CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022489	Salmonella enterica subsp. enterica serovar Mbandaka strain SA20026234 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh,DinG,WYL,RT,PD-DExK	1	14	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022489_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022489_1

125522-126832

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

21 spacers

The CRISPR arrays of NZ_CP022489_1

>merge|NZ_CP022489|1|125522-126832|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTCGTTATTTACGACATTAACATTAACCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTAATGCTTTTTCGTCCGCCCATAGAAATAAGTGTTCCCCGCGCCAGCGGAGATAAACCGGTATCAAAGGTCATCAGGTGTTCGCCTTTCAGCGTGTTCCCCGCGCCAGCGGGGATAAACCAGCAGATTGGTATCTGGTACGACGACTGCCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGACTGTTAAAATGCTTCAGGACGGTGAAGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCACTGTACCGCCGACAGGACTTTTTAACGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCAGGCGCTGGACGCGCTGCACAGACAGTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCGGTCGAGGTGGCGAGGTTGATAGCAGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAATATGTTGATCGGGATTCTGGCCGCACTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTATCGCTCTGAGAGTGGCGCTCGTTACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCTGACCATGATTGCAGTCAGGGTCGGCATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGGAATGATGAAACGAATTAGTAAAAACAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATGGCATAGCCACCCCAGACAGTGGCTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACCGATCCGGGAACAACCGGAACAACGCGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTAACGCTGGCGTGATAATTTTGGTCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATACGACTGGACTGGATTTGATTCATTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGAGCCTGGAGCTCTCGACTCCTGATTTTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTAACGTCCTTTGCTGGTGTTTTTGTGTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACACCAACATTACGGCACGCAAGAGGTTATGTGTTCCCTGCGCCAGCGGGGATAAACCGGTTGGAGGGCGGTTCTGATGGCGAAACTTATCGTGTTCCCCGCGCCAGCGGGGATAAACCGTACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP022489|1|1|125522-126771|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTCGTTATTTACGACATTAACATTAACCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTAATGCTTTTTCGTCCGCCCATAGAAATAA
GTGTTCCCCGCGCCAGCGGAGATAAACCG	GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCA	GCAGATTGGTATCTGGTACGACGACTGCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACTGTACCGCCGACAGGACTTTTTAACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGCGCTGGACGCGCTGCACAGACAGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATATGTTGATCGGGATTCTGGCCGCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTGACCATGATTGCAGTCAGGGTCGGCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGAATGATGAAACGAATTAGTAAAAACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATGGCATAGCCACCCCAGACAGTGGCTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACCGATCCGGGAACAACCGGAACAACGCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTAACGCTGGCGTGATAATTTTGGTCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATACGACTGGACTGGATTTGATTCATTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACACCAACATTACGGCACGCAAGAGGTTAT
GTGTTCCCTGCGCCAGCGGGGATAAACCG	GTTGGAGGGCGGTTCTGATGGCGAAACTTATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP022489|1|1|125522-126832|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTCGTTATTTACGACATTAACATTAACCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTAATGCTTTTTCGTCCGCCCATAGAAATAA
GTGTTCCCCGCGCCAGCGGAGATAAACCG	GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCA	GCAGATTGGTATCTGGTACGACGACTGCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACTGTACCGCCGACAGGACTTTTTAACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGCGCTGGACGCGCTGCACAGACAGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATATGTTGATCGGGATTCTGGCCGCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTGACCATGATTGCAGTCAGGGTCGGCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGAATGATGAAACGAATTAGTAAAAACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATGGCATAGCCACCCCAGACAGTGGCTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACCGATCCGGGAACAACCGGAACAACGCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTAACGCTGGCGTGATAATTTTGGTCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATACGACTGGACTGGATTTGATTCATTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACACCAACATTACGGCACGCAAGAGGTTAT
GTGTTCCCTGCGCCAGCGGGGATAAACCG	GTTGGAGGGCGGTTCTGATGGCGAAACTTATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP022489|1|1|125522-126832|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTCGTTATTTACGACATTAACATTAACCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTAATGCTTTTTCGTCCGCCCATAGAAATAA
GTGTTCCCCGCGCCAGCGGAGATAAACCG	GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCA	GCAGATTGGTATCTGGTACGACGACTGCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACTGTACCGCCGACAGGACTTTTTAACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGCGCTGGACGCGCTGCACAGACAGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATATGTTGATCGGGATTCTGGCCGCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTGACCATGATTGCAGTCAGGGTCGGCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGAATGATGAAACGAATTAGTAAAAACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATGGCATAGCCACCCCAGACAGTGGCTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACCGATCCGGGAACAACCGGAACAACGCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTAACGCTGGCGTGATAATTTTGGTCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATACGACTGGACTGGATTTGATTCATTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACACCAACATTACGGCACGCAAGAGGTTAT
GTGTTCCCTGCGCCAGCGGGGATAAACCG	GTTGGAGGGCGGTTCTGATGGCGAAACTTATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022489.1\|WP_077907220.1\|116398_119098_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP022489.1\|WP_001199961.1\|124553_125225_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP022489.1\|WP_000210863.1\|121399_123037_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP022489.1\|WP_001208007.1\|126929_127727_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP022489.1\|WP_017441121.1\|115612_116386_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP022489.1\|WP_000832396.1\|114601_115072_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP022489.1\|WP_000108313.1\|127816_128179_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP022489.1\|WP_017441124.1\|130413_132126_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP022489.1\|WP_000210451.1\|120371_121172_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP022489.1\|WP_017441125.1\|132201_132936_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP022489.1\|WP_000372384.1\|138605_139514_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP022489.1\|WP_017441128.1\|139523_140963_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP022489.1\|WP_017441120.1\|115086_115593_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP022489.1\|WP_000842512.1\|119177_119765_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP022489.1\|WP_017441123.1\|128614_130414_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP022489.1\|WP_000036734.1\|123119_124418_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP022489.1\|WP_017441126.1\|133148_134102_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP022489.1\|WP_017441127.1\|137308_138355_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP022489.1\|WP_017441119.1\|114068_114605_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP022489.1\|WP_001173663.1\|140949_141555_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NZ_CP022489.1\|WP_077907220.1\|116398_119098_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP022489.1\|WP_001199961.1\|124553_125225_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP022489.1\|WP_000210863.1\|121399_123037_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP022489.1\|WP_001208007.1\|126929_127727_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	9.9681e-103
NZ_CP022489.1\|WP_017441121.1\|115612_116386_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP022489.1\|WP_000832396.1\|114601_115072_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
NZ_CP022489.1\|WP_000108313.1\|127816_128179_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP022489.1\|WP_017441124.1\|130413_132126_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP022489.1\|WP_000210451.1\|120371_121172_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP022489.1\|WP_017441125.1\|132201_132936_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.66931e-138
NZ_CP022489.1\|WP_000372384.1\|138605_139514_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP022489.1\|WP_017441128.1\|139523_140963_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP022489.1\|WP_017441120.1\|115086_115593_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.2915e-104
NZ_CP022489.1\|WP_000842512.1\|119177_119765_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP022489.1\|WP_017441123.1\|128614_130414_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP022489.1\|WP_000036734.1\|123119_124418_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP022489.1\|WP_017441126.1\|133148_134102_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP022489.1\|WP_017441127.1\|137308_138355_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP022489.1\|WP_017441119.1\|114068_114605_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	3.75281e-120
NZ_CP022489.1\|WP_001173663.1\|140949_141555_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146

>NZ_CP022489.1|WP_001199961.1|124553_125225_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP022489.1|WP_000036734.1|123119_124418_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP022489.1|WP_000210863.1|121399_123037_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP022489.1|WP_000210451.1|120371_121172_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP022489.1|WP_000842512.1|119177_119765_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP022489.1|WP_077907220.1|116398_119098_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNSYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGSGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP022489.1|WP_017441121.1|115612_116386_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKMTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP022489.1|WP_017441120.1|115086_115593_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGNNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP022489.1|WP_000832396.1|114601_115072_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP022489.1|WP_017441119.1|114068_114605_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVVVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATEGTAFVLKEGITTINLQARLQKYAGEDVMPGEFSGTATVSFEYQ
>NZ_CP022489.1|WP_001208007.1|126929_127727_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP022489.1|WP_000108313.1|127816_128179_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP022489.1|WP_017441123.1|128614_130414_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFGLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNYIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP022489.1|WP_017441124.1|130413_132126_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP022489.1|WP_017441125.1|132201_132936_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAYLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP022489.1|WP_017441126.1|133148_134102_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP022489.1|WP_017441127.1|137308_138355_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGIDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP022489.1|WP_000372384.1|138605_139514_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP022489.1|WP_017441128.1|139523_140963_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELNERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP022489.1|WP_001173663.1|140949_141555_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS

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Crispr_ID: NZ_CP022489_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022489_2

136595-137294

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

11 spacers

The CRISPR arrays of NZ_CP022489_2

>merge|NZ_CP022489|2|136595-137294|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGTGATTTTAATGATGTGCTGACTACCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTTCTACAGTAAGGTTTACAGCCTGAGCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTACGGAAATTTGTGTCAGATATTGCCGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCCACAGTTCGTCGTGAATTGCGCAGGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTCTCAATAAATTTTCCCGGCTGCCGGATCTGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGGGACCATTCCAATGGTCAGTTTCACGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACCAGAATTGCTGAAGTAAATTGCAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATATCGAACGGGTTACGGCTGTCGGTGTAACTGTGTTCCCCGCGTCAGCGGGGATAAACCGATATTTTGGCAACTCGTCGTACATTATCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCACAACGCCTGGATATCCGCCCATCGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTTTGTGGTAAATATGGAATCGATTAACCCCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP022489|2|2|136595-137293|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGGGTGATTTTAATGATGTGCTGACTACCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCGTTCTACAGTAAGGTTTACAGCCTGAGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTACGGAAATTTGTGTCAGATATTGCCGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGCCCACAGTTCGTCGTGAATTGCGCAGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTTCTCAATAAATTTTCCCGGCTGCCGGATCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTGGGACCATTCCAATGGTCAGTTTCACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAAACCAGAATTGCTGAAGTAAATTGCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATATCGAACGGGTTACGGCTGTCGGTGTAACT
GTGTTCCCCGCGTCAGCGGGGATAAACC	GATATTTTGGCAACTCGTCGTACATTATCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCTTTGTGGTAAATATGGAATCGATTAACCCC
GTGTTCCCCGCGCCAGCGGGGATAAACA

>NZ_CP022489|2|2|136595-137294|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGTGATTTTAATGATGTGCTGACTACCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACGGAAATTTGTGTCAGATATTGCCGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCCACAGTTCGTCGTGAATTGCGCAGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCTCAATAAATTTTCCCGGCTGCCGGATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGGGACCATTCCAATGGTCAGTTTCACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACCAGAATTGCTGAAGTAAATTGCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATCGAACGGGTTACGGCTGTCGGTGTAACT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATATTTTGGCAACTCGTCGTACATTATCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTGTGGTAAATATGGAATCGATTAACCCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP022489|2|2|136595-137294|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGTGATTTTAATGATGTGCTGACTACCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACGGAAATTTGTGTCAGATATTGCCGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCCACAGTTCGTCGTGAATTGCGCAGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCTCAATAAATTTTCCCGGCTGCCGGATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGGGACCATTCCAATGGTCAGTTTCACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACCAGAATTGCTGAAGTAAATTGCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATCGAACGGGTTACGGCTGTCGGTGTAACT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATATTTTGGCAACTCGTCGTACATTATCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTGTGGTAAATATGGAATCGATTAACCCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022489.1\|WP_001219244.1\|143159_143639_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP022489.1\|WP_001199961.1\|124553_125225_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP022489.1\|WP_000210863.1\|121399_123037_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP022489.1\|WP_001208007.1\|126929_127727_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP022489.1\|WP_000036734.1\|123119_124418_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP022489.1\|WP_000108313.1\|127816_128179_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP022489.1\|WP_001118109.1\|141572_141929_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP022489.1\|WP_000741649.1\|142449_143160_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP022489.1\|WP_001221537.1\|144665_145427_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP022489.1\|WP_017441124.1\|130413_132126_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP022489.1\|WP_000210451.1\|120371_121172_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP022489.1\|WP_017441125.1\|132201_132936_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP022489.1\|WP_000134246.1\|143635_144685_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP022489.1\|WP_000372384.1\|138605_139514_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP022489.1\|WP_017441128.1\|139523_140963_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP022489.1\|WP_017441123.1\|128614_130414_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP022489.1\|WP_017441126.1\|133148_134102_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP022489.1\|WP_017441127.1\|137308_138355_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP022489.1\|WP_000517480.1\|142119_142431_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP022489.1\|WP_001173663.1\|140949_141555_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NZ_CP022489.1\|WP_001219244.1\|143159_143639_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP022489.1\|WP_001199961.1\|124553_125225_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP022489.1\|WP_000210863.1\|121399_123037_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP022489.1\|WP_001208007.1\|126929_127727_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	9.9681e-103
NZ_CP022489.1\|WP_000036734.1\|123119_124418_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP022489.1\|WP_000108313.1\|127816_128179_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP022489.1\|WP_001118109.1\|141572_141929_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP022489.1\|WP_000741649.1\|142449_143160_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_CP022489.1\|WP_001221537.1\|144665_145427_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NZ_CP022489.1\|WP_017441124.1\|130413_132126_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP022489.1\|WP_000210451.1\|120371_121172_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP022489.1\|WP_017441125.1\|132201_132936_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.66931e-138
NZ_CP022489.1\|WP_000134246.1\|143635_144685_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP022489.1\|WP_000372384.1\|138605_139514_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP022489.1\|WP_017441128.1\|139523_140963_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP022489.1\|WP_017441123.1\|128614_130414_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP022489.1\|WP_017441126.1\|133148_134102_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP022489.1\|WP_017441127.1\|137308_138355_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP022489.1\|WP_000517480.1\|142119_142431_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP022489.1\|WP_001173663.1\|140949_141555_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146

>NZ_CP022489.1|WP_017441126.1|133148_134102_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP022489.1|WP_017441125.1|132201_132936_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAYLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP022489.1|WP_017441124.1|130413_132126_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP022489.1|WP_017441123.1|128614_130414_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFGLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNYIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP022489.1|WP_000108313.1|127816_128179_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP022489.1|WP_001208007.1|126929_127727_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP022489.1|WP_001199961.1|124553_125225_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP022489.1|WP_000036734.1|123119_124418_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP022489.1|WP_000210863.1|121399_123037_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP022489.1|WP_000210451.1|120371_121172_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP022489.1|WP_017441127.1|137308_138355_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGIDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP022489.1|WP_000372384.1|138605_139514_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP022489.1|WP_017441128.1|139523_140963_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELNERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP022489.1|WP_001173663.1|140949_141555_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP022489.1|WP_001118109.1|141572_141929_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP022489.1|WP_000517480.1|142119_142431_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP022489.1|WP_000741649.1|142449_143160_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP022489.1|WP_001219244.1|143159_143639_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP022489.1|WP_000134246.1|143635_144685_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP022489.1|WP_001221537.1|144665_145427_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: NZ_CP022489_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022489_3

649653-649759

Orphan

Consensus_repeat	Method
ATTGTCCAACGGTTGTCCAACAGTTGTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022489_3

>merge|NZ_CP022489|3|649653-649759|CRISPRCasFinder
TCAGGCAAAAAATTGTCCAACGGTTGTCCAACAGTTGTCCAACGCAAACACCAGTAATGGTGCGGCTCTCAGCGGAGATTGTCCAACGGTTGTCCAACAGTTGTCCA

>NZ_CP022489|3|3|649653-649759|CRISPRCasFinder
TCAGGCAAAAAATTGTCCAACGGTTGTCCA	ACAGTTGTCCAACGCAAACACCAGTAATGGTGCGGCTCTCAGCGGAG
ATTGTCCAACGGTTGTCCAACAGTTGTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022489.1\|WP_052942523.1\|643768_644476_-\|recombinase	unknown	unknown	gnl\|CDD\|227056
NZ_CP022489.1\|WP_000512805.1\|654845_655364_+\|DUF1133-family-protein	unknown	unknown	gnl\|CDD\|368957
NZ_CP022489.1\|WP_000736903.1\|651872_652313_+\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_CP022489.1\|WP_000233125.1\|647305_647674_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022489.1\|WP_043856230.1\|648514_648709_+\|Cro/Cl-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|370262
NZ_CP022489.1\|WP_001308813.1\|644730_645006_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022489.1\|WP_043856231.1\|650158_651595_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP022489.1\|WP_001028837.1\|654183_654855_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277367
NZ_CP022489.1\|WP_000153280.1\|652309_652837_+\|phage-N-6-adenine-methyltransferase	unknown	unknown	gnl\|CDD\|273769
NZ_CP022489.1\|WP_072043886.1\|646424_646730_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022489.1\|WP_000392424.1\|645644_646094_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022489.1\|WP_001108028.1\|653575_654187_+\|recombination-protein-NinG	unknown	unknown	gnl\|CDD\|368603
NZ_CP022489.1\|WP_023242793.1\|645095_645566_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022489.1\|WP_080182531.1\|653406_653583_+\|protein-ninF	unknown	unknown	gnl\|CDD\|283468
NZ_CP022489.1\|WP_000924597.1\|653012_653414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022489.1\|WP_000783734.1\|655872_656196_+\|phage-holin,-lambda-family	unknown	unknown	gnl\|CDD\|273709
NZ_CP022489.1\|WP_080182530.1\|652833_653010_+\|NinE-family-protein	unknown	unknown	gnl\|CDD\|283078
NZ_CP022489.1\|WP_001253476.1\|643484_643769_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|369791
NZ_CP022489.1\|WP_000428318.1\|647691_648408_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP022489.1\|WP_015966855.1\|648817_649096_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|336083

Protein	Function_ID	Function_description	E-value
NZ_CP022489.1\|WP_052942523.1\|643768_644476_-\|recombinase	gnl\|CDD\|227056	COG4712, COG4712, Uncharacterized protein conserved in bacteria [Function unknown].	3.67756e-42
NZ_CP022489.1\|WP_000512805.1\|654845_655364_+\|DUF1133-family-protein	gnl\|CDD\|368957	pfam06530, Phage_antitermQ, Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.	2.15883e-26
NZ_CP022489.1\|WP_043856231.1\|650158_651595_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NZ_CP022489.1\|WP_043856230.1\|648514_648709_+\|Cro/Cl-family-transcriptional-regulator	gnl\|CDD\|370262	pfam09048, Cro, Cro. Members of this family are involved in the repression of transcription by binding as a homodimer to palindromic DNA operator sites in phage lambda: they repress genes expressed in early phage development and are necessary for the late stage of lytic growth. These proteins have a secondary structure consisting of three alpha-helices and three beta-sheets, and dimerize through interactions between the two antiparallel beta-strands.	9.46505e-26
NZ_CP022489.1\|WP_001028837.1\|654183_654855_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|277367	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.56246e-113
NZ_CP022489.1\|WP_000153280.1\|652309_652837_+\|phage-N-6-adenine-methyltransferase	gnl\|CDD\|273769	TIGR01712, DNA_N-6-adenine-methyltransferase_M.T1, phage N-6-adenine-methyltransferase. This model is a fragment-mode model for a phage-borne DNA N-6-adenine-methyltransferase. [Mobile and extrachromosomal element functions, Prophage functions, DNA metabolism, Restriction/modification].	3.12394e-86
NZ_CP022489.1\|WP_001108028.1\|653575_654187_+\|recombination-protein-NinG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	9.59199e-90
NZ_CP022489.1\|WP_000783734.1\|655872_656196_+\|phage-holin,-lambda-family	gnl\|CDD\|273709	TIGR01594, Uncharacterized_protein_HI_1416, phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda. [Mobile and extrachromosomal element functions, Prophage functions].	6.35204e-40
NZ_CP022489.1\|WP_000736903.1\|651872_652313_+\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	1.36744e-58
NZ_CP022489.1\|WP_080182531.1\|653406_653583_+\|protein-ninF	gnl\|CDD\|283468	pfam05810, NinF, NinF protein. This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.	1.07563e-20
NZ_CP022489.1\|WP_080182530.1\|652833_653010_+\|NinE-family-protein	gnl\|CDD\|283078	pfam05322, NinE, NINE Protein. This family consists of NINE proteins from several bacteriophages and from E. coli.	2.33157e-23
NZ_CP022489.1\|WP_001253476.1\|643484_643769_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|369791	pfam08281, Sigma70_r4_2, Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.	0.00115817
NZ_CP022489.1\|WP_000428318.1\|647691_648408_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	2.95923e-31
NZ_CP022489.1\|WP_015966855.1\|648817_649096_+\|ABC-transporter	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	9.59289e-37

>NZ_CP022489.1|WP_015966855.1|648817_649096_+|ABC-transporter
MQLTSTRKKANAITSNILNRIAVRGQRKVADALGINESQISRWKDSFIPKMAMLLAVLEWGVEDEELAELAKKVARMLTKEKAPKNGEFFEA
>NZ_CP022489.1|WP_043856230.1|648514_648709_+|Cro/Cl-family-transcriptional-regulator
MIRMTLADYAKTHGQAKAASDFGVIQCAISKAILAGRNIMVTVKPDGSVIGEEVRPFPSNKKNK
>NZ_CP022489.1|WP_000428318.1|647691_648408_-|helix-turn-helix-domain-containing-protein
MENKKSLTTEQLEDAKRLKALYESKKKELGITQYSIADELGITQGAVGHYLNGRNALNVEVASGFARLLQVSIADFSQSIAAKVAEQAESLKSDANVRYAGEYRAGKRYPVLSSIQAGSWCEACEPYTIKDIDVWLESDAHIQGNAFWLKVEGDSMTAPVGLSIPEGTFVLFDTGREAINGSLVIAKLSDSNEATFKKLIIDGGNKYLKGLNPAWPLVPINGNCKIIGVAIETKLRLV
>NZ_CP022489.1|WP_000233125.1|647305_647674_-|hypothetical-protein
MVGTAIASFFGMLAISTIYGLAHAFIAKSLSEKISQAWAHRSARFMILVIIAIQGISAFILYGSSLYLLYQGATFTPYTSDYGTLYDGSEDISMAWIVFGLSMAVSVVADIIKVILVLTFAD
>NZ_CP022489.1|WP_072043886.1|646424_646730_-|hypothetical-protein
MTVVITYLADDNARNRRRARRQAQREQAMQEQRLARKIALKLSGCVRADKAASLGSLRCKKSEEVERKQNRIYYRKPRSEMGVTCSGRQKQRGKSIPAYYD
>NZ_CP022489.1|WP_000392424.1|645644_646094_-|hypothetical-protein
MEEQANKILVELLQKASNGIDAAVSFSQAQIPDVVHQLLLWNMVDSLIKTLIAILTIPLVFWFMKKQCQRVETGKIGDEGYSWERGNPKYRPTMVWDSKGDINLLIMPLVGVLTLWGIFIIGVVTNMTWLKIWLAPKLYLIEYAASLVK
>NZ_CP022489.1|WP_023242793.1|645095_645566_-|hypothetical-protein
MTKSWSVPFPESETEHDGMPVFWRFQATVEEDGIKIFALQYIAFHQTEHYAWLVPAHWIVNFKPAPNKWLQEWKQKRNRYAIKKVAKNAERSFAFPTKKLAIESLLRRKKYHLMRIKQDLAVVSTLVDGMKNIDTSTPDIEYNFGHNQETENWVFY
>NZ_CP022489.1|WP_001308813.1|644730_645006_-|hypothetical-protein
MEIFFALQCEGLFICIPITLHSRRFRYAIKQKEHPMQQFAIAGAASVRPFNPILSVQHSRKNILTGADFKQPRMKSLLEKLWDILKQQGRP
>NZ_CP022489.1|WP_052942523.1|643768_644476_-|recombinase
MDLNKFDEPFSPEDIEWRIQQSGKTRDGKVWAMVLAYVTNRAIMKRLDDVCGKAGWRNEYRDIPNNGGVECGISIKIDSEWVTKWDAAENTQVEAVKGGRSGAMKRAAVQWGIGRYLYNLEEGFAQTSLDKKQGWHRAKLKDGTGFYWLPPSLPNWAMPASGNQPSPENTNQKSPSVDCEQILKDFSDYASKETDKKKLIERYQHDWQLLAGNEEAQDKCVQVMNIRINELKQVA
>NZ_CP022489.1|WP_001253476.1|643484_643769_-|sigma-70-family-RNA-polymerase-sigma-factor
MRRLNITPAEMESVCGRMVACRAAEHLGLNINQFYYIAKKLSLKTAFVKPRWSDDEDKRMQTLISSGYTQRNVAKILGRSEESVKSRLSRLRKK
>NZ_CP022489.1|WP_043856231.1|650158_651595_+|AAA-family-ATPase
MTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVDGLTLFDELERKSLTVSVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQSIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGEQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSLEMPSDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRLSEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGNTGTVYCIQANGAIYDTDQQSAEMRRREREEPQSKKKGGF
>NZ_CP022489.1|WP_000736903.1|651872_652313_+|recombination-protein-NinB
MKKLTFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAALKQQDVVPNLAGNGFVVIGQSTSRMRVGEFAELLELIQAFGTERGVKWSDEARLALEWKARWGDRAA
>NZ_CP022489.1|WP_000153280.1|652309_652837_+|phage-N-6-adenine-methyltransferase
MTIKSNTPAHDKDCWQTPLWLFDALDIEFGFWLDSAASDKNALCAHWLTEADDALNSEWVSHGAIWNNPPYSNIRPWVEKAAEQCIQQRQTVVMLVPEDMSVGWFSKALESVDEVRIITDGRINFIEPSTGLEKKGNSKGSMLLIWRPFISPRRMFTTVSKAALMAIGQGVRRAA
>NZ_CP022489.1|WP_080182530.1|652833_653010_+|NinE-family-protein
MRRQRRSITDIICENCNYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRHRARK
>NZ_CP022489.1|WP_000924597.1|653012_653414_+|hypothetical-protein
MLLIQPGFGLSIKKGHMFGEKESQRKMVSIRLPFISIYWLNREATNYWYTCARAAFNDPDWFIENHHAVRQAKRKSTITKMKAYRDAWEEHRNRYQKDIEKLKSENTEIKRRLGEAKRDIDAYKRLVGGDSHA
>NZ_CP022489.1|WP_080182531.1|653406_653583_+|protein-ninF
MLSPTQIMQYQKESVDRALTCANCGQKLHVLEVHVCSDCCAELMSDPNSSMYEEEDDG
>NZ_CP022489.1|WP_001108028.1|653575_654187_+|recombination-protein-NinG
MAKPARRRCKNDECREWFHPAFANQWWCSPECGTKIALERRSKEREKAEKAAEKKRRREDQKQKDKLKIRKLALKPRSYWIKQAQQAVNAFIRERDRDLPCISCGTLTSAQWDAGHYRTTAAAPQLRFDERNIHKQCVVCNQHKSGNLVPYRVELINRIGQEAVDEIESNHNRHRWTVEECRTIKAEYQQKLKKLRNSRSEAA
>NZ_CP022489.1|WP_001028837.1|654183_654855_+|serine/threonine-protein-phosphatase
MNIYERIDGSKYRNIWVAGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGNHEHMMIDGLSERGNVNHWLLNGGVWFFNLDYDKEILAKALAHKAEELPLIIELVSKGKKYVICHADYPCDEYEFGKPVDHQQVIWNRERISNSQDGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGEGAWA
>NZ_CP022489.1|WP_000512805.1|654845_655364_+|DUF1133-family-protein
MGIRELNLTKEQHEWLNGWLELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMCIDKKAFGILLSYYAHGSSKRAIASYYHATAKPRKMCGRGGEGWRKPSLATCRNEIDDILKASLFVLYQPMQNAFKMRKRVEKVKHVAVKSLDMQLSI
>NZ_CP022489.1|WP_000783734.1|655872_656196_+|phage-holin,-lambda-family
MKMPEKHDLLAAILAAKEQGIGAILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFIRDLLDFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKKAGVEDGGNQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP022489_1	1.4\|125735\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125735-125766	32	NZ_CP022489.1	624790-624821	1	0.969

1. spacer 1.4|125735|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to position: 624790-624821, mismatch: 1, identity: 0.969

gcagattggtatctggtacgacgactgccgcc	CRISPR spacer
gcagattggtatccggtacgacgactgccgcc	Protospacer
*************.******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022489_2	2.10\|137172\|33\|NZ_CP022489\|PILER-CR	137172-137204	33	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35344-35376	0	1.0
NZ_CP022489_2	2.21\|137173\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	137173-137204	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35345-35376	0	1.0
NZ_CP022489_3	3.1\|649683\|47\|NZ_CP022489\|CRISPRCasFinder	649683-649729	47	NC_019769	Enterobacteria phage HK542, complete genome	29169-29215	0	1.0
NZ_CP022489_2	2.10\|137172\|33\|NZ_CP022489\|PILER-CR	137172-137204	33	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95163-95195	1	0.97
NZ_CP022489_2	2.10\|137172\|33\|NZ_CP022489\|PILER-CR	137172-137204	33	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9402-9434	1	0.97
NZ_CP022489_2	2.10\|137172\|33\|NZ_CP022489\|PILER-CR	137172-137204	33	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39769	1	0.97
NZ_CP022489_2	2.10\|137172\|33\|NZ_CP022489\|PILER-CR	137172-137204	33	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113375-113407	1	0.97
NZ_CP022489_2	2.21\|137173\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	137173-137204	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95164-95195	1	0.969
NZ_CP022489_2	2.21\|137173\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	137173-137204	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9403-9434	1	0.969
NZ_CP022489_2	2.21\|137173\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	137173-137204	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39768	1	0.969
NZ_CP022489_2	2.21\|137173\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	137173-137204	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113376-113407	1	0.969
NZ_CP022489_3	3.1\|649683\|47\|NZ_CP022489\|CRISPRCasFinder	649683-649729	47	KY979108	Escherichia phage ECP1, complete genome	421-467	1	0.979
NZ_CP022489_3	3.1\|649683\|47\|NZ_CP022489\|CRISPRCasFinder	649683-649729	47	NC_016160	Escherichia phage HK75, complete genome	28586-28632	2	0.957
NZ_CP022489_3	3.1\|649683\|47\|NZ_CP022489\|CRISPRCasFinder	649683-649729	47	NC_019705	Enterobacteria phage mEpX2, complete genome	29040-29086	2	0.957
NZ_CP022489_3	3.1\|649683\|47\|NZ_CP022489\|CRISPRCasFinder	649683-649729	47	NC_019719	Enterobacteria phage HK633, complete genome	31734-31780	2	0.957
NZ_CP022489_3	3.1\|649683\|47\|NZ_CP022489\|CRISPRCasFinder	649683-649729	47	JF974339	Enterobacteria phage IME10, complete genome	9717-9763	2	0.957
NZ_CP022489_3	3.1\|649683\|47\|NZ_CP022489\|CRISPRCasFinder	649683-649729	47	NC_005344	Enterobacteria phage Sf6, complete genome	28404-28450	3	0.936
NZ_CP022489_1	1.11\|126162\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126162-126193	32	NZ_CP009113	Rhodococcus opacus strain 1CP plasmid pR1CP2, complete sequence	57554-57585	6	0.812
NZ_CP022489_2	2.21\|137173\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	137173-137204	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	270963-270994	7	0.781
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	189898-189929	8	0.75
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	189898-189929	8	0.75
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1789627-1789658	8	0.75
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1806317-1806348	8	0.75
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	51148-51179	8	0.75
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	212687-212718	8	0.75
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NC_017805	Deinococcus gobiensis I-0 plasmid P1, complete sequence	382523-382554	8	0.75
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	212685-212716	8	0.75
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1769551-1769582	8	0.75
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	MN536027	Pseudomonas phage vB_Pae-SS2019XII, complete genome	14176-14207	8	0.75
NZ_CP022489_1	1.19\|126650\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126650-126681	32	MH622910	Caudovirales sp. isolate ctdb_3, complete genome	4473-4504	8	0.75
NZ_CP022489_1	1.5\|125796\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125796-125827	32	NZ_CP014361	Methylomonas sp. DH-1 plasmid, complete sequence	141473-141504	9	0.719
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_CP049908	Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence	276209-276240	9	0.719
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_CP013436	Burkholderia latens strain AU17928 isolate AU17928 plasmid pAU17928, complete sequence	20088-20119	9	0.719
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_CP049813	Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence	69714-69745	9	0.719
NZ_CP022489_1	1.11\|126162\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126162-126193	32	MN096355	Mycobacterium phage Purky, complete genome	25716-25747	9	0.719
NZ_CP022489_1	1.12\|126223\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126223-126254	32	MN694197	Marine virus AFVG_250M303, complete genome	6755-6786	9	0.719
NZ_CP022489_2	2.7\|136989\|33\|NZ_CP022489\|PILER-CR	136989-137021	33	NZ_CP021643	Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence	63579-63611	9	0.727
NZ_CP022489_2	2.13\|136685\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	136685-136716	32	AP018321	Nostoc sp. HK-01 plasmid plasmid3 DNA, complete genome	46531-46562	9	0.719
NZ_CP022489_2	2.18\|136990\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	136990-137021	32	NZ_CP021643	Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence	63580-63611	9	0.719
NZ_CP022489_2	2.18\|136990\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	136990-137021	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2378875-2378906	9	0.719
NZ_CP022489_1	1.7\|125918\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	125918-125949	32	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	171558-171589	10	0.688
NZ_CP022489_1	1.12\|126223\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126223-126254	32	KX119175	Helicobacter phage Pt22899G, complete genome	5088-5119	10	0.688
NZ_CP022489_1	1.12\|126223\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126223-126254	32	KX119175	Helicobacter phage Pt22899G, complete genome	16950-16981	10	0.688
NZ_CP022489_1	1.12\|126223\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126223-126254	32	JF734911	Helicobacter phage phiHP33, complete genome	19807-19838	10	0.688
NZ_CP022489_1	1.12\|126223\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126223-126254	32	KX119200	Helicobacter phage FrMEG235U, complete genome	14594-14625	10	0.688
NZ_CP022489_1	1.12\|126223\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126223-126254	32	KX119200	Helicobacter phage FrMEG235U, complete genome	19690-19721	10	0.688
NZ_CP022489_1	1.12\|126223\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126223-126254	32	KX119201	Helicobacter phage FrANT170U, complete genome	14594-14625	10	0.688
NZ_CP022489_1	1.12\|126223\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126223-126254	32	KX119201	Helicobacter phage FrANT170U, complete genome	19690-19721	10	0.688
NZ_CP022489_1	1.12\|126223\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126223-126254	32	KX119179	Helicobacter phage Pt5303G mobile element protein and transposase genes, complete cds	1261-1292	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP031899	Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence	76272-76303	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_KM085450	Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence	141990-142021	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP009107	Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence	141989-142020	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP028382	Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence	155197-155228	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP027343	Escherichia coli strain 2014C-4587 plasmid unnamed, complete sequence	103401-103432	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP027311	Escherichia coli strain 2014C-4135 plasmid unnamed, complete sequence	50904-50935	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP027441	Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence	97903-97934	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP027585	Escherichia coli strain 00-3076 plasmid unnamed, complete sequence	13352-13383	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP027370	Escherichia coli strain 2014C-3307 plasmid unnamed2	109572-109603	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP027453	Escherichia coli strain 2014C-3338 plasmid unnamed, complete sequence	79387-79418	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP027451	Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence	10648-10679	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP027372	Escherichia coli strain 2015C-3905 plasmid unnamed	102888-102919	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP028121	Escherichia coli O43 str. RM10042 plasmid pRM10042-2, complete sequence	49990-50021	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NC_007365	Escherichia coli EH41 plasmid pO113, complete sequence	160071-160102	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP023542	Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence	141994-142025	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP010192	Escherichia coli strain M8 plasmid A, complete genome	74522-74553	10	0.688
NZ_CP022489_1	1.14\|126345\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126345-126376	32	NZ_CP023164	Escherichia coli O22:H8 strain RM10809-3 plasmid pRM10809-3, complete sequence	35202-35233	10	0.688
NZ_CP022489_1	1.19\|126650\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126650-126681	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1409535-1409566	10	0.688
NZ_CP022489_2	2.7\|136989\|33\|NZ_CP022489\|PILER-CR	136989-137021	33	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2378874-2378906	10	0.697
NZ_CP022489_2	2.13\|136685\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	136685-136716	32	MG592456	Vibrio phage 1.081.O._10N.286.52.C2, partial genome	229928-229959	10	0.688
NZ_CP022489_2	2.19\|137051\|32\|NZ_CP022489\|CRISPRCasFinder,CRT	137051-137082	32	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	318607-318638	10	0.688
NZ_CP022489_1	1.15\|126406\|32\|NZ_CP022489\|PILER-CR,CRISPRCasFinder,CRT	126406-126437	32	NZ_CP015094	Pelagibaca abyssi strain JLT2014 plasmid pPABY6, complete sequence	53594-53625	11	0.656

1. spacer 2.10|137172|33|NZ_CP022489|PILER-CR matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

gtcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
gtcgcacaacgcctggatatccgcccatcggcc	Protospacer
*********************************

2. spacer 2.21|137173|32|NZ_CP022489|CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

3. spacer 3.1|649683|47|NZ_CP022489|CRISPRCasFinder matches to NC_019769 (Enterobacteria phage HK542, complete genome) position: , mismatch: 0, identity: 1.0

acagttgtccaacgcaaacaccagtaatggtgcggctctcagcggag	CRISPR spacer
acagttgtccaacgcaaacaccagtaatggtgcggctctcagcggag	Protospacer
***********************************************

4. spacer 2.10|137172|33|NZ_CP022489|PILER-CR matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.97

gtcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
gtcgcacaacgcctggatattcgcccatcggcc	Protospacer
********************.************

5. spacer 2.10|137172|33|NZ_CP022489|PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.97

gtcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
gtcgcacaacgcctggatattcgcccatcggcc	Protospacer
********************.************

6. spacer 2.10|137172|33|NZ_CP022489|PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.97

gtcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
gtcgcacaacgcctggatattcgcccatcggcc	Protospacer
********************.************

7. spacer 2.10|137172|33|NZ_CP022489|PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.97

gtcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
gtcgcacaacgcctggatattcgcccatcggcc	Protospacer
********************.************

8. spacer 2.21|137173|32|NZ_CP022489|CRISPRCasFinder,CRT matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

9. spacer 2.21|137173|32|NZ_CP022489|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

10. spacer 2.21|137173|32|NZ_CP022489|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

11. spacer 2.21|137173|32|NZ_CP022489|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

12. spacer 3.1|649683|47|NZ_CP022489|CRISPRCasFinder matches to KY979108 (Escherichia phage ECP1, complete genome) position: , mismatch: 1, identity: 0.979

acagttgtccaacgcaaacaccagtaatggtgcggctctcagcggag	CRISPR spacer
acagttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
******************************.****************

13. spacer 3.1|649683|47|NZ_CP022489|CRISPRCasFinder matches to NC_016160 (Escherichia phage HK75, complete genome) position: , mismatch: 2, identity: 0.957

acagttgtccaacgcaaacaccagtaatggtgcggctctcagcggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
**.***************************.****************

14. spacer 3.1|649683|47|NZ_CP022489|CRISPRCasFinder matches to NC_019705 (Enterobacteria phage mEpX2, complete genome) position: , mismatch: 2, identity: 0.957

acagttgtccaacgcaaacaccagtaatggtgcggctctcagcggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
**.***************************.****************

15. spacer 3.1|649683|47|NZ_CP022489|CRISPRCasFinder matches to NC_019719 (Enterobacteria phage HK633, complete genome) position: , mismatch: 2, identity: 0.957

acagttgtccaacgcaaacaccagtaatggtgcggctctcagcggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
**.***************************.****************

16. spacer 3.1|649683|47|NZ_CP022489|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 2, identity: 0.957

acagttgtccaacgcaaacaccagtaatggtgcggctctcagcggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
**.***************************.****************

17. spacer 3.1|649683|47|NZ_CP022489|CRISPRCasFinder matches to NC_005344 (Enterobacteria phage Sf6, complete genome) position: , mismatch: 3, identity: 0.936

acagttgtccaacgcaaacaccagtaatggtgcggctctcagcggag	CRISPR spacer
acgtttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
**. **************************.****************

18. spacer 1.11|126162|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009113 (Rhodococcus opacus strain 1CP plasmid pR1CP2, complete sequence) position: , mismatch: 6, identity: 0.812

gcgctgaccatgattgcagtcagg--gtcggcat	CRISPR spacer
tcgctgaccatgattgcagccgggtcgtcggg--	Protospacer
 ******************.*.**  *****

19. spacer 2.21|137173|32|NZ_CP022489|CRISPRCasFinder,CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** *

20. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc--	CRISPR spacer
cgcgggcgctcgacgcgctgcac--gtggccctg	Protospacer
***.****** ************  ...*.**

21. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc--	CRISPR spacer
cgcgggcgctcgacgcgctgcac--gtggccctg	Protospacer
***.****** ************  ...*.**

22. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

23. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

24. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc--	CRISPR spacer
cgcgggcgctcgacgcgctgcac--gtggccctg	Protospacer
***.****** ************  ...*.**

25. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

26. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc----	CRISPR spacer
cgcaggcgctggccgagctgc----acgatccagag	Protospacer
************ ** *****    **..***

27. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

28. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

29. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to MN536027 (Pseudomonas phage vB_Pae-SS2019XII, complete genome) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
tccaggcgctggaggcgctgcgcagcaagagc	Protospacer
. *********** *******.***  **  *

30. spacer 1.19|126650|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to MH622910 (Caudovirales sp. isolate ctdb_3, complete genome) position: , mismatch: 8, identity: 0.75

---aaacaccaacattacggcacgcaagaggttat	CRISPR spacer
ttcaagcgtcag---tacggcacgcaagaagttat	Protospacer
   **.*..**.   **************.*****

31. spacer 1.5|125796|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014361 (Methylomonas sp. DH-1 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

actgttaaaatgcttcaggacggtgaagtaaa	CRISPR spacer
caagcgaaaatgcttcaggatggtgaaatatg	Protospacer
   *. **************.******.** .

32. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049908 (Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcgggcgctggacgcgccgcacaagaccttt	Protospacer
***.**************.*****..   *..

33. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013436 (Burkholderia latens strain AU17928 isolate AU17928 plasmid pAU17928, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcaggcgctggagacgctgcacgatcgaaca	Protospacer
************* .********.. *.. *

34. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049813 (Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
tgcaggccctgaacgcgctgcacatctatcac	Protospacer
.****** ***.************  .* . *

35. spacer 1.11|126162|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to MN096355 (Mycobacterium phage Purky, complete genome) position: , mismatch: 9, identity: 0.719

gcgctgaccatgattgcagtcagggtcggcat	CRISPR spacer
ctggctgccatgatcgcagtcatggtcggcct	Protospacer
 .* . .*******.******* ******* *

36. spacer 1.12|126223|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to MN694197 (Marine virus AFVG_250M303, complete genome) position: , mismatch: 9, identity: 0.719

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
aatagggaatgaaacgtattagtaaaaacaaa	Protospacer
.. ... .******** ***************

37. spacer 2.7|136989|33|NZ_CP022489|PILER-CR matches to NZ_CP021643 (Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence) position: , mismatch: 9, identity: 0.727

gaaaccagaattgctgaagtaaattgcaaaaga	CRISPR spacer
gaaacaagatttgctgaagtaaatttagcattt	Protospacer
***** *** ***************  . *

38. spacer 2.13|136685|32|NZ_CP022489|CRISPRCasFinder,CRT matches to AP018321 (Nostoc sp. HK-01 plasmid plasmid3 DNA, complete genome) position: , mismatch: 9, identity: 0.719

gcgttctacagtaaggtttacagcctgagcaa	CRISPR spacer
tgcctattcagtaagggttacagccttagcat	Protospacer
   .* * ******** ********* ****

39. spacer 2.18|136990|32|NZ_CP022489|CRISPRCasFinder,CRT matches to NZ_CP021643 (Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence) position: , mismatch: 9, identity: 0.719

aaaccagaattgctgaagtaaattgcaaaaga	CRISPR spacer
aaacaagatttgctgaagtaaatttagcattt	Protospacer
**** *** ***************  . *

40. spacer 2.18|136990|32|NZ_CP022489|CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaccagaattgctgaagtaaattgcaaaaga	CRISPR spacer
acgggcgaattgctgaaggaaatcgcaaaaat	Protospacer
* .   ************ ****.******.

41. spacer 1.7|125918|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
gtcaggcgctgcacgccctgcacagccgcgag	Protospacer
  ********* **** ******** *.

42. spacer 1.12|126223|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to KX119175 (Helicobacter phage Pt22899G, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

43. spacer 1.12|126223|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to KX119175 (Helicobacter phage Pt22899G, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

44. spacer 1.12|126223|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to JF734911 (Helicobacter phage phiHP33, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

45. spacer 1.12|126223|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to KX119200 (Helicobacter phage FrMEG235U, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

46. spacer 1.12|126223|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to KX119200 (Helicobacter phage FrMEG235U, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

47. spacer 1.12|126223|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to KX119201 (Helicobacter phage FrANT170U, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

48. spacer 1.12|126223|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to KX119201 (Helicobacter phage FrANT170U, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

49. spacer 1.12|126223|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to KX119179 (Helicobacter phage Pt5303G mobile element protein and transposase genes, complete cds) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

50. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031899 (Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

51. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM085450 (Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

52. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009107 (Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

53. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028382 (Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

54. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027343 (Escherichia coli strain 2014C-4587 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

55. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027311 (Escherichia coli strain 2014C-4135 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

56. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027441 (Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

57. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027585 (Escherichia coli strain 00-3076 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

58. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027370 (Escherichia coli strain 2014C-3307 plasmid unnamed2) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

59. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027453 (Escherichia coli strain 2014C-3338 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

60. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027451 (Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

61. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027372 (Escherichia coli strain 2015C-3905 plasmid unnamed) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

62. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028121 (Escherichia coli O43 str. RM10042 plasmid pRM10042-2, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

63. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NC_007365 (Escherichia coli EH41 plasmid pO113, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

64. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023542 (Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

65. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010192 (Escherichia coli strain M8 plasmid A, complete genome) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

66. spacer 1.14|126345|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023164 (Escherichia coli O22:H8 strain RM10809-3 plasmid pRM10809-3, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

67. spacer 1.19|126650|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaacaccaacattacggcacgcaagaggttat	CRISPR spacer
gctcaccgacattacggcgcgcaagaaggcgg	Protospacer
.  ****.**********.*******.* ..

68. spacer 2.7|136989|33|NZ_CP022489|PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

gaaaccagaattgctgaagtaaattgcaaaaga	CRISPR spacer
aacgggcgaattgctgaaggaaatcgcaaaaat	Protospacer
.* .   ************ ****.******.

69. spacer 2.13|136685|32|NZ_CP022489|CRISPRCasFinder,CRT matches to MG592456 (Vibrio phage 1.081.O._10N.286.52.C2, partial genome) position: , mismatch: 10, identity: 0.688

gcgttctacagtaaggtttacagcctgagcaa	CRISPR spacer
gaacggctgagtaacgttaacagcctgagcaa	Protospacer
* ..  .  ***** *** *************

70. spacer 2.19|137051|32|NZ_CP022489|CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 10, identity: 0.688

atatcgaacgggttacggctgtcggtgtaact	CRISPR spacer
tgaccgaccgggtaacggctgtcggtggcgac	Protospacer
  *.*** ***** *************  . .

71. spacer 1.15|126406|32|NZ_CP022489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015094 (Pelagibaca abyssi strain JLT2014 plasmid pPABY6, complete sequence) position: , mismatch: 11, identity: 0.656

ccagtaacgctggcgtgataattttggtcgcc	CRISPR spacer
aagaagccgccggcgtgataattctggtcgat	Protospacer
  .. . ***.************.****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

306062 : 375988

Salmonella_phage(79.17%)

head,tail,capsid,plate,integrase,transposase,tRNA,portal,terminase,lysis

attL 316387:316431|attR 346934:346978

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086016394.1\|306062_307152_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.7e-141	87.7
WP_093976750.1\|307132_308244_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	8.4e-06	25.0
WP_129369178.1\|308653_308854_+	hypothetical protein	NA	NA	NA	NA
WP_023242846.1\|308866_309331_-	hypothetical protein	NA	NA	NA	NA
WP_023242845.1\|309403_310246_-	hypothetical protein	NA	NA	NA	NA
WP_024156456.1\|310257_311958_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_017442269.1\|312035_313157_+	N-6 DNA methylase	NA	NA	NA	NA
WP_023242843.1\|313231_314644_+	hypothetical protein	NA	NA	NA	NA
WP_023242842.1\|314991_316221_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.0e-214	89.2
316387:316431	attL	NA	NA	NA	NA
WP_093976751.1\|316548_317574_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.1e-197	96.8
WP_093976752.1\|317575_318208_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.3e-104	91.0
WP_016150823.1\|318327_318576_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	1.7e-23	69.1
WP_093976753.1\|318608_319118_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	2.1e-81	91.7
WP_093976789.1\|319125_319326_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	2.7e-32	97.0
WP_000963480.1\|319289_319631_+	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	2.1e-56	100.0
WP_093976754.1\|319697_319931_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	1.6e-28	85.7
WP_093976755.1\|319930_320158_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	6.8e-32	85.3
WP_158649080.1\|320154_320577_+	hypothetical protein	NA	NA	NA	NA
WP_093976757.1\|320573_320870_+	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	9.6e-10	45.2
WP_093976758.1\|320866_321721_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	1.6e-134	84.9
WP_093976759.1\|321717_324129_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.6
WP_001154444.1\|324286_324475_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
WP_080113007.1\|324486_324720_+	DinI family protein	A0A1S6L014	Salmonella_phage	4.9e-33	90.9
WP_080113006.1\|324795_325053_+	hypothetical protein	J9Q7T5	Salmonella_phage	2.7e-16	59.0
WP_080113005.1\|325463_326510_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.8e-176	89.7
WP_080113004.1\|326506_327232_-\|terminase	terminase-like family protein	E5FFI8	Burkholderia_phage	3.2e-22	33.0
WP_080113003.1\|327231_328998_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	95.1
WP_063886535.1\|329140_329974_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	9.3e-127	96.4
WP_000742418.1\|329990_331070_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.2e-181	90.8
WP_063886533.1\|331073_331724_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	7.8e-113	97.7
WP_063886531.1\|331817_332282_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	7.1e-84	97.4
WP_000868184.1\|332281_332485_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171565.1\|332488_332704_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_001528581.1\|332684_333194_+	lysozyme	A0A1S6KZY9	Salmonella_phage	8.3e-94	98.2
WP_001528673.1\|333198_333576_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.4e-58	96.0
WP_001528739.1\|333575_334001_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	2.7e-66	97.2
WP_013098790.1\|334096_334528_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.1e-74	96.5
WP_063886529.1\|334520_334967_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.2e-65	88.4
WP_063886527.1\|335035_335614_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.6e-96	89.6
WP_063886526.1\|335610_335970_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.7e-54	90.8
WP_063886524.1\|335956_336865_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	3.5e-151	95.0
WP_063886522.1\|336857_337463_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	4.0e-111	94.5
WP_093976760.1\|337459_338731_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	5.2e-129	52.5
WP_063886518.1\|338730_339327_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	3.3e-49	48.4
WP_063886516.1\|339460_340633_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	4.1e-213	94.9
WP_063886514.1\|340642_341158_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	1.9e-90	97.1
WP_060773291.1\|341211_341514_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.3e-43	96.0
WP_000763315.1\|341528_341648_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_063886512.1\|341640_344433_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	1.0e-294	73.2
WP_063886510.1\|344429_344915_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.0e-65	96.2
WP_093976761.1\|344911_346012_+	phage late control D family protein	E5G6Q3	Salmonella_phage	1.3e-184	90.2
WP_093976790.1\|346079_346298_+	levansucrase regulator	E5G6Q4	Salmonella_phage	7.5e-28	76.4
WP_093976762.1\|346324_346807_-	hypothetical protein	Q19UP0	Mannheimia_phage	1.9e-15	31.9
WP_072101449.1\|347367_348531_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
346934:346978	attR	NA	NA	NA	NA
WP_017442216.1\|348538_350719_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_017442217.1\|350715_352125_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_017442218.1\|352189_363664_-	biofilm-associated protein BapA	NA	NA	NA	NA
WP_001518569.1\|364283_364766_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242603.1\|364915_365392_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_017442219.1\|365381_365672_+	RnfH family protein	NA	NA	NA	NA
WP_001203445.1\|365837_366176_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880958.1\|366324_367986_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059155.1\|368071_368950_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|369073_369664_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001682111.1\|369745_370303_-	hypothetical protein	NA	NA	NA	NA
WP_127172650.1\|370422_371709_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|371728_372520_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460052.1\|372685_374047_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|374360_374609_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|374627_375176_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469807.1\|375220_375988_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

638041 : 679326

Salmonella_phage(49.02%)

coat,integrase,portal,lysis,holin,protease

attL 658471:658487|attR 679608:679624

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000716011.1\|638041_638980_+\|protease	omptin family outer membrane protease PgtE	NA	NA	NA	NA
WP_017441412.1\|639241_639445_-	excisionase	C6ZR24	Salmonella_phage	4.7e-32	95.5
WP_024137319.1\|639541_640177_-	hypothetical protein	A0A075B8I7	Enterobacteria_phage	6.3e-107	88.2
WP_017441413.1\|640421_640688_-	hypothetical protein	A0A1V0E5L9	Salmonella_phage	1.1e-44	96.6
WP_017441415.1\|641659_641917_-	hypothetical protein	A0A192Y5W0	Salmonella_phage	5.9e-40	95.3
WP_042948408.1\|641918_642560_-	hypothetical protein	A0A1R3Y5T1	Salmonella_virus	1.2e-57	62.8
WP_042948410.1\|642556_642967_-	hypothetical protein	A0A1R3Y5S0	Salmonella_virus	4.4e-69	94.1
WP_023242789.1\|642963_643134_-	DUF2737 family protein	A0A220NQV6	Salmonella_phage	1.1e-23	96.4
WP_023217205.1\|643144_643438_-	DUF2856 family protein	E7C9P8	Salmonella_phage	7.2e-50	99.0
WP_001253476.1\|643484_643769_-	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
WP_052942523.1\|643768_644476_-	recombinase	K7PKU3	Enterobacteria_phage	1.6e-119	88.5
WP_001308813.1\|644730_645006_-	hypothetical protein	K7PGS9	Enterobacteria_phage	1.6e-46	100.0
WP_023242793.1\|645095_645566_-	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	3.1e-87	98.7
WP_000392424.1\|645644_646094_-	hypothetical protein	I6RSN8	Salmonella_phage	8.7e-71	89.3
WP_072043886.1\|646424_646730_-	hypothetical protein	A5VW99	Enterobacteria_phage	2.9e-25	91.8
WP_000233125.1\|647305_647674_-	hypothetical protein	K7P6G1	Enterobacteria_phage	1.3e-56	99.2
WP_000428318.1\|647691_648408_-	helix-turn-helix domain-containing protein	K7PGR7	Enterobacteria_phage	9.2e-123	100.0
WP_043856230.1\|648514_648709_+	Cro/Cl family transcriptional regulator	K7PLQ6	Enterobacteria_phage	6.7e-28	98.4
WP_015966855.1\|648817_649096_+	ABC transporter	K7P8A8	Enterobacteria_phage	1.1e-42	100.0
WP_016246166.1\|649278_650169_+	hypothetical protein	Q716D3	Shigella_phage	3.8e-158	99.3
WP_043856231.1\|650158_651595_+	AAA family ATPase	A0A220NRL4	Escherichia_phage	1.5e-273	99.4
WP_000736903.1\|651872_652313_+	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.0e-81	100.0
WP_000153280.1\|652309_652837_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
WP_080182530.1\|652833_653010_+	NinE family protein	A5VW90	Enterobacteria_phage	1.4e-27	98.3
WP_000924597.1\|653012_653414_+	hypothetical protein	G9L690	Escherichia_phage	2.7e-63	85.0
WP_080182531.1\|653406_653583_+	protein ninF	G9L691	Escherichia_phage	1.8e-24	93.0
WP_001108028.1\|653575_654187_+	recombination protein NinG	K7PHM2	Enterobacterial_phage	5.1e-98	99.0
WP_001028837.1\|654183_654855_+	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	2.0e-127	95.5
WP_000512805.1\|654845_655364_+	DUF1133 family protein	Q716B8	Shigella_phage	2.2e-94	98.8
WP_000783734.1\|655872_656196_+\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_000229392.1\|656179_656656_+	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	1.7e-88	100.0
WP_064034457.1\|656652_657120_+\|lysis	lysis protein	I6RSQ8	Salmonella_phage	2.4e-63	86.5
WP_023994441.1\|657329_657851_+	DNA-binding protein	H6WRZ8	Salmonella_phage	1.8e-99	98.3
WP_023217190.1\|658324_658567_+	DUF2560 family protein	A0A1R3Y5V5	Salmonella_virus	1.9e-35	98.8
658471:658487	attL	NA	NA	NA	NA
WP_017441430.1\|658569_658974_+	hypothetical protein	C6ZR73	Salmonella_phage	1.5e-66	99.3
WP_000729924.1\|658977_659466_+	hypothetical protein	A8CGG1	Salmonella_phage	2.9e-88	100.0
WP_017441431.1\|659443_660943_+	DNA packaging protein	A0A0M4S5Z3	Salmonella_phage	3.1e-306	99.6
WP_017441432.1\|660942_663120_+\|portal	portal protein	I6R968	Salmonella_phage	0.0e+00	98.2
WP_017441433.1\|663133_664045_+	scaffold protein	A0A1R3Y5R6	Salmonella_virus	1.1e-160	99.7
WP_020899473.1\|664044_665337_+\|coat	coat protein	C6ZR10	Salmonella_phage	3.2e-243	99.3
WP_000538675.1\|665377_665938_+	hypothetical protein	I6S1J7	Salmonella_phage	7.0e-102	98.4
WP_010835893.1\|665921_666422_+	Packaged DNA stabilization protein gp4	I1TEJ0	Salmonella_phage	3.2e-90	100.0
WP_023198766.1\|666381_667800_+	hypothetical protein	I1TEJ1	Salmonella_phage	1.5e-273	98.9
WP_023198767.1\|667803_668505_+	hypothetical protein	C6ZR14	Salmonella_phage	4.0e-70	93.1
WP_017441438.1\|668504_668966_+	DUF2824 family protein	C6ZR15	Salmonella_phage	4.3e-73	84.9
WP_023198768.1\|668968_669658_+	hypothetical protein	B9UDK9	Salmonella_phage	1.9e-88	89.8
WP_058649962.1\|669700_671023_+	DNA transfer protein	A0A220NR03	Salmonella_phage	3.1e-233	97.0
WP_093976764.1\|671022_672915_+	DNA transfer protein	E7C9U6	Salmonella_phage	3.4e-249	77.6
WP_031624841.1\|672932_673262_-	hypothetical protein	NA	NA	NA	NA
WP_059056898.1\|673501_675262_+	hypothetical protein	I6S5Y0	Salmonella_phage	3.0e-58	88.3
WP_043856212.1\|675297_676749_-	hypothetical protein	NA	NA	NA	NA
WP_059056899.1\|676745_677663_-	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	1.3e-161	93.1
WP_023138702.1\|677659_678022_-	GtrA family protein	I1TED9	Salmonella_phage	6.2e-51	82.5
WP_017441447.1\|678156_679326_-\|integrase	tyrosine-type recombinase/integrase	I6R0M2	Salmonella_phage	7.7e-228	99.2
679608:679624	attR	NA	NA	NA	NA

DBSCAN-SWA_3

921842 : 931013

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017441997.1\|921842_922790_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.0
WP_000824854.1\|922773_923505_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|923485_923593_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|923652_924384_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|924606_926292_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|926288_927008_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_017441996.1\|927054_927522_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.0e-74	90.3
WP_017441995.1\|927578_928109_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|928280_928739_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195334.1\|928979_931013_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1103796 : 1111028

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1103796_1104216_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_017441837.1\|1104218_1105487_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.9e-227	92.2
WP_000208509.1\|1105932_1106145_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131109.1\|1106155_1106344_+	hypothetical protein	NA	NA	NA	NA
WP_017441838.1\|1106603_1107788_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	57.1
WP_000107435.1\|1108437_1108749_+	hypothetical protein	NA	NA	NA	NA
WP_017441839.1\|1108828_1109524_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_017441840.1\|1109597_1111028_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

2012882 : 2057307

Salmonella_phage(45.83%)

tail,integrase,terminase,lysis,protease

attL 2007752:2007765|attR 2058229:2058242

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2007752:2007765	attL	NA	NA	NA	NA
WP_017440933.1\|2012882_2013563_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	2.6e-82	71.0
WP_000503667.1\|2014274_2014922_+	hypothetical protein	NA	NA	NA	NA
WP_001670723.1\|2014964_2015162_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	1.4e-09	97.0
WP_127913510.1\|2015344_2015590_+	hypothetical protein	NA	NA	NA	NA
WP_000033280.1\|2015787_2016180_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	8.5e-14	37.4
WP_000370530.1\|2016289_2016898_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	1.1e-31	44.7
WP_071786695.1\|2016960_2017146_-	hypothetical protein	NA	NA	NA	NA
WP_000421108.1\|2017394_2017913_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	2.0e-47	53.8
WP_001670454.1\|2017927_2019460_-	hypothetical protein	S4TP62	Salmonella_phage	1.4e-128	66.2
WP_000049939.1\|2019459_2020140_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.5e-125	96.0
WP_001197089.1\|2020136_2021336_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	5.5e-213	96.7
WP_001270641.1\|2021336_2021690_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.0e-58	95.7
WP_000301078.1\|2021689_2022442_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	9.7e-91	69.8
WP_000931859.1\|2022560_2023016_+	hypothetical protein	NA	NA	NA	NA
WP_000819157.1\|2023099_2023432_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.7e-23	69.1
WP_000081749.1\|2023428_2024496_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.0e-174	91.5
WP_000155111.1\|2024498_2024801_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.2e-53	100.0
WP_023972346.1\|2024800_2025376_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	9.1e-97	99.5
WP_000990866.1\|2025375_2027385_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	0.0e+00	95.2
WP_000389049.1\|2027562_2028015_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.3e-61	78.7
WP_000257262.1\|2028018_2028459_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.5e-54	73.3
WP_023972347.1\|2028470_2029616_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	5.9e-164	74.8
WP_023972348.1\|2029619_2030165_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	7.4e-48	50.8
WP_001526520.1\|2030157_2030562_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	4.1e-43	69.2
WP_023972349.1\|2030561_2031071_-	hypothetical protein	A0A2H4J488	uncultured_Caudovirales_phage	8.5e-22	40.7
WP_023972350.1\|2031067_2031478_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	2.5e-32	57.4
WP_023972351.1\|2031446_2031815_-	hypothetical protein	NA	NA	NA	NA
WP_023972352.1\|2031864_2032812_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.2e-98	55.9
WP_024156459.1\|2032823_2033327_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	3.4e-31	46.4
WP_023972354.1\|2033338_2034616_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.6e-77	42.8
WP_001526527.1\|2034667_2035201_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	5.5e-48	56.9
WP_023972355.1\|2035271_2036741_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.1e-157	55.7
WP_024156460.1\|2036780_2038199_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	6.8e-186	70.0
WP_023972357.1\|2038164_2038917_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	2.6e-11	55.2
WP_024156461.1\|2038980_2039169_-	DUF826 domain-containing protein	NA	NA	NA	NA
WP_023972360.1\|2039481_2039949_-\|lysis	lysis protein	S4TNN7	Salmonella_phage	2.5e-60	80.6
WP_023972361.1\|2039945_2040857_-	site-specific DNA-methyltransferase	A0A088FRS2	Escherichia_phage	3.2e-88	53.0
WP_001526511.1\|2040853_2041342_-	lysozyme	M9P0E5	Enterobacteria_phage	4.6e-57	68.1
WP_001526513.1\|2041319_2041622_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000658037.1\|2041824_2042013_-	hypothetical protein	NA	NA	NA	NA
WP_000640103.1\|2042405_2042984_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.4e-44	52.0
WP_000717784.1\|2042980_2043274_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.1e-33	65.3
WP_000090037.1\|2043270_2043867_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-81	73.7
WP_000474096.1\|2043935_2044127_-	hypothetical protein	NA	NA	NA	NA
WP_001129735.1\|2044310_2044649_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.7e-50	86.6
WP_023972395.1\|2044648_2044819_-	hypothetical protein	I6S1S6	Salmonella_phage	6.3e-06	87.5
WP_001037052.1\|2044815_2045418_-	adenine methylase	G9L699	Escherichia_phage	1.7e-98	87.3
WP_000918617.1\|2045410_2045659_-	hypothetical protein	NA	NA	NA	NA
WP_000130738.1\|2045662_2046343_-	hypothetical protein	NA	NA	NA	NA
WP_000074839.1\|2046380_2047769_-	DNA helicase	Q76H51	Enterobacteria_phage	1.2e-105	47.1
WP_000063056.1\|2047765_2048746_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	2.3e-44	80.6
WP_001195066.1\|2048748_2048973_-	hypothetical protein	H9C163	Pectobacterium_phage	1.0e-08	44.7
WP_001643782.1\|2048995_2049442_-	hypothetical protein	H9C162	Pectobacterium_phage	5.5e-25	50.4
WP_000467661.1\|2049838_2050303_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	2.7e-35	51.7
WP_000387662.1\|2050987_2051311_+	hypothetical protein	NA	NA	NA	NA
WP_001192832.1\|2051318_2051564_+	hypothetical protein	A0A1B1W282	Salmonella_phage	3.5e-13	53.8
WP_023972393.1\|2051593_2053867_+	hypothetical protein	H9C157	Pectobacterium_phage	9.4e-105	35.0
WP_000205292.1\|2053863_2054418_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	1.3e-47	59.3
WP_000916251.1\|2054420_2054603_+	hypothetical protein	NA	NA	NA	NA
WP_000196402.1\|2054815_2055040_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000533596.1\|2055040_2056060_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.2e-91	53.5
WP_000374046.1\|2056647_2057307_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
2058229:2058242	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3550161 : 3597808

Burkholderia_phage(36.36%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001825318.1\|3550161_3551160_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_001039335.1\|3551247_3552558_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_017441254.1\|3552804_3553320_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|3553418_3553628_-	CsbD family protein	NA	NA	NA	NA
WP_010989093.1\|3553649_3553763_-	hypothetical protein	NA	NA	NA	NA
WP_001128113.1\|3553759_3555085_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|3555263_3555872_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002902.1\|3555980_3556349_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|3556519_3558940_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|3559038_3559911_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_017441255.1\|3559924_3560422_-	chorismate lyase	NA	NA	NA	NA
WP_000782497.1\|3560602_3561520_-	maltose operon protein MalM	NA	NA	NA	NA
WP_001594897.1\|3561683_3563039_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|3563127_3564237_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_001651229.1\|3564598_3565789_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000382573.1\|3565920_3567465_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252081.1\|3567479_3568370_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982752.1\|3568535_3568946_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000750805.1\|3569088_3571185_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_017441256.1\|3571184_3571922_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_122821798.1\|3571918_3572587_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|3572620_3572863_-	outer membrane protein	NA	NA	NA	NA
WP_000790025.1\|3573306_3574956_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136392.1\|3575344_3576694_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_001651225.1\|3576828_3577176_-	hypothetical protein	Q6QIE8	Burkholderia_phage	7.5e-22	52.6
WP_001226440.1\|3577752_3578040_+	membrane protein	Q6QIC8	Burkholderia_phage	5.1e-16	48.1
WP_017441257.1\|3578042_3578648_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.0e-58	58.8
WP_000777266.1\|3578660_3578975_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_017441258.1\|3579134_3579590_+	hypothetical protein	NA	NA	NA	NA
WP_000875313.1\|3579586_3579784_+	hypothetical protein	Q6QIB1	Burkholderia_phage	5.1e-07	52.9
WP_017441259.1\|3579773_3581201_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.8e-194	71.2
WP_017441260.1\|3581200_3581725_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	1.8e-67	69.0
WP_001003641.1\|3581776_3582094_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|3582053_3582182_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_017441261.1\|3582278_3584633_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.4e-65	30.5
WP_017441262.1\|3584632_3585586_+	hypothetical protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
WP_001269716.1\|3585585_3585795_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_017441263.1\|3585782_3586826_+	phage late control D family protein	A4JWL3	Burkholderia_virus	1.5e-76	45.6
WP_000679395.1\|3586835_3587558_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000593184.1\|3587884_3588247_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
WP_000703634.1\|3588243_3589173_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	6.7e-150	83.8
WP_017441264.1\|3589172_3590720_+	hypothetical protein	B9UDL6	Salmonella_phage	5.0e-49	30.4
WP_001093501.1\|3590883_3591243_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_017441265.1\|3591233_3592349_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	3.1e-101	52.7
WP_000359502.1\|3592341_3592974_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_017441266.1\|3592976_3594635_+\|tail	tail protein	A0A0M3ULF6	Salmonella_phage	8.0e-53	52.7
WP_017441267.1\|3594641_3595256_+	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_017441268.1\|3595252_3595708_+	hypothetical protein	NA	NA	NA	NA
WP_024142925.1\|3596084_3596501_+	serine acetyltransferase	NA	NA	NA	NA
WP_000587738.1\|3597079_3597808_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022489

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection