMPDWQPRPLPQREVLQGQVCRLEPFSVASHAEALWQAWSLAEDGRDWTYLSDGPFNDEAAWLTHAATMEASQDPLHFSVIDVETGKAVGTLSLMRVDAQNGVMEVGYVTFSRLLKQTRMATEAHFLLMRYAFEQLGYRRYEWKCDSCNLPSRRAALRLGFRFEGEFRQARVYKGRTRDTSWFSIIDSEWPAVKNGLERWLAEANFTADGRQREKLETLRG
>NZ_CP022427.1|WP_013024496.1|3355028_3355475_+|DUF1640-domain-containing-protein
MTLTMMNTHKAFKRLQRAGINDRQAEAMVDIFSALKQDNALSRADVMQAFQRQNQHIFSLSTQLKKTESCLRTDVDELKADVSVLKTDVAVLKTDVSVLKTDVAELKTDVSVLKTDVGSLKNDMRWVQRLLMIMTTTLLMATIKYVLA
>NZ_CP022427.1|WP_014595259.1|3369918_3371256_-|nitrate-ABC-transporter-ATP-binding-protein
MLNNPPTLNPDVSNRKPEGRKAVLTVKDIKHGYDKTHGEVLILDDVNLTLQEGEIVGLLGRSGSGKSTLLRIISGLITPGSGAVEYLGKPLNGPAKGVAMVFQTFALFPWLTVLQNVEAGLEALGVEKAERRKRALAAIDLIGLDGFENAYPRELSGGMRQRVGFARALVVDPTLLLMDEPFSALDVLTAETLRTDLLDLWNEGQMPMKSVLIVTHNIEEAVFMCDRILVLSSNPGRVVAEIKVPFGHPRNRLDPAFRRLVDDVYTQMTARPTSDNVKKSLRLGTHLPQVSTNLMAGLIETLAAAPYHGRADMPDVARSLHLEVDELFPIAEVLQSLGFADVREGDIFLTPPARVFAESDTQQRKVMFADHLLRYVPLAALIKTVLDERPGHRAPRMRFEQELEDSLADSAAKETLDSVINWGRYAEIFSYNDQTEYFSLEDVEF
>NZ_CP022427.1|WP_014595257.1|3373509_3374469_+|hypothetical-protein
MALPESYSNNLPDYGLGQRMGMVSADDIDFNALANRLDCTRDFSQVGIIYSDGLAQWLVRPSRRHAQASKSSVSHVIITKVNATNPQVAAKALTETLSKPSLASEITSTMFSCGALVVTGFLAFGSAAAVPLTAGASGVVAGMIIAGGLATGMQCAIGTARLYAIYEGNEDYVAWLDSQSWYVATTTALDVISLAGAGAGLKSAIETYKVMKASSSAKAFEWLKTLSRAERKRITEEIIRAQNPGISNGGIKAAMKAGVYPKRYPAEAIQKSLQRELTSALVNSSAFAGSALTGTLRNPQNIVQSGKYVIGVIQSLSST
>NZ_CP022427.1|WP_014606662.1|3374478_3375075_+|hypothetical-protein
MKYINKIIKLSEKTNKKIEVSGVDELENIKDDMKEKMGMPIGLHTFGAPLIISMVLTVISFSLPQFSFWLFIYDLMGWEQHAVFIGIIAAAFIYVLVLFTTMMMVSRGIYLALRAYIFILILALITALFFLLITMISSISGNNNYSLSFTGALLSIGLSLIALKCLNSEMFYKSCAFILHNRAWRKQLDLQRKTTAFR
>NZ_CP022427.1|WP_028716025.1|3375495_3376332_+|5-dehydro-4-deoxy-D-glucuronate-isomerase
MEVRQSIHSAHANALDTQGLRDEFLIEKIFVPDEFTMVYSHIDRIIVGGVMPVGQAVAIGNDVGKQLGVSYFLERRELGMINIGGPGQVTIDGEDYEIGHREALYIGKGAREVLFSSLAPHRPAKFYYNCAPAHKTLPIRKVTAGDAAAVTLGDNLTSNRRTINKYLVPDVLETCQLSMGLTQLEPGNLWNTMPCHTHERRMEVYLYFNMDDDACVFHMMGEPQETRHLLVHNEQAVISPAWSIHSGVGTKAYTFIWGTVGENQVFDDMDHVSVKDLR
>NZ_CP022427.1|WP_089517617.1|3376387_3377149_+|2-deoxy-D-gluconate-3-dehydrogenase
MILNAFSLQDKIAVVSGCNTGLGQAMALGLAEAGCNIVGINQVEPDETIKQVTALGRRFLSLKADLRNIDAIPALLDSAIACFDRIDILVNNAGMIRREDAINFSEQDWDDVMDLNIKSLFFMSQAAARHFIAQGDGGKIINIASMLSFQGGIRVPSYTASKSGVMGITRLLANEWAKHRINVNAIAPGYMATDNTQQLRADAKRSAEILDRIPAGRWGKPEDLMGPVVFLASRASDYMNGYTIAVDGGWLAR
>NZ_CP022427.1|WP_029568424.1|3377579_3378659_+|glycosyl-hydrolase-family-88
MELLSTARQLDLLLNGFTQLKDEGKFNEPNIDGTAGDYISFAHWEWPQGVGLFGLVRLWELTRRDDIYQIIENWFQQNIKKGLPPLNINTTAPMLPLSLLWAHNRAPHYQAVLDSWADRVMTELPRTPEQGFQHVVSDGINPMEIWDDTLFMVVLFLGHYGVASGRQALVDEAVRQFLLHARYLNDPQTGLWFHGWSFAEKSHFAQARWARGNAWITVGIIEFLELTQLRGGVRDYLLECLKTQINTLITLQSESGAWHTLLDHTDSYEEISATAGFGYGLLKGVRLGYGDERWLQAGLQALGAVRRNIDSSGTVHNVSYGTRMGRTLQFYKDIPLQPTGYGQALAILCLTEGLRHLKK
>NZ_CP022427.1|WP_024472324.1|3378688_3381178_+|hypothetical-protein
MDQNHYCYFPLNQNEAVRYWQLSAISSQRYDVPNAPMSGEMDPFFFLSQHKNFIPHTYPCRTQFQQHYAGKKPTPFGDTTLKNWWFPFGSDRVDLSGFWFRATRIGAQAETCLVAEQRGLYRFRLTTCGAACIRLNGGDVAWQADYQRNLESTVEFALMLDAGVNTIAVWFDDLAERDARFFFQLDYVEGAPLQVALATPIEADRVRQMEALLEGMAFEQPTYTGGTVRLCFPIPAPETLNLNIRVQGDFISLDQPVLLNAVLHQGETVAEIAESDALPADFRHFVISMEKDNFHIRRTLGVEICHAEQQAQVPKTADARADEALMHVALHGEYSSVKALARLACGRDDTETQNMLEGVLTPVEECHDCADFTLVPLLWCRIQWADRIAAPVREKMDRAILAFRYWMDEPGNDVQWYFSENHALLFHTAAYLAGSTFPDKTFVRSGRLGSDQAEAGRQRVLAWLDHFEQCEMAEWNSAPYFPIDLKGLTALAALAPDADIVARSQRAILRLLEQIARSSHQGMLTASQGRSYEHTLRAGRSLELSAISRLLWGKGNVGCRFHALPQLALLLKQGKLTLSPELAKVAVWQGDSALEWYFAQGLNRIARLYHYKTRDVAMGSLAGYRWGEWGYQETPIHLRIGETPEAQIWINHPGERLHSGFGRPSYWGGCGTLPRVQQYRGLAIVLFRVHEGQPDFSHAWLPQRYFDDVRCYDKRILLRSGKGMVQISGNRAFQRIAHGPTQHCEVRLPGQETCWLIRLNDDPRLDNLADFEARFAQLTVERREDGTFYVNDPQYGEVFFQPNGCVFGQGRLLDPDSWTISGDSHELPL
>NZ_CP022427.1|WP_014606667.1|3381333_3382674_-|aspartate-aminotransferase-family-protein
MTVRSTIMDTNSFRAENAEALAPAIRQLTDKRSKVLGESYRLFYRNPVHLVRGQGQYLWDQAGKQYLDMYNNVASIGHCHPAVVEAVHQQMMRLNTHTRYLHESILDYSERILATMPAAIDRAMYMCTGSEANDLAIRMAHAWSGGTGIIVSKEAYHGTSALTSGVSPALGSGQPLSSHTRLVASPDFYRIQPADQGAWFAHEIQKQIDDMAAHGIKFAGFLADSIFSSDGVLPGQPGFLKQAIDVVHQNGGIFIADEVQPGFARTGESFWGFARHGVVPDVVTTGKPMGNGIPVSGLMAKAPVMAAFSDSLPYFNTFGGNPVSMAAAHAVMDVIEQESLQAHSLKTGQALLAALQSLQDTYACVGDVRGAGLFIGFELVTDRETKQPDKRLALDLVEALREECVLTSVAGPYGNVLKIRPPLCFQTHDIDWVVSAMDRCLKKLQG
>NZ_CP022427.1|WP_014595250.1|3382737_3384102_-|ethanolamine-permease
MKEKLKPTLGTLRLWGIAVGLVISGEYFGWSYGWGAAGTLGFLVTTFFVAVMYTCFIFSFTELTTAIPQAGGPFAYSRRAFGDTGGLIAGIATLIEFVFAPPAIAMAIGAYLNVQFPEINPKLIAVCAYLVFMGLNIIGVSIAATFELLVTLLAVIELLVFMGVVAPGFSLANFVANGWAGQGTFSLASVSGMFAAIPFAIWFFLAIEGVAMAAEEAKDPRRTIPRAYISGILTLVVLAIGVMVFAGGAGDWRTLSGINDPLPQAMKMLVGNDSRWMHMLVWIGLFGLIASFHGIIMGYSRQFFALAREGYLPPALAKLSRFNTPHRAILAGGVVGILAIFSDGISFQGMSLTAAMITMSVFGAIVMYIMSMLSLFKLRRTAPTLERSYRAPGYPVIPAIALCGSLICLAAMLWFNPEIGALFMAFMVVGYLYFLTTQSRRGTIAQTSVAAEID
>NZ_CP022427.1|WP_089517618.1|3384308_3385349_+|serine-kinase
MLALHAETREPDMSHKQYDTLSNDTILQLAHRALVNYPACAQAEVRLLCRSENATLSVSTPQGRYALRIHRGDYHAKQDIESELLWLDALQVADISVPAAVEDRQGERIQVLPLPDGGERYAVLFHWIEGDMLTDSVDPAAFRQLGAITARLHHHSRKWQKPQGFRRIIWDHHTMVSPAGHWGDWRDVAGLPTAKHAVVEETLEHVRRQMLDFGQSPERYGLIHADLRLTNLLVHKGETRVIDFDDCGMGWYLHDLAAAISFVEHHPSAPQWVENWLRGYEQVAHISDRELAMIPAMLIQRRIQLTAWVASHRETEMARSLGDRWASHTVRLCQRYLEGAALPIGV

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Crispr_ID: NZ_CP022427_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022427_5

3525441-3525528

Orphan

Consensus_repeat	Method
CACCTGCGGCGCGAAGGACGCCCGCTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022427_5

>merge|NZ_CP022427|5|3525441-3525528|CRISPRCasFinder
CACCTGCGGCGCGAAGGACGCCCGCTTATTGGCTGGGGTGATGAGCCGCGGCAAAGGACACCTGCGGCGCGAAGGACACCCGCTTATT

>NZ_CP022427|5|5|3525441-3525528|CRISPRCasFinder
CACCTGCGGCGCGAAGGACGCCCGCTTATT	GGCTGGGGTGATGAGCCGCGGCAAAGGA
CACCTGCGGCGCGAAGGACACCCGCTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022427.1\|WP_071822330.1\|3524734_3524920_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_028715975.1\|3507403_3509554_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	unknown	unknown	gnl\|CDD\|181207
NZ_CP022427.1\|WP_089517665.1\|3535104_3535989_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP022427.1\|WP_089517660.1\|3517337_3518612_-\|multidrug-transporter-subunit-MdtA	unknown	unknown	gnl\|CDD\|183194
NZ_CP022427.1\|WP_014606741.1\|3532087_3532516_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP022427.1\|WP_013024363.1\|3532869_3533376_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP022427.1\|WP_013024364.1\|3532598_3532886_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP022427.1\|WP_014595176.1\|3511039_3514141_-\|multidrug-transporter	unknown	unknown	gnl\|CDD\|182589
NZ_CP022427.1\|WP_014606739.1\|3530285_3530753_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|236853
NZ_CP022427.1\|WP_029569509.1\|3509650_3511036_-\|RND-transporter	unknown	unknown	gnl\|CDD\|273830
NZ_CP022427.1\|WP_014595167.1\|3533369_3533945_-\|lipid-carrier-protein-YhbT	unknown	unknown	gnl\|CDD\|225696
NZ_CP022427.1\|WP_013024366.1\|3531526_3532048_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NZ_CP022427.1\|WP_013024371.1\|3523443_3524454_+\|HTH-type-transcriptional-regulator-GalR	unknown	unknown	gnl\|CDD\|182681
NZ_CP022427.1\|WP_072138512.1\|3534099_3535095_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP022427.1\|WP_089517826.1\|3520982_3523256_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-C	unknown	unknown	gnl\|CDD\|239170
NZ_CP022427.1\|WP_089517664.1\|3530744_3531380_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP022427.1\|WP_072136343.1\|3528150_3530289_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
NZ_CP022427.1\|WP_089517659.1\|3514137_3517341_-\|multidrug-transporter-subunit-MdtC	unknown	unknown	gnl\|CDD\|182501
NZ_CP022427.1\|WP_089517661.1\|3524991_3525177_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022427.1\|WP_014595174.1\|3518966_3520706_-\|cell-division-protein-FtsI	unknown	unknown	gnl\|CDD\|185060

Protein	Function_ID	Function_description	E-value
NZ_CP022427.1\|WP_028715975.1\|3507403_3509554_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	gnl\|CDD\|181207	PRK08043, PRK08043, bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase.	0
NZ_CP022427.1\|WP_089517665.1\|3535104_3535989_+\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	6.86575e-177
NZ_CP022427.1\|WP_089517660.1\|3517337_3518612_-\|multidrug-transporter-subunit-MdtA	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	1.01324e-126
NZ_CP022427.1\|WP_014606741.1\|3532087_3532516_-\|hypothetical-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.84363e-81
NZ_CP022427.1\|WP_013024363.1\|3532869_3533376_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.2473e-51
NZ_CP022427.1\|WP_013024364.1\|3532598_3532886_+\|hypothetical-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	9.6301e-33
NZ_CP022427.1\|WP_014595176.1\|3511039_3514141_-\|multidrug-transporter	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
NZ_CP022427.1\|WP_014606739.1\|3530285_3530753_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|236853	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein.	1.70374e-102
NZ_CP022427.1\|WP_029569509.1\|3509650_3511036_-\|RND-transporter	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	6.05087e-106
NZ_CP022427.1\|WP_014595167.1\|3533369_3533945_-\|lipid-carrier-protein-YhbT	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.54318e-54
NZ_CP022427.1\|WP_013024366.1\|3531526_3532048_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	3.45527e-83
NZ_CP022427.1\|WP_013024371.1\|3523443_3524454_+\|HTH-type-transcriptional-regulator-GalR	gnl\|CDD\|182681	PRK10727, PRK10727, HTH-type transcriptional regulator GalR.	0
NZ_CP022427.1\|WP_072138512.1\|3534099_3535095_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	2.04621e-106
NZ_CP022427.1\|WP_089517826.1\|3520982_3523256_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-C	gnl\|CDD\|239170	cd02769, MopB_DMSOR-BSOR-TMAOR, The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP022427.1\|WP_089517664.1\|3530744_3531380_-\|hypothetical-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.24873e-65
NZ_CP022427.1\|WP_072136343.1\|3528150_3530289_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP022427.1\|WP_089517659.1\|3514137_3517341_-\|multidrug-transporter-subunit-MdtC	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP022427.1\|WP_014595174.1\|3518966_3520706_-\|cell-division-protein-FtsI	gnl\|CDD\|185060	PRK15105, PRK15105, peptidoglycan synthase FtsI; Provisional.	0

>NZ_CP022427.1|WP_089517661.1|3524991_3525177_-|hypothetical-protein
MGLNIVVTYCRKLPGMTHLAAFPQHECHRLIPQKMRDGKDIRNNGLGMIWRMGFQGAVMPR
>NZ_CP022427.1|WP_071822330.1|3524734_3524920_-|hypothetical-protein
MGLNILVTYCSKLPGMTHLAAFPQHECHRLIPLKVRNGKDILNNGLGMIWRMGFQGEVMPR
>NZ_CP022427.1|WP_013024371.1|3523443_3524454_+|HTH-type-transcriptional-regulator-GalR
MATIKDVARLAGVSVATVSRVINNSPKASDSSRQAVSQAMESLQYHPNANARALAQQSTETLGLVVGDVSDPFFGAMVKAVDEVAGQTGNFLLIGNGYHNEQKERQAIEQLMRHRCAALVVHAKKIPDSELEVLMKQMPGMVLLNRLLKGFEKRCIALDDRYGAWLATRHLIQLGHQNIAFICSTHTISDAEDRLQGYYDALQEHGLPCNDRLVAWGEPDEVGGEQAMTELLGRGKNFSAVACYNDSMAAGALAVLSDNGVQVPEEMSLIGFDDVLVSRYVRPRLTTVRYPIVTMAQQAAELALALAHQQPLPEVTNMFSPTLVRRHSVGGPATSS
>NZ_CP022427.1|WP_089517826.1|3520982_3523256_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-C
MKTKVPHLAHWGAFTAVSENDRLIGCEPFFADADPSPMLNTIPELVYSDKRIRQPMVRRSWLKSRENSDRTLRGREDFVAVDWETALDLVAEENRRIRERYGASGIFNGSYGWSSAGRVNHARTLVRRFYFQGGGGVDQQGNYSWGAAQFFLPYVMGTYMPLTGRVTDWPQVVEHAEVFVAFGGLALKNAQVASGGAGQHSLKPALEQLAAKGTPVINISPMRDDCPEFVNAEWIPIRPNTDVALMLALGYEICQRGATDEAFLARHCTGWPQLRAYLLGESDGIAKTPGWASKITDIPADRIVHLARQLIGKRSFITCSYSVQRAHRGEQPYWMMIALSSMLGQPGLPGAGFSFGHGSMNSVGNPRQEGPAPMMSTGPNPSGLSIPVARISDMLLNPGQPYGFQGEILHYPDIHMVHWAGGNPFHHHQQLNRLVEGWQKPDTVVVQDIVWTPAAQMADIVLPATTTLERNDIGGSSRDRFVLAMHQAIKPQHQARNDFDIFADLAERLGYRDTFTEGRNEMQWIEHLYQQCAVAHGRRGIPFPEFGEFWQRGFVEIPEGGKPYIFMEDFRADPEANPIQTASGKIELFCQTIADYHLEDMAGHPEWREPQEWLGAAASRDYPLHMISIQPSDRLHSQLDATATVQGNKTAGHETLYMHPQDAAVRDIGDGDEIEVSNARGRILAGVRLTEGLKQGVVIISTGAWFDPGFGKAWQPFDRAGNPNVLTLDIGTSSLTQGPNAMSCLVDIKKHAVCTKA
>NZ_CP022427.1|WP_014595174.1|3518966_3520706_-|cell-division-protein-FtsI
MPRIKKLLGKDQIKAPFNPFRFRLICLGVFTCMAVLLVRVADLQFLNQPMLEHEADQRSLRTVTLPTSRGTLLDRNGEALALSVPSRDVIADPQRVLESNPDFTSAKWAYLAAALSMRPEEVAAQITANPKRRFLYLGRKVELGIAKDIKDLKLKGISEVYDDSRFYPMSEASAPLIGIVGADNTGLNGLEKGFDKVLQGQPGKEVYRQDAAGNIIAMISYQPPTQPPTVQLSIDKFSQYTLYSKLRDGVLLNKADSGAAVLVKIDTGEILAMASYPSFNPNNYQGATPAQMRNTAINDSYEPGSTVKPLVVMEGLERHLVRPDSVLDTTPYRVNGHLIRDVGHWPRLTMTGILQKSSDIGVSHIALAMPAEALVNTYYAFGLGKPTGLGLTGESVGYFPLHRTRWADIERATFSFGYGLRVTPLQIAREYATLGSYGVYRPLSITKVTPPVLGKQVANPETVKEVVHMLESDVLPGGTGLKAAVPGYRLATKTGTAEKMGSSGKYDGGYVNYTAGIAPASHPEVALVVMINHPTAGDHFGGSVAAPVFGNIMGPVLKHMNIAPDAIYSKPVDSGSDKS
>NZ_CP022427.1|WP_089517660.1|3517337_3518612_-|multidrug-transporter-subunit-MdtA
MPPIRRISFIPVYLKSSMTTHAPRTRGSRWLKWLLLLIALLIVAAVAWRLMGHKGAGGTLPARGHAGRHGGPGMLKGGTTLVHSGTASTADVPVYLYALGTVIPNASVTVTSRVDGQLEKVYFTEGQKVEAGQLLAQIDPRSYEATLNQYQGELSENMALLKSAELTLARYRKLAAQDSLSRQDLDTQIATVGQYRGAVAADQAQIASARLNIGYARITAPVSGRVGLRQVDPGNMIQSASTTGLVTITQMQPAAVTFSVPQSHIPTLVKALHHDRTLPATAFDQDNQHALSQGQVKFISNEIDTATGTITLKAMFANDDEALYANQFVNLRLQTSVLKGATIIPAQALQLSSDGSFVFIINKDNTVTRQPVTAGPAYGETWQAILQGVKPGDRLVTEGIDRLTNGSKVSVADSPQPTPPAEAQ
>NZ_CP022427.1|WP_089517659.1|3514137_3517341_-|multidrug-transporter-subunit-MdtC
MNPSRLFILRPVATILLMAGVLIAGLFAYRFLSTSALPQVDYPTIQVTTLYPGASPDVMASTITSPLERQLGQMSGLSQMSSTSSGGSSIITLTFSLDLSLDVAEQEVQAAINAANNLLPTDLPTPPTYKKVNPADSAVITLAASSDTLPLTQVQDLVNTRVALKLSQISGVGMVTLAGGHQPAIRVQMNPQALAAHGLTLEDVNTLIGNSNVKGSKGGFDGRYHSVTIDANDQLRTAAEYGNLILTYQNGAALRLKDIAHIEQGPENSFQSAWANNHPAIVIGVQRQPGANVIQVVDSIKAQLPTLQAALPDGVKMTILSDRTQTIRASIRDVQFELMLSIALVVMVTFLFLRNVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLSLMALTIATGFVIDDAIVVVENISRRLEAGEPPLEAALKGSQQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREFAITLAVSILVSMLVSLTLTPMLCAYLLHFVPPEKQSRFARKGGEVFDWLIRGYDRLLTRVLDHQKLTLLAALGTFALTALLYILVPKGFFPTQDTGLIQGVTVATQDVSFTEMAKRQQALSEVIMQNPAVESVSSTIGIDGNNTSLNSGRLQINLKPFGQRDDKAGAIIKQLQQAATRVVGIQLYLQPAQDLTVNDQVTPSQYQFTLDDANSEDLVTWSPKLVAALQKRPEFNGVVSNLQDQGQVAYVELNRDKAARLGVTAADVDTALYSAFGQRLVSTIFTQSNQYRVVLEVAPQYQQSPAAFDDVYLKPSASTSSTASDSTSASSSPDTSSASTATSTATTTSSGMVRLTAIATIHQRTGSLMHMRLNQFPAVMISFNLNDGYSLEDAQNAITKVTAQLQLPSAITLRYQGETSAFQSATGNTLWLILAALLTMYVVLGILYESFIHPVTILSTLPSAAVGALLTLLLANTAFSLIALIGVILLIGIVKKNAIMMIDFALEAENKQHLSPREAIHQACLLRFRPILMTTMAALLGALPLMLASGSGAELRQPLGLVIVGGLIVSQVLTLFSTPVIYLWFDGIAQRGNAWVKRRQQQARSGQ
>NZ_CP022427.1|WP_014595176.1|3511039_3514141_-|multidrug-transporter
MNLTRLFIFRPVATLLLTMAILLLGVLGYRLLPVAPLPQVDFPTIMVNASLAGASPETMAATVATPLERSLGQIAGITEMTSNSSQGSSTIILQFELNRDINGAARDVQAAINAARSLLPSAMASLPTYHKANPSDAPIVMLALTSATRSPGELYDLAESKIEQAMGQIKGVGDVSLMGSALPAVRIDLQPLKLIHAGISLDTVRSAVANSTTTLPKGSLQGSSQSWMVDGNGQLDKAASYRNLIISNKDGNVVRLGDVASVYDSVEDRYQAGFLNAQPAVMVGIKRQAGANMLDTIDAIKARLPALEKDLPADTQLKVVVDRSPGVRASLYDTEETLLIAVLLVIAVVFVFLRNLQAVIIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIIATGFVVDDAIVVLENITRHIEAGQRPLRAAIRGAREVSFTVLSMTVSLIAVFIPILLMGSLLGRLFREFAITLTVSLVISMFVSLSLTPMLCARLLKPKPNVSKRPHPLYQWIENQLNHALAAYSRGLNWVMRHQKLTLFSLLLTVLLNLFLYTVVQKGFFPEQDTGLLMGALRADQNISFQAMKPKMLQFTNIIRSDPAVESVMSSMGSGMFGSRNNADFFVRLKAFDKRDATASQVANRLSQKTSKIPGAQLFLMAAQDLHIGGRSANATYQYSLQADDLALLREWTPKVQAALAAIPQLNSVDSDAQTGGQEVMLTIDRDQATRLGVNVKMLDTMLNNAFSQRQIATLYHTLNQYHVVMSLQDSDTRDPAILQQLYVINDSGDRIPLSAFVSFTGGNAPLTVTHQGQSATSTVAFNLNDGVSLEQAEALIKQAMAQIGLPSTIQAGYAGTAAEFNQLTATMPWLIVAALVAVYIVLGVLYESYIHPLTILSTLPSAGVGALLLLLLTNTQLTVIALIGIILLIGIVKKNAIMMIDFAIDAERRLGLSPQQAITQACLMRFRPIMMTTLAAFFGALPLALGSGGDADLRSPLGIAIAGGLALSQLLTLFTTPVIYLWLDRLSRATQRQWRRLRHAGT
>NZ_CP022427.1|WP_029569509.1|3509650_3511036_-|RND-transporter
MKSRLPAVLVLLLSGCTVGPDYQRPLMAMPVHYKEARGWQQATPQDDRHKGEWWSVYQDATLNSLLSQVSLSNQNVAEYAAQYRQAQALVAQSRAALFPTLDYDASTTRSGSHTDSTRTTSSSHQAALNASWELDLWGKLRRTREEDQASAQASAAELANITLSAQTELAEDYFQLRIMDEKIGLYQQSIAAYQRYLSVIQNQYQAGTESRATVAQAQQQLESASASAQDYQWQRAQMEHAIALLVGKAPADFSLPAATLTATLPAIPGGLPAELLQRRPDIAMAERKMAAANAAIGVATAGYYPDLTLSASGGVSASALHNLFALPNRVWSLGPELSGSLLDFGATSASVDQARAAYDASVANYRQTVLTAMQDVEDRLVELNTLQGEIAAQQRATAAAQTSAQVTRNQYEAGMIDYLDVATTENSSLSAQQSLLTLKSTQWVSSVALIAALGGGWHTVP
>NZ_CP022427.1|WP_028715975.1|3507403_3509554_-|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase
MLFTFFRLVFRLLWRVELRGDLAELHKQKVLITPNHTSFLDGALLALFLPIKPVFAIYSSISEHWFLRLIKPYVDFVPLDPTKPLGLKQLVRLIDSGRPVVIFPEGRITVTGSLMKIYSGAGFVAAKSGATVVPMRIEGAEFTPFGRLAGVFKRRLFPRITLSILPGTHIPMPEAKRARDRRVLAGEHLHHIMMEARMAVRPRETLFEAFLNARQRYGAFKRCIEDVNFKPDSYTGLLKKALGVGRILERYSQPNEYVGLLLPNATVTAAAILGASLRGRVPAMLNYTAGVSGMRAALTASKVKTVFTSRQFLDKGNLWHLPQGLTEVQWIYLEDLKDTVTLKDKLWILAHLIAPRQAQVAQQPEEAAMVLFTSGSEGHPKGVVHSHKSLLANVEQIRTVADFTPRDRFMSALPLFHAFGLTVGLFTPLMTGAQVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAQPYDFARLRYVVAGAEKLQETTRQLYMDKYGIRILEGYGVTECAPVVAINVPMAAKAHTVGRILPGMDSRLMSVPGIENGGQLQLRGPNIMKGYLRVENPGVLETPAADNGEGQSEAGWYDTGDIVSFDEGGFCQIQGRAKRFAKIAGEMVSLEVVEQIALKASSDKQHAASLRPDGNRGEALVLFTTDSELARESLQKAARELGAAELAVPRDIRVVKTLPLLGSGKPDYVTLKNMAEEEQA
>NZ_CP022427.1|WP_072136343.1|3528150_3530289_+|anaerobic-ribonucleoside-triphosphate-reductase
MATVVVKRDGCRVGFDSQRIAAAVKAAARAANVEDARWCDTVADRVSTQLAHRQEVDIGDIQYAVEETLMAGPYPQLARTYIEYRHDRDVERERRSHLHHAIRGLVDQTNAALLHENANKDSKVIPTQRDLLAGIVAKHYAQQQILPRDVVQAHERGEIHYHDLDYSPFFPMFNCMLIDLKGMLTNGFKMGNAEIEPPKSIATATAVTAQIIAQVASHIYGGTTLNRIDEVLAPYVEKSFAKHLAVAQDWHIPQADAYARERTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWAARLVQTSILRNRLAGLGKNHKTAVFPKLVFTIREGVNRRAGEVNYDIKQLALTCASKRMYPDILNYDQVVQVTGSFKTPMGCRSFLGVYEENGEQIHEGRNNIGVISLNLPRIALEADGDETRFWTLLDARLALAKRALMTRVARLEKTKARVAPILYMEGACGVRLNADDEIGPIFRNGRASLSLGYIGLHETLNALSGAQHHPFDDAALRAKGVAIVAHMRAATDAWKDETGYGFSLYSTPSENLCDRFCRLDAAQFGVVKGVTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPSLANGGFICYGEYPNVQHNLKALEDVWDYSYDRVPYYGTNTPIDECYDCGFNGEFTCTSRGFTCPNCGNHDPARVSVTRRVCGYLGSPDARPFNAGKQQEVQRRVKHLDSGQLG
>NZ_CP022427.1|WP_014606739.1|3530285_3530753_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MMRIHRYYDVDIVNGPGTRCTLFVSGCEHQCRGCYNQSTWRLDSGVPFTLEMEEQLLADLQDTRIPRQGLSLSGGDPLHPHNVPHVRRLVKRVKQTCAGKDIWLWTGYDMQALSPAQRAILPWIDVVIDGRFEEAERDATLLWRGSRNQKIWYLR
>NZ_CP022427.1|WP_089517664.1|3530744_3531380_-|hypothetical-protein
MNRVLLTGATGLVGSCLLRLLIDDPRVDEIIAPSRRALPAMNKVVNPVEADLTDVLRPLEAPLTTVFCCLGTTRKQAGSKEAFIHVDYTLVVDTALNALRLGARKMLVVSAHGANRHSPFLYNRVKGEMENTLRHQAWPSLTVVRPSLLLGERKDKRRGESLMAPLFAWLPGNWRAVSAQDVARCLHHQAFAEENTGFTLIESGEIPRVSA
>NZ_CP022427.1|WP_013024366.1|3531526_3532048_+|type-1-glutamine-amidotransferase
MSTRIAVLITDEFEDSEFTSPAEVYKRAGYEVVTIEEQAGKTVKGKQGDAEVTIDRSIDDVSPAEFDALLLPGGHSPDALRGDDRFVAFTKDFVASGKPIFAICHGPQLLISANGVRGRKMTSVKAIAIDLINAGADFRDEEVVVDGDKLVTSRTPADLPAFNRESLRILQAL
>NZ_CP022427.1|WP_014606741.1|3532087_3532516_-|hypothetical-protein
MSDLAHLVRYLKKQHVLSLCCCADDDLWCANCYYVFDELRMAFWLMTESDTRHGLLAMKNNRVAGTINGQPKTVLLIKGVQYRGHIRPLSEEDASEARTAYQRRFPVSRKVSAPLWEITLDELKMTDNALGFGKKIVWQREA
>NZ_CP022427.1|WP_013024364.1|3532598_3532886_+|hypothetical-protein
MSQHWQLYLIQTAAGMLYTGITTDVARRLGQHACGRGARALRGKGPLALVYACAAGDRSQASALEYQVKQLTRQRKLQLVAEQPVSLTAWLSAVD
>NZ_CP022427.1|WP_013024363.1|3532869_3533376_-|N-acetyltransferase
MLIRTEIGVDAAGIDALLRRCFPTSAEAELTQALREDGLLTLGVVATDDEGQVLGYAAFSPVTLQGEDRNWVGLAPLAVDESLRGQGIAKQLVYEGLDTLNEFGYSAVVVRGDPALYSHLGFEPAARHGLHCRWPDSEASFLVYPLADNAFDGAEGRIEYSAPFNPLR
>NZ_CP022427.1|WP_014595167.1|3533369_3533945_-|lipid-carrier-protein-YhbT
MALYGNIAKIFVTGVQNVFQRLSASLVKNGPKILSLPATLAPFILKKQLLQQLLNWQFRHVLAEGELDFLQGRFLGIEISDINLTWITTLEGGQLRVLQHAEADVWFRGNANDLLLVAARKADPDMLFFQRRLLIEGDTELGLEVKNVMDAIELNTMPKGLRTAIQQMAAIVETTMQQDAKAAQARAGVSC
>NZ_CP022427.1|WP_072138512.1|3534099_3535095_+|U32-family-peptidase
MELLCPAGNLPAIRSAVENGADAVYVGLKDDTNARHFAGLNFTDKKLHEAAYYLHQHRRKLHVAINTFAHPDGMQRWQRAIDVAADSGADALILADIATLEYATARYPHIERHLSVQASATNLEAIRFYHRHFNLHRVVLPRVLSIHQVKQLARSTPVPLEVFAFGSLCIMAEGRCYLSSWLTGESPNSKGACSPAKFVRWQQTPAGMEVRLNDVLIDRYRAEESAGYPTLCKGRYQVDDQRYHVLEEPTSLNTLELLPELMRAGIASVKIEGRQRSPAYVSDVARVWRQAIDRCQAQPDNFEVAQQWMKTLGALSEGTQTTLGAYHRDWQ
>NZ_CP022427.1|WP_089517665.1|3535104_3535989_+|U32-family-peptidase
MKYSLGPVLWYWPTATLEHFYHLTADSSADIICLGEAVCSKRRATPFAAWMDLARMLSARGKQVVISTLALLQSPSELKELQRYVENGEFIIEANDLGTVNMAAERKLPFVAGPTLNVYNADTLQLLVKEGMTRWCLPVEMPRDWLVELLQQCETRGIRQQFEVEVLGYGHLPLALSARCFTARSENRAKDACETCCIHYPHGRRVLSQESQQVFVLNGIQTLSGYCYNLGNDLVGMHNYVDIVRLSPQDEETLSLIDRFRANEEGQAPLDLAKNRDCNGYWRKLPGMVLQAGD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP022427_4	4.1\|3367586\|25\|NZ_CP022427\|CRISPRCasFinder	3367586-3367610	25	NZ_CP022427.1	3367154-3367178	0	1.0
NZ_CP022427_4	4.2\|3367634\|25\|NZ_CP022427\|CRISPRCasFinder	3367634-3367658	25	NZ_CP022427.1	3367202-3367226	1	0.96
NZ_CP022427_4	4.12\|3368114\|25\|NZ_CP022427\|CRISPRCasFinder	3368114-3368138	25	NZ_CP022427.1	3366242-3366266	2	0.92
NZ_CP022427_4	4.18\|3368402\|25\|NZ_CP022427\|CRISPRCasFinder	3368402-3368426	25	NZ_CP022427.1	3366242-3366266	2	0.92
NZ_CP022427_4	4.24\|3368690\|25\|NZ_CP022427\|CRISPRCasFinder	3368690-3368714	25	NZ_CP022427.1	3366242-3366266	2	0.92

1. spacer 4.1|3367586|25|NZ_CP022427|CRISPRCasFinder matches to position: 3367154-3367178, mismatch: 0, identity: 1.0

cgtcagcacactctgttcgcgcgcc	CRISPR spacer
cgtcagcacactctgttcgcgcgcc	Protospacer
*************************

2. spacer 4.2|3367634|25|NZ_CP022427|CRISPRCasFinder matches to position: 3367202-3367226, mismatch: 1, identity: 0.96

cgtcaggctactgtgataactggcg	CRISPR spacer
cgtcaggctactgtgatagctggcg	Protospacer
******************.******

3. spacer 4.12|3368114|25|NZ_CP022427|CRISPRCasFinder matches to position: 3366242-3366266, mismatch: 2, identity: 0.92

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gatcagggagctgtcggcgcccgcc	Protospacer
**************** *.******

4. spacer 4.18|3368402|25|NZ_CP022427|CRISPRCasFinder matches to position: 3366242-3366266, mismatch: 2, identity: 0.92

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gatcagggagctgtcggcgcccgcc	Protospacer
**************** *.******

5. spacer 4.24|3368690|25|NZ_CP022427|CRISPRCasFinder matches to position: 3366242-3366266, mismatch: 2, identity: 0.92

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gatcagggagctgtcggcgcccgcc	Protospacer
**************** *.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022427_4	4.5\|3367778\|25\|NZ_CP022427\|CRISPRCasFinder	3367778-3367802	25	NC_015465	Synechococcus phage S-CBS3, complete genome	16068-16092	3	0.88
NZ_CP022427_4	4.12\|3368114\|25\|NZ_CP022427\|CRISPRCasFinder	3368114-3368138	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NZ_CP022427_4	4.12\|3368114\|25\|NZ_CP022427\|CRISPRCasFinder	3368114-3368138	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NZ_CP022427_4	4.12\|3368114\|25\|NZ_CP022427\|CRISPRCasFinder	3368114-3368138	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NZ_CP022427_4	4.12\|3368114\|25\|NZ_CP022427\|CRISPRCasFinder	3368114-3368138	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NZ_CP022427_4	4.16\|3368306\|25\|NZ_CP022427\|CRISPRCasFinder	3368306-3368330	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	3	0.88
NZ_CP022427_4	4.18\|3368402\|25\|NZ_CP022427\|CRISPRCasFinder	3368402-3368426	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NZ_CP022427_4	4.18\|3368402\|25\|NZ_CP022427\|CRISPRCasFinder	3368402-3368426	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NZ_CP022427_4	4.18\|3368402\|25\|NZ_CP022427\|CRISPRCasFinder	3368402-3368426	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NZ_CP022427_4	4.18\|3368402\|25\|NZ_CP022427\|CRISPRCasFinder	3368402-3368426	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NZ_CP022427_4	4.24\|3368690\|25\|NZ_CP022427\|CRISPRCasFinder	3368690-3368714	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NZ_CP022427_4	4.24\|3368690\|25\|NZ_CP022427\|CRISPRCasFinder	3368690-3368714	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NZ_CP022427_4	4.24\|3368690\|25\|NZ_CP022427\|CRISPRCasFinder	3368690-3368714	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NZ_CP022427_4	4.24\|3368690\|25\|NZ_CP022427\|CRISPRCasFinder	3368690-3368714	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NZ_CP022427_4	4.4\|3367730\|25\|NZ_CP022427\|CRISPRCasFinder	3367730-3367754	25	NZ_CP028972	Aminobacter sp. MSH1 plasmid pUSP4, complete sequence	38380-38404	4	0.84
NZ_CP022427_4	4.6\|3367826\|25\|NZ_CP022427\|CRISPRCasFinder	3367826-3367850	25	NC_047783	Klebsiella phage vB_KpnP_KpV48, complete genome	3937-3961	4	0.84
NZ_CP022427_4	4.10\|3368018\|25\|NZ_CP022427\|CRISPRCasFinder	3368018-3368042	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NZ_CP022427_4	4.11\|3368066\|25\|NZ_CP022427\|CRISPRCasFinder	3368066-3368090	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NZ_CP022427_4	4.13\|3368162\|25\|NZ_CP022427\|CRISPRCasFinder	3368162-3368186	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NZ_CP022427_4	4.17\|3368354\|25\|NZ_CP022427\|CRISPRCasFinder	3368354-3368378	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NZ_CP022427_4	4.19\|3368450\|25\|NZ_CP022427\|CRISPRCasFinder	3368450-3368474	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NZ_CP022427_4	4.22\|3368594\|25\|NZ_CP022427\|CRISPRCasFinder	3368594-3368618	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NZ_CP022427_4	4.22\|3368594\|25\|NZ_CP022427\|CRISPRCasFinder	3368594-3368618	25	MK290737	Pectobacterium phage Arno162, complete genome	39073-39097	4	0.84
NZ_CP022427_4	4.22\|3368594\|25\|NZ_CP022427\|CRISPRCasFinder	3368594-3368618	25	MN270892	Pectobacterium phage Wc4-1, complete genome	70859-70883	4	0.84
NZ_CP022427_4	4.22\|3368594\|25\|NZ_CP022427\|CRISPRCasFinder	3368594-3368618	25	MN270891	Pectobacterium phage Wc4, complete genome	70859-70883	4	0.84
NZ_CP022427_4	4.23\|3368642\|25\|NZ_CP022427\|CRISPRCasFinder	3368642-3368666	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NZ_CP022427_4	4.7\|3367874\|25\|NZ_CP022427\|CRISPRCasFinder	3367874-3367898	25	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	540938-540962	5	0.8
NZ_CP022427_4	4.7\|3367874\|25\|NZ_CP022427\|CRISPRCasFinder	3367874-3367898	25	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	380738-380762	5	0.8
NZ_CP022427_4	4.25\|3368738\|25\|NZ_CP022427\|CRISPRCasFinder	3368738-3368762	25	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	163595-163619	5	0.8

1. spacer 4.5|3367778|25|NZ_CP022427|CRISPRCasFinder matches to NC_015465 (Synechococcus phage S-CBS3, complete genome) position: , mismatch: 3, identity: 0.88

cgttagcacactgttgtagctggct	CRISPR spacer
cgttagcacgctgttgtagttggca	Protospacer
*********.*********.****

2. spacer 4.12|3368114|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gctcagggagccgtcgtcaccggcc	Protospacer
* *********.********* ***

3. spacer 4.12|3368114|25|NZ_CP022427|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

4. spacer 4.12|3368114|25|NZ_CP022427|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

5. spacer 4.12|3368114|25|NZ_CP022427|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

6. spacer 4.16|3368306|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

cgtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
*  **************** *****

7. spacer 4.18|3368402|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gctcagggagccgtcgtcaccggcc	Protospacer
* *********.********* ***

8. spacer 4.18|3368402|25|NZ_CP022427|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

9. spacer 4.18|3368402|25|NZ_CP022427|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

10. spacer 4.18|3368402|25|NZ_CP022427|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

11. spacer 4.24|3368690|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gctcagggagccgtcgtcaccggcc	Protospacer
* *********.********* ***

12. spacer 4.24|3368690|25|NZ_CP022427|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

13. spacer 4.24|3368690|25|NZ_CP022427|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

14. spacer 4.24|3368690|25|NZ_CP022427|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

15. spacer 4.4|3367730|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP028972 (Aminobacter sp. MSH1 plasmid pUSP4, complete sequence) position: , mismatch: 4, identity: 0.84

agtgaggtcactgccttctctcgcc	CRISPR spacer
ggtcgtgtcactgccttctctcgcc	Protospacer
.** . *******************

16. spacer 4.6|3367826|25|NZ_CP022427|CRISPRCasFinder matches to NC_047783 (Klebsiella phage vB_KpnP_KpV48, complete genome) position: , mismatch: 4, identity: 0.84

gatcagtgaactatttgccccggct	CRISPR spacer
tttctttgaactatttgccccggct	Protospacer
  **  *******************

17. spacer 4.10|3368018|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

agtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
   **************** *****

18. spacer 4.11|3368066|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagcgagctgtcttcgcccgcc	CRISPR spacer
cctcggcgagctgtcttcacccgcc	Protospacer
. **.*************.******

19. spacer 4.13|3368162|25|NZ_CP022427|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgtaaggtcgctgcccttctgcgcg	CRISPR spacer
attatggtcgccgcccttctgcgcg	Protospacer
  ** ******.*************

20. spacer 4.17|3368354|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagcgagctgtcttcgcccgcc	CRISPR spacer
cctcggcgagctgtcttcacccgcc	Protospacer
. **.*************.******

21. spacer 4.19|3368450|25|NZ_CP022427|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgtaaggtcgctgcccttctgcgcg	CRISPR spacer
attatggtcgccgcccttctgcgcg	Protospacer
  ** ******.*************

22. spacer 4.22|3368594|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
   **************** *****

23. spacer 4.22|3368594|25|NZ_CP022427|CRISPRCasFinder matches to MK290737 (Pectobacterium phage Arno162, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
*******.*************   *

24. spacer 4.22|3368594|25|NZ_CP022427|CRISPRCasFinder matches to MN270892 (Pectobacterium phage Wc4-1, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
*******.*************   *

25. spacer 4.22|3368594|25|NZ_CP022427|CRISPRCasFinder matches to MN270891 (Pectobacterium phage Wc4, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
*******.*************   *

26. spacer 4.23|3368642|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagcgagctgtcttcgcccgcc	CRISPR spacer
cctcggcgagctgtcttcacccgcc	Protospacer
. **.*************.******

27. spacer 4.7|3367874|25|NZ_CP022427|CRISPRCasFinder matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 5, identity: 0.8

gatgagatcgctttcgttctgcgcg	CRISPR spacer
acatagatcgctttcggtctgcgcg	Protospacer
.   ************ ********

28. spacer 4.7|3367874|25|NZ_CP022427|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.8

gatgagatcgctttcgttctgcgcg	CRISPR spacer
cgcgacatcgctttcgttctgcgct	Protospacer
 ..** ******************

29. spacer 4.25|3368738|25|NZ_CP022427|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 5, identity: 0.8

ggtgagatcgctgcctttcatgccg	CRISPR spacer
gttgagatcgctgcctttcataatt	Protospacer
* *******************. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17767 : 47840

Erwinia_phage(70.0%)

tRNA,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015699474.1\|17767_18352_-	phage repressor protein	A0A218M4J1	Erwinia_phage	2.5e-33	42.2
WP_014604958.1\|18775_19144_+	hypothetical protein	F1BUS4	Erwinia_phage	9.4e-39	58.3
WP_015699476.1\|19183_19429_+	DUF2732 domain-containing protein	F1BUS3	Erwinia_phage	8.8e-09	54.1
WP_013027288.1\|19428_19656_+	hypothetical protein	F1BUS2	Erwinia_phage	1.7e-14	51.4
WP_089517002.1\|19652_21716_+	replication endonuclease	F1BUS0	Erwinia_phage	2.6e-263	70.7
WP_013027286.1\|21923_22148_+	hypothetical protein	F1BUR9	Erwinia_phage	2.6e-15	64.6
WP_014604961.1\|22840_23044_+\|tail	tail protein X	F1BUQ5	Erwinia_phage	2.9e-26	80.6
WP_014604962.1\|23049_23274_+	hypothetical protein	F1BUQ4	Erwinia_phage	9.8e-31	82.4
WP_014604963.1\|23257_23767_+	lysozyme	E5G6N1	Salmonella_phage	4.8e-57	66.3
WP_089517003.1\|23763_24198_+	LysB family transcriptional regulator	F1BUQ1	Erwinia_phage	5.5e-38	58.3
WP_089517004.1\|24284_24755_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	3.7e-48	62.5
WP_013027279.1\|24847_25432_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	9.9e-83	79.4
WP_015699482.1\|25428_25779_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.8e-48	81.9
WP_014604965.1\|25782_26691_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	9.5e-133	82.1
WP_014594654.1\|26683_27292_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.1e-95	83.2
WP_089517005.1\|27288_28368_+\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	1.0e-101	57.7
WP_014594652.1\|28367_28964_+\|tail	tail assembly protein	A0A218M4J2	Erwinia_phage	3.9e-50	47.7
WP_081098036.1\|29613_30216_-\|tail	phage tail protein	Q9MCR6	Enterobacteria_phage	6.7e-34	50.3
WP_022623189.1\|30208_30787_+	recombinase family protein	A0A1S6L009	Salmonella_phage	6.0e-72	77.8
WP_089517006.1\|30867_32037_+\|tail	phage tail protein	F1BUU3	Erwinia_phage	1.2e-201	89.5
WP_013027271.1\|32049_32562_+\|tail	phage major tail tube protein	F1BUU2	Erwinia_phage	3.3e-82	85.3
WP_013027270.1\|32616_32913_+\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	6.0e-28	72.2
WP_013027268.1\|32945_33068_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	7.4e-09	61.5
WP_089517007.1\|33060_35307_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	7.0e-68	41.5
WP_024471095.1\|35313_35817_+\|tail	tail assembly protein	F1BUT6	Erwinia_phage	9.8e-55	68.8
WP_028715817.1\|35818_36976_+	cytochrome c1	A0A0M5M5V5	Salmonella_phage	8.3e-81	43.2
WP_014604972.1\|37049_37271_+	late control protein ogr/delta	F1BUT0	Erwinia_phage	8.2e-22	68.1
WP_089517008.1\|37648_38179_-	hypothetical protein	NA	NA	NA	NA
WP_089517009.1\|38317_38509_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_024471090.1\|39483_40104_-	hypothetical protein	NA	NA	NA	NA
WP_029569167.1\|41474_41990_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_013027259.1\|42062_43907_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_014594644.1\|44470_46216_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.1e-72	37.3
WP_001144069.1\|46332_46548_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_089517010.1\|46826_47840_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.1e-105	58.0

DBSCAN-SWA_2

174184 : 216579

uncultured_Caudovirales_phage(28.57%)

integrase,transposase

attL 176541:176556|attR 219581:219596

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000537152.1\|174184_174469_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_089517037.1\|174968_176621_+	HAMP domain-containing protein	NA	NA	NA	NA
176541:176556	attL	NA	NA	NA	NA
WP_014333112.1\|176855_177749_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_026021001.1\|177778_178465_-	hypothetical protein	NA	NA	NA	NA
WP_014333110.1\|178508_179111_+	cupin domain-containing protein	NA	NA	NA	NA
WP_089517038.1\|179273_179942_-	hypothetical protein	NA	NA	NA	NA
WP_089517039.1\|180301_180544_+	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	2.2e-28	77.5
WP_089517040.1\|180704_181832_-	lysogenic conversion protein	Q858S1	Enterobacteria_phage	1.8e-93	49.5
WP_089517041.1\|183158_184157_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014606788.1\|184308_185469_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
WP_042677661.1\|185465_186065_+	uracil-DNA glycosylase	NA	NA	NA	NA
WP_014606790.1\|186262_187171_+	inorganic pyrophosphatase	NA	NA	NA	NA
WP_014606791.1\|187167_187593_+	universal stress protein	NA	NA	NA	NA
WP_014606792.1\|187608_188898_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	2.6e-120	53.2
WP_028722238.1\|188941_189649_+	phosphoglyceromutase	NA	NA	NA	NA
WP_033744371.1\|189645_190026_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	8.2e-30	58.3
WP_014606795.1\|190192_190594_-	VOC family protein	NA	NA	NA	NA
WP_014606796.1\|190719_192837_-\|integrase	integrase	NA	NA	NA	NA
WP_014594566.1\|192838_193822_-\|integrase	integrase	NA	NA	NA	NA
WP_024472277.1\|194054_195035_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_089517791.1\|196039_197269_+\|integrase	integrase	NA	NA	NA	NA
WP_024472279.1\|197332_199126_-	DUF2813 domain-containing protein	NA	NA	NA	NA
WP_024472281.1\|200758_201286_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_024472282.1\|201337_202066_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_024472283.1\|202065_202452_-	thioredoxin	NA	NA	NA	NA
WP_033777987.1\|202584_203367_-	haloacid dehalogenase type II	NA	NA	NA	NA
WP_024472285.1\|203438_203990_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_024472286.1\|203986_204667_-	haloacid dehalogenase type II	NA	NA	NA	NA
WP_024472287.1\|204840_205470_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_024472288.1\|205587_206082_-	DoxX family protein	NA	NA	NA	NA
WP_024472289.1\|206078_206870_-	DUF2063 domain-containing protein	NA	NA	NA	NA
WP_024472290.1\|206850_207732_-	DUF692 domain-containing protein	NA	NA	NA	NA
WP_024472291.1\|207753_208050_-	DUF2282 domain-containing protein	NA	NA	NA	NA
WP_024472292.1\|208242_208884_-	hypothetical protein	NA	NA	NA	NA
WP_071887030.1\|208883_209090_-	hypothetical protein	NA	NA	NA	NA
WP_089517792.1\|209747_210941_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.5e-109	58.4
WP_014606797.1\|211115_211541_-	UV protection protein	A0A218MND2	uncultured_virus	2.6e-24	50.8
WP_014606798.1\|212224_213151_+	phosphoenolpyruvate mutase	NA	NA	NA	NA
WP_014606799.1\|213168_214314_+	phosphonopyruvate decarboxylase	NA	NA	NA	NA
WP_014606800.1\|214306_215317_+	gamma-butyrolactone biosynthesis protein	NA	NA	NA	NA
WP_089517042.1\|215459_216579_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.5e-50	42.0
219581:219596	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1427392 : 1462665

uncultured_Caudovirales_phage(37.5%)

holin,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089517257.1\|1427392_1428070_-	ATP-binding protein	G9L667	Escherichia_phage	4.1e-48	45.0
WP_089517258.1\|1428070_1428739_-	exodeoxyribonuclease X	A0A1W5PTR6	Pseudoalteromonas_phage	2.9e-22	34.7
WP_014605609.1\|1428707_1428917_-	hypothetical protein	NA	NA	NA	NA
WP_089517259.1\|1429038_1429443_-	hypothetical protein	NA	NA	NA	NA
WP_089517260.1\|1430347_1431031_-	XRE family transcriptional regulator	A0A2H4FNG6	Salmonella_phage	3.0e-14	44.4
WP_072404005.1\|1431069_1431306_+	transcriptional regulator	A0A2D1GLN0	Escherichia_phage	2.4e-19	68.1
WP_072404004.1\|1431318_1431621_+	hypothetical protein	I6PCV6	Cronobacter_phage	1.6e-12	46.7
WP_089517261.1\|1431613_1431799_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_089517262.1\|1431999_1433064_+	replication protein	A0A0N7KZ97	Stx2-converting_phage	1.5e-57	42.4
WP_089517263.1\|1433056_1434469_+	replicative DNA helicase	K7P852	Enterobacteria_phage	2.9e-128	55.8
WP_015700110.1\|1434465_1434825_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	3.6e-43	68.7
WP_089517806.1\|1434908_1435715_+	antitermination protein	M9NZB0	Enterobacteria_phage	1.3e-64	50.6
WP_089517264.1\|1435894_1436455_+	hypothetical protein	B5WZS6	Pseudomonas_phage	2.8e-42	46.0
WP_089517807.1\|1437450_1437894_+	methyltransferase domain-containing protein	H2BDB7	Pseudomonas_virus	2.5e-38	49.0
WP_089517265.1\|1438035_1438389_+\|holin	holin	NA	NA	NA	NA
WP_089517266.1\|1438388_1438877_+	lysozyme	A0A1W6JP42	Morganella_phage	4.9e-43	56.7
WP_089517808.1\|1439171_1439417_+	peptidase	Q8SBD8	Shigella_phage	4.4e-16	57.5
WP_089517267.1\|1439421_1439679_+	hypothetical protein	NA	NA	NA	NA
WP_089517268.1\|1439732_1439912_+	hypothetical protein	NA	NA	NA	NA
WP_089517269.1\|1440015_1440285_+	hypothetical protein	NA	NA	NA	NA
WP_089517270.1\|1440637_1441255_+	hypothetical protein	F1C5D5	Cronobacter_phage	7.0e-87	72.4
WP_028715505.1\|1441285_1441759_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	7.6e-49	74.4
WP_089517271.1\|1441977_1442244_-	hypothetical protein	NA	NA	NA	NA
WP_089517809.1\|1442245_1442422_-	DUF2158 domain-containing protein	M1F284	Cronobacter_phage	4.2e-05	48.3
WP_089517272.1\|1442496_1444107_+	TerL protein	A0A0M5M1R6	Salmonella_phage	1.9e-293	88.7
WP_089517273.1\|1444117_1445587_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	8.5e-224	78.1
WP_089517274.1\|1445546_1446296_+\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	3.1e-81	74.5
WP_089517275.1\|1446325_1447552_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.4e-147	67.9
WP_089517276.1\|1447561_1448059_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	2.0e-60	72.4
WP_089517277.1\|1448068_1449010_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	1.0e-153	84.3
WP_089517278.1\|1449053_1449389_+	hypothetical protein	NA	NA	NA	NA
WP_089517279.1\|1449390_1449798_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	2.5e-56	77.8
WP_089517280.1\|1449794_1450343_+	hypothetical protein	A0A0M4S631	Salmonella_phage	1.4e-59	69.6
WP_089517281.1\|1450329_1450716_+\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	1.4e-45	71.7
WP_089517282.1\|1450705_1451251_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.8e-70	66.3
WP_028715494.1\|1451254_1452400_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	3.1e-157	71.9
WP_028715493.1\|1452410_1452851_+	DUF3277 domain-containing protein	A0A2H4J619	uncultured_Caudovirales_phage	5.2e-60	76.0
WP_089517283.1\|1452854_1453307_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	9.5e-41	63.6
WP_028715491.1\|1453342_1453492_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.7e-16	77.6
WP_089517284.1\|1453488_1455471_+	lytic transglycosylase	A0A2H4J9N7	uncultured_Caudovirales_phage	2.8e-262	66.6
WP_089517285.1\|1455470_1456037_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	1.6e-61	67.6
WP_089517286.1\|1456045_1456351_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	7.1e-32	64.4
WP_089517287.1\|1456353_1457415_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	3.6e-147	73.2
WP_089517288.1\|1457414_1457753_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	5.6e-30	57.0
WP_089517289.1\|1457763_1458243_+	hypothetical protein	NA	NA	NA	NA
WP_089517290.1\|1458239_1458707_+	hypothetical protein	NA	NA	NA	NA
WP_089517810.1\|1458763_1459420_+	translation initiation factor IF-2	A0A2H4J8H6	uncultured_Caudovirales_phage	7.7e-76	59.5
WP_089517291.1\|1459416_1459770_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	9.3e-52	84.6
WP_089517292.1\|1459769_1460969_+	hypothetical protein	A0A2H4J5T1	uncultured_Caudovirales_phage	1.3e-161	74.4
WP_089517293.1\|1460965_1461646_+	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	5.1e-107	82.0
WP_089517294.1\|1461645_1462665_+	hypothetical protein	A9YX14	Burkholderia_phage	1.0e-42	32.7

DBSCAN-SWA_4

2042698 : 2056431

Pandoravirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013025587.1\|2042698_2043745_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B5IW14	Pandoravirus	3.0e-82	47.9
WP_089517381.1\|2043746_2045183_-	YdiU family protein	NA	NA	NA	NA
WP_014593597.1\|2045273_2046008_-	diguanylate phosphodiesterase	NA	NA	NA	NA
WP_089517382.1\|2046298_2046757_-	endopeptidase	A0A217EQL1	Bacillus_phage	4.2e-12	38.4
WP_013025583.1\|2046823_2047573_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	NA	NA	NA
WP_013025582.1\|2047573_2048119_-	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	1.8e-14	40.7
WP_013025581.1\|2048152_2049142_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-14	27.2
WP_006118960.1\|2049241_2049544_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	5.6e-13	40.0
WP_089517383.1\|2049548_2051936_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.6e-09	30.9
WP_013025578.1\|2051950_2052934_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.1
WP_006118956.1\|2053248_2053605_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_004157374.1\|2053649_2053847_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_026020952.1\|2053947_2054499_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.9e-15	31.8
WP_014593593.1\|2054502_2056431_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.1e-125	36.8

DBSCAN-SWA_5

2788816 : 2794348

Salmonella_phage(33.33%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022622579.1\|2788816_2789176_+	GtrA family protein	F1C5B1	Cronobacter_phage	1.6e-35	61.7
WP_014593116.1\|2789172_2790084_+	glycosyltransferase	A8CG95	Salmonella_phage	3.9e-150	84.5
WP_014593115.1\|2790085_2791540_+	hypothetical protein	A8CG94	Salmonella_phage	7.6e-15	24.7
WP_013024955.1\|2792336_2792783_-	hypothetical protein	NA	NA	NA	NA
WP_024471184.1\|2793235_2793472_-	DUF4282 domain-containing protein	A0A077KGV8	Edwardsiella_phage	4.2e-08	46.2
WP_013024953.1\|2793538_2793772_-\|terminase	terminase small subunit	A0A1W6JNT5	Morganella_phage	1.1e-19	66.2
WP_024471185.1\|2793792_2794230_+	hypothetical protein	NA	NA	NA	NA
WP_072138621.1\|2794204_2794348_-	DUF4102 domain-containing protein	E5AGD0	Erwinia_phage	2.4e-06	57.9

DBSCAN-SWA_6

3007089 : 3015949

Streptococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014593017.1\|3007089_3008838_-	amylovoran biosynthesis protein AmsF precursor	A0A1S6L3G8	Erwinia_phage	2.2e-157	46.7
WP_089517566.1\|3009037_3009328_-	hypothetical protein	NA	NA	NA	NA
WP_013024789.1\|3009324_3009672_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.6e-17	45.1
WP_013024788.1\|3009668_3010136_-	hypothetical protein	H9C148	Vibrio_phage	1.3e-29	45.3
WP_013024787.1\|3010332_3010611_-	hypothetical protein	NA	NA	NA	NA
WP_014606493.1\|3011033_3011753_-	XRE family transcriptional regulator	A0A2I6PIE7	Escherichia_phage	2.5e-43	35.4
WP_064373280.1\|3012112_3013366_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.1e-92	45.8
WP_024471994.1\|3013375_3014479_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-59	42.0
WP_015700888.1\|3014830_3015949_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.1e-109	56.5

DBSCAN-SWA_7

4640859 : 4660362

Erwinia_phage(77.78%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015699474.1\|4640859_4641444_-	phage repressor protein	A0A218M4J1	Erwinia_phage	2.5e-33	42.2
WP_014604958.1\|4641867_4642236_+	hypothetical protein	F1BUS4	Erwinia_phage	9.4e-39	58.3
WP_015699476.1\|4642275_4642521_+	DUF2732 domain-containing protein	F1BUS3	Erwinia_phage	8.8e-09	54.1
WP_013027288.1\|4642520_4642748_+	hypothetical protein	F1BUS2	Erwinia_phage	1.7e-14	51.4
WP_089517002.1\|4642744_4644808_+	replication endonuclease	F1BUS0	Erwinia_phage	2.6e-263	70.7
WP_089517786.1\|4645011_4645239_+	hypothetical protein	F1BUR9	Erwinia_phage	2.6e-15	64.6
WP_014604961.1\|4645931_4646135_+\|tail	tail protein X	F1BUQ5	Erwinia_phage	2.9e-26	80.6
WP_014604962.1\|4646140_4646365_+	hypothetical protein	F1BUQ4	Erwinia_phage	9.8e-31	82.4
WP_014604963.1\|4646348_4646858_+	lysozyme	E5G6N1	Salmonella_phage	4.8e-57	66.3
WP_089517003.1\|4646854_4647289_+	LysB family transcriptional regulator	F1BUQ1	Erwinia_phage	5.5e-38	58.3
WP_089517004.1\|4647375_4647846_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	3.7e-48	62.5
WP_013027279.1\|4647938_4648523_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	9.9e-83	79.4
WP_015699482.1\|4648519_4648870_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.8e-48	81.9
WP_014604965.1\|4648873_4649782_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	9.5e-133	82.1
WP_014594654.1\|4649774_4650383_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.1e-95	83.2
WP_089517787.1\|4650379_4651504_+\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	1.5e-103	56.3
WP_014594652.1\|4652153_4652750_-\|tail	tail assembly protein	A0A218M4J2	Erwinia_phage	3.9e-50	47.7
WP_089517788.1\|4652749_4653262_-	hypothetical protein	K7PH60	Enterobacterial_phage	5.5e-29	45.0
WP_022623189.1\|4653299_4653878_+	recombinase family protein	A0A1S6L009	Salmonella_phage	6.0e-72	77.8
WP_089517006.1\|4653958_4655128_+\|tail	phage tail protein	F1BUU3	Erwinia_phage	1.2e-201	89.5
WP_013027271.1\|4655140_4655653_+\|tail	phage major tail tube protein	F1BUU2	Erwinia_phage	3.3e-82	85.3
WP_013027270.1\|4655707_4656004_+\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	6.0e-28	72.2
WP_013027268.1\|4656036_4656159_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	7.4e-09	61.5
WP_089517007.1\|4656151_4658398_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	7.0e-68	41.5
WP_024471095.1\|4658404_4658908_+\|tail	tail assembly protein	F1BUT6	Erwinia_phage	9.8e-55	68.8
WP_028715817.1\|4658909_4660067_+	cytochrome c1	A0A0M5M5V5	Salmonella_phage	8.3e-81	43.2
WP_014604972.1\|4660140_4660362_+	late control protein ogr/delta	F1BUT0	Erwinia_phage	8.2e-22	68.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP022431

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022431_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022431_1

63215-63367

Orphan

Consensus_repeat	Method
GTAGTGCCGGATTAACACACATA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP022431_1

>merge|NZ_CP022431|1|63215-63367|CRISPRCasFinder
GTAGTGCCGGATTAACACACATAAATTTGCCGCGAAGTGCCGGATTAACACACACAAAAAGGCCATGTAGTGCCGGATTAACACACATTATTCAGGTCTTAAAGGTGTTTTGTACCCCTGTTTTTTGCAGGCAGTGCCGGATTAACACACAAA

>NZ_CP022431|1|1|63215-63367|CRISPRCasFinder
GTAGTGCCGGATTAACACACATA	AATTTGCCGCGAAGTGCCGGATTAACACACACAAAAAGGCCAT
GTAGTGCCGGATTAACACACATT	ATTCAGGTCTTAAAGGTGTTTTGTACCCCTGTTTTTTGCAG
GCAGTGCCGGATTAACACACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022431.1\|WP_089517954.1\|69434_69800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_089517943.1\|56821_57652_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533
NZ_CP022431.1\|WP_089517986.1\|66120_66780_+\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|377500
NZ_CP022431.1\|WP_089517942.1\|55676_56066_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_089517947.1\|61222_61555_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_063881355.1\|64530_65124_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_089517987.1\|69877_70552_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_089517949.1\|63614_64004_+\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|271351
NZ_CP022431.1\|WP_089517951.1\|66776_67508_+\|conjugal-transfer-protein-TraK	unknown	unknown	gnl\|CDD\|237486
NZ_CP022431.1\|WP_089517985.1\|56211_56532_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_039343347.1\|65764_66070_+\|type-IV-conjugative-transfer-system-protein-TraL	unknown	unknown	gnl\|CDD\|184263
NZ_CP022431.1\|WP_089517944.1\|58371_59316_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_052656071.1\|59821_60118_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_019106772.1\|56626_56773_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_089517946.1\|60174_60498_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022431.1\|WP_089517950.1\|65335_65761_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131805
NZ_CP022431.1\|WP_089517953.1\|68907_69438_+\|transcription/translation-regulatory-transformer-protein-RfaH	unknown	unknown	gnl\|CDD\|181611
NZ_CP022431.1\|WP_089517945.1\|59405_59555_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	unknown
NZ_CP022431.1\|WP_089517948.1\|61547_62105_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178801
NZ_CP022431.1\|WP_089517952.1\|67504_68896_+\|conjugal-transfer-protein-TraB	unknown	unknown	gnl\|CDD\|184281

Protein	Function_ID	Function_description	E-value
NZ_CP022431.1\|WP_089517943.1\|56821_57652_+\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	6.88338e-07
NZ_CP022431.1\|WP_039343347.1\|65764_66070_+\|type-IV-conjugative-transfer-system-protein-TraL	gnl\|CDD\|184263	PRK13707, PRK13707, type IV conjugative transfer system protein TraL.	8.34678e-50
NZ_CP022431.1\|WP_089517950.1\|65335_65761_+\|hypothetical-protein	gnl\|CDD\|131805	TIGR02758, putative_conjugative_transfer_protein_TraA, type IV conjugative transfer system pilin TraA. TraA is the single structural subunit of the pilus found in type IV conjugative transfer systems. This family is generally found in gammaproteobacteria. The pilins show considerable heterogeneity among the different conjugative plasmit types. All of them however contain an N-terminal part which is cleaved off by a leader peptidase (LepB, or similar) to result in a 68-78 amino acid product. Pilins may be further processed by acetylation (in F-like systems by the TraX protein) or by cyclization (in P-like systems by the TraF protein).	3.28385e-07
NZ_CP022431.1\|WP_089517952.1\|67504_68896_+\|conjugal-transfer-protein-TraB	gnl\|CDD\|184281	PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional.	0
NZ_CP022431.1\|WP_089517953.1\|68907_69438_+\|transcription/translation-regulatory-transformer-protein-RfaH	gnl\|CDD\|181611	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH.	2.4284e-50
NZ_CP022431.1\|WP_089517949.1\|63614_64004_+\|conjugal-transfer-protein	gnl\|CDD\|271351	cd14804, Tra_M, TraM mediates signalling between transferosome and relaxosome. TraM is a plasmid encoded DNA-binding protein that is essential for conjugative transfer of F-like plasmids (e.g. F, R1, R100 and pED208) between bacterial cells. Bacterial conjugation, a form of horizontal gene transfer between cells, is an important contributor to bacterial genetic diversity, enabling virulence and antibiotics resistance factors to rapidly spread in medically important human pathogens. Mutation studies have shown that TraM is required for normal levels of transfer gene expression as well as for efficient site-specific single-stranded DNA cleavage at the origin of transfer (oriT). TraM tetramers bridge oriT to a key component of the conjugative pore, the coupling protein TraD. The N-terminal ribbon-helix-helix (RHH) domain of TraM is able to cooperatively bind DNA in a staggered arrangement without interaction between tetramers. This allows the C-terminal TraM tetramerization domains to be free to make multiple interactions with TraD, thus driving plasmid recruitment to the conjugative pore.	3.32342e-30
NZ_CP022431.1\|WP_089517951.1\|66776_67508_+\|conjugal-transfer-protein-TraK	gnl\|CDD\|237486	PRK13736, PRK13736, conjugal transfer protein TraK; Provisional.	1.06609e-100
NZ_CP022431.1\|WP_089517948.1\|61547_62105_+\|hypothetical-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	2.92153e-57
NZ_CP022431.1\|WP_089517986.1\|66120_66780_+\|conjugal-transfer-protein	gnl\|CDD\|377500	pfam05309, TraE, TraE protein. This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression. The exact function of the TraE protein is unknown.	8.88577e-49

>NZ_CP022431.1|WP_089517948.1|61547_62105_+|hypothetical-protein
MNNSPVASPDLFPYAEVREVAFFSALQVRGADGEYRMATVEEILQEARRAIDVKFQKGITLTTSRDTRDFFQAKLGGLEREVFGAAFLNNQNELICWEEIFYGSIASVEVHPREVLKAALKHNAAAVILSHNHPSGSVLPSRQDKHITQLINQTLAVVNIDLLDHIIVAGNECTSMAETGMLHAG
>NZ_CP022431.1|WP_089517947.1|61222_61555_+|hypothetical-protein
MNTHNVKTAASESTETRVEGTKVNTGLTADQFQDVCKFVIDNGQFIGPCGLSWRDLIYFEEIIDPCEDNETRKIFTLNHWPVALYEFDLGYTVTVEAKKLLTDLAGGNHE
>NZ_CP022431.1|WP_089517946.1|60174_60498_+|hypothetical-protein
MLKNTPSGVVTRTVVASPESLKIADLDDLADYALHPVPWDKPDATCCAAAAVVTFARCTELDSKNDLAETAITDLLASLMHLCSAKDLPFCELLIRAGSHFQDEAAG
>NZ_CP022431.1|WP_052656071.1|59821_60118_+|hypothetical-protein
MVEQLARRTPSEEVRATVTVTGCETKRGRGVHFCGHPLLSGHNANMWFPVAKEESWFEAVERVLVMNGLAENLCSLEPLRKGSDYNDWRAIYNRKVRI
>NZ_CP022431.1|WP_089517945.1|59405_59555_+|succinate-dehydrogenase-flavoprotein-subunit
MNFDPQIVAQAALFVNSLRSGQQAHVPAMPFRLWPVFIGCVRLMMRASA
>NZ_CP022431.1|WP_089517944.1|58371_59316_+|hypothetical-protein
MNTHNVKTAASESTETRVLKNFDVQLPVRTNRLVILAQLEGNLMTYRALSALDASGPDGGDDMFSDVRYAAEIITTMLDEGDIATPFAYELATSVRSLAIETLPEAWRWAFGPDLPALEHLQEHAPRQRELVRQIFIEASRPFGLTVSGRMEFPEEDGSLGTYWCDVEVSLGRSETLPEAMELLVKTSLSGDWHQGQYCACGFEPHIATITDIARRVVLRGNARTLEWAVPETDPAAFERIAAQKQALRGQAAYESGWDNYETARQLRQEADLLDLTRVHAVWVNDPHVAEALREYQHPSTRLDETEIMEGMEF
>NZ_CP022431.1|WP_089517943.1|56821_57652_+|N-6-DNA-methylase
MSQLDFADFFNQAEDPVPAPVAVPLAAAAREPSSEHRMMSIETARKQFVSVFRHTARHLRRWDVFSDFIALAASELDLATIRAPESMARCRKICERYRPEDISDLHRLFGLMVSALEANFHDFLGAIFMELELGDGRQGQYFTPYSVQSLMARMLMPGVQDAVRREGFFTLSEPTCGAGGMVVAVAECMLEAGLNPSEQMFASCIDIDPVAADMAFIQLSLLGIPAEVITGNTLTLKLSRVRYTPVYYANDFGERLKTQRRINAMMDFMRSLSGAA
>NZ_CP022431.1|WP_019106772.1|56626_56773_+|hypothetical-protein
MQFDPQIVSHAQAFVNARRNGKRARVPAMQVRQWPFFIALVNAGLGLA
>NZ_CP022431.1|WP_089517985.1|56211_56532_+|hypothetical-protein
MYDGERETAEDERLYWQGREKAALKAPAEIDVHRFHDALGVAYPLNWSCSEDGECETFMLAEFYCGQVTDIYARTGVRYFRLRDYSHLSHAQIMTRVKEAFDLSQK
>NZ_CP022431.1|WP_089517942.1|55676_56066_+|hypothetical-protein
MNTHNVKTAASESTETRVLRTNVNGLPSGVAQTLAFLGHLAEDGMEESERAEVLLGSLLSLAEALRDAVPDWSARRPRLPFPLVRAWLAARDIALSQFGEIGQGAWEYALNDLRTELDAGFYFWRDNIW
>NZ_CP022431.1|WP_089517949.1|63614_64004_+|conjugal-transfer-protein
MARRNIYFKEKIEREVQELVEIEIQNGATHGEINFSSMVNDLVNVGLIIKKHQGEGNAFDEEGFNRDLIRKVAGVREGISIMTAMMTEMYLHMRGENSDDKLGELLNQNLSAISQAEYDAESKHFIQKE
>NZ_CP022431.1|WP_063881355.1|64530_65124_-|hypothetical-protein
MKVKEKMGDGRGRPRKYAQGEMQYRKLWLPENLLTELRVAARVRGYTTNDEIISRLITSLQFSPRRPVIKTGEGQRLVALARLFDEFIQSRLEVIRQQYAAELKNQEDKKVFVPGQKRAFSSSFPVNLRRDIDISARFNKQSMNEEIMQRLLGSLNYLTEHQLPENEEVHRLRELAVLFDEFITEKVSRAENPLSSN
>NZ_CP022431.1|WP_089517950.1|65335_65761_+|hypothetical-protein
MKPDVLTPLEKGAVAVALPDGVRPPEGSVIGQLSARFKLKSSAFFLLVKSSPFVQRLLILSGVMLLLSAFPQISCAQDLLAGQKTDINDTFGHGGTVEWIIYVTEFLSCLWLYVKTRNPMVLGGLVLLIIATRTLYPLIAN
>NZ_CP022431.1|WP_039343347.1|65764_66070_+|type-IV-conjugative-transfer-system-protein-TraL
MDERESSKYRFPETLNQQKRWLGLPPEEAFILLGCGLLGFYIDMFIVMLVVGAVLWLFIRHLKKGQGSWWLLNLLYWYLPTMLFRVQFRRVPDSANRHWMQ
>NZ_CP022431.1|WP_089517986.1|66120_66780_+|conjugal-transfer-protein
MKLRVKETRNRLTVALLGGLSGLLALSVAGNCITGGLAWHFYSTQKTITVPMMFDRAFSSTATGGDANLNSMLVRSLASLRLNVTPETVDSQYARLLSWVPPEQRSEMKKTLAVETDYIKKNGISSVFSIEHEFTDTTTGEITVGGTLHASTTNGSLNLVTPDARRVRAASDKDRIDLPDARKAYRFNLHYVDGLIRLTDFSEVKWPAAFDADDSGKKS
>NZ_CP022431.1|WP_089517951.1|66776_67508_+|conjugal-transfer-protein-TraK
MKLTFTALLVAGACLTSSAMAAVSGPTGTVFENNAHLKAQMSNTSPNKVIIDGELITGVTGPENAYNRDTTADGALLITPTTGQDFTIFLETASGISASLDVSPRPGNGRTLRLIPAVTKIKANPDAKAWEESQPWEKTLVSVARTVVNGGVPDAYTELSADRGPAYTPAAGVTLMPERQLAGSHLRVMRYRMSNTGYVTRELSERQFWQKGVRAVMLSTRTLYAGGQGYAWVIFSTDAEGAQ
>NZ_CP022431.1|WP_089517952.1|67504_68896_+|conjugal-transfer-protein-TraB
MSNINTATRRRQWVITGITMAVAAAIGTGVWWYRHHQEELKKPAPVKVDLTGHGLVTSNFTETVTNSVLTQQQNKTATLEKGLDSLSSAVSSQNEAMTRKLEQISSALEKLQNQADKPPSAGSNTGTQSSAGMPANGPLSKGPAGPAQWQVTDPAKGPASGQGSQFYPSKERQGFYPGSGTVRPGGLKRDTFTYAALQKPKYTLPWIPSGSFSEATMIEGADANASVTGQQNTSPVVITLLGDVSMPNGRTYNMDKCRVTGEIYGDISSERGDVRTKNISCILKNGDHIDMPFEGHVSYQGKVGIRGKPVMRNGQILMNAGGAGFLSGLGDGFKSAATPMVGLGGATTIGAGDIFKQGLGGGASKAADTLSQYYIKRAEQYHPVIDIGAGNAVTVVFQQGFRLKTIEQEDAEKEKKESPANPVQQTAATTAANSSKGGSDSTVLNPDEVLRQASQLRLGDTIN
>NZ_CP022431.1|WP_089517953.1|68907_69438_+|transcription/translation-regulatory-transformer-protein-RfaH
MKQWYVLKTLFAQEKRAEAHLVNQEVECWFPLYTGRRLAEGKVTSLKPTPLFPGYGFARFDPEEIHTTTIKATRGVSQIVRFGERLAVMSDRQMDALKKMTGEVVDTKEKPPAHGDTVILESGVFEGFEAVWHEPNGTKRAVMLVTLMGRIVELDLRKLRKEGVRFRHKSCSEYRT
>NZ_CP022431.1|WP_089517954.1|69434_69800_+|hypothetical-protein
MNVIKKKRAVFMATLALLTVNLSVMAWLMCHGFGLSWLMWCVLALASVVTLRLRFSNPDSERVSSATQYGFWCWLVIAGMYIFDAVSGNHSLTHSPGFLFFALSVSVMVTFAFTVMAARCR
>NZ_CP022431.1|WP_089517987.1|69877_70552_+|hypothetical-protein
MLLAGCDYGDRQFDEDRTKALQNPDAFQAYQQLNKDAEKNCHPGVFRATCSEEVHTAYQELALSLYRTALNRRSPAAFIDLFMRDDPPEELQSRMPQFAEELINLATHSAGDRSSARLLATAAHVLERGQWVQKDSVRAAAFFAQAWLAYDTKAPASLSRLYSEQHDEASALLWRLRCIGDCYNKLETAEPPATLSPREILRIQSLAKDRSIITVNGQANWEAK

You can click texts colored in the table to view more detailed information

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022431_1	1.1\|63238\|43\|NZ_CP022431\|CRISPRCasFinder	63238-63280	43	NZ_CP022431	Pantoea ananatis strain YJ76 plasmid p_unamed2	63238-63280	0	1.0
NZ_CP022431_1	1.2\|63304\|41\|NZ_CP022431\|CRISPRCasFinder	63304-63344	41	NZ_CP022431	Pantoea ananatis strain YJ76 plasmid p_unamed2	63304-63344	0	1.0

1. spacer 1.1|63238|43|NZ_CP022431|CRISPRCasFinder matches to NZ_CP022431 (Pantoea ananatis strain YJ76 plasmid p_unamed2) position: , mismatch: 0, identity: 1.0

aatttgccgcgaagtgccggattaacacacacaaaaaggccat	CRISPR spacer
aatttgccgcgaagtgccggattaacacacacaaaaaggccat	Protospacer
*******************************************

2. spacer 1.2|63304|41|NZ_CP022431|CRISPRCasFinder matches to NZ_CP022431 (Pantoea ananatis strain YJ76 plasmid p_unamed2) position: , mismatch: 0, identity: 1.0

attcaggtcttaaaggtgttttgtacccctgttttttgcag	CRISPR spacer
attcaggtcttaaaggtgttttgtacccctgttttttgcag	Protospacer
*****************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022427

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP022431

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection