CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022471	Campylobacter jejuni strain jejuni plasmid pRM1246_ERRC, complete sequence	1 crisprs	NA	0	2	0	0
NZ_CP022470	Campylobacter jejuni strain jejuni chromosome, complete genome	2 crisprs	DEDDh,WYL,cas2,cas1,cas9,csa3	0	6	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022471_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022471_1

17321-17519

Orphan

Consensus_repeat	Method
TATTACATTTAAGTCAATTTTATTTGAAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP022471_1

>merge|NZ_CP022471|1|17321-17519|CRISPRCasFinder
TATTACATTTAAGTCAATTGTTTTTTTAAAGTTCTTATTTTCCATATATTCTTTTCGTAAAAATGTCAAAAATTATTACATTTAAGTCAAAAATTATTACATTTAAGTCAATTTTATTTGAAAATAAGAGGAGTATTTAATAATTTTTGTTGACTTTAATGTAAGTGTATATTACATTTAAGTCAATTTTATTTGAAAA

>NZ_CP022471|1|1|17321-17519|CRISPRCasFinder
TATTACATTTAAGTCAATTGTTTTTTTAAA	GTTCTTATTTTCCATATATTCTTTTCGTAAAAATGTCAAAAAT
TATTACATTTAAGTCAAAAATTATTACATT	TAAGTCAATTTTATTTGAAAATAAGAGGAGTATTTAATAATTTTTGTTGACTTTAATGTAAGTGTA
TATTACATTTAAGTCAATTTTATTTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022471.1\|WP_093958686.1\|13372_13654_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022471.1\|WP_002790346.1\|19971_20586_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|184041
NZ_CP022471.1\|WP_002844160.1\|16888_17146_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022471.1\|WP_011271768.1\|21720_24489_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP022471.1\|WP_011271766.1\|10509_11214_-\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NZ_CP022471.1\|WP_002779777.1\|12627_13179_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022471.1\|WP_011187234.1\|16403_16667_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP022471.1\|WP_002842869.1\|25062_25728_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022471.1\|WP_011187236.1\|21444_21708_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP022471.1\|WP_002835056.1\|17848_18052_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NZ_CP022471.1\|WP_057980886.1\|4689_10488_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226993
NZ_CP022471.1\|WP_002809051.1\|20582_20960_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846
NZ_CP022471.1\|WP_011187235.1\|18055_19849_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|238545
NZ_CP022471.1\|WP_002818418.1\|17637_17856_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP022471.1\|WP_002809052.1\|20950_21274_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022471.1\|WP_011187233.1\|15069_16296_+\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP022471.1\|WP_011271769.1\|24499_25066_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP022471.1\|WP_011187232.1\|11239_12628_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP022471.1\|WP_002804272.1\|14297_14951_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022471.1\|WP_002826068.1\|13682_14294_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022471.1\|WP_002790346.1\|19971_20586_-\|recombinase-family-protein	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	4.15385e-39
NZ_CP022471.1\|WP_057980886.1\|4689_10488_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	1.40495e-72
NZ_CP022471.1\|WP_002809051.1\|20582_20960_-\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	6.64868e-09
NZ_CP022471.1\|WP_011187235.1\|18055_19849_+\|AAA-family-ATPase	gnl\|CDD\|238545	cd01125, repA, Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.	3.65493e-13
NZ_CP022471.1\|WP_011271768.1\|21720_24489_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP022471.1\|WP_002818418.1\|17637_17856_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.28325e-11
NZ_CP022471.1\|WP_011271769.1\|24499_25066_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	8.15405e-37
NZ_CP022471.1\|WP_011187236.1\|21444_21708_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	4.3615e-05
NZ_CP022471.1\|WP_011187233.1\|15069_16296_+\|toprim-domain-containing-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	1.90731e-28
NZ_CP022471.1\|WP_011187232.1\|11239_12628_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.31611e-05
NZ_CP022471.1\|WP_002835056.1\|17848_18052_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	3.54531e-13

>NZ_CP022471.1|WP_002844160.1|16888_17146_-|hypothetical-protein
MCKIIKYLDYTKLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIYENIAVFFQDCFLMSVIFIIGITGLFHTCKGLRKYKEILKKV
>NZ_CP022471.1|WP_011187234.1|16403_16667_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAKTDTECANAYKANYSKSFQKPRESAMEFFKNNK
>NZ_CP022471.1|WP_011187233.1|15069_16296_+|toprim-domain-containing-protein
MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFSQWLYPHQNKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSGAYNGFLDDYPAGFMQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEILTLQEKTALKLENEYNNARWANSNHAYLKKKGFDENFYLKQDNKGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKSLEHCKEFIITEGFATAATIYKALNKPVIMGVDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGVETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLKSFKSMEKTQPEKEITR
>NZ_CP022471.1|WP_002804272.1|14297_14951_+|hypothetical-protein
MNNTINFNELFSQIRLSSYNNDIVKHYDNLKCVGKITPKLATLEIILRNKLDNKLSEKDNDWIKNSNDEKIKKSKEEIEHREKNRILSHHQYLSRISLGTIIHLIKENKLQNSIMDLKNINFRNYNQYNRNFFFENGIKLRFRNTHKVDIVLSLLQNLRNRSYHWENILKTTEKNGKHYPRLTTKIKNTHIGVDPQKIDFFLSDLIKTFNEKILEYC
>NZ_CP022471.1|WP_002826068.1|13682_14294_+|hypothetical-protein
MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFDVAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENINPEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREKFEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR
>NZ_CP022471.1|WP_093958686.1|13372_13654_+|hypothetical-protein
MFKESKLIEELKREYDEKLKKLLQKEKENKERIYKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NZ_CP022471.1|WP_002779777.1|12627_13179_-|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NZ_CP022471.1|WP_011187232.1|11239_12628_-|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNKDKYTKDIKTGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDIYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFANALNELGIEAKATNKKQREVEINQEFSVKLNTNNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVIKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGKRGRTDNSLRWTSARNNEITRNG
>NZ_CP022471.1|WP_011271766.1|10509_11214_-|GNAT-family-N-acetyltransferase
MKQEIYTSKFYISKRNGKEVCFKLDFEIKAFEENQKFYYVEIYAIIDYQYLKNEIAVIPNTNKNRNHWILRYDFNSWNFHSSIMLHSDYRSLGIGTFVINKMLEIALNYIPTARLSGKLSAVDEVKLENHIRRDKLYKNLGFVFNENNIGFSINSISNLKIRKDFDYIQEVRIFDMCNQLAELQYLKAGNDKLLKIYKEDFYKEKSKNDTLRARIKLMSFVLIALAVWIVYLLK
>NZ_CP022471.1|WP_057980886.1|4689_10488_+|DEAD/DEAH-box-helicase-family-protein
MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEHREVTDNIERTSISSNTPSVDRQENSTIQLDNTREMGRVLSEHNQESRNVRSNDTSIATNTNGISNLGEQRSRQEERTGANRYGDTSRRANKSQSIHSDRTPNLFSFISRNDDERQGTDAARSYNQQSVLETAARNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYAEYEKAKTSTLDAFYTPKIIIDTIYQGLNQLGFNNDDHTKEIFEPSAGIGSFLSYAKNYSDKYHFTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDPTLNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNFIAEQATFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETKIKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIGSDDELVFSKPVLNEHDTRRIKKLIALRDQFNTLIEYEKNESNDLLVENQRKSLNKLYDEFVAKEGYLNRDANKKAFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKISTPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAEKYLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYYKQFIEETLQITPKDYDLFLMEKTGEWSLKGFGYSLSSYIRSEYATERIGCFDLLEHGLLRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENIYNERFNTNIEPRYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREKFFSKITTNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKRNDDNVMRYSVKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDISGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKEKGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNNDIMKYQKDFVPKLYNDKPINIVAPRSKEIAEFIGIQDENGRWNEGSIVWRMEHQQDDITRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIFCDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSDLRQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKYYINDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGERTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLEKFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQKNYKSGFVPKSAKILEDLNKNNNIQKEYDIEI
>NZ_CP022471.1|WP_002818418.1|17637_17856_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDQDGYFARILELEGCVSQGNTYEETLANIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP022471.1|WP_002835056.1|17848_18052_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MPELPRMTAKEAEKLLLQNNFLIDRQKGSHRIYKKGLYRMVIPHHIGEILHPKIIKQLFEIIEVAKD
>NZ_CP022471.1|WP_011187235.1|18055_19849_+|AAA-family-ATPase
MPKRNTIDTITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSVEDKNKAILGRIKNIESFYSFNTAELEFSNELPKINKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVTMNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANDSSYVISLKNSLLTQTHRNILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTEISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYIKKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRFYKESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFHNKYKNENDLFFIYESNNRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD
>NZ_CP022471.1|WP_002790346.1|19971_20586_-|recombinase-family-protein
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIHLDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIKSIWKLLYKDNGKSYDGLLWFIKKRKLKGS
>NZ_CP022471.1|WP_002809051.1|20582_20960_-|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDLER
>NZ_CP022471.1|WP_002809052.1|20950_21274_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP022471.1|WP_011187236.1|21444_21708_+|TrbC/VirB2-family-protein
MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLLTIALMWGASKIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT
>NZ_CP022471.1|WP_011271768.1|21720_24489_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLVGFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSNFPKISVFGLNAEPSFEKLIPFSSLINDSVVITKDYFLMTTWEIGGISFEAEEDDELDIKNDLLNMLFKSFANESVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLRKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIEQYLNGNLQNIQFGHDTIQFNQNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNPVKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLELKEIYKNS
>NZ_CP022471.1|WP_011271769.1|24499_25066_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKRHFHVLRDIENILNDLREIGTSQDLSNFGETYRNTEIRGFGKVKGKTRKDRCYNLTRDGFSLLAMGFTGKKALQFKIAFINAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ
>NZ_CP022471.1|WP_002842869.1|25062_25728_+|hypothetical-protein
MSDKELQKEILALENDVKQLEATIDVIKQRITHLKDIAWDRQSKKESSQMYKVLKEDKTHTRVKSNVGDIKVDKDFMDKEIKKHLDNPNLRGMVTTQEMLSFPKVAKGVEANNEARGYTWQVKANDGNTLVYGSRKYETNNEKIHRLATSHSKTEKNERQAEVGGRSHPHHPIFNDFNFRKSAENIISQQNKSTNDFKAKLEEFSTKKTNAIESINKEFKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022471_1	1.1\|17351\|43\|NZ_CP022471\|CRISPRCasFinder	17351-17393	43	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	74954-74996	0	1.0
NZ_CP022471_1	1.1\|17351\|43\|NZ_CP022471\|CRISPRCasFinder	17351-17393	43	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	38423-38465	0	1.0
NZ_CP022471_1	1.1\|17351\|43\|NZ_CP022471\|CRISPRCasFinder	17351-17393	43	NC_006135	Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence	21203-21245	0	1.0
NZ_CP022471_1	1.1\|17351\|43\|NZ_CP022471\|CRISPRCasFinder	17351-17393	43	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	2835-2877	0	1.0
NZ_CP022471_1	1.1\|17351\|43\|NZ_CP022471\|CRISPRCasFinder	17351-17393	43	NZ_CP022471	Campylobacter jejuni strain jejuni plasmid pRM1246_ERRC, complete sequence	17351-17393	0	1.0
NZ_CP022471_1	1.2\|17424\|66\|NZ_CP022471\|CRISPRCasFinder	17424-17489	66	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	74837-74902	6	0.909
NZ_CP022471_1	1.2\|17424\|66\|NZ_CP022471\|CRISPRCasFinder	17424-17489	66	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	38496-38561	6	0.909
NZ_CP022471_1	1.2\|17424\|66\|NZ_CP022471\|CRISPRCasFinder	17424-17489	66	NC_006135	Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence	21276-21341	6	0.909
NZ_CP022471_1	1.2\|17424\|66\|NZ_CP022471\|CRISPRCasFinder	17424-17489	66	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	2908-2973	6	0.909
NZ_CP022471_1	1.2\|17424\|66\|NZ_CP022471\|CRISPRCasFinder	17424-17489	66	NZ_CP022471	Campylobacter jejuni strain jejuni plasmid pRM1246_ERRC, complete sequence	17424-17489	6	0.909

1. spacer 1.1|17351|43|NZ_CP022471|CRISPRCasFinder matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

2. spacer 1.1|17351|43|NZ_CP022471|CRISPRCasFinder matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

3. spacer 1.1|17351|43|NZ_CP022471|CRISPRCasFinder matches to NC_006135 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

4. spacer 1.1|17351|43|NZ_CP022471|CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

5. spacer 1.1|17351|43|NZ_CP022471|CRISPRCasFinder matches to NZ_CP022471 (Campylobacter jejuni strain jejuni plasmid pRM1246_ERRC, complete sequence) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

6. spacer 1.2|17424|66|NZ_CP022471|CRISPRCasFinder matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

7. spacer 1.2|17424|66|NZ_CP022471|CRISPRCasFinder matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

8. spacer 1.2|17424|66|NZ_CP022471|CRISPRCasFinder matches to NC_006135 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

9. spacer 1.2|17424|66|NZ_CP022471|CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

10. spacer 1.2|17424|66|NZ_CP022471|CRISPRCasFinder matches to NZ_CP022471 (Campylobacter jejuni strain jejuni plasmid pRM1246_ERRC, complete sequence) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP022470

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022470_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022470_1

1368656-1368735

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022470_1

>merge|NZ_CP022470|1|1368656-1368735|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP022470|1|1|1368656-1368735|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022470.1\|WP_002877377.1\|1364751_1365423_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP022470.1\|WP_002877374.1\|1362426_1363920_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP022470.1\|WP_002877370.1\|1358945_1360286_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP022470.1\|WP_052776153.1\|1371830_1373192_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP022470.1\|WP_014517092.1\|1369037_1370408_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP022470.1\|WP_002877378.1\|1366624_1367623_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP022470.1\|WP_012006765.1\|1377908_1379105_-\|phosphonopyruvate-decarboxylase	unknown	unknown	gnl\|CDD\|274508
NZ_CP022470.1\|WP_002866677.1\|1379104_1380427_-\|phosphoenolpyruvate-mutase	unknown	unknown	gnl\|CDD\|274077
NZ_CP022470.1\|WP_002825806.1\|1371066_1371414_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP022470.1\|WP_002877372.1\|1360588_1362430_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP022470.1\|WP_002855339.1\|1368255_1368582_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP022470.1\|WP_002880391.1\|1371414_1371834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022470.1\|WP_014517091.1\|1367682_1368228_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP022470.1\|WP_012006764.1\|1376860_1377916_-\|phosphonoacetaldehyde-reductase	unknown	unknown	gnl\|CDD\|341461
NZ_CP022470.1\|WP_002855429.1\|1370530_1371067_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP022470.1\|WP_002783833.1\|1365419_1366622_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP022470.1\|WP_002866681.1\|1374382_1375567_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP022470.1\|WP_002866682.1\|1373188_1374310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022470.1\|WP_002779147.1\|1360367_1360592_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP022470.1\|WP_002877376.1\|1363923_1364748_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416

Protein	Function_ID	Function_description	E-value
NZ_CP022470.1\|WP_002877377.1\|1364751_1365423_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	7.57093e-86
NZ_CP022470.1\|WP_002877374.1\|1362426_1363920_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	2.3677e-154
NZ_CP022470.1\|WP_002877370.1\|1358945_1360286_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	2.97497e-117
NZ_CP022470.1\|WP_052776153.1\|1371830_1373192_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	2.2328e-79
NZ_CP022470.1\|WP_014517092.1\|1369037_1370408_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP022470.1\|WP_002877378.1\|1366624_1367623_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	3.35917e-168
NZ_CP022470.1\|WP_012006765.1\|1377908_1379105_-\|phosphonopyruvate-decarboxylase	gnl\|CDD\|274508	TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (AEP).	1.24048e-106
NZ_CP022470.1\|WP_002866677.1\|1379104_1380427_-\|phosphoenolpyruvate-mutase	gnl\|CDD\|274077	TIGR02320, Phosphoenolpyruvate_phosphomutase, phosphoenolpyruvate mutase. This family consists of examples of phosphoenolpyruvate phosphomutase, an enzyme that creates a C-P bond as the first step in the biosynthesis of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for phosphonopyruvate decarboxylase (aepY). Since the PEP phosphomutase reaction favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (AEP). A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.	1.01291e-155
NZ_CP022470.1\|WP_002825806.1\|1371066_1371414_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40
NZ_CP022470.1\|WP_002877372.1\|1360588_1362430_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP022470.1\|WP_002855339.1\|1368255_1368582_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NZ_CP022470.1\|WP_014517091.1\|1367682_1368228_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	5.6485e-57
NZ_CP022470.1\|WP_012006764.1\|1376860_1377916_-\|phosphonoacetaldehyde-reductase	gnl\|CDD\|341461	cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor, although NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes.	1.43189e-115
NZ_CP022470.1\|WP_002855429.1\|1370530_1371067_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.19231e-91
NZ_CP022470.1\|WP_002783833.1\|1365419_1366622_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP022470.1\|WP_002866681.1\|1374382_1375567_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP022470.1\|WP_002779147.1\|1360367_1360592_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP022470.1\|WP_002877376.1\|1363923_1364748_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0

>NZ_CP022470.1|WP_002855339.1|1368255_1368582_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP022470.1|WP_014517091.1|1367682_1368228_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNINEVCEEIKDEVKKYYEKLQKN
>NZ_CP022470.1|WP_002877378.1|1366624_1367623_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDEERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP022470.1|WP_002783833.1|1365419_1366622_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP022470.1|WP_002877377.1|1364751_1365423_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVVFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEVIDLNYEKLIIAYEPIYSIGTGVSAQATDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP022470.1|WP_002877376.1|1363923_1364748_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEVHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP022470.1|WP_002877374.1|1362426_1363920_-|hydrogenase-small-subunit
MTKLSNEELKNILEGRIKKLENSILKEDKIVNEESVKILAKHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKVGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS
>NZ_CP022470.1|WP_002877372.1|1360588_1362430_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLYIAKILLN
>NZ_CP022470.1|WP_002779147.1|1360367_1360592_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP022470.1|WP_002877370.1|1358945_1360286_+|MmgE/PrpD-family-protein
MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKEECVLNAFKAFENLSTDKNTPIWVNDQKLVPIYAAMLDGIASHALDFDDTHTEAILHASAILTPLCLSYGFHVNKDAKKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHFAKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELGKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLDSYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQKDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP022470.1|WP_014517092.1|1369037_1370408_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGEELKEFSKEVYKHLDDEIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIHVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEIKARLKN
>NZ_CP022470.1|WP_002855429.1|1370530_1371067_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP022470.1|WP_002825806.1|1371066_1371414_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP022470.1|WP_002880391.1|1371414_1371834_-|hypothetical-protein
MKRVRVKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_CP022470.1|WP_052776153.1|1371830_1373192_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYILGDRKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEDFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP022470.1|WP_002866682.1|1373188_1374310_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIEADLSKIEKKEQFPFFKISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANVIIDKLKRNESKQDYELILVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP022470.1|WP_002866681.1|1374382_1375567_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELEIEVWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQDIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEQTILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPILVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP022470.1|WP_012006764.1|1376860_1377916_-|phosphonoacetaldehyde-reductase
MSDFRYYNPVKINFNVSYEHIIDSLKTDSILLLTSKSFYKKGLTKILEDKLGDRLKGVIYDILPNPEINYAELIKKDYRNYKEIIAFGGGSVLDMAKYFSVSGDVIRNGGNLDISNSCSFIPIFAIPTTAGTSSELTKWATLWDTPNNIKFSLSDENLYCKEAFYDPNLFLNIPRELTIYTALDALSHSIESIWNKNSNAISTNHAIKAIELILEYLPRLQNDLNSKELRLKIILASIYAGLAFSNTQTALAHAISYPITMKLGISHGLACSFTIPILLQCIDDVKINKLLSIYKEKIISLFHILNISTNLKSYGITKQFIEDIFDNLNSRAKNGMFDLELTKKRFLLCIK
>NZ_CP022470.1|WP_012006765.1|1377908_1379105_-|phosphonopyruvate-decarboxylase
MLNMEFFGEALKTIGCFQFSGVPCSYLSPMINYAINENSFIMSNNEGDAIAIATGISLANMEKKDNFGVVLMQNSGLSNALSPLTSLNYTFEIPILGFVSLRGERDDQDRNTDEPQHELLGTITDRLLETCNIAYDFLSPDYNQAIRQLQIAHKYLKQQKSYFFIVKNNTFEKCSLKNFNIPVKNIGREIIQQENSLAEFQPKRIEILECIANFSYKNNIALFATTGKTGRELYEIRDTENQLYMVGSMGCVSSLALGVSLQNSKKIIAIDGDSALLMRMGALTTNAYYTKNNNKGNFCHILLDNESHDSTGGQFNLSPFINFPQIAHFCGYEKIFIINSLDDLIQALDFFIARKEGGAVFIYVKILKGSKGKLGRPKITPKEVALRIAQFLNRKSDE
>NZ_CP022470.1|WP_002866677.1|1379104_1380427_-|phosphoenolpyruvate-mutase
MNSNIVYIAMSADLIHPGHINIMKLAREYANKIEGKVVLGLLTDSAIASYKRLPYMNYEQRKIIVESIGFIDEVIPQNTLSYADNIIKLKPKFVIHGDDWKEGPQKRERSNVIALLKELGCGELIEPKYTQGISSTELNQNAKSLGITTNARLSLLRRLINAKKPLRILETHSAISALIAENTFVSKNGTKIEFDGFWSSSLTDSTSRGKPDIEAVELSSRLNTVNEIFEVTSKPLIYDADTGGKLEHFVFTVRSLERIGVSAVIIEDKIGLKKNSLLGNDVIQNQDSIEDFCSKIQAGKKAQITNEFMIIARIESLILDKGMDDALQRAFAYIQAGADGIMIHSRHKDGDEIIDFLKQFRLKDQDTPIVVVPTSFNEIKASDLATYGANIIIYANHMLRASFVAMQNVAKEILENDRSKESESKCMKINEILNLIPGTV

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Crispr_ID: NZ_CP022470_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022470_2

1473637-1474068

orTypeII

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

6 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP022470_2

>merge|NZ_CP022470|2|1473637-1474068|CRISPRCasFinder,CRT,PILER-CR
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGCTTTAGGAAATGCTTTAAAACGCTTTGGAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATGAGTTATCAAGTTTTTGTTTTTAATAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTTTGAAACATCAACATCTTTAATCATATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGAAGATGAGGTTGCGGGTTTAATAACGACGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGGAAAACAAATCATAACATTATTTAAAATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCAAAGAAGGTTTAGAAAGTGGCAAAGATTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP022470|2|2|1473637-1474068|CRISPRCasFinder
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCTTTAGGAAATGCTTTAAAACGCTTTGGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGAGTTATCAAGTTTTTGTTTTTAATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTTGAAACATCAACATCTTTAATCATAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GAAGATGAGGTTGCGGGTTTAATAACGACG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGAAAACAAATCATAACATTATTTAAAAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAAGAAGGTTTAGAAAGTGGCAAAGATTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP022470|2|1|1473637-1474068|CRT
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCTTTAGGAAATGCTTTAAAACGCTTTGGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGAGTTATCAAGTTTTTGTTTTTAATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTTGAAACATCAACATCTTTAATCATAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GAAGATGAGGTTGCGGGTTTAATAACGACG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGAAAACAAATCATAACATTATTTAAAAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAAGAAGGTTTAGAAAGTGGCAAAGATTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP022470|2|1|1473769-1474068|PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTTGAAACATCAACATCTTTAATCATAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GAAGATGAGGTTGCGGGTTTAATAACGACG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGAAAACAAATCATAACATTATTTAAAAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAAGAAGGTTTAGAAAGTGGCAAAGATTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022470.1\|WP_022552435.1\|1475524_1478479_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP022470.1\|WP_002867064.1\|1474637_1475528_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP022470.1\|WP_002867062.1\|1471880_1472327_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP022470.1\|WP_002851264.1\|1464218_1464860_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP022470.1\|WP_012006785.1\|1467826_1468540_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP022470.1\|WP_171770385.1\|1474213_1474627_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP022470.1\|WP_022552433.1\|1464856_1467661_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP022470.1\|WP_002867063.1\|1472330_1473521_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP022470.1\|WP_002860686.1\|1481155_1481761_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP022470.1\|WP_002851546.1\|1484311_1484761_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP022470.1\|WP_002877469.1\|1468843_1469992_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP022470.1\|WP_002867219.1\|1480105_1481095_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP022470.1\|WP_002851537.1\|1467660_1467852_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP022470.1\|WP_002874621.1\|1470115_1471657_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP022470.1\|WP_002855824.1\|1463289_1464222_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP022470.1\|WP_002867218.1\|1481757_1482507_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP022470.1\|WP_002855377.1\|1482481_1483213_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
NZ_CP022470.1\|WP_002860682.1\|1484887_1486108_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NZ_CP022470.1\|WP_002867061.1\|1471658_1471880_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP022470.1\|WP_002860683.1\|1483209_1484247_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292

Protein	Function_ID	Function_description	E-value
NZ_CP022470.1\|WP_022552435.1\|1475524_1478479_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP022470.1\|WP_002867064.1\|1474637_1475528_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.27175e-120
NZ_CP022470.1\|WP_002867062.1\|1471880_1472327_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.04214e-42
NZ_CP022470.1\|WP_002851264.1\|1464218_1464860_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP022470.1\|WP_012006785.1\|1467826_1468540_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000581315
NZ_CP022470.1\|WP_171770385.1\|1474213_1474627_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.3054e-55
NZ_CP022470.1\|WP_022552433.1\|1464856_1467661_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP022470.1\|WP_002867063.1\|1472330_1473521_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	1.19384e-142
NZ_CP022470.1\|WP_002860686.1\|1481155_1481761_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.32317e-69
NZ_CP022470.1\|WP_002851546.1\|1484311_1484761_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP022470.1\|WP_002877469.1\|1468843_1469992_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP022470.1\|WP_002867219.1\|1480105_1481095_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP022470.1\|WP_002851537.1\|1467660_1467852_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP022470.1\|WP_002874621.1\|1470115_1471657_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	6.65373e-119
NZ_CP022470.1\|WP_002855824.1\|1463289_1464222_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.52433e-86
NZ_CP022470.1\|WP_002867218.1\|1481757_1482507_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.07556e-92
NZ_CP022470.1\|WP_002855377.1\|1482481_1483213_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.57422e-98
NZ_CP022470.1\|WP_002860682.1\|1484887_1486108_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP022470.1\|WP_002867061.1\|1471658_1471880_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP022470.1\|WP_002860683.1\|1483209_1484247_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	4.14058e-33

>NZ_CP022470.1|WP_002867063.1|1472330_1473521_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDIIFMP
>NZ_CP022470.1|WP_002867062.1|1471880_1472327_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDDISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP022470.1|WP_002867061.1|1471658_1471880_+|MoaD/ThiS-family-protein
MIKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP022470.1|WP_002874621.1|1470115_1471657_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGKERIYRFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP022470.1|WP_002877469.1|1468843_1469992_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKVFKEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLRN
>NZ_CP022470.1|WP_012006785.1|1467826_1468540_-|molecular-chaperone-TorD-family-protein
MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIAMAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP022470.1|WP_002851537.1|1467660_1467852_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP022470.1|WP_022552433.1|1464856_1467661_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAYYVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP022470.1|WP_002851264.1|1464218_1464860_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP022470.1|WP_002855824.1|1463289_1464222_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVASLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP022470.1|WP_171770385.1|1474213_1474627_-|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NZ_CP022470.1|WP_002867064.1|1474637_1475528_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIGQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP022470.1|WP_022552435.1|1475524_1478479_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKILNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAEIECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKLSDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLAKNLPEKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAAIIAYANNSIVKAFSDFKKEQESNSVELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP022470.1|WP_002867219.1|1480105_1481095_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEDKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYIIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP022470.1|WP_002860686.1|1481155_1481761_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLDSQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM
>NZ_CP022470.1|WP_002867218.1|1481757_1482507_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NZ_CP022470.1|WP_002855377.1|1482481_1483213_+|glucosaminidase-domain-containing-protein
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP022470.1|WP_002860683.1|1483209_1484247_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>NZ_CP022470.1|WP_002851546.1|1484311_1484761_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP022470.1|WP_002860682.1|1484887_1486108_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022470_2	2.6\|1474003\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1474003-1474032	30	KF751797	Campylobacter phage CJIE4-5, complete genome	14067-14096	0	1.0
NZ_CP022470_2	2.6\|1474003\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1474003-1474032	30	KF751794	Campylobacter phage CJIE4-2, complete genome	13820-13849	0	1.0
NZ_CP022470_2	2.6\|1474003\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1474003-1474032	30	KF751795	Campylobacter phage CJIE4-3, complete genome	12148-12177	0	1.0
NZ_CP022470_2	2.6\|1474003\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1474003-1474032	30	KF751796	Campylobacter phage CJIE4-4, complete genome	12186-12215	0	1.0
NZ_CP022470_2	2.6\|1474003\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1474003-1474032	30	KF751793	Campylobacter phage CJIE4-1, complete genome	15094-15123	0	1.0
NZ_CP022470_2	2.1\|1473673\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473673-1473702	30	MN530981	Campylobacter phage DA10, complete genome	7439-7468	1	0.967
NZ_CP022470_2	2.6\|1474003\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1474003-1474032	30	MN530981	Campylobacter phage DA10, complete genome	33730-33759	1	0.967
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	MN530981	Campylobacter phage DA10, complete genome	1728-1757	4	0.867
NZ_CP022470_2	2.1\|1473673\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473673-1473702	30	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	32985-33014	6	0.8
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	MT001829	Salmonella phage SE_PL, complete genome	186350-186379	6	0.8
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	MK773491	Salmonella phage 7t3, complete genome	162386-162415	6	0.8
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	MK268344	Salmonella phage Munch, complete genome	99702-99731	6	0.8
NZ_CP022470_2	2.6\|1474003\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1474003-1474032	30	MN850656	Flavobacterium phage fF4, complete genome	27890-27919	6	0.8
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	NZ_CP021660	Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-1, complete sequence	132458-132487	7	0.767
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	MN692979	Marine virus AFVG_117M14, complete genome	33731-33760	7	0.767
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	MN693304	Marine virus AFVG_25M107, complete genome	34893-34922	7	0.767
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	MN693036	Marine virus AFVG_117M78, complete genome	34887-34916	7	0.767
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	AP014289	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C75, * SEQUENCING IN PROGRESS *	15404-15433	7	0.767
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	NZ_CP041255	Enterococcus faecium strain 515 plasmid p32, complete sequence	8275-8304	7	0.767
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	HG796310	Uncultured bacterium plasmid pRGI00361	4351-4380	7	0.767
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	NZ_KY290886	Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence	48134-48163	7	0.767
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	NZ_CP027515	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence	4999-5028	7	0.767
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	MN855776	Siphoviridae sp. isolate 36, complete genome	8743-8772	7	0.767
NZ_CP022470_2	2.5\|1473937\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473937-1473966	30	MK448864	Streptococcus phage Javan180, complete genome	26954-26983	7	0.767
NZ_CP022470_2	2.5\|1473937\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473937-1473966	30	MK448694	Streptococcus phage Javan179, complete genome	36959-36988	7	0.767
NZ_CP022470_2	2.5\|1473937\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473937-1473966	30	MK448851	Streptococcus phage Javan14, complete genome	38615-38644	7	0.767
NZ_CP022470_2	2.5\|1473937\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473937-1473966	30	MK250029	Prevotella phage Lak-C1, complete genome	286866-286895	7	0.767
NZ_CP022470_2	2.5\|1473937\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473937-1473966	30	MK250016	Prevotella phage Lak-A1, complete genome	320836-320865	7	0.767
NZ_CP022470_2	2.5\|1473937\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473937-1473966	30	MK250019	Prevotella phage Lak-A2, complete genome	241627-241656	7	0.767
NZ_CP022470_2	2.5\|1473937\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473937-1473966	30	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	17717-17746	7	0.767
NZ_CP022470_2	2.5\|1473937\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473937-1473966	30	NC_028666	Streptococcus phage Str-PAP-1, complete genome	9431-9460	7	0.767
NZ_CP022470_2	2.1\|1473673\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473673-1473702	30	AP013387	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C42-MedDCM-OCT-S29-C52	5428-5457	8	0.733
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	30567-30596	8	0.733
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	NC_022994	Geobacillus sp. 1121 plasmid pGTG5, complete sequence	922-951	8	0.733
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	CP033551	Acinetobacter nosocomialis strain 2014S01-097 plasmid p2014S01-097-1, complete sequence	4662-4691	8	0.733
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	NZ_LR214943	Mycoplasma orale strain NCTC10112 plasmid 4	3253-3282	8	0.733
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	KY705259	Streptococcus phage P5641, complete genome	31863-31892	8	0.733
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	NC_031024	Bacillus phage Belinda, complete genome	102279-102308	8	0.733
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	NC_019679	Rivularia sp. PCC 7116 plasmid pRIV7116.01, complete sequence	22041-22070	8	0.733
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	NC_028925	Enterobacteria phage vB_EcoM_VR25, complete genome	38407-38436	8	0.733
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	NC_048665	Clostridium phage phiCDHM14, complete genome	26677-26706	8	0.733
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	JX145342	Clostridium phage phiMMP04, complete genome	25643-25672	8	0.733
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	HG796225	Clostridium phage phiCDHM13 complete genome	26709-26738	8	0.733
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	LN681538	Clostridium phage phiCD481-1, complete genome	26446-26475	8	0.733
NZ_CP022470_2	2.3\|1473805\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473805-1473834	30	HG798901	Clostridium phage phiCDHM11 complete genome	26706-26735	8	0.733
NZ_CP022470_2	2.5\|1473937\|30\|NZ_CP022470\|CRISPRCasFinder,CRT,PILER-CR	1473937-1473966	30	KU594606	Cyanophage S-RIM32 isolate RW_108_0702, complete genome	163635-163664	8	0.733
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	NC_007930	Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence	117091-117120	9	0.7
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	4449-4478	9	0.7
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	252391-252420	9	0.7
NZ_CP022470_2	2.2\|1473739\|30\|NZ_CP022470\|CRISPRCasFinder,CRT	1473739-1473768	30	CP002037	Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence	117319-117348	9	0.7
NZ_CP022470_1	1.1\|1368679\|34\|NZ_CP022470\|CRISPRCasFinder	1368679-1368712	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.6|1474003|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 0, identity: 1.0

caaagaaggtttagaaagtggcaaagattt	CRISPR spacer
caaagaaggtttagaaagtggcaaagattt	Protospacer
******************************

2. spacer 2.6|1474003|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 0, identity: 1.0

caaagaaggtttagaaagtggcaaagattt	CRISPR spacer
caaagaaggtttagaaagtggcaaagattt	Protospacer
******************************

3. spacer 2.6|1474003|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 0, identity: 1.0

caaagaaggtttagaaagtggcaaagattt	CRISPR spacer
caaagaaggtttagaaagtggcaaagattt	Protospacer
******************************

4. spacer 2.6|1474003|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 0, identity: 1.0

caaagaaggtttagaaagtggcaaagattt	CRISPR spacer
caaagaaggtttagaaagtggcaaagattt	Protospacer
******************************

5. spacer 2.6|1474003|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 0, identity: 1.0

caaagaaggtttagaaagtggcaaagattt	CRISPR spacer
caaagaaggtttagaaagtggcaaagattt	Protospacer
******************************

6. spacer 2.1|1473673|30|NZ_CP022470|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

gctttaggaaatgctttaaaacgctttgga	CRISPR spacer
gctttaggaaatgctttaaaacgctttggt	Protospacer
*****************************

7. spacer 2.6|1474003|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

caaagaaggtttagaaagtggcaaagattt	CRISPR spacer
caaagaaggtttagaaagtggtaaagattt	Protospacer
*********************.********

8. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 4, identity: 0.867

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
tatgagttatcaagtttttgtatttagcag	Protospacer
********************* ****..*.

9. spacer 2.1|1473673|30|NZ_CP022470|CRISPRCasFinder,CRT matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 6, identity: 0.8

gctttaggaaatgctttaaaacgctttgga	CRISPR spacer
gctttaggaaatgctctaaaatgtctttaa	Protospacer
***************.*****.*..** .*

10. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MT001829 (Salmonella phage SE_PL, complete genome) position: , mismatch: 6, identity: 0.8

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
gtcctgaaaaatcaatatctttaatcattt	Protospacer
 *..***** *****.************ *

11. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MK773491 (Salmonella phage 7t3, complete genome) position: , mismatch: 6, identity: 0.8

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
gtcctgaaaaatcaatatctttaatcattt	Protospacer
 *..***** *****.************ *

12. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 6, identity: 0.8

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
gtcctgaaaaatcaatatctttaatcattt	Protospacer
 *..***** *****.************ *

13. spacer 2.6|1474003|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MN850656 (Flavobacterium phage fF4, complete genome) position: , mismatch: 6, identity: 0.8

caaagaaggtttagaaagtggcaaagattt	CRISPR spacer
gaaagaaggcttagaaagtagcaaagtaat	Protospacer
 ********.*********.******   *

14. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to NZ_CP021660 (Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-1, complete sequence) position: , mismatch: 7, identity: 0.767

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
gtagtgttgtcaaatttttgtttttaatag	Protospacer
   * ***.****.***************.

15. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MN692979 (Marine virus AFVG_117M14, complete genome) position: , mismatch: 7, identity: 0.767

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
gttttgatacatcaacacctttaattttca	Protospacer
 ****** *********.*******. *

16. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MN693304 (Marine virus AFVG_25M107, complete genome) position: , mismatch: 7, identity: 0.767

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
gttttgatacatcaacacctttaattttca	Protospacer
 ****** *********.*******. *

17. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MN693036 (Marine virus AFVG_117M78, complete genome) position: , mismatch: 7, identity: 0.767

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
gttttgatacatcaacacctttaattttca	Protospacer
 ****** *********.*******. *

18. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to AP014289 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C75, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
attttgaaacatcaaaatctttaggcactc	Protospacer
 ************** *******. **. .

19. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041255 (Enterococcus faecium strain 515 plasmid p32, complete sequence) position: , mismatch: 7, identity: 0.767

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
tttttgaaacatctacatttttattatcgt	Protospacer
************* ****.**** *  ..*

20. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to HG796310 (Uncultured bacterium plasmid pRGI00361) position: , mismatch: 7, identity: 0.767

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
gtttctgaacatcaacagctttaatcattg	Protospacer
 ***. .********** **********

21. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY290886 (Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence) position: , mismatch: 7, identity: 0.767

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
tttttgaaacatctacatttttattatcgt	Protospacer
************* ****.**** *  ..*

22. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027515 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
tttttgaaacatctacatttttattatcgt	Protospacer
************* ****.**** *  ..*

23. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MN855776 (Siphoviridae sp. isolate 36, complete genome) position: , mismatch: 7, identity: 0.767

--tttttgaaacatcaacatctttaatcatat	CRISPR spacer
aagtattaaa--atcaacatctttaatcatta	Protospacer
   * **.**  ******************

24. spacer 2.5|1473937|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MK448864 (Streptococcus phage Javan180, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacaaatcataacattatttaaaat	CRISPR spacer
taaagagcaaatcaaaacattatttaaaaa	Protospacer
 ..*.*.******* **************

25. spacer 2.5|1473937|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacaaatcataacattatttaaaat	CRISPR spacer
taaagagcaaatcaaaacattatttaaaaa	Protospacer
 ..*.*.******* **************

26. spacer 2.5|1473937|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacaaatcataacattatttaaaat	CRISPR spacer
caaagaacaaatcaaaacattatttaagag	Protospacer
 ..*.********* ************.*

27. spacer 2.5|1473937|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacaaatcataacattatttaaaat	CRISPR spacer
tgcggaacaaattataacattacttaaatt	Protospacer
 * ..*******.*********.***** *

28. spacer 2.5|1473937|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacaaatcataacattatttaaaat	CRISPR spacer
tgcggaacaaattataacattacttaaatt	Protospacer
 * ..*******.*********.***** *

29. spacer 2.5|1473937|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacaaatcataacattatttaaaat	CRISPR spacer
tgcggaacaaattataacattacttaaatt	Protospacer
 * ..*******.*********.***** *

30. spacer 2.5|1473937|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aggaaaacaaatcataacattatttaaaat	CRISPR spacer
attaaaacaaataataacattattattaaa	Protospacer
*  ********* ***********   **

31. spacer 2.5|1473937|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to NC_028666 (Streptococcus phage Str-PAP-1, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacaaatcataacattatttaaaat	CRISPR spacer
tgacgaacaaatcaaaactttatttaaatt	Protospacer
 *. .********* *** ********* *

32. spacer 2.1|1473673|30|NZ_CP022470|CRISPRCasFinder,CRT matches to AP013387 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C42-MedDCM-OCT-S29-C52) position: , mismatch: 8, identity: 0.733

gctttaggaaatgctttaaaacgctttgga	CRISPR spacer
actttaggaactgctttaaaaccagttact	Protospacer
.********* ***********   **.

33. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
gctgaattatcaagttcttgtttttgagct	Protospacer
  ***.**********.********.*

34. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to NC_022994 (Geobacillus sp. 1121 plasmid pGTG5, complete sequence) position: , mismatch: 8, identity: 0.733

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
ggttcattatcatgttgttgtttttaatat	Protospacer
 .*  .****** *** ************

35. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to CP033551 (Acinetobacter nosocomialis strain 2014S01-097 plasmid p2014S01-097-1, complete sequence) position: , mismatch: 8, identity: 0.733

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
aatactttttcaagtttttgtttttaaatt	Protospacer
 **.  ** ******************

36. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to NZ_LR214943 (Mycoplasma orale strain NCTC10112 plasmid 4) position: , mismatch: 8, identity: 0.733

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
gttccattattaactttttgtttttaatat	Protospacer
  *  .****.** ***************

37. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to KY705259 (Streptococcus phage P5641, complete genome) position: , mismatch: 8, identity: 0.733

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
ggtgagttatcatctttttgtttttccaca	Protospacer
 .**********  ***********    *

38. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to NC_031024 (Bacillus phage Belinda, complete genome) position: , mismatch: 8, identity: 0.733

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
aatgagttatcatgtttttgttccttgttt	Protospacer
 *********** *********..* .*

39. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to NC_019679 (Rivularia sp. PCC 7116 plasmid pRIV7116.01, complete sequence) position: , mismatch: 8, identity: 0.733

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
agtttgaaacattaacatctttactaaccc	Protospacer
  **********.********** * *. .

40. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to NC_028925 (Enterobacteria phage vB_EcoM_VR25, complete genome) position: , mismatch: 8, identity: 0.733

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
caataataacatcaacatatttaatcattt	Protospacer
.  * . *********** ********* *

41. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 8, identity: 0.733

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
cttttgaaagttcaacatctttaacatttc	Protospacer
.********  *************.  * .

42. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 8, identity: 0.733

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
cttttgaaagttcaacatctttaacatttc	Protospacer
.********  *************.  * .

43. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 8, identity: 0.733

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
cttttgaaagttcaacatctttaacatttc	Protospacer
.********  *************.  * .

44. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 8, identity: 0.733

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
cttttgaaagttcaacatctttaacatttc	Protospacer
.********  *************.  * .

45. spacer 2.3|1473805|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 8, identity: 0.733

tttttgaaacatcaacatctttaatcatat	CRISPR spacer
cttttgaaagttcaacatctttaacatttc	Protospacer
.********  *************.  * .

46. spacer 2.5|1473937|30|NZ_CP022470|CRISPRCasFinder,CRT,PILER-CR matches to KU594606 (Cyanophage S-RIM32 isolate RW_108_0702, complete genome) position: , mismatch: 8, identity: 0.733

aggaaaacaaatcataacattatttaaaat	CRISPR spacer
tgtcgaacaaataataacattattcaaaga	Protospacer
 *  .******* ***********.***.

47. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to NC_007930 (Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence) position: , mismatch: 9, identity: 0.7

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
gctgaattatcaagttcttgtttttctgtt	Protospacer
  ***.**********.********

48. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.7

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
gctgaattatcaagttcttgtttttctgtt	Protospacer
  ***.**********.********

49. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.7

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
gctgaattatcaagttcttgtttttctgtt	Protospacer
  ***.**********.********

50. spacer 2.2|1473739|30|NZ_CP022470|CRISPRCasFinder,CRT matches to CP002037 (Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence) position: , mismatch: 9, identity: 0.7

tatgagttatcaagtttttgtttttaataa	CRISPR spacer
gctgaattatcaagttcttgtttttctgtt	Protospacer
  ***.**********.********

51. spacer 1.1|1368679|34|NZ_CP022470|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

649928 : 744106

104

Campylobacter_phage(46.15%)

transposase,tRNA,integrase,tail,capsid,terminase,plate

attL 674899:674919|attR 736779:736799

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002868040.1\|649928_650633_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002854824.1\|650643_651000_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_002852246.1\|651132_651546_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_002857190.1\|651569_652910_+	3-deoxy-7-phosphoheptulonate synthase class II	NA	NA	NA	NA
WP_002854966.1\|652906_653236_+	ArsC family transcriptional regulator	NA	NA	NA	NA
WP_002877994.1\|653673_657276_+	DNA polymerase III subunit alpha	A0A291AWR1	Streptomyces_phage	1.5e-197	37.4
WP_002866558.1\|657288_657921_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002854849.1\|657956_658706_-	flagellin	NA	NA	NA	NA
WP_002858582.1\|658743_659214_-	DUF4149 domain-containing protein	NA	NA	NA	NA
WP_002866560.1\|659226_660042_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_002877997.1\|660038_661226_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_002776553.1\|661352_661538_+	hypothetical protein	NA	NA	NA	NA
WP_002856854.1\|661534_662077_-	molybdopterin adenylyltransferase	NA	NA	NA	NA
WP_002799370.1\|662097_663081_-	magnesium/cobalt transporter CorA	NA	NA	NA	NA
WP_022552268.1\|663197_664244_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_014516982.1\|664254_665580_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_072238619.1\|665576_666386_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_002781814.1\|666382_667222_+	ABC transporter permease	NA	NA	NA	NA
WP_022552270.1\|667222_668002_+	ABC transporter permease	NA	NA	NA	NA
WP_022552271.1\|668005_668995_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.5e-35	40.4
WP_002781807.1\|668991_669630_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_002854837.1\|669653_670409_-	basic amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002878240.1\|671391_673320_+	hypothetical protein	NA	NA	NA	NA
WP_173671282.1\|673331_676010_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
674899:674919	attL	NA	NA	NA	NA
WP_168848224.1\|676103_676955_-	hypothetical protein	NA	NA	NA	NA
WP_002795438.1\|677096_677729_-	helix-turn-helix transcriptional regulator	M5A9D2	Nitratiruptor_phage	4.7e-22	43.7
WP_002834894.1\|677873_678074_+	hypothetical protein	NA	NA	NA	NA
WP_039332557.1\|678070_680146_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_011049638.1\|680215_681139_+	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.0e-09	25.3
WP_002891557.1\|681141_681345_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_011049637.1\|681328_681514_+	hypothetical protein	NA	NA	NA	NA
WP_032592032.1\|681609_681948_+	hypothetical protein	NA	NA	NA	NA
WP_039332552.1\|682056_682542_+	host-nuclease inhibitor Gam family protein	A0A2K9VGT9	Faecalibacterium_phage	7.1e-18	33.3
WP_002873716.1\|682538_682751_+	hypothetical protein	NA	NA	NA	NA
WP_002873717.1\|682814_683087_+	hypothetical protein	NA	NA	NA	NA
WP_002873718.1\|683083_683500_+	hypothetical protein	A0A1B0XVJ5	Campylobacter_phage	5.0e-12	32.5
WP_039332550.1\|683611_684574_+	AAA family ATPase	NA	NA	NA	NA
WP_002784531.1\|684570_684840_+	hypothetical protein	NA	NA	NA	NA
WP_052854361.1\|684839_685532_+	hypothetical protein	NA	NA	NA	NA
WP_039332546.1\|685528_685978_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002827134.1\|686024_686300_+	hypothetical protein	NA	NA	NA	NA
WP_052854363.1\|686291_686963_-	endonuclease	NA	NA	NA	NA
WP_002784523.1\|687056_687341_+	DNA-binding protein	NA	NA	NA	NA
WP_052782947.1\|687461_687665_+	CJH_07325 family protein	J9SI91	Campylobacter_phage	1.5e-06	48.1
WP_167844330.1\|687636_688500_+	hypothetical protein	NA	NA	NA	NA
WP_052782948.1\|688469_689447_-\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002791401.1\|689440_689632_-\|tail	tail protein X	NA	NA	NA	NA
WP_002784519.1\|689624_689999_-\|tail	phage tail protein	NA	NA	NA	NA
WP_052854367.1\|690124_691363_-	hypothetical protein	M4M9M5	Vibrio_phage	4.3e-19	29.8
WP_052783156.1\|691364_692735_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	7.6e-17	26.3
WP_002917931.1\|692744_694415_-\|terminase	phage terminase large subunit	A0A0A1IW02	Pseudomonas_phage	2.6e-91	41.2
WP_002803360.1\|694414_695014_-	DUF1804 family protein	NA	NA	NA	NA
WP_039332530.1\|695006_695465_-	DUF1320 family protein	NA	NA	NA	NA
WP_002872711.1\|695580_696558_-\|capsid	major capsid protein	R9TRN2	Rhizobium_phage	4.3e-06	23.4
WP_039332528.1\|696560_697088_-	hypothetical protein	NA	NA	NA	NA
WP_002827123.1\|697090_697906_-	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002784501.1\|697907_698342_-	hypothetical protein	NA	NA	NA	NA
WP_002878913.1\|698490_698880_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	6.5e-22	46.3
WP_002854893.1\|698890_699232_+	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|699228_699477_+	hypothetical protein	NA	NA	NA	NA
WP_002784492.1\|699588_699903_+	hypothetical protein	NA	NA	NA	NA
WP_039332519.1\|699902_700535_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	7.1e-10	35.5
WP_002795238.1\|700543_700735_+	hypothetical protein	NA	NA	NA	NA
WP_002795239.1\|700731_701022_+	GPW/gp25 family protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_039332515.1\|701018_702185_+\|plate	baseplate J/gp47 family protein	A0A1X9SH02	Bradyrhizobium_phage	1.5e-13	26.0
WP_039332513.1\|702181_702802_+\|tail	phage tail protein I	A7YGG0	Campylobacter_phage	2.5e-60	100.0
WP_039332511.1\|702801_703833_+\|tail	phage tail protein	A7YGF9	Campylobacter_phage	6.2e-189	100.0
WP_039332508.1\|703857_704364_+	DUF4376 domain-containing protein	A7YGF8	Campylobacter_phage	3.4e-87	100.0
WP_002938257.1\|704360_704732_+	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	1.5e-68	100.0
WP_039332504.1\|704831_705839_+	hypothetical protein	A7YGZ7	Campylobacter_phage	1.1e-190	99.4
WP_039332501.1\|705857_707051_+\|tail	phage tail sheath family protein	A7YGF4	Campylobacter_phage	5.0e-198	100.0
WP_002913647.1\|707077_707587_+\|tail	phage major tail tube protein	A7YGF3	Campylobacter_phage	2.5e-90	100.0
WP_002873740.1\|707739_707979_+\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	9.4e-24	93.8
WP_002865378.1\|708090_708396_-	hypothetical protein	A7YGX3	Campylobacter_phage	2.7e-39	100.0
WP_052854371.1\|708437_710654_+\|tail	phage tail tape measure protein	A7YGE8	Campylobacter_phage	0.0e+00	100.0
WP_002865380.1\|710657_711146_+	phage virion morphogenesis protein	A7YGE7	Campylobacter_phage	2.0e-89	100.0
WP_039333509.1\|711347_712163_+	DNA adenine methylase	A7YGG5	Campylobacter_phage	1.2e-150	99.3
WP_032593226.1\|712190_712478_-	hypothetical protein	A7YGE5	Campylobacter_phage	1.1e-47	100.0
WP_002843339.1\|712557_712752_-	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002865000.1\|712761_713082_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_052791646.1\|713162_713792_-	LexA family transcriptional regulator	A7YGK7	Campylobacter_phage	1.3e-59	98.2
WP_002873747.1\|714086_714287_+	hypothetical protein	NA	NA	NA	NA
WP_002866572.1\|714854_715040_+	hypothetical protein	NA	NA	NA	NA
WP_002866573.1\|715049_716738_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_002865981.1\|723127_724309_+	hypothetical protein	NA	NA	NA	NA
WP_002856966.1\|724525_725317_+	HrcA family transcriptional regulator	NA	NA	NA	NA
WP_002865982.1\|725313_725844_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_002856760.1\|725866_727738_+	molecular chaperone DnaK	A0A167RF67	Powai_lake_megavirus	6.7e-149	47.0
WP_002865984.1\|728090_729113_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002865985.1\|729182_729524_+	cupin domain-containing protein	NA	NA	NA	NA
WP_002877257.1\|729573_730743_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_002866897.1\|730915_731554_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_032595244.1\|731554_733390_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002866898.1\|733386_734613_-\|tRNA	histidine--tRNA ligase	A0A1V0SFH3	Hokovirus	4.4e-24	26.5
WP_002866899.1\|734609_735188_-	dTMP kinase	A0A1L2BX49	Bacteriophage	9.0e-12	34.3
WP_002852633.1\|735178_735655_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.5e-23	39.5
WP_002877254.1\|735694_736258_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_002866901.1\|736254_736917_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
736779:736799	attR	NA	NA	NA	NA
WP_002866902.1\|737000_737777_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002857015.1\|737786_738557_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012006685.1\|738605_739379_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004304137.1\|739570_740482_-	ABC transporter permease	NA	NA	NA	NA
WP_002893140.1\|740478_741489_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-32	38.3
WP_004304140.1\|741493_744106_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	2.4e-152	42.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022471

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP022470

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection